Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 238 of 276
Found at i:78630712 original size:45 final size:42
Alignment explanation
Indices: 78630602--78630991 Score: 187
Period size: 44 Copynumber: 8.7 Consensus size: 42
78630592 CAAATTTTGG
* * *
78630602 CGAATCTTATCTTCCTGAAGTTGTAGTGAAGCAGATCGAAGCCA
1 CGAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGAT-GAAG-TA
* * * *
78630646 CTAACCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGATGA
1 CGAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGA-TGAAG-T-A
*
78630691 CGAATCTTATCTTCCTGAAGTTGCAGTGAAGCAGATCGAAGTAA
1 CGAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGAT-GAAGT-A
* * * *
78630735 CTAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATA
1 CGAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGA-TGAAG-TA
* *
78630779 -GCAAGTCTTAT-TTCTCTGAAGTTGTAGTGGAACAGATTGAAGCTA
1 CG-AA-TCTTATCTTC-CTGAAGTTGCAGTGGAGCAGA-TGAAG-TA
* ** * * * *
78630824 TGAATAAACAGATCTTATCTCTTTGAAGTTGCAGTAGAGTAGATCAA-AA
1 CGAAT---CTTATC-T-TC-C--TGAAGTTGCAGTGGAGCAGATGAAGTA
* * * * * *
78630873 CAAACCTTATCTCCCTAAAGTTGCAGTAGAGCAAGTTGAAGTA
1 CGAATCTTATCTTCCTGAAGTTGCAGTGGAGC-AGATGAAGTA
* * * * *
78630916 -GCAAGTCTTATCTCCCTGAAGTTGCAGTGGAACAAACTAAAAATA
1 CG-AA-TCTTATCTTCCTGAAGTTGCAGTGGAGCAGA-T-GAAGTA
*
78630961 GTGAATCTTAT-TTCCCTGAAGTTGCAGTGGA
1 -CGAATCTTATCTT-CCTGAAGTTGCAGTGGA
78630992 ATAGATGGAA
Statistics
Matches: 264, Mismatches: 56, Indels: 51
0.71 0.15 0.14
Matches are distributed among these distances:
41 15 0.06
42 5 0.02
43 5 0.02
44 103 0.39
45 98 0.37
46 7 0.03
47 4 0.02
49 4 0.02
50 4 0.02
51 3 0.01
52 16 0.06
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.28
Consensus pattern (42 bp):
CGAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATGAAGTA
Found at i:78630756 original size:89 final size:88
Alignment explanation
Indices: 78630602--78630821 Score: 320
Period size: 89 Copynumber: 2.5 Consensus size: 88
78630592 CAAATTTTGG
*
78630602 CGAATCTTATCTTCCTGAAGTTGTAGTGAAGCAGATCGAAGCCACTAACCTTATCTCCCTAAAGT
1 CGAATCTTATCTTCCTGAAGTTGTAGTGAAGCAGATCGAAGCAACTAACCTTATCTCCCTAAAGT
*
78630667 TGCAGTGGAGCAGACTGAAGATGA
66 TGCAGTGGAGCAGACTAAAGAT-A
* * *
78630691 CGAATCTTATCTTCCTGAAGTTGCAGTGAAGCAGATCGAAGTAACTAACCTTATCTCCCTGAAGT
1 CGAATCTTATCTTCCTGAAGTTGTAGTGAAGCAGATCGAAGCAACTAACCTTATCTCCCTAAAGT
78630756 TGCAGTGGAGCAGACTAAAGATA
66 TGCAGTGGAGCAGACTAAAGATA
*
78630779 -GCAAGTCTTAT-TTCTCTGAAGTTGTAGTGGAA-CAGATTGAAGC
1 CG-AA-TCTTATCTTC-CTGAAGTTGTAGT-GAAGCAGATCGAAGC
78630822 TATGAATAAA
Statistics
Matches: 119, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
87 1 0.01
88 6 0.05
89 109 0.92
90 3 0.03
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (88 bp):
CGAATCTTATCTTCCTGAAGTTGTAGTGAAGCAGATCGAAGCAACTAACCTTATCTCCCTAAAGT
TGCAGTGGAGCAGACTAAAGATA
Found at i:78631157 original size:85 final size:89
Alignment explanation
Indices: 78630740--78631258 Score: 349
Period size: 92 Copynumber: 5.7 Consensus size: 89
78630730 AGTAACTAAC
* * * * * * *
78630740 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCAAGTCTTATTTCTCTGAAGTTGTA
1 CTTATCTCTCTGAAGTTGCAGTAGAGCAGA-TCAA-A-A-CAAGCCTTATCTCCCTGAAGTTGCA
* * *
78630805 GTGGAACAGATTGAAG-CTATGAATAAACAGAT
62 GTGAAACAAATTGAAGAC-AT-AGT--A-AGAT
* * * *
78630837 CTTATCTCTTTGAAGTTGCAGTAGAGTAGATCAAAACAAACCTTATCTCCCTAAAGTTGCAGT-A
1 CTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAAACAAGCCTTATCTCCCTGAAGTTGCAGTGA
* * *
78630901 GAGCAAGTTGAAG---TAGCAAG-T
66 -AACAAATTGAAGACATAGTAAGAT
* * * * * * ** *
78630922 CTTATCTCCCTGAAGTTGCAGTGGAACAAACTAAAAATAGTGAATCTTATTTCCCTGAAGTTGCA
1 CTTATCTCTCTGAAGTTGCAGTAGAGCAGA-TCAAAACA---AGCCTTATCTCCCTGAAGTTGCA
* * * * * *
78630987 GTGGAATAGATGGAAG-CTGTGAATTACAGAT
62 GTGAAACAAATTGAAGAC-AT--AGTA-AGAT
* * * * *
78631018 CTTATCTATCTGAAGTTGCAGTAGAGTAGGTCAAAACAAGCCTTATTTCCCTGAAGTTACAGTGA
1 CTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAAACAAGCCTTATCTCCCTGAAGTTGCAGTGA
*
78631083 AACAGATTGAA-AC-T-GT-AGAT
66 AACAAATTGAAGACATAGTAAGAT
* * * *
78631103 CTTATCCCTCTGAAGTTGCAATAGAGCAGATCAAAACAAGTCTTATCTCCCTGAAGTTGCAGTGG
1 CTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAAACAAGCCTTATCTCCCTGAAGTTGCAGTGA
* *
78631168 AACAAATTGAAGCCATAAATTACAGAT
66 AACAAATTGAAGACAT--AGTA-AGAT
* * *
78631195 CTTATCTCTCTGAAGTTGCAGTAGAACAGATCAAAACAAACCTTGTCTCCCTGAAGTTGCAGTG
1 CTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAAACAAGCCTTATCTCCCTGAAGTTGCAGTG
78631259 GAGCAGATCG
Statistics
Matches: 331, Mismatches: 70, Indels: 47
0.74 0.16 0.10
Matches are distributed among these distances:
85 95 0.29
86 9 0.03
87 3 0.01
89 30 0.09
90 3 0.01
92 96 0.29
93 30 0.09
94 3 0.01
95 9 0.03
96 27 0.08
97 26 0.08
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (89 bp):
CTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAAACAAGCCTTATCTCCCTGAAGTTGCAGTGA
AACAAATTGAAGACATAGTAAGAT
Found at i:78631211 original size:177 final size:178
Alignment explanation
Indices: 78630740--78631258 Score: 620
Period size: 177 Copynumber: 2.9 Consensus size: 178
78630730 AGTAACTAAC
* *
78630740 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCAAGTCTTATTTCTCTGAAGTTGTA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAA-A-A-CAAGTCTTATTTCCCTGAAGTTGCA
* *
78630805 GTGGAACAGATTGAAGCTATGAATAAACAGATCTTATCTCTTTGAAGTTGCAGTAGAGTAGATCA
63 GTGGAACAGATTGAAGCTATGAAT-TACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCA
* *
78630870 AAACAAACCTTATCTCCCTAAAGTTGCAGT-AGAGCAAGTTGAAGTAGCAAGT
127 AAACAAACCTTATCTCCCTGAAGTTGCAGTGAGAACAAGTTGAAGTAG-AAGT
* * * *
78630922 CTTATCTCCCTGAAGTTGCAGTGGAACAAACTAAAAATAGTGAATCTTATTTCCCTGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAACA---AGTCTTATTTCCCTGAAGTTGCA
* * * * *
78630987 GTGGAATAGATGGAAGCTGTGAATTACAGATCTTATCTATCTGAAGTTGCAGTAGAGTAGGTCAA
63 GTGGAACAGATTGAAGCTATGAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCAA
* * *
78631052 AACAAGCCTTATTTCCCTGAAGTTACAGTGA-AAC-AGATTGAAACTGTAG-A-T
128 AACAAACCTTATCTCCCTGAAGTTGCAGTGAGAACAAG-TTG-AA--GTAGAAGT
* * * *
78631103 CTTATC-CCTCTGAAGTTGCAATAGAGCAGA-TCAAAACAAGTCTTATCTCCCTGAAGTTGCAGT
1 CTTATCTCC-CTGAAGTTGCAGTGGAGCAGACTAAAAACAAGTCTTATTTCCCTGAAGTTGCAGT
* * * **
78631166 GGAACAAATTGAAGCCATAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAACAGATCAAAA
65 GGAACAGATTGAAGCTATGAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCAAAA
*
78631231 CAAACCTTGTCTCCCTGAAGTTGCAGTG
130 CAAACCTTATCTCCCTGAAGTTGCAGTG
78631259 GAGCAGATCG
Statistics
Matches: 288, Mismatches: 40, Indels: 23
0.82 0.11 0.07
Matches are distributed among these distances:
177 102 0.35
179 1 0.00
180 11 0.04
181 92 0.32
182 78 0.27
184 4 0.01
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (178 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAACAAGTCTTATTTCCCTGAAGTTGCAGTG
GAACAGATTGAAGCTATGAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCAAAAC
AAACCTTATCTCCCTGAAGTTGCAGTGAGAACAAGTTGAAGTAGAAGT
Found at i:78631343 original size:135 final size:133
Alignment explanation
Indices: 78631112--78631358 Score: 298
Period size: 135 Copynumber: 1.8 Consensus size: 133
78631102 TCTTATCCCT
* * * *
78631112 CTGAAGTTGCAATAGAGCAGATCAAAACAAGTCTTATCTCCCTGAAGTTGCAGTGGAACAAATTG
1 CTGAAGTTGCAATAGAGCAGATCAAAACAAATCTTATCCCCCTGAAGTTGCAATGGAACAAATCG
* * * * *
78631177 AAGCCATAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAACAGATCAAAACAAACCTTGTC
66 AAGCCATAAATCACAAACCTTACCTCCCTGAAGTTGCAGTAGAACAGATCAAAACAAACCTTGTC
78631242 TCC
131 TCC
* * * **
78631245 CTGAAGTTGCAGTGGAGCAGATCGAAGTTACAAATCTTA-CCCCCTGAAGTTGCAATGGAGTAAA
1 CTGAAGTTGCAATAGAGCAGATC-AA--AACAAATCTTATCCCCCTGAAGTTGCAATGGAACAAA
* * * *
78631309 TCGAAGCTATAGATCACAAACCTTGCCTCCCTGAAGTTGCAGTGGAACAG
63 TCGAAGCCATAAATCACAAACCTTACCTCCCTGAAGTTGCAGTAGAACAG
78631359 GTTGAAATAA
Statistics
Matches: 93, Mismatches: 18, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
133 21 0.23
134 2 0.02
135 61 0.66
136 9 0.10
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.24
Consensus pattern (133 bp):
CTGAAGTTGCAATAGAGCAGATCAAAACAAATCTTATCCCCCTGAAGTTGCAATGGAACAAATCG
AAGCCATAAATCACAAACCTTACCTCCCTGAAGTTGCAGTAGAACAGATCAAAACAAACCTTGTC
TCC
Found at i:78633101 original size:26 final size:25
Alignment explanation
Indices: 78633053--78633109 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 25
78633043 AACTATTGAC
* * *
78633053 CATTTTAAACTTTATATATATTATT
1 CATTTTAAAATTTATACACATTATT
*
78633078 TATTTTAAAATATTATACACATTATT
1 CATTTTAAAAT-TTATACACATTATT
78633104 CATTTT
1 CATTTT
78633110 GATTTATATA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
25 9 0.35
26 17 0.65
ACGTcount: A:0.37, C:0.09, G:0.00, T:0.54
Consensus pattern (25 bp):
CATTTTAAAATTTATACACATTATT
Found at i:78633177 original size:28 final size:29
Alignment explanation
Indices: 78633120--78633178 Score: 68
Period size: 30 Copynumber: 2.0 Consensus size: 29
78633110 GATTTATATA
*
78633120 TATATATATATCTTCTATTTTAAACCATTT
1 TATATAGATATCTTCTATTTTAAA-CATTT
*
78633150 TATATAGATAT-TATCTATTTTTAA-ATTT
1 TATATAGATATCT-TCTATTTTAAACATTT
78633178 T
1 T
78633179 CTACGTTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
28 5 0.19
29 1 0.04
30 20 0.77
ACGTcount: A:0.34, C:0.08, G:0.02, T:0.56
Consensus pattern (29 bp):
TATATAGATATCTTCTATTTTAAACATTT
Found at i:78633387 original size:24 final size:23
Alignment explanation
Indices: 78633369--78633446 Score: 72
Period size: 23 Copynumber: 3.4 Consensus size: 23
78633359 GTTTTATACT
78633369 TTATTCATTTTAAAATTTTCATA
1 TTATTCATTTTAAAATTTTCATA
* ** *
78633392 TTATTTATTTTAAGCTCTT--TA
1 TTATTCATTTTAAAATTTTCATA
*
78633413 TTATTTATTTT-AAATTTTCATACA
1 TTATTCATTTTAAAATTTTCAT--A
78633437 TTATTCATTT
1 TTATTCATTT
78633447 GAAACTATTT
Statistics
Matches: 43, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
20 4 0.09
21 13 0.30
22 1 0.02
23 15 0.35
24 10 0.23
ACGTcount: A:0.29, C:0.09, G:0.01, T:0.60
Consensus pattern (23 bp):
TTATTCATTTTAAAATTTTCATA
Found at i:78636877 original size:83 final size:83
Alignment explanation
Indices: 78636760--78636927 Score: 293
Period size: 83 Copynumber: 2.0 Consensus size: 83
78636750 TCCTTAAAAT
* **
78636760 AATATTTTTTATTTATCATTTTTTTTCTTTAAACTTAAAATTAATCAAAATCATTTTATAAAATA
1 AATATTTTTTATTTATCATTTTTTTCCCCTAAACTTAAAATTAATCAAAATCATTTTATAAAATA
78636825 ATCATGCCATTATTGATG
66 ATCATGCCATTATTGATG
78636843 AATATTTTTTATTTTATCA-TTTTTTCCCCTAAACTTAAAATTAATCAAAATCATTTTATAAAAT
1 AATATTTTTTA-TTTATCATTTTTTTCCCCTAAACTTAAAATTAATCAAAATCATTTTATAAAAT
78636907 AATCATGCCATTATTGATG
65 AATCATGCCATTATTGATG
78636926 AA
1 AA
78636928 ATCAGAAGTA
Statistics
Matches: 81, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
83 74 0.91
84 7 0.09
ACGTcount: A:0.38, C:0.11, G:0.04, T:0.47
Consensus pattern (83 bp):
AATATTTTTTATTTATCATTTTTTTCCCCTAAACTTAAAATTAATCAAAATCATTTTATAAAATA
ATCATGCCATTATTGATG
Found at i:78644312 original size:24 final size:25
Alignment explanation
Indices: 78644284--78644331 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
78644274 GTTTAAAAAT
*
78644284 TTTTAT-TATTATTTCTAT-TTTAAC
1 TTTTATCT-TTATTTATATCTTTAAC
78644308 TTTTATCTTTATTTATATCTTTAA
1 TTTTATCTTTATTTATATCTTTAA
78644332 AGTACTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 15 0.71
25 6 0.29
ACGTcount: A:0.25, C:0.08, G:0.00, T:0.67
Consensus pattern (25 bp):
TTTTATCTTTATTTATATCTTTAAC
Found at i:78649235 original size:15 final size:14
Alignment explanation
Indices: 78649210--78649239 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
78649200 ACCATCTAAA
78649210 ATTTAAAAAAATAT
1 ATTTAAAAAAATAT
78649224 ATTTATAAAAAATAT
1 ATTTA-AAAAAATAT
78649239 A
1 A
78649240 AAAATTAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
ATTTAAAAAAATAT
Found at i:78663009 original size:21 final size:21
Alignment explanation
Indices: 78662983--78663023 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
78662973 AGACGAGCAA
* *
78662983 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
78663004 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
78663024 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:78665737 original size:43 final size:43
Alignment explanation
Indices: 78665690--78665773 Score: 150
Period size: 43 Copynumber: 2.0 Consensus size: 43
78665680 CCGAATTTGA
*
78665690 TATTTTATTTTAATTGAATTTGATATTTATATTTAAAAAAAAT
1 TATTTTATTTTAATTAAATTTGATATTTATATTTAAAAAAAAT
*
78665733 TATTTTATTTTAATTAAATTTGATATTTATATTTAATAAAA
1 TATTTTATTTTAATTAAATTTGATATTTATATTTAAAAAAA
78665774 GTTTATATAC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.55
Consensus pattern (43 bp):
TATTTTATTTTAATTAAATTTGATATTTATATTTAAAAAAAAT
Found at i:78665767 original size:23 final size:23
Alignment explanation
Indices: 78665683--78665769 Score: 101
Period size: 23 Copynumber: 3.9 Consensus size: 23
78665673 TTGGTATCCG
*
78665683 AATTTGATATTT-TATTTTAATTG
1 AATTTGATATTTATA-TTTAATTA
**
78665706 AATTTGATATTTATATTTAAAAA
1 AATTTGATATTTATATTTAATTA
*
78665729 AAATT-AT-TTTAT-TTTAATTA
1 AATTTGATATTTATATTTAATTA
78665749 AATTTGATATTTATATTTAAT
1 AATTTGATATTTATATTTAAT
78665770 AAAAGTTTAT
Statistics
Matches: 53, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
20 10 0.19
21 7 0.13
22 7 0.13
23 27 0.51
24 2 0.04
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (23 bp):
AATTTGATATTTATATTTAATTA
Found at i:78665781 original size:23 final size:22
Alignment explanation
Indices: 78665683--78665781 Score: 87
Period size: 23 Copynumber: 4.4 Consensus size: 22
78665673 TTGGTATCCG
**
78665683 AATTTGATATTT-TATTTTAATTG
1 AATTT-ATATTTATA-TTTAATAA
*
78665706 AATTTGATATTTATATTTAAAAA
1 AATTT-ATATTTATATTTAATAA
* *
78665729 AAATTAT-TTTAT-TTTAATTA
1 AATTTATATTTATATTTAATAA
78665749 AATTTGATATTTATATTTAATAA
1 AATTT-ATATTTATATTTAATAA
78665772 AAGTTTATAT
1 AA-TTTATAT
78665782 ACTCTGATAT
Statistics
Matches: 63, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
20 10 0.16
21 7 0.11
22 7 0.11
23 34 0.54
24 5 0.08
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (22 bp):
AATTTATATTTATATTTAATAA
Found at i:78669052 original size:15 final size:15
Alignment explanation
Indices: 78669009--78669052 Score: 56
Period size: 14 Copynumber: 3.0 Consensus size: 15
78668999 CCATTTAAGT
78669009 TTAAAGATAATTTAA
1 TTAAAGATAATTTAA
*
78669024 AT-AAGATTAA-TTAA
1 TTAAAGA-TAATTTAA
78669038 TTAAAGATAATTTAA
1 TTAAAGATAATTTAA
78669053 AAATACACAA
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.39
Consensus pattern (15 bp):
TTAAAGATAATTTAA
Found at i:78671675 original size:62 final size:62
Alignment explanation
Indices: 78671603--78671742 Score: 190
Period size: 62 Copynumber: 2.3 Consensus size: 62
78671593 ACGCCCGTGA
* * * * **
78671603 CCCTGGCCGTGTGGTTTTCTACTATGAACAGTGAGTTACACGGCCTGGGCACATGCCCATGT
1 CCCTGGCCGTGTGGTTTTATACAATGAACAGTGAGTTACACAGCCTGGACACACACCCATGT
* * **
78671665 TCCTGGCCGTGTGATTTTATACAATGAACAGTGAGTTACACAGCCTGGACACACACCTGTGT
1 CCCTGGCCGTGTGGTTTTATACAATGAACAGTGAGTTACACAGCCTGGACACACACCCATGT
78671727 CCCTGGCCGTGTGGTT
1 CCCTGGCCGTGTGGTT
78671743 CTTACACCCC
Statistics
Matches: 66, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
62 66 1.00
ACGTcount: A:0.19, C:0.26, G:0.26, T:0.28
Consensus pattern (62 bp):
CCCTGGCCGTGTGGTTTTATACAATGAACAGTGAGTTACACAGCCTGGACACACACCCATGT
Found at i:78675909 original size:19 final size:18
Alignment explanation
Indices: 78675884--78675923 Score: 50
Period size: 16 Copynumber: 2.4 Consensus size: 18
78675874 TAATTAGTTC
*
78675884 AAAA-TTATAAAAAT-AT
1 AAAATTTATTAAAATAAT
78675900 -AAATTTATTAAAATAAT
1 AAAATTTATTAAAATAAT
78675917 AAAATTT
1 AAAATTT
78675924 TATTTTAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
15 3 0.15
16 9 0.45
17 2 0.10
18 6 0.30
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
AAAATTTATTAAAATAAT
Found at i:78676018 original size:41 final size:41
Alignment explanation
Indices: 78675973--78676052 Score: 142
Period size: 41 Copynumber: 2.0 Consensus size: 41
78675963 TTTTACCGCT
78675973 GTAATATAGGTATCATAGTTAGATTTTTTTGAAAAGTCTGC
1 GTAATATAGGTATCATAGTTAGATTTTTTTGAAAAGTCTGC
* *
78676014 GTAATCTAGGTATCATGGTTAGATTTTTTTGAAAAGTCT
1 GTAATATAGGTATCATAGTTAGATTTTTTTGAAAAGTCT
78676053 TTCATAAATG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.42
Consensus pattern (41 bp):
GTAATATAGGTATCATAGTTAGATTTTTTTGAAAAGTCTGC
Found at i:78678920 original size:37 final size:37
Alignment explanation
Indices: 78678867--78679297 Score: 321
Period size: 37 Copynumber: 11.5 Consensus size: 37
78678857 GAAAAATGGA
* *
78678867 ATACTGAATG-GTCTCAAAGGAGCAATGTCTACTAATT
1 ATACTGAATGTG-CTCAAACGAGCAATATCTACTAATT
* *
78678904 ATACTGAATGTGCTCAAACGAACAATATCTACTAAAT
1 ATACTGAATGTGCTCAAACGAGCAATATCTACTAATT
* * * * * * *
78678941 CTATTGAACGTGCTCAAAAGAGCAATGTCTATTGATT
1 ATACTGAATGTGCTCAAACGAGCAATATCTACTAATT
* * * * ** ** *
78678978 ATACTAAAAGTTGATCAAATGAGTGATATCTGTTGATT
1 ATACTGAATG-TGCTCAAACGAGCAATATCTACTAATT
*
78679016 ATACTGAATGTGCTCAAACAAGCAATATCTACTGAA-T
1 ATACTGAATGTGCTCAAACGAGCAATATCTACT-AATT
* * * *
78679053 CTACTGAACGTGCTCAAAAGAGCAATGTCTACTAATT
1 ATACTGAATGTGCTCAAACGAGCAATATCTACTAATT
* * ** * *
78679090 ATACTGAAAGTTGCTTAAACGAGTGATATCCATTAATT
1 ATACTGAATG-TGCTCAAACGAGCAATATCTACTAATT
* *
78679128 ATACTGAATGGGCTCAAACGAGCAATATCTAC-AGAAT
1 ATACTGAATGTGCTCAAACGAGCAATATCTACTA-ATT
** * * * * *
78679165 ATACTGAACATGCTTAAAAGAACAATGTCTACTGATT
1 ATACTGAATGTGCTCAAACGAGCAATATCTACTAATT
* * * *
78679202 ATACTGAAAGTTGCTCAAACAAGCGATATCCACTAATT
1 ATACTGAATG-TGCTCAAACGAGCAATATCTACTAATT
** * *
78679240 ATACTGAATCAGCTCAAACGAGCGATATCTACTGATT
1 ATACTGAATGTGCTCAAACGAGCAATATCTACTAATT
78679277 ATAC-GAAATGCATGCTCAAAC
1 ATACTG-AATG--TGCTCAAAC
78679298 AAGCTTTATC
Statistics
Matches: 301, Mismatches: 82, Indels: 20
0.75 0.20 0.05
Matches are distributed among these distances:
36 4 0.01
37 202 0.67
38 87 0.29
39 8 0.03
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.29
Consensus pattern (37 bp):
ATACTGAATGTGCTCAAACGAGCAATATCTACTAATT
Found at i:78679077 original size:112 final size:112
Alignment explanation
Indices: 78678899--78679274 Score: 511
Period size: 112 Copynumber: 3.4 Consensus size: 112
78678889 CAATGTCTAC
* *
78678899 TAATTATACTGAATGTGCTCAAACGAA-CAATATCTACTAAATCTATTGAACGTGCTCAAAAGAG
1 TAATTATACTGAATGTGCTCAAAC-AAGCAATATCTACTGAATCTACTGAACGTGCTCAAAAGAG
* * * * **
78678963 CAATGTCTATTGATTATACTAAAAGTTGATCAAATGAGTGATATCTGT
65 CAATGTCTACTGATTATACTGAAAGTTGCTCAAACGAGTGATATCCAT
*
78679011 TGATTATACTGAATGTGCTCAAACAAGCAATATCTACTGAATCTACTGAACGTGCTCAAAAGAGC
1 TAATTATACTGAATGTGCTCAAACAAGCAATATCTACTGAATCTACTGAACGTGCTCAAAAGAGC
* *
78679076 AATGTCTACTAATTATACTGAAAGTTGCTTAAACGAGTGATATCCAT
66 AATGTCTACTGATTATACTGAAAGTTGCTCAAACGAGTGATATCCAT
* * * * * * *
78679123 TAATTATACTGAATGGGCTCAAACGAGCAATATCTACAGAATATACTGAACATGCTTAAAAGAAC
1 TAATTATACTGAATGTGCTCAAACAAGCAATATCTACTGAATCTACTGAACGTGCTCAAAAGAGC
* * *
78679188 AATGTCTACTGATTATACTGAAAGTTGCTCAAACAAGCGATATCCAC
66 AATGTCTACTGATTATACTGAAAGTTGCTCAAACGAGTGATATCCAT
** * *
78679235 TAATTATACTGAATCAGCTCAAACGAGCGATATCTACTGA
1 TAATTATACTGAATGTGCTCAAACAAGCAATATCTACTGA
78679275 TTATACGAAA
Statistics
Matches: 235, Mismatches: 28, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
111 2 0.01
112 233 0.99
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.29
Consensus pattern (112 bp):
TAATTATACTGAATGTGCTCAAACAAGCAATATCTACTGAATCTACTGAACGTGCTCAAAAGAGC
AATGTCTACTGATTATACTGAAAGTTGCTCAAACGAGTGATATCCAT
Found at i:78679218 original size:75 final size:74
Alignment explanation
Indices: 78678879--78679284 Score: 318
Period size: 75 Copynumber: 5.5 Consensus size: 74
78678869 ACTGAATGGT
* * * * * * *
78678879 CTCAAAGGAGCAATGTCTACTAATTATACTGAATGTGCTCAAACGAACAATATCTACTAAATCTA
1 CTCAAAAGAGCAATATCTACTGATTATACTGAAAGTGCTCAAACGAGCAATATCTACTAATTATA
* *
78678944 TTGAACGTG
66 CTGAACATG
* * * * * ** ** *
78678953 CTCAAAAGAGCAATGTCTATTGATTATACTAAAAGTTGATCAAATGAGTGATATCTGTTGATTAT
1 CTCAAAAGAGCAATATCTACTGATTATACTGAAAG-TGCTCAAACGAGCAATATCTACTAATTAT
**
78679018 ACTGAATGTG
65 ACTGAACATG
* * * * *
78679028 CTCAAACA-AGCAATATCTACTGAATCTACTGAACGTGCTCAAAAGAGCAATGTCTACTAATTAT
1 CTCAAA-AGAGCAATATCTACTGATTATACTGAAAGTGCTCAAACGAGCAATATCTACTAATTAT
78679092 ACTGAA-AGTTG
65 ACTGAACA--TG
* * ** * * * * * *
78679103 CTTAAACGAGTGATATCCATTAATTATACTGAATGGGCTCAAACGAGCAATATCTAC-AGAATAT
1 CTCAAAAGAGCAATATCTACTGATTATACTGAAAGTGCTCAAACGAGCAATATCTACTA-ATTAT
78679167 ACTGAACATG
65 ACTGAACATG
* * * * * *
78679177 CTTAAAAGAACAATGTCTACTGATTATACTGAAAGTTGCTCAAACAAGCGATATCCACTAATTAT
1 CTCAAAAGAGCAATATCTACTGATTATACTGAAAG-TGCTCAAACGAGCAATATCTACTAATTAT
78679242 ACTGAATCA-G
65 ACTGAA-CATG
* *
78679252 CTCAAACGAGCGATATCTACTGATTATAC-GAAA
1 CTCAAAAGAGCAATATCTACTGATTATACTGAAA
78679285 TGCATGCTCA
Statistics
Matches: 257, Mismatches: 65, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
74 90 0.35
75 162 0.63
76 5 0.02
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (74 bp):
CTCAAAAGAGCAATATCTACTGATTATACTGAAAGTGCTCAAACGAGCAATATCTACTAATTATA
CTGAACATG
Found at i:78692117 original size:46 final size:46
Alignment explanation
Indices: 78692067--78692328 Score: 234
Period size: 46 Copynumber: 5.7 Consensus size: 46
78692057 TGGTTGAGCA
78692067 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
78692113 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-AC-AAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGAATG
78692158 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
78692206 TCCGAACTCGTTAAGTTGAGTTCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
78692251 AATCCGAACTCGTTGAGTTGAGTCCGAGTTAACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
78692299 -CCTGAGCTTGTTGAGTTGAGTCTGAGTTCA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCA
78692329 TTTAGGGGCG
Statistics
Matches: 173, Mismatches: 26, Indels: 34
0.74 0.11 0.15
Matches are distributed among these distances:
42 2 0.01
43 5 0.03
45 9 0.05
46 84 0.49
47 60 0.35
48 7 0.04
50 4 0.02
51 2 0.01
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:78692182 original size:47 final size:46
Alignment explanation
Indices: 78692066--78692280 Score: 190
Period size: 47 Copynumber: 4.6 Consensus size: 46
78692056 ATGGTTGAGC
* * * * *
78692066 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGAATG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-AC-AAGG
78692113 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACAAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACAAGG
* * * * *
78692158 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGAATG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-AC-AAGG
* * * *
78692206 -TCCGAACTCGTTAAGTTGAGTTCGAGTTCGTGAGATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACAAGG
78692251 AATCCGAACTCGTTGAGTTGAGTCCGAGTT
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTT
78692281 AACTTATGGA
Statistics
Matches: 137, Mismatches: 20, Indels: 22
0.77 0.11 0.12
Matches are distributed among these distances:
45 7 0.05
46 62 0.45
47 64 0.47
48 4 0.03
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (46 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACAAGG
Found at i:78692223 original size:93 final size:93
Alignment explanation
Indices: 78692064--78692327 Score: 413
Period size: 93 Copynumber: 2.8 Consensus size: 93
78692054 GGATGGTTGA
78692064 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
78692129 TGAGTCCGAGTTCGTGAAATGTAACAAG
66 TGAGTCCGAGTTCGTGAAATGTAACAAG
*
78692157 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTAAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
* * *
78692222 TGAGTTCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACAAG
* * * * * *
78692250 GAATCCGAACTCGTTGAGTTGAGTCCGAGTTAACTTATGGATGTGAACG-CCTGAGCTTGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC-GAACTCGTTGAG
*
78692314 TTGAGTCTGAGTTC
65 TTGAGTCCGAGTTC
78692328 ATTTAGGGGC
Statistics
Matches: 157, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
92 2 0.01
93 155 0.99
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACAAG
Found at i:78703348 original size:15 final size:15
Alignment explanation
Indices: 78703305--78703348 Score: 56
Period size: 14 Copynumber: 3.0 Consensus size: 15
78703295 CCATTTAAGT
78703305 TTAAAGATAATTTAA
1 TTAAAGATAATTTAA
*
78703320 AT-AAGATTAA-TTAA
1 TTAAAGA-TAATTTAA
78703334 TTAAAGATAATTTAA
1 TTAAAGATAATTTAA
78703349 AAATACACAA
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.39
Consensus pattern (15 bp):
TTAAAGATAATTTAA
Found at i:78705437 original size:17 final size:18
Alignment explanation
Indices: 78705412--78705449 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
78705402 AATTATTTTA
78705412 AAATATTAAAAAAATT-T
1 AAATATTAAAAAAATTGT
*
78705429 AAATTTTAAAAAAATTGT
1 AAATATTAAAAAAATTGT
78705447 AAA
1 AAA
78705450 AACATTAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (18 bp):
AAATATTAAAAAAATTGT
Found at i:78705743 original size:28 final size:29
Alignment explanation
Indices: 78705692--78705748 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 29
78705682 AGAAAAATTG
* *
78705692 TAAATTTTATTATAATTTTTACAATTTTT
1 TAAATTTTATTATAATATTCACAATTTTT
*
78705721 TAAA-TTTATTATGATATTCACAATTTTT
1 TAAATTTTATTATAATATTCACAATTTTT
78705749 AAACAATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
28 21 0.84
29 4 0.16
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (29 bp):
TAAATTTTATTATAATATTCACAATTTTT
Found at i:78705776 original size:31 final size:29
Alignment explanation
Indices: 78705741--78705799 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
78705731 ATGATATTCA
*
78705741 CAATTTTTAAACAATTTTAAAAGAATATTTG
1 CAATTTTT-AA-AATTTTAAAAAAATATTTG
*
78705772 CAATTTTTAATATTTTAAAAAAATATTT
1 CAATTTTTAAAATTTTAAAAAAATATTT
78705800 TAATGATCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 16 0.62
30 2 0.08
31 8 0.31
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.46
Consensus pattern (29 bp):
CAATTTTTAAAATTTTAAAAAAATATTTG
Found at i:78705944 original size:20 final size:20
Alignment explanation
Indices: 78705921--78705998 Score: 61
Period size: 20 Copynumber: 4.0 Consensus size: 20
78705911 ACAATTCTTA
*
78705921 AAAATTTTTTATAGTTTTTT
1 AAAATTTTTTATAATTTTTT
**
78705941 AAAA-TCGTTATAAATTTTTT
1 AAAATTTTTTAT-AATTTTTT
* ** *
78705961 ACAATTTTAAATAATTTGTT
1 AAAATTTTTTATAATTTTTT
*
78705981 AACATTTTTTAT-ATTTTT
1 AAAATTTTTTATAATTTTT
78705999 ACAACTTTCT
Statistics
Matches: 42, Mismatches: 14, Indels: 5
0.69 0.23 0.08
Matches are distributed among these distances:
19 10 0.24
20 29 0.69
21 3 0.07
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.58
Consensus pattern (20 bp):
AAAATTTTTTATAATTTTTT
Found at i:78705999 original size:30 final size:29
Alignment explanation
Indices: 78705922--78705999 Score: 77
Period size: 30 Copynumber: 2.6 Consensus size: 29
78705912 CAATTCTTAA
*
78705922 AAATTTTTTATAGTTTTTTAAAATCGTTAT
1 AAATTTTTTATA-TTTTTAAAAATCGTTAT
* * *
78705952 AAATTTTTTACAATTTTAAATAATTTGTTA-
1 AAATTTTTTATATTTTTAAA-AA-TCGTTAT
*
78705982 ACATTTTTTATATTTTTA
1 AAATTTTTTATATTTTTA
78706000 CAACTTTCTA
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
29 6 0.15
30 28 0.72
31 5 0.13
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.58
Consensus pattern (29 bp):
AAATTTTTTATATTTTTAAAAATCGTTAT
Found at i:78707058 original size:17 final size:19
Alignment explanation
Indices: 78707032--78707066 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
78707022 TCTCTCTCTT
78707032 TTTTTCAG-TTTTACTTTG
1 TTTTTCAGTTTTTACTTTG
78707050 TTTTT-AGTTTTTACTTT
1 TTTTTCAGTTTTTACTTT
78707067 TAAAAGTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 2 0.12
18 14 0.88
ACGTcount: A:0.11, C:0.09, G:0.09, T:0.71
Consensus pattern (19 bp):
TTTTTCAGTTTTTACTTTG
Found at i:78715442 original size:52 final size:53
Alignment explanation
Indices: 78715322--78715463 Score: 180
Period size: 52 Copynumber: 2.7 Consensus size: 53
78715312 GATCACACCA
* * * **
78715322 CACACCGATGCCATATCCCAGATATGGTCTTATACGGAATCACATTATCATGT
1 CACACTGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTATCACAT
*
78715375 CACACTGATGCCATAGCCTAGCTATGGTCTTATACGAGAA-CACA-TATCACAT
1 CACACTGATGCCATAGCCCAGCTATGGTCTTATACG-GAATCACATTATCACAT
* * *
78715427 TACACTGATGCCATAGCCCAGCTATAGTCTTAAACGG
1 CACACTGATGCCATAGCCCAGCTATGGTCTTATACGG
78715464 GCGCACATAT
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
51 1 0.01
52 38 0.49
53 36 0.46
54 3 0.04
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (53 bp):
CACACTGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTATCACAT
Found at i:78719999 original size:27 final size:27
Alignment explanation
Indices: 78719924--78719993 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
78719914 GAGTTGAAGA
* *
78719924 AAGATGAAAGATAAAAAGTTGAAAAGG
1 AAGATGAAAGATAAAAAGTTAAAAAAG
*
78719951 AAGATGAAAAATAAAAAGTTAAAAAAG
1 AAGATGAAAGATAAAAAGTTAAAAAAG
*
78719978 AAGATGAAAGGTAAAA
1 AAGATGAAAGATAAAA
78719994 GATTAATTAT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.64, C:0.00, G:0.21, T:0.14
Consensus pattern (27 bp):
AAGATGAAAGATAAAAAGTTAAAAAAG
Found at i:78720297 original size:6 final size:6
Alignment explanation
Indices: 78720286--78720317 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
78720276 AGTTTCTCGA
78720286 CGGTGC CGGTGC CGGTGC CGGTGC CGGTGC CG
1 CGGTGC CGGTGC CGGTGC CGGTGC CGGTGC CG
78720318 ATGAAGGGGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.34, G:0.50, T:0.16
Consensus pattern (6 bp):
CGGTGC
Found at i:78732312 original size:3 final size:3
Alignment explanation
Indices: 78732304--78732372 Score: 84
Period size: 3 Copynumber: 23.0 Consensus size: 3
78732294 TTTTCATTCC
* * * *
78732304 ATT ATT ATT ACT ATT ATT ATT ATT ATT CTT TTT ATT ATT ATC ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
78732352 ATT ACT ATT ACT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT
78732373 TTAAAATTAT
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:78735632 original size:104 final size:104
Alignment explanation
Indices: 78735510--78735733 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
78735500 AATGGATATC
78735510 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
78735575 GGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATCA-CGCACATAGCACCACCAATAAACCGGGGAATCA
78735614 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
78735679 GGATCACGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
**
78735718 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
78735734 TTTATATACA
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:78736095 original size:29 final size:29
Alignment explanation
Indices: 78736062--78736125 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
78736052 TAATCCACCA
78736062 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
78736091 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
78736121 CCCAA
1 CCCAA
78736126 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:78736099 original size:30 final size:30
Alignment explanation
Indices: 78736069--78736125 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
78736059 CCACCCAACT
78736069 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
78736098 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
78736126 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:78748887 original size:3 final size:3
Alignment explanation
Indices: 78748879--78748945 Score: 80
Period size: 3 Copynumber: 22.3 Consensus size: 3
78748869 ATAATTTTAA
* * * *
78748879 AAT AAT AAT AAT AGT AAT AAT AAT GAT AAT AAT AAG AAT AAT AAG AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
78748927 AAT AAT AGT AGT AAT AAT A
1 AAT AAT AAT AAT AAT AAT A
78748946 TTGGAATGAA
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.61, C:0.00, G:0.09, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:78749022 original size:13 final size:13
Alignment explanation
Indices: 78749014--78749038 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
78749004 AGAAAATATA
78749014 TATAAAAAACAAT
1 TATAAAAAACAAT
78749027 TATAAAAAACAA
1 TATAAAAAACAA
78749039 AAAAAATATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.20
Consensus pattern (13 bp):
TATAAAAAACAAT
Found at i:78753338 original size:48 final size:48
Alignment explanation
Indices: 78753267--78753365 Score: 171
Period size: 48 Copynumber: 2.1 Consensus size: 48
78753257 AGTTCTTGAA
* *
78753267 AACAAAGTAGGAAACATCTTGGCAAGAACAATAAATGACGAATGTCCT
1 AACAAAGTAGGAAAAATATTGGCAAGAACAATAAATGACGAATGTCCT
*
78753315 AACAAAGTAGGAAAAATATTGGCAAGAACAGTAAATGACGAATGTCCT
1 AACAAAGTAGGAAAAATATTGGCAAGAACAATAAATGACGAATGTCCT
78753363 AAC
1 AAC
78753366 TGCCTATGCC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.18
Consensus pattern (48 bp):
AACAAAGTAGGAAAAATATTGGCAAGAACAATAAATGACGAATGTCCT
Found at i:78759253 original size:22 final size:23
Alignment explanation
Indices: 78759227--78759278 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
78759217 AGATTTAAGG
78759227 TTTTATT-AAGAAATTTTTT-AAT
1 TTTTATTCAAG-AATTTTTTAAAT
**
78759249 TTTTATTCAAGTCTTTTTTAAAT
1 TTTTATTCAAGAATTTTTTAAAT
78759272 TTTTATT
1 TTTTATT
78759279 TAAAAAATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 13 0.50
23 13 0.50
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.63
Consensus pattern (23 bp):
TTTTATTCAAGAATTTTTTAAAT
Found at i:78759326 original size:20 final size:19
Alignment explanation
Indices: 78759291--78759337 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
78759281 AAAAATATTT
* *
78759291 AAAATTTCTCATTAAGTCTC
1 AAAATTT-TAATTAAGCCTC
78759311 AAAGATTTTAATTAAGCCTC
1 AAA-ATTTTAATTAAGCCTC
78759331 AAAATTT
1 AAAATTT
78759338 ATTATCAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 4 0.17
20 16 0.67
21 4 0.17
ACGTcount: A:0.40, C:0.15, G:0.06, T:0.38
Consensus pattern (19 bp):
AAAATTTTAATTAAGCCTC
Found at i:78759366 original size:50 final size:50
Alignment explanation
Indices: 78759311--78759411 Score: 193
Period size: 50 Copynumber: 2.0 Consensus size: 50
78759301 ATTAAGTCTC
78759311 AAAGATTTTAATTAAGCCTCAAAATTTATTATCAATTAGACTTGTTTAAG
1 AAAGATTTTAATTAAGCCTCAAAATTTATTATCAATTAGACTTGTTTAAG
*
78759361 AAAGATTTTAATTAAGCCTCAAAATTTATTATCCATTAGACTTGTTTAAG
1 AAAGATTTTAATTAAGCCTCAAAATTTATTATCAATTAGACTTGTTTAAG
78759411 A
1 A
78759412 GTTGGACTAC
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.40, C:0.11, G:0.10, T:0.40
Consensus pattern (50 bp):
AAAGATTTTAATTAAGCCTCAAAATTTATTATCAATTAGACTTGTTTAAG
Found at i:78759903 original size:5 final size:5
Alignment explanation
Indices: 78759893--78759917 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
78759883 ATATACTATG
78759893 TAAAT TAAAT TAAAT TAAAT TAAAT
1 TAAAT TAAAT TAAAT TAAAT TAAAT
78759918 ATATAATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TAAAT
Found at i:78767484 original size:15 final size:16
Alignment explanation
Indices: 78767461--78767490 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
78767451 GGATTTAATT
78767461 TTTATATTTTAATTTG
1 TTTATATTTTAATTTG
78767477 TTTA-ATTTTAATTT
1 TTTATATTTTAATTT
78767491 TAATTTTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (16 bp):
TTTATATTTTAATTTG
Found at i:78767500 original size:23 final size:23
Alignment explanation
Indices: 78767454--78767496 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 23
78767444 TTGTTATGGA
78767454 TTTAATTTTTATATTTTAATTTG
1 TTTAATTTTTATATTTTAATTTG
78767477 TTTAA-TTTTA-ATTTTAATTT
1 TTTAATTTTTATATTTTAATTT
78767497 TTGTATTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 10 0.50
22 5 0.25
23 5 0.25
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (23 bp):
TTTAATTTTTATATTTTAATTTG
Found at i:78772479 original size:31 final size:30
Alignment explanation
Indices: 78772386--78772487 Score: 107
Period size: 31 Copynumber: 3.3 Consensus size: 30
78772376 AATTACTCAC
78772386 ATTAAATTAATAAAATATTATCAAGATAAAT
1 ATTAAATTAATAAAATA-TATCAAGATAAAT
* * ** * * *
78772417 ATTCAATCAAATCTAATATCTC-ACATTAAT
1 ATTAAAT-TAATAAAATATATCAAGATAAAT
78772447 ATTAAATTAATAAAATACTATCAAGATAAAT
1 ATTAAATTAATAAAATA-TATCAAGATAAAT
78772478 ATTAAATTAA
1 ATTAAATTAA
78772488 ATTTAATATT
Statistics
Matches: 54, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
29 7 0.13
30 15 0.28
31 25 0.46
32 7 0.13
ACGTcount: A:0.54, C:0.09, G:0.02, T:0.35
Consensus pattern (30 bp):
ATTAAATTAATAAAATATATCAAGATAAAT
Found at i:78782769 original size:50 final size:51
Alignment explanation
Indices: 78782706--78782834 Score: 181
Period size: 50 Copynumber: 2.5 Consensus size: 51
78782696 GATCATGGCA
* * *
78782706 ACAAATGATAAGTGATAGCTTCGGCTACACTTATCTGATCATTGA-AAGGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAA-ATG
78782757 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
* * *
78782807 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
78782835 CTGATCAGTG
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
50 44 0.63
51 26 0.37
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
Found at i:78782848 original size:31 final size:31
Alignment explanation
Indices: 78782810--78782958 Score: 219
Period size: 31 Copynumber: 4.8 Consensus size: 31
78782800 ACAAATGACA
*
78782810 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
** *
78782841 AGTGAAAAGTGGTAGCTTCTACTACTTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
78782872 AGTGAAAAGTGGTAG-TTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTT-CGGCTACCTGATC
* *
78782903 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
78782934 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
78782959 AAGTGACAAG
Statistics
Matches: 105, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
30 2 0.02
31 102 0.97
32 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:78782969 original size:7 final size:7
Alignment explanation
Indices: 78782957--78782992 Score: 72
Period size: 7 Copynumber: 5.1 Consensus size: 7
78782947 AGCTTCGGCT
78782957 ACAAGTG
1 ACAAGTG
78782964 ACAAGTG
1 ACAAGTG
78782971 ACAAGTG
1 ACAAGTG
78782978 ACAAGTG
1 ACAAGTG
78782985 ACAAGTG
1 ACAAGTG
78782992 A
1 A
78782993 TTTCCGTATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.44, C:0.14, G:0.28, T:0.14
Consensus pattern (7 bp):
ACAAGTG
Found at i:78783114 original size:46 final size:47
Alignment explanation
Indices: 78782998--78783119 Score: 149
Period size: 47 Copynumber: 2.6 Consensus size: 47
78782988 AGTGATTTCC
* * *
78782998 GTATAAGACCATATATGGGATATGGCATCGGTGTGATATATGCTACA
1 GTATAAGACCATATATGGGATATGGCATCAGTGAGATATATGATACA
** * *
78783045 GTATAAGACCATATCCGGGATATGGCATCAGTGAGATATGTGATTC-
1 GTATAAGACCATATATGGGATATGGCATCAGTGAGATATATGATACA
*
78783091 GTGTAAGACCATA-ATTGGGATATGGCATC
1 GTATAAGACCATATA-TGGGATATGGCATC
78783120 GATATATGAA
Statistics
Matches: 64, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
46 25 0.39
47 39 0.61
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (47 bp):
GTATAAGACCATATATGGGATATGGCATCAGTGAGATATATGATACA
Found at i:78783183 original size:42 final size:40
Alignment explanation
Indices: 78783091--78783203 Score: 129
Period size: 40 Copynumber: 2.8 Consensus size: 40
78783081 TATGTGATTC
* *
78783091 GTGTAAGACCATAATTGGGATATGGCATCGATATATGAAT
1 GTGTAAGACCATAGTTGGGCTATGGCATCGATATATGAAT
* * *
78783131 ATGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGTTGGGCTATGGCATCGA-TATATG-A-AT
**
78783173 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGTTGGGCTATGGCATCGA
78783204 GAAAACGAAG
Statistics
Matches: 60, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.02
40 30 0.50
41 1 0.02
42 27 0.45
43 1 0.02
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (40 bp):
GTGTAAGACCATAGTTGGGCTATGGCATCGATATATGAAT
Found at i:78784663 original size:18 final size:16
Alignment explanation
Indices: 78784633--78784669 Score: 56
Period size: 18 Copynumber: 2.2 Consensus size: 16
78784623 CATTATGGTT
78784633 TTATATTAGATTATTA
1 TTATATTAGATTATTA
78784649 TTATAATTAGTATTATTA
1 TTAT-ATTAG-ATTATTA
78784667 TTA
1 TTA
78784670 AATAAATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.21
17 5 0.26
18 10 0.53
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (16 bp):
TTATATTAGATTATTA
Found at i:78785954 original size:37 final size:38
Alignment explanation
Indices: 78785913--78785988 Score: 102
Period size: 37 Copynumber: 2.0 Consensus size: 38
78785903 ACTGGGTACC
*
78785913 ACTTTACTTCG-GCTAGGCCGATGAA-CACTGGGTGTCA
1 ACTTTACTTCGAACTA-GCCGATGAAGCACTGGGTGTCA
* *
78785950 ACTTTGCTTCGAACTATCCGATGAAGCACTGGGTGTCA
1 ACTTTACTTCGAACTAGCCGATGAAGCACTGGGTGTCA
78785988 A
1 A
78785989 ATTAGTGTGT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
37 18 0.53
38 16 0.47
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.28
Consensus pattern (38 bp):
ACTTTACTTCGAACTAGCCGATGAAGCACTGGGTGTCA
Found at i:78787105 original size:20 final size:20
Alignment explanation
Indices: 78787080--78787142 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 20
78787070 GTTCAACTAG
78787080 TTTTGGGTCTCG-GTCTCAAT
1 TTTTGGGTCTCGAGTC-CAAT
*
78787100 TTTTGGTTCTCGAGTCCAAT
1 TTTTGGGTCTCGAGTCCAAT
** *
78787120 TTTT-TATCTCAAGTCCAAT
1 TTTTGGGTCTCGAGTCCAAT
78787139 TTTT
1 TTTT
78787143 AAATTCAATT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
19 16 0.42
20 19 0.50
21 3 0.08
ACGTcount: A:0.16, C:0.19, G:0.16, T:0.49
Consensus pattern (20 bp):
TTTTGGGTCTCGAGTCCAAT
Found at i:78787150 original size:19 final size:19
Alignment explanation
Indices: 78787107--78787144 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
78787097 AATTTTTGGT
* *
78787107 TCTCGAGTCCAATTTTTTA
1 TCTCAAGTCCAATTTTTAA
78787126 TCTCAAGTCCAATTTTTAA
1 TCTCAAGTCCAATTTTTAA
78787145 ATTCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.26, C:0.21, G:0.08, T:0.45
Consensus pattern (19 bp):
TCTCAAGTCCAATTTTTAA
Found at i:78788943 original size:27 final size:25
Alignment explanation
Indices: 78788910--78788987 Score: 86
Period size: 27 Copynumber: 3.0 Consensus size: 25
78788900 TGTAATAATG
78788910 ATATATACACAATATGGTATTAAGAA
1 ATATATACACAATATGGTATTAA-AA
* *
78788936 TATATATATACAATATAGTATTTAAAA
1 -ATATATACACAATATGGTA-TTAAAA
* *
78788963 ATATATACATAAGATGGTA-TAAAA
1 ATATATACACAATATGGTATTAAAA
78788987 A
1 A
78788988 CATGTACATG
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
24 6 0.14
26 15 0.34
27 19 0.43
28 4 0.09
ACGTcount: A:0.53, C:0.05, G:0.09, T:0.33
Consensus pattern (25 bp):
ATATATACACAATATGGTATTAAAA
Found at i:78789176 original size:21 final size:22
Alignment explanation
Indices: 78789151--78789262 Score: 99
Period size: 21 Copynumber: 5.2 Consensus size: 22
78789141 ATATATACAT
* *
78789151 ATATA-AATAATAGTATTAGAA
1 ATATACAATAATAATATTAAAA
*
78789172 ATATACAAT-ATAATATTATAA
1 ATATACAATAATAATATTAAAA
* *
78789193 ATATACATATAATAGTATAAAAAA
1 ATATACA-ATAATAATAT-TAAAA
*
78789217 ATATA-ACTAATAATATT-AAA
1 ATATACAATAATAATATTAAAA
* *
78789237 ATATATAATAAT-ATATAAAAA
1 ATATACAATAATAATATTAAAA
78789258 ATATA
1 ATATA
78789263 ATATTGAAAA
Statistics
Matches: 75, Mismatches: 10, Indels: 12
0.77 0.10 0.12
Matches are distributed among these distances:
20 12 0.16
21 35 0.47
22 13 0.17
23 7 0.09
24 8 0.11
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.34
Consensus pattern (22 bp):
ATATACAATAATAATATTAAAA
Found at i:78789255 original size:42 final size:44
Alignment explanation
Indices: 78789157--78789263 Score: 132
Period size: 44 Copynumber: 2.5 Consensus size: 44
78789147 ACATATATAA
* * *
78789157 ATAATAGTATTAGAAATAT-ACAATATAATATTATAAATATACAT
1 ATAATAGTATAAAAAATATAACTA-ATAATATTATAAATATACAT
*
78789201 ATAATAGTATAAAAAAATATAACTAATAATATTA-AAATATATA-
1 ATAATAGTAT-AAAAAATATAACTAATAATATTATAAATATACAT
78789244 ATAATA-TATAAAAAATATAA
1 ATAATAGTATAAAAAATATAA
78789264 TATTGAAAAC
Statistics
Matches: 57, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
41 11 0.19
42 3 0.05
43 6 0.11
44 18 0.32
45 16 0.28
46 3 0.05
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.34
Consensus pattern (44 bp):
ATAATAGTATAAAAAATATAACTAATAATATTATAAATATACAT
Found at i:78789487 original size:17 final size:16
Alignment explanation
Indices: 78789461--78789492 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
78789451 CTATATATAA
78789461 ATATATATACATACAT
1 ATATATATACATACAT
78789477 ATATAATATACATACA
1 ATAT-ATATACATACA
78789493 CTAATATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.34
Consensus pattern (16 bp):
ATATATATACATACAT
Found at i:78789508 original size:3 final size:3
Alignment explanation
Indices: 78789494--78789657 Score: 65
Period size: 3 Copynumber: 54.7 Consensus size: 3
78789484 ATACATACAC
* * *
78789494 TAA TAT TAA TAA TAA TAA TAA -AA CCAGA -AA TAA TAA TAA TTAG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA -TA-A TAA TAA TAA TAA -TAA TAA
* * * ** * *
78789540 TAA TAA TACG TTA GAA -AA TAA TTAA T-A TGT TAA TAA AAA TAA TAG
1 TAA TAA TA-A TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA
* * *
78789585 TAA TGAA -AA TAA TAC TAA CAG TAA TAA TAA -AGA TAA TAA TAGA -AA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TA-A TAA
* *
78789630 TAA -AA TAA TAG TAA TAA TAT TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
78789658 TGTAAAAAAA
Statistics
Matches: 119, Mismatches: 26, Indels: 32
0.67 0.15 0.18
Matches are distributed among these distances:
2 13 0.11
3 94 0.79
4 11 0.09
5 1 0.01
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:78792112 original size:76 final size:76
Alignment explanation
Indices: 78791986--78792152 Score: 226
Period size: 76 Copynumber: 2.2 Consensus size: 76
78791976 GTAACTGTCG
* * ** * *
78791986 GTTTATCCGACTAGTGCTAAGCATACATTCAATCTCGCCGGTTTATCCGACTAGCGCAGGGCGCA
1 GTTTATCCGACTAATGCTAAGCACACATTCAATCTCGCCAATTTATCCGACTAGAGCAAGGCGCA
78792051 AATCTCTGTTA
66 AATCTCTGTTA
* * * *
78792062 GTTTATCTGACTAATGCTAGGCACACATTCGATCTCGCCAATTTATCCGACTAGAGTAAGGCGCA
1 GTTTATCCGACTAATGCTAAGCACACATTCAATCTCGCCAATTTATCCGACTAGAGCAAGGCGCA
* *
78792127 AATTTCTGTTG
66 AATCTCTGTTA
78792138 GTTTATCCGACTAAT
1 GTTTATCCGACTAAT
78792153 ATTGGGCACA
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
76 78 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (76 bp):
GTTTATCCGACTAATGCTAAGCACACATTCAATCTCGCCAATTTATCCGACTAGAGCAAGGCGCA
AATCTCTGTTA
Found at i:78794681 original size:21 final size:20
Alignment explanation
Indices: 78794655--78794693 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
78794645 ATAAAAAATT
*
78794655 TATATTTTTTTTATGAATAGG
1 TATATTATTTTTAT-AATAGG
78794676 TATATTATTTTTATAATA
1 TATATTATTTTTATAATA
78794694 TATAGCATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.59
Consensus pattern (20 bp):
TATATTATTTTTATAATAGG
Found at i:78795198 original size:15 final size:17
Alignment explanation
Indices: 78795174--78795205 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
78795164 AAAACTTATG
78795174 TTTTTCTTAAA-TAATA
1 TTTTTCTTAAAGTAATA
78795190 TTTTT-TTAAAGTAATA
1 TTTTTCTTAAAGTAATA
78795206 AAATTATTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (17 bp):
TTTTTCTTAAAGTAATA
Found at i:78796261 original size:19 final size:18
Alignment explanation
Indices: 78796237--78796275 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
78796227 GAATGACTTG
78796237 AATTAAAATCTTAATTTAA
1 AATTAAAAT-TTAATTTAA
* *
78796256 AATTAATATTTGATTTAA
1 AATTAAAATTTAATTTAA
78796274 AA
1 AA
78796276 AGCTCTTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.44
Consensus pattern (18 bp):
AATTAAAATTTAATTTAA
Found at i:78796482 original size:20 final size:20
Alignment explanation
Indices: 78796453--78796490 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
78796443 AAAATTTTAA
* *
78796453 ATAAATTAAATTCAAAATTC
1 ATAAAATAAAATCAAAATTC
78796473 ATAAAATAAAATCAAAAT
1 ATAAAATAAAATCAAAAT
78796491 AAAAAGAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (20 bp):
ATAAAATAAAATCAAAATTC
Found at i:78806614 original size:11 final size:11
Alignment explanation
Indices: 78806598--78806626 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
78806588 TATTTAATTT
78806598 TAATATTTCTA
1 TAATATTTCTA
78806609 TAATATTTCTA
1 TAATATTTCTA
78806620 TAA-ATTT
1 TAATATTT
78806627 TATGATCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.22
11 14 0.78
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (11 bp):
TAATATTTCTA
Found at i:78822909 original size:29 final size:29
Alignment explanation
Indices: 78822876--78822931 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
78822866 ATAAGGACTA
*
78822876 GATCAAATTAGTCCCT-TTACTATTAAATG
1 GATCAAATTAATCCCTATT-CTATTAAATG
*
78822905 GATCAATTTAATCCCTATTCTATTAAA
1 GATCAAATTAATCCCTATTCTATTAAA
78822932 AAAAAATCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 22 0.92
30 2 0.08
ACGTcount: A:0.36, C:0.18, G:0.07, T:0.39
Consensus pattern (29 bp):
GATCAAATTAATCCCTATTCTATTAAATG
Found at i:78824273 original size:22 final size:22
Alignment explanation
Indices: 78824248--78824307 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
78824238 AATATAATAA
* *
78824248 TGAAATGATAGCAAAACAACAG
1 TGAAATGACAACAAAACAACAG
*
78824270 TGAAATGACAATAAAACAACAG
1 TGAAATGACAACAAAACAACAG
**
78824292 TGAAACAACAACAAAA
1 TGAAATGACAACAAAA
78824308 TAATTGATTC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.60, C:0.15, G:0.13, T:0.12
Consensus pattern (22 bp):
TGAAATGACAACAAAACAACAG
Found at i:78824647 original size:16 final size:15
Alignment explanation
Indices: 78824626--78824681 Score: 67
Period size: 16 Copynumber: 3.5 Consensus size: 15
78824616 ATGATGATGG
*
78824626 ATTATTTTAGTTTTAA
1 ATTATTTTA-ATTTAA
*
78824642 ATTATTTTAAATTTAG
1 ATTATTTT-AATTTAA
78824658 ATTATTTTTAATTTAA
1 ATTA-TTTTAATTTAA
78824674 ATTATTTT
1 ATTATTTT
78824682 TTAATTTGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
15 4 0.11
16 26 0.74
17 5 0.14
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (15 bp):
ATTATTTTAATTTAA
Found at i:78824682 original size:16 final size:16
Alignment explanation
Indices: 78824637--78824693 Score: 78
Period size: 16 Copynumber: 3.5 Consensus size: 16
78824627 TTATTTTAGT
*
78824637 TTTAAATTATTTTAAA
1 TTTAAATTATTTTTAA
*
78824653 TTTAGATTATTTTTAA
1 TTTAAATTATTTTTAA
78824669 TTTAAATTATTTTTTAA
1 TTTAAATTA-TTTTTAA
*
78824686 TTTGAATT
1 TTTAAATT
78824694 GTTGCATTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
16 22 0.61
17 14 0.39
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (16 bp):
TTTAAATTATTTTTAA
Found at i:78827575 original size:29 final size:29
Alignment explanation
Indices: 78827542--78827597 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
78827532 ATAAGGACTA
*
78827542 GATCAAATTAGTCCCT-TTACTATTAAATG
1 GATCAAATTAATCCCTATT-CTATTAAATG
*
78827571 GATCAATTTAATCCCTATTCTATTAAA
1 GATCAAATTAATCCCTATTCTATTAAA
78827598 AAAAAATCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 22 0.92
30 2 0.08
ACGTcount: A:0.36, C:0.18, G:0.07, T:0.39
Consensus pattern (29 bp):
GATCAAATTAATCCCTATTCTATTAAATG
Found at i:78828939 original size:22 final size:22
Alignment explanation
Indices: 78828914--78828973 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
78828904 AATATAATAA
* *
78828914 TGAAATGATAGCAAAACAACAG
1 TGAAATGACAACAAAACAACAG
*
78828936 TGAAATGACAATAAAACAACAG
1 TGAAATGACAACAAAACAACAG
**
78828958 TGAAACAACAACAAAA
1 TGAAATGACAACAAAA
78828974 TAATTGATTC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.60, C:0.15, G:0.13, T:0.12
Consensus pattern (22 bp):
TGAAATGACAACAAAACAACAG
Found at i:78829313 original size:16 final size:15
Alignment explanation
Indices: 78829292--78829347 Score: 67
Period size: 16 Copynumber: 3.5 Consensus size: 15
78829282 ATGATGATGG
*
78829292 ATTATTTTAGTTTTAA
1 ATTATTTTA-ATTTAA
*
78829308 ATTATTTTAAATTTAG
1 ATTATTTT-AATTTAA
78829324 ATTATTTTTAATTTAA
1 ATTA-TTTTAATTTAA
78829340 ATTATTTT
1 ATTATTTT
78829348 TTAATTTGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
15 4 0.11
16 26 0.74
17 5 0.14
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (15 bp):
ATTATTTTAATTTAA
Found at i:78829348 original size:16 final size:16
Alignment explanation
Indices: 78829303--78829359 Score: 78
Period size: 16 Copynumber: 3.5 Consensus size: 16
78829293 TTATTTTAGT
*
78829303 TTTAAATTATTTTAAA
1 TTTAAATTATTTTTAA
*
78829319 TTTAGATTATTTTTAA
1 TTTAAATTATTTTTAA
78829335 TTTAAATTATTTTTTAA
1 TTTAAATTA-TTTTTAA
*
78829352 TTTGAATT
1 TTTAAATT
78829360 GTTGCATTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
16 22 0.61
17 14 0.39
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (16 bp):
TTTAAATTATTTTTAA
Found at i:78832048 original size:34 final size:34
Alignment explanation
Indices: 78831971--78832049 Score: 88
Period size: 34 Copynumber: 2.3 Consensus size: 34
78831961 TGGTATTGAG
* * *
78831971 TTGATCTGTTATAAGCATATTATTTGCAACTATG
1 TTGATCTGTTATAAGCATACTAATTGCAACTATA
* *
78832005 TTGAACTGTTATAAGCATACTAATTGCTA-TCATA
1 TTGATCTGTTATAAGCATACTAATTGCAACT-ATA
*
78832039 TTGTTCTGTTA
1 TTGATCTGTTA
78832050 AAAACATAAT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
33 1 0.03
34 36 0.97
ACGTcount: A:0.29, C:0.13, G:0.14, T:0.44
Consensus pattern (34 bp):
TTGATCTGTTATAAGCATACTAATTGCAACTATA
Found at i:78833469 original size:49 final size:46
Alignment explanation
Indices: 78833388--78833494 Score: 124
Period size: 49 Copynumber: 2.3 Consensus size: 46
78833378 TAATATAATG
** * *
78833388 ATTTTACCTTTTAACTTAATGAGTAAATATTTATCAAAATAACATA
1 ATTTTACCTTTTAACTTAAAAAGTAAACATTTATCAAAACAACATA
**
78833434 ATTTTACCTTTTAACTTTAGAAAAGATAAACATTTATCAAAACAATGTA
1 ATTTTACCTTTTAAC-TTA-AAAAG-TAAACATTTATCAAAACAACATA
*
78833483 GTTTTACCTTTT
1 ATTTTACCTTTT
78833495 CTTATTTGGA
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
46 15 0.29
47 3 0.06
48 3 0.06
49 30 0.59
ACGTcount: A:0.40, C:0.12, G:0.06, T:0.42
Consensus pattern (46 bp):
ATTTTACCTTTTAACTTAAAAAGTAAACATTTATCAAAACAACATA
Found at i:78833937 original size:101 final size:102
Alignment explanation
Indices: 78833701--78834056 Score: 342
Period size: 101 Copynumber: 3.4 Consensus size: 102
78833691 TTTTTGTTTC
* * * ** **
78833701 TTTTTTGGTGCTGCCTCTTCATGTGGAGGCACCAAAATCTGTAAAAGTAATTTATTTCTCTAATG
1 TTTTTTAGTGCCGCCTCTTCATGTGGAGGCACCAAAATCAGTAAAA--AAAATATTTCTCTGGTG
* * * * *
78833766 CCAACTCCAAATGTAGTGGCACCAATAAATTTTTTTGGA
64 CCAACTCTAAATGTGGCGGCACCAACAAATTTTTTTGAA
* * ** *
78833805 TTTTTCACTTTCGCCTCTTCATGTAGAGGCACCAAAATCAGTAAAAAAAAT-TTTC-CTGGTGCC
1 TTTTTTAGTGCCGCCTCTTCATGTGGAGGCACCAAAATCAGTAAAAAAAATATTTCTCTGGTGCC
*
78833868 AACTCTAAATGTGGCGGCACCAACAACTGTTTTTTGAA
66 AACTCTAAATGTGGCGGCACCAACAAAT-TTTTTTGAA
* *
78833906 TTTTTTAGTGCCGCCTCTTTATGTGGAGGCACCAAAATCAGTAAAAAAAAATTATTTCTCTGGTA
1 TTTTTTAGTGCCGCCTCTTCATGTGGAGGCACCAAAATCAGT-AAAAAAAA-TATTTCTCTGGTG
* * *
78833971 CTAACTCTAAATGTGGCGGCACCAATATATATATATTTT-ACA
64 CCAACTCTAAATGTGGCGGCACCAACA-A-AT-TTTTTTGA-A
** * * * *
78834013 -TTTTGGGTGTCGCCTCTTCATGTGGAGACACTAAAATCATTAAA
1 TTTTTTAGTGCCGCCTCTTCATGTGGAGGCACCAAAATCAGTAAA
78834057 TTTTTTTCTT
Statistics
Matches: 207, Mismatches: 37, Indels: 15
0.80 0.14 0.06
Matches are distributed among these distances:
100 29 0.14
101 48 0.23
102 11 0.05
103 1 0.00
104 42 0.20
105 33 0.16
106 36 0.17
107 7 0.03
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (102 bp):
TTTTTTAGTGCCGCCTCTTCATGTGGAGGCACCAAAATCAGTAAAAAAAATATTTCTCTGGTGCC
AACTCTAAATGTGGCGGCACCAACAAATTTTTTTGAA
Found at i:78834085 original size:205 final size:205
Alignment explanation
Indices: 78833701--78834087 Score: 438
Period size: 205 Copynumber: 1.9 Consensus size: 205
78833691 TTTTTGTTTC
* * * ** * *
78833701 TTTTTTGGTGCTGCCTCTTCATGTGGAGGCACCAAAATCTGTAAAAGTAATTTATTTCTCTAATG
1 TTTTTTAGTGCCGCCTCTTCATGTGGAGGCACCAAAATCAGTAAAAAAAAATTATTTCTCTAATA
* * ** *
78833766 CCAACTCCAAATGTAGTGGCACCAATAAATTTTTTTGGATTTTTCACTTTCGCCTCTTCATGTAG
66 CCAACTCCAAATGTAGCGGCACCAATAAATTATTTTACATTTTTCACTGTCGCCTCTTCATGTAG
* * *
78833831 AGGCACCAAAATCAGTAAAAAAAATTTTCCTGGTGCCAACTCTAAATGTGGCGGCACCAACAACT
131 AGACACCAAAATCAGTAAAAAAAATTTTCCTAGTGCCAACTCCAAATGTGGCGGCACCAACAACT
78833896 GTTTTTTGAA
196 GTTTTTTGAA
* **
78833906 TTTTTTAGTGCCGCCTCTTTATGTGGAGGCACCAAAATCAGTAAAAAAAAATTATTTCTCTGGTA
1 TTTTTTAGTGCCGCCTCTTCATGTGGAGGCACCAAAATCAGTAAAAAAAAATTATTTCTCTAATA
* * * ***
78833971 CTAACTCTAAATGTGGCGGCACCAATATATATATATTTTACA-TTTTGGGTGTCGCCTCTTCATG
66 CCAACTCCAAATGTAGCGGCACCAATA-A-AT-TATTTTACATTTTTCACTGTCGCCTCTTCATG
* * * *** * *
78834035 TGGAGACACTAAAATCA-T-TAAATTTTTTTCTTAGTGTCAACTCCAAATGTGGC
128 TAGAGACACCAAAATCAGTAAAAAAAATTTTCCTAGTGCCAACTCCAAATGTGGC
78834088 AGCCCAGGTA
Statistics
Matches: 147, Mismatches: 32, Indels: 6
0.79 0.17 0.03
Matches are distributed among these distances:
205 105 0.71
206 2 0.01
207 34 0.23
208 6 0.04
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (205 bp):
TTTTTTAGTGCCGCCTCTTCATGTGGAGGCACCAAAATCAGTAAAAAAAAATTATTTCTCTAATA
CCAACTCCAAATGTAGCGGCACCAATAAATTATTTTACATTTTTCACTGTCGCCTCTTCATGTAG
AGACACCAAAATCAGTAAAAAAAATTTTCCTAGTGCCAACTCCAAATGTGGCGGCACCAACAACT
GTTTTTTGAA
Found at i:78835679 original size:24 final size:25
Alignment explanation
Indices: 78835632--78835680 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
78835622 AGTATTTGTA
78835632 ATATTAGTTTTGCTATATTATTATT
1 ATATTAGTTTTGCTATATTATTATT
78835657 ATATTA-TTGTTGCT-TATTATTATT
1 ATATTAGTT-TTGCTATATTATTATT
78835681 GTTGTTGTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 12 0.52
25 11 0.48
ACGTcount: A:0.27, C:0.04, G:0.08, T:0.61
Consensus pattern (25 bp):
ATATTAGTTTTGCTATATTATTATT
Found at i:78835685 original size:19 final size:18
Alignment explanation
Indices: 78835652--78835687 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
78835642 TGCTATATTA
78835652 TTATTATATTATTGTTGC
1 TTATTATATTATTGTTGC
*
78835670 TTATTATTATTGTTGTTG
1 TTATTA-TATTATTGTTG
78835688 TGAACATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.19, C:0.03, G:0.14, T:0.64
Consensus pattern (18 bp):
TTATTATATTATTGTTGC
Found at i:78836232 original size:23 final size:22
Alignment explanation
Indices: 78836131--78836228 Score: 76
Period size: 21 Copynumber: 4.4 Consensus size: 22
78836121 ATCATTTCTA
* *
78836131 ATATATATATCGTATAT-GTTT
1 ATATATATATCATATATATTTT
*
78836152 ATGTATATATCATATATATTTT
1 ATATATATATCATATATATTTT
*
78836174 -TCA-ATATTATTAGTTATATATTTT
1 AT-ATATA-TATCA--TATATATTTT
* *
78836198 TTATACTATATCATGTATATTTT
1 ATATA-TATATCATATATATTTT
78836221 ATATATAT
1 ATATATAT
78836229 TATCCTTATT
Statistics
Matches: 61, Mismatches: 8, Indels: 15
0.73 0.10 0.18
Matches are distributed among these distances:
21 19 0.31
22 10 0.16
23 13 0.21
24 11 0.18
25 6 0.10
26 2 0.03
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.55
Consensus pattern (22 bp):
ATATATATATCATATATATTTT
Found at i:78836401 original size:22 final size:20
Alignment explanation
Indices: 78836345--78836406 Score: 54
Period size: 22 Copynumber: 2.9 Consensus size: 20
78836335 TGATGGTATG
78836345 TATATATTATGTAAATATTT
1 TATATATTATGTAAATATTT
*
78836365 TA-ACATCATATTGTAAATGCATTT
1 TATATAT--TA-TGTAAAT--ATTT
*
78836389 TATATATTATGTATATAT
1 TATATATTATGTAAATAT
78836407 ATATACCTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 12
0.69 0.06 0.25
Matches are distributed among these distances:
19 3 0.09
20 4 0.12
21 2 0.06
22 13 0.39
23 2 0.06
24 6 0.18
25 3 0.09
ACGTcount: A:0.39, C:0.05, G:0.06, T:0.50
Consensus pattern (20 bp):
TATATATTATGTAAATATTT
Found at i:78848407 original size:74 final size:74
Alignment explanation
Indices: 78848313--78848750 Score: 515
Period size: 74 Copynumber: 5.9 Consensus size: 74
78848303 TTTTGTGTTC
* * *
78848313 AAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
78848378 TGTTTGTCA
66 TGTTTGTCA
* * * * *
78848387 AAAAATCAAATCATATTGCGAGAGGTAAGTTGAGCCTCAGGTCGCACGCTGAGGAATTTT-AGTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAATT
* *
78848451 TCTATTTTTCAA
64 TCTGTTTGTC-A
* * *
78848463 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTAAGGTATTTTCAATTTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
*
78848528 TGTTTTTCA
66 TGTTTGTCA
* * * * * * * * *
78848537 AAAAATCAATTCATGTCGCTAGAGGTGAGTTGAACCTCGGGTCACATGCCGAGGTATTTTTAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAATT
* *
78848602 TATG-TT-TAA
64 TCTGTTTGTCA
** * * *
78848611 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCTTCAGGTCACGCTGAGGTATTTTCAACTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
78848676 TGTTTGTC-
66 TGTTTGTCA
* *
78848684 AAAAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
78848749 TG
66 TG
78848751 CTTCTTAAAT
Statistics
Matches: 305, Mismatches: 51, Indels: 17
0.82 0.14 0.05
Matches are distributed among these distances:
72 20 0.07
73 63 0.21
74 124 0.41
75 24 0.08
76 74 0.24
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.32
Consensus pattern (74 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
TGTTTGTCA
Found at i:78848516 original size:150 final size:147
Alignment explanation
Indices: 78848313--78848747 Score: 552
Period size: 150 Copynumber: 2.9 Consensus size: 147
78848303 TTTTGTGTTC
* * *
78848313 AAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
*
78848378 TGTTTGTCAAAAAATCAAATCATATTGCGAGAGGTAAGTTGAGCCTCAGGTCGCACGCTGAGGAA
66 TGTTTGTCAAAAAATCAAATCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCGCACGCTGAGGAA
* *
78848443 TTTTAGTTTCTATTTTTCAA
131 TTTTA-ATT-TATGTTT-AA
* * *
78848463 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTAAGGTATTTTCAATTTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
* * * * * * * * * *
78848528 TGTTTTTCAAAAAATCAATTCATGTCGCTAGAGGTGAGTTGAACCTCGGGTCACATGCCGAGGTA
66 TGTTTGTCAAAAAATCAAATCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCGCACGCTGAGG-A
*
78848593 TTTTTAATTTATGTTTAA
130 ATTTTAATTTATGTTTAA
** * * *
78848611 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCTTCAGGTCACGCTGAGGTATTTTCAACTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
* * *
78848676 TGTTTGTC-AAAAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTCAGG--GCACGCTGAGGTA
66 TGTTTGTCAAAAAATCAAATCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCGCACGCTGAGGAA
78848738 TTTTCAATTT
131 TTTT-AATTT
78848748 CTGCTTCTTA
Statistics
Matches: 242, Mismatches: 41, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
144 4 0.02
145 13 0.05
147 34 0.14
148 66 0.27
149 6 0.02
150 113 0.47
151 6 0.02
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.32
Consensus pattern (147 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
TGTTTGTCAAAAAATCAAATCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCGCACGCTGAGGAA
TTTTAATTTATGTTTAA
Found at i:78848856 original size:14 final size:13
Alignment explanation
Indices: 78848830--78848868 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
78848820 TGTCGAGGTA
78848830 TTTTCAAAATCTG
1 TTTTCAAAATCTG
*
78848843 TTTTGCAAATTCTG
1 TTTT-CAAAATCTG
78848857 TTTTCAAGAATC
1 TTTTCAA-AATC
78848869 AACTCATATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
13 7 0.32
14 15 0.68
ACGTcount: A:0.28, C:0.15, G:0.10, T:0.46
Consensus pattern (13 bp):
TTTTCAAAATCTG
Found at i:78848883 original size:88 final size:90
Alignment explanation
Indices: 78848665--78849069 Score: 343
Period size: 90 Copynumber: 4.5 Consensus size: 90
78848655 CGCTGAGGTA
* * * *
78848665 TTTTCAACTTCTGTTTGTCAAAAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTCAGGG-CAC
1 TTTTCAAATTATGTTTATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGTCAC
**
78848729 --G-CTGAGGTATTTTCAATTTCTGC
65 ATGTCTGAGGTATTTTCAAAATCTGC
* * * *
78848752 TTCTT-AAATTATATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCGCGGGT
1 TT-TTCAAATTATGTTTATC---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
78848816 CACATGTC-GAGGTATTTTCAAAATCTG-
62 CACATGTCTGAGGTATTTTCAAAATCTGC
* * * *
78848843 TTTTGCAAATTCTGTTT-TCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGT-TC
1 TTTT-CAAATTATGTTTATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAC
* **
78848905 ATGTGCTGAGGTAATTTCAATTTCTGTTC
65 ATGT-CTGAGGTATTTTCAAAATCTG--C
* ** * * * * *
78848934 TTTT--AATTATATTTAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGGGTCTTGGTTCACA
1 TTTTCAAATTATGTTTATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA
*
78848997 TGTC-AAGGTATTTTCAAAATCTGC
66 TGTCTGAGGTATTTTCAAAATCTGC
* * * *
78849021 TTTTCAAATTAAGTTTCA-AAAAAGACCAACTCATATTGCGAGAGTTGAG
1 TTTTCAAATTATGTTT-ATCAAAA-ATCAACTCATATTGCGAGAGGTGAG
78849070 CTCAGGATCG
Statistics
Matches: 257, Mismatches: 39, Indels: 41
0.76 0.12 0.12
Matches are distributed among these distances:
86 5 0.02
87 21 0.08
88 60 0.23
89 64 0.25
90 66 0.26
91 13 0.05
92 27 0.11
93 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (90 bp):
TTTTCAAATTATGTTTATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA
TGTCTGAGGTATTTTCAAAATCTGC
Found at i:78848998 original size:177 final size:178
Alignment explanation
Indices: 78848665--78849069 Score: 498
Period size: 177 Copynumber: 2.3 Consensus size: 178
78848655 CGCTGAGGTA
* *
78848665 TTTTCAACTTCTGTTTGTCAAAAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTCAGGGCACG
1 TTTTCAAATTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACG
*
78848730 CTGAGGTATTTTCAATTTCTGCTTCTTAAATTATATTTTTCAAAAAAAATCAACTCATATTGCGA
66 CTGAGGTAATTTCAATTTCTGCTTCTTAAATTATA-TTTTCAAAAAAAATCAACTCATATTGCGA
* *
78848795 GAGGTGAGTTAAGCCGCGGGTCACATGTCGAGGTATTTTCAAAATCTG-
130 GAAGTGAGTTAAGCCGCGGGTCACATGTCAAGGTATTTTCAAAATCTGC
* * *
78848843 TTTTGCAAATTCTGTTT-TCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGTTCA
1 TTTT-CAAATTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-GCA
* *
78848906 TGTGCTGAGGTAATTTCAATTTCTG-TTCTTTTAATTATA-TTT-AAAAAAAATCAACTCATATT
64 --CGCTGAGGTAATTTCAATTTCTGCTTC-TTAAATTATATTTTCAAAAAAAATCAACTCATATT
** * ** *
78848968 GCGAGAAGTGAGTTGGGTCTTGGTTCACATGTCAAGGTATTTTCAAAATCTGC
126 GCGAGAAGTGAGTTAAGCCGCGGGTCACATGTCAAGGTATTTTCAAAATCTGC
** *** * *
78849021 TTTTCAAATTAAGTTTCAAAAAAGACCAACTCATATTGCGAGAGTTGAG
1 TTTTCAAATTCTGTTTGTCAAAA-ATCAACTCATATTGCGAGAGGTGAG
78849070 CTCAGGATCG
Statistics
Matches: 196, Mismatches: 23, Indels: 15
0.84 0.10 0.06
Matches are distributed among these distances:
177 76 0.39
178 53 0.27
179 37 0.19
180 30 0.15
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (178 bp):
TTTTCAAATTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACG
CTGAGGTAATTTCAATTTCTGCTTCTTAAATTATATTTTCAAAAAAAATCAACTCATATTGCGAG
AAGTGAGTTAAGCCGCGGGTCACATGTCAAGGTATTTTCAAAATCTGC
Found at i:78850826 original size:19 final size:18
Alignment explanation
Indices: 78850796--78850831 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
78850786 TGCTACATTA
78850796 TTATTATATTATTGTTGC
1 TTATTATATTATTGTTGC
78850814 TTATTATTATTATTGTTG
1 TTATTA-TATTATTGTTG
78850832 TGAACATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.22, C:0.03, G:0.11, T:0.64
Consensus pattern (18 bp):
TTATTATATTATTGTTGC
Found at i:78850941 original size:28 final size:24
Alignment explanation
Indices: 78850913--78850960 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
78850903 GTATATGTAT
78850913 ATATAGGTAGTAATGTTTTATTAC
1 ATATAGGTAGTAATGTTTTATTAC
78850937 ATATAGGTAGTAATGTTTTATTAC
1 ATATAGGTAGTAATGTTTTATTAC
78850961 TTTATTTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.04, G:0.17, T:0.46
Consensus pattern (24 bp):
ATATAGGTAGTAATGTTTTATTAC
Found at i:78851361 original size:24 final size:24
Alignment explanation
Indices: 78851334--78851404 Score: 81
Period size: 24 Copynumber: 2.9 Consensus size: 24
78851324 GTATATATCA
78851334 TATATATTTTTTAATATTATTAGT-
1 TATATATTTTTT-ATATTATTAGTG
* *
78851358 TATATATTTTTTATACTATATCGTG
1 TATATATTTTTTATATTAT-TAGTG
*
78851383 TATATTTTTTTTATATATATTA
1 TATATATTTTTTATAT-TATTA
78851405 TCCTTATTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
23 6 0.15
24 15 0.38
25 15 0.38
26 3 0.08
ACGTcount: A:0.31, C:0.03, G:0.04, T:0.62
Consensus pattern (24 bp):
TATATATTTTTTATATTATTAGTG
Found at i:78851575 original size:22 final size:20
Alignment explanation
Indices: 78851519--78851580 Score: 54
Period size: 22 Copynumber: 2.9 Consensus size: 20
78851509 TCATGGTATG
78851519 TATATATTATGTAAATATTT
1 TATATATTATGTAAATATTT
*
78851539 TA-ACATCATATTGTAAATGCATTT
1 TATATAT--TA-TGTAAAT--ATTT
*
78851563 TATATATTATGTATATAT
1 TATATATTATGTAAATAT
78851581 ATACCTTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 12
0.69 0.06 0.25
Matches are distributed among these distances:
19 3 0.09
20 4 0.12
21 2 0.06
22 13 0.39
23 2 0.06
24 6 0.18
25 3 0.09
ACGTcount: A:0.39, C:0.05, G:0.06, T:0.50
Consensus pattern (20 bp):
TATATATTATGTAAATATTT
Found at i:78854029 original size:30 final size:29
Alignment explanation
Indices: 78853995--78854063 Score: 79
Period size: 28 Copynumber: 2.4 Consensus size: 29
78853985 AAAGCAGTAA
78853995 ATAAATGAAATCG-TTTAGAAATCAAAACAG
1 ATAAATGAAATCGCTTTA-AAAT-AAAACAG
* *
78854025 ATAAATGAAA-GGCTTTAAACTAAAACAG
1 ATAAATGAAATCGCTTTAAAATAAAACAG
*
78854053 AAAAATGAAAT
1 ATAAATGAAAT
78854064 GCTAACCCTA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
28 16 0.47
29 4 0.12
30 14 0.41
ACGTcount: A:0.57, C:0.09, G:0.13, T:0.22
Consensus pattern (29 bp):
ATAAATGAAATCGCTTTAAAATAAAACAG
Found at i:78859928 original size:26 final size:26
Alignment explanation
Indices: 78859892--78860001 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
78859882 TGATACAAAT
*
78859892 TGATAATAGGTTAGGTAAATATTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
78859918 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
78859944 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
78859970 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
78859996 TGATAA
1 TGATAA
78860002 GAATTTCATG
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:78862298 original size:19 final size:18
Alignment explanation
Indices: 78862271--78862306 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
78862261 TTTATTCATT
*
78862271 AATTTAATAATATAATATC
1 AATTAAATAATA-AATATC
78862290 AATTAAATAATAAATAT
1 AATTAAATAATAAATAT
78862307 AATAAGTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (18 bp):
AATTAAATAATAAATATC
Found at i:78862593 original size:11 final size:12
Alignment explanation
Indices: 78862571--78862621 Score: 61
Period size: 11 Copynumber: 4.2 Consensus size: 12
78862561 AATTTGTTTC
78862571 ATAATATATAAT
1 ATAATATATAAT
78862583 ATAAT-TATAAT
1 ATAATATATAAT
*
78862594 ATAATCTAATAAT
1 ATAATAT-ATAAT
78862607 AATAATATAT-AT
1 -ATAATATATAAT
78862619 ATA
1 ATA
78862622 CCTAAGAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
11 14 0.40
12 8 0.23
13 7 0.20
14 6 0.17
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (12 bp):
ATAATATATAAT
Found at i:78862597 original size:16 final size:16
Alignment explanation
Indices: 78862571--78862610 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
78862561 AATTTGTTTC
78862571 ATAAT-ATATAATATA
1 ATAATAATATAATATA
* *
78862586 ATTATAATATAATCTA
1 ATAATAATATAATATA
78862602 ATAATAATA
1 ATAATAATA
78862611 ATATATATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 4 0.19
16 17 0.81
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (16 bp):
ATAATAATATAATATA
Found at i:78863350 original size:14 final size:13
Alignment explanation
Indices: 78863341--78863378 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
78863331 ATTAATATTG
78863341 TAATTATAATTTA
1 TAATTATAATTTA
78863354 TAATTTATAATTTA
1 TAA-TTATAATTTA
*
78863368 TAATGATAATT
1 TAATTATAATT
78863379 ATTTATTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 10 0.43
14 13 0.57
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (13 bp):
TAATTATAATTTA
Found at i:78863391 original size:7 final size:7
Alignment explanation
Indices: 78863344--78863371 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
78863334 AATATTGTAA
78863344 TTATAAT
1 TTATAAT
78863351 TTATAAT
1 TTATAAT
78863358 TTATAAT
1 TTATAAT
78863365 TTATAAT
1 TTATAAT
78863372 GATAATTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
TTATAAT
Found at i:78863645 original size:44 final size:44
Alignment explanation
Indices: 78863593--78863676 Score: 159
Period size: 44 Copynumber: 1.9 Consensus size: 44
78863583 CTCTATTGAT
78863593 TTTAGTTTGCATAAAATGAAAAACTTGAATTTTTAAATTTAACC
1 TTTAGTTTGCATAAAATGAAAAACTTGAATTTTTAAATTTAACC
*
78863637 TTTAGTTTGCATAATATGAAAAACTTGAATTTTTAAATTT
1 TTTAGTTTGCATAAAATGAAAAACTTGAATTTTTAAATTT
78863677 GATCCAATTT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.39, C:0.07, G:0.10, T:0.44
Consensus pattern (44 bp):
TTTAGTTTGCATAAAATGAAAAACTTGAATTTTTAAATTTAACC
Found at i:78873959 original size:15 final size:17
Alignment explanation
Indices: 78873932--78873967 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
78873922 CGATAGACAC
78873932 AAAATTGGAAAGA-TAG
1 AAAATTGGAAAGAGTAG
78873948 AAAATT-GAAAGAGTAG
1 AAAATTGGAAAGAGTAG
78873964 AAAA
1 AAAA
78873968 AACAGAAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.61, C:0.00, G:0.22, T:0.17
Consensus pattern (17 bp):
AAAATTGGAAAGAGTAG
Found at i:78878192 original size:7 final size:7
Alignment explanation
Indices: 78878180--78878207 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
78878170 AAAGAGTTTG
78878180 ATTGGAT
1 ATTGGAT
78878187 ATTGGAT
1 ATTGGAT
78878194 ATTGGAT
1 ATTGGAT
78878201 ATTGGAT
1 ATTGGAT
78878208 TTTTTATTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.43
Consensus pattern (7 bp):
ATTGGAT
Found at i:78885797 original size:180 final size:179
Alignment explanation
Indices: 78885488--78885850 Score: 520
Period size: 180 Copynumber: 2.0 Consensus size: 179
78885478 TGTATACTAG
* * *
78885488 ATTTCTCCTTTTTATTTGTTTCCCTTGGTATTAGGCAGTTGACAGTTGTGTTTGTCTCTTATCTC
1 ATTTCTCCTTTTTATTTGTTTCCCTTGATATTAGGCAGTTGACAGTTGCG--TCTCTCTTATCTC
* *
78885553 TTTCCTTTTTAATCCTACTGGTATGCCTTCTTTCATTTCTTTTGTATTAAATGTCACATGTTTTG
64 TTTCCTTTTTAATCCTACTGATATGCCTTCTTTCATTTCCTTTGTATTAAATGTCACATGTTTTG
*
78885618 GCTTATAAAATGGTCTTCATTATTTTATTCATATTGCTTTTGATTGAGCTTCATCTA
129 GCTTATAAAATGG---TC--T-TTCTATTCATATTGCTTTTGATTGAGCTTCATCTA
78885675 ATTTCTCCTTTTTATTTGTTTCCCTTGATATTAGGCAGTTG-C-GTT-CG-CT-TCTTATCTCTT
1 ATTTCTCCTTTTTATTTGTTTCCCTTGATATTAGGCAGTTGACAGTTGCGTCTCTCTTATCTCTT
* *
78885735 TCCTTTTTAATGCTGCTGATATGCCTTCTTTCATTTCCTTTGTATTAAATGTCACATGTTTTGGC
66 TCCTTTTTAATCCTACTGATATGCCTTCTTTCATTTCCTTTGTATTAAATGTCACATGTTTTGGC
* * *
78885800 TTATAAAGTGGTCTTTCTATTCATATTGCTTTTGGTTGAGCTTCGTCTA
131 TTATAAAATGGTCTTTCTATTCATATTGCTTTTGATTGAGCTTCATCTA
78885849 AT
1 AT
78885851 ATCTGAATAC
Statistics
Matches: 165, Mismatches: 11, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
174 34 0.21
175 1 0.01
177 2 0.01
180 82 0.50
181 1 0.01
184 1 0.01
185 3 0.02
186 1 0.01
187 40 0.24
ACGTcount: A:0.17, C:0.18, G:0.14, T:0.51
Consensus pattern (179 bp):
ATTTCTCCTTTTTATTTGTTTCCCTTGATATTAGGCAGTTGACAGTTGCGTCTCTCTTATCTCTT
TCCTTTTTAATCCTACTGATATGCCTTCTTTCATTTCCTTTGTATTAAATGTCACATGTTTTGGC
TTATAAAATGGTCTTTCTATTCATATTGCTTTTGATTGAGCTTCATCTA
Found at i:78889108 original size:15 final size:15
Alignment explanation
Indices: 78889088--78889117 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
78889078 TATACTTGGA
78889088 AGTGACTTATTCTTC
1 AGTGACTTATTCTTC
78889103 AGTGACTTATTCTTC
1 AGTGACTTATTCTTC
78889118 TTGTGTCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.47
Consensus pattern (15 bp):
AGTGACTTATTCTTC
Found at i:78902419 original size:24 final size:24
Alignment explanation
Indices: 78902372--78902420 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
78902362 ATTTTGGTAA
78902372 ATAATACATAATTAATATTTTCAT
1 ATAATACATAATTAATATTTTCAT
78902396 ATAATACATAATTAATATTTTCAT
1 ATAATACATAATTAATATTTTCAT
78902420 A
1 A
78902421 CATTTATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.45
Consensus pattern (24 bp):
ATAATACATAATTAATATTTTCAT
Found at i:78907113 original size:20 final size:21
Alignment explanation
Indices: 78907074--78907114 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
78907064 TTCAATACTA
78907074 ATATAAATGGAAACATTAAAT
1 ATATAAATGGAAACATTAAAT
*
78907095 ATATAAATTGAAA-ATTAAAT
1 ATATAAATGGAAACATTAAAT
78907115 GTTCAATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.32
Consensus pattern (21 bp):
ATATAAATGGAAACATTAAAT
Found at i:78908366 original size:46 final size:46
Alignment explanation
Indices: 78908299--78908467 Score: 275
Period size: 46 Copynumber: 3.7 Consensus size: 46
78908289 CCCGCCCCTA
78908299 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATG
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATG
78908345 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATG
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATG
* * * *
78908391 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATG
* * *
78908437 AGTGAACTCAGACTCAACTCAGCGAGTTCGG
1 AGTGAACTCGGACTCAACTCAACGAGCTCGG
78908468 ATGCCCAAAC
Statistics
Matches: 117, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 117 1.00
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.20
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATG
Found at i:78913175 original size:23 final size:24
Alignment explanation
Indices: 78913139--78913183 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
78913129 TAAAGAAATG
*
78913139 GAAAAAAAAGAGAAAGAAAATGAT
1 GAAAAAAAAGAGAAAAAAAATGAT
*
78913163 GAAAACAAA-AGAAAAAAAATG
1 GAAAAAAAAGAGAAAAAAAATG
78913184 TGTCCATCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.73, C:0.02, G:0.18, T:0.07
Consensus pattern (24 bp):
GAAAAAAAAGAGAAAAAAAATGAT
Found at i:78914508 original size:40 final size:39
Alignment explanation
Indices: 78914424--78914608 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 39
78914414 TCGAATGATG
* * * *
78914424 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
78914464 TCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
78914504 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
78914543 TCCGGGTTAAGTCCCGAAGGTATTTGTGCGAGCTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
78914584 -CCGTGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
78914609 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 34 0.28
40 77 0.64
41 9 0.08
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:78914560 original size:79 final size:81
Alignment explanation
Indices: 78914424--78914606 Score: 196
Period size: 79 Copynumber: 2.3 Consensus size: 81
78914414 TCGAATGATG
* *
78914424 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
*
78914488 TGTACGAGTTACTA-A
66 TGTACGAGCTACTATA
* * * ** *
78914503 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGTA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
78914565 TTTGTGCGAGCTACTATA
64 TTTGTACGAGCTACTATA
* * *
78914583 ACCGTGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
78914607 TGAACGAGTA
Statistics
Matches: 86, Mismatches: 13, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 55 0.64
80 30 0.35
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTACGAGCTACTATA
Found at i:78922546 original size:79 final size:81
Alignment explanation
Indices: 78922410--78922594 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
78922400 TTGAATGATG
*
78922410 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
78922474 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
78922489 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
78922551 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
78922569 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
78922595 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:78922608 original size:40 final size:40
Alignment explanation
Indices: 78922411--78922594 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
78922401 TGAATGATGT
* * * *
78922411 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
78922451 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
78922491 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
78922529 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
78922570 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
78922595 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:78922616 original size:79 final size:79
Alignment explanation
Indices: 78922463--78922627 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
78922453 GGACTAAGAT
* **
78922463 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
78922528 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
78922542 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
78922605 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
78922621 CCGAAGG
1 CCGAAGG
78922628 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:78925225 original size:33 final size:33
Alignment explanation
Indices: 78925186--78925254 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
78925176 ACAAACATAC
*
78925186 AAAGTAATAATTAAATAATGCATGATATACAAA
1 AAAGTAATAATTAAATAATGCATGACATACAAA
78925219 AAAGTAATAATTAAATAATGCATGACATACAAA
1 AAAGTAATAATTAAATAATGCATGACATACAAA
78925252 AAA
1 AAA
78925255 AAGTAATACA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.59, C:0.07, G:0.09, T:0.25
Consensus pattern (33 bp):
AAAGTAATAATTAAATAATGCATGACATACAAA
Found at i:78925620 original size:15 final size:15
Alignment explanation
Indices: 78925564--78925620 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
78925554 AAAAGAATTT
* *
78925564 ATAAAATAACACATA
1 ATAAAAAAATACATA
* *
78925579 ATATAAAAATATCATC
1 ATAAAAAAATA-CATA
* *
78925595 TTAAAATAATACATA
1 ATAAAAAAATACATA
78925610 ATAAAAAAATA
1 ATAAAAAAATA
78925621 ATTAATAATT
Statistics
Matches: 31, Mismatches: 10, Indels: 2
0.72 0.23 0.05
Matches are distributed among these distances:
15 20 0.65
16 11 0.35
ACGTcount: A:0.65, C:0.09, G:0.00, T:0.26
Consensus pattern (15 bp):
ATAAAAAAATACATA
Found at i:78925735 original size:27 final size:27
Alignment explanation
Indices: 78925687--78925738 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
78925677 TTTAGAATTT
* *
78925687 TAAATAATGTAATGAATGATATAAATA
1 TAAATAATATAATGAATAATATAAATA
78925714 TAAATAATATAAT-AGATAATATAAA
1 TAAATAATATAATGA-ATAATATAAA
78925739 AAATAAGTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 1 0.05
27 21 0.95
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.33
Consensus pattern (27 bp):
TAAATAATATAATGAATAATATAAATA
Found at i:78925838 original size:29 final size:28
Alignment explanation
Indices: 78925778--78925846 Score: 72
Period size: 29 Copynumber: 2.5 Consensus size: 28
78925768 TTATATAATA
* *
78925778 AAATATAATTTAAATATATAGGAAATAAG
1 AAATATAATATATATATATA-GAAATAAG
78925807 AAATATAATATATATAATATA-AAATAACG
1 AAATATAATATATAT-ATATAGAAATAA-G
78925836 AAA-AT-ATATAT
1 AAATATAATATAT
78925847 GTACGAACAA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
27 6 0.17
28 8 0.22
29 17 0.47
30 5 0.14
ACGTcount: A:0.61, C:0.01, G:0.06, T:0.32
Consensus pattern (28 bp):
AAATATAATATATATATATAGAAATAAG
Found at i:78927964 original size:164 final size:165
Alignment explanation
Indices: 78927787--78928124 Score: 527
Period size: 165 Copynumber: 2.1 Consensus size: 165
78927777 ACACGTGAAA
* *
78927787 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAAGATGCTAAATCATCTTGGATC-
1 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAAGATACCAAATCATCTTGGATCT
* ** * *
78927851 TGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTTCTCC-TCGTTGAAGTGGAGAT
66 TGCTTCAATATAAACATCTGAAGGCCAGATCTGCTATGTATCTGC-CCTTCGTCGAAGTGGAGAT
*
78927915 GCTAGACTTCGATTTGCTCTCTGACAATACAGAGAT
130 GCCAGACTTCGATTTGCTCTCTGACAATACAGAGAT
* *
78927951 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAATCATTTTGGATCT
1 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAAGATACCAAATCATCTTGGATCT
* * *
78928016 TGCTTCAATCTAATCATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTTCGTCGAAGTGGAGATG
66 TGCTTCAATATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCCCTTCGTCGAAGTGGAGATG
*
78928081 CCAGACTTCGATTTGCTCTCTGCCAATACAGAGAT
131 CCAGACTTCGATTTGCTCTCTGACAATACAGAGAT
78928116 GCCAAATCA
1 GCCAAATCA
78928125 TCATAGATTT
Statistics
Matches: 158, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
164 62 0.39
165 96 0.61
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (165 bp):
GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAAGATACCAAATCATCTTGGATCT
TGCTTCAATATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCCCTTCGTCGAAGTGGAGATG
CCAGACTTCGATTTGCTCTCTGACAATACAGAGAT
Done.