Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 239 of 276
Found at i:78939866 original size:33 final size:33
Alignment explanation
Indices: 78939827--78939895 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
78939817 ACAAACATAC
*
78939827 AAAGTAATAATTAAATAATGCATGATATACAAA
1 AAAGTAATAATTAAATAATGCATGACATACAAA
78939860 AAAGTAATAATTAAATAATGCATGACATACAAA
1 AAAGTAATAATTAAATAATGCATGACATACAAA
78939893 AAA
1 AAA
78939896 AAGTAATACA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.59, C:0.07, G:0.09, T:0.25
Consensus pattern (33 bp):
AAAGTAATAATTAAATAATGCATGACATACAAA
Found at i:78940229 original size:31 final size:32
Alignment explanation
Indices: 78940189--78940249 Score: 90
Period size: 31 Copynumber: 1.9 Consensus size: 32
78940179 ATGTAAAAGA
78940189 ATTTATAAAATAACACATAATATAA-AAATATC
1 ATTTATAAAATAACACATAATA-AATAAATATC
*
78940221 ATTT-TAAAATAATACATAATAAATAAATA
1 ATTTATAAAATAACACATAATAAATAAATA
78940250 ATTAATAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 2 0.07
31 21 0.78
32 4 0.15
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.33
Consensus pattern (32 bp):
ATTTATAAAATAACACATAATAAATAAATATC
Found at i:78940364 original size:27 final size:26
Alignment explanation
Indices: 78940316--78940380 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 26
78940306 TTTAGAATTT
* *
78940316 TAAATAATGTAATGAATGATATAAATA
1 TAAATAATATAATGAATAATATAAA-A
78940343 TAAATAATATAAT-AGATAATATAAAA
1 TAAATAATATAATGA-ATAATATAAAA
78940369 -AAAGTAATATAA
1 TAAA-TAATATAA
78940381 AAATACAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
25 3 0.09
26 10 0.29
27 21 0.62
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (26 bp):
TAAATAATATAATGAATAATATAAAA
Found at i:78940505 original size:18 final size:18
Alignment explanation
Indices: 78940482--78940531 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
78940472 ATGTAAGAAA
78940482 AATATATAAATAATTAAT
1 AATATATAAATAATTAAT
78940500 AATATATAATATAA-TAAT
1 AATATATAA-ATAATTAAT
*
78940518 AATATAAAAATAAT
1 AATATATAAATAAT
78940532 GATGTAAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
17 4 0.14
18 21 0.72
19 4 0.14
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (18 bp):
AATATATAAATAATTAAT
Found at i:78940516 original size:3 final size:3
Alignment explanation
Indices: 78940490--78940591 Score: 61
Period size: 3 Copynumber: 33.7 Consensus size: 3
78940480 AAAATATATA
* *
78940490 AAT AATT AAT AAT ATAT AAT -AT AAT AAT AAT -AT AAA AAT AAT GAT
1 AAT AA-T AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* ** *
78940535 -GT AA- AAT AAT AAT AAT AATT TGT GAAA AAT AAT ATAT AAT AAAT AAT
1 AAT AAT AAT AAT AAT AAT AA-T AAT -AAT AAT AAT A-AT AAT -AAT AAT
78940582 AAT -AT AAT AA
1 AAT AAT AAT AA
78940592 AATCATATTA
Statistics
Matches: 77, Mismatches: 11, Indels: 22
0.70 0.10 0.20
Matches are distributed among these distances:
2 9 0.12
3 55 0.71
4 13 0.17
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:78940546 original size:30 final size:29
Alignment explanation
Indices: 78940463--78940551 Score: 90
Period size: 30 Copynumber: 2.9 Consensus size: 29
78940453 TAAAATAACG
*
78940463 AAAATATATATGTAAGAAAAATATATAA-ATA
1 AAAATA-ATATGTAA-AATAATA-ATAATATA
* * *
78940494 ATTAATAATATATAATATAATAATAATATA
1 A-AAATAATATGTAAAATAATAATAATATA
78940524 AAAATAATGATGTAAAATAATAATAATA
1 AAAATAAT-ATGTAAAATAATAATAATA
78940552 ATTTGTGAAA
Statistics
Matches: 48, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
29 10 0.21
30 26 0.54
31 8 0.17
32 4 0.08
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (29 bp):
AAAATAATATGTAAAATAATAATAATATA
Found at i:78940594 original size:30 final size:29
Alignment explanation
Indices: 78940482--78940605 Score: 84
Period size: 30 Copynumber: 4.3 Consensus size: 29
78940472 ATGTAAGAAA
* *
78940482 AATATATAAATAATTAATAATATATAATAT
1 AATATAT-AATAAATAATAATATATAAAAT
* *
78940512 AATA-ATAATATAAAAATAATGATGTAAAAT
1 AATATATAATA-AATAATAAT-ATATAAAAT
*
78940542 AATA-ATAAT-AAT--T--TGTGA-AAAAT
1 AATATATAATAAATAATAATAT-ATAAAAT
78940565 AATATATAATAAATAATAATATAATAAAAT
1 AATATATAATAAATAATAATAT-ATAAAAT
*
78940595 CATATTATAAT
1 AATA-TATAAT
78940606 GTATAATGTA
Statistics
Matches: 73, Mismatches: 10, Indels: 21
0.70 0.10 0.20
Matches are distributed among these distances:
23 10 0.14
24 6 0.08
25 3 0.04
26 1 0.01
27 1 0.01
28 6 0.08
29 12 0.16
30 28 0.38
31 6 0.08
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.35
Consensus pattern (29 bp):
AATATATAATAAATAATAATATATAAAAT
Found at i:78944646 original size:21 final size:20
Alignment explanation
Indices: 78944617--78944662 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
78944607 CGAAATGCAA
78944617 TCAACCTAACA-TGAATTAAGT
1 TCAACCTAA-ATTG-ATTAAGT
*
78944638 TCAAGCTAAATTGATTAAGT
1 TCAACCTAAATTGATTAAGT
78944658 T-AACC
1 TCAACC
78944663 ATTTCAGCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.14
20 9 0.41
21 10 0.45
ACGTcount: A:0.41, C:0.17, G:0.11, T:0.30
Consensus pattern (20 bp):
TCAACCTAAATTGATTAAGT
Found at i:78945682 original size:293 final size:293
Alignment explanation
Indices: 78945155--78945741 Score: 1138
Period size: 293 Copynumber: 2.0 Consensus size: 293
78945145 CCTCTTTGGA
78945155 AGCTTAAATAATCAGCTAATAAGCTGATTTGGGTCAACTCTTGGGATGGTTTTTGGACTGTCCAT
1 AGCTTAAATAATCAGCTAATAAGCTGATTTGGGTCAACTCTTGGGATGGTTTTTGGACTGTCCAT
* * *
78945220 TTCTTGGTCGGTTCGGTTCACTTGGTTCAGTTCAATTGGACCACTTTTTCATAATTAATTAATAA
66 TTCTTGGTCGGTTCGGTTCACTCGGTTCAATTCAACTGGACCACTTTTTCATAATTAATTAATAA
78945285 TAATTTATTAACCCAAATTAAATTGGATATAAATTAAAATTAATTATATTATGAATTAATACATA
131 TAATTTATTAACCCAAATTAAATTGGATATAAATTAAAATTAATTATATTATGAATTAATACATA
78945350 TAATTTTGGACCGTCTTAGGCTAAAATTTAGTTCGCCTCGATACTTCAAATTGCTTATTGGTTTT
196 TAATTTTGGACCGTCTTAGGCTAAAATTTAGTTCGCCTCGATACTTCAAATTGCTTATTGGTTTT
78945415 GTGCTTCTAGCAGTGTCTGCCGAGTCATTTTTC
261 GTGCTTCTAGCAGTGTCTGCCGAGTCATTTTTC
*
78945448 AGCTTAAATAATCAGCTAATAAGCTGATTTGGGTCAGCTCTTGGGATGGTTTTTGGACTGTCCAT
1 AGCTTAAATAATCAGCTAATAAGCTGATTTGGGTCAACTCTTGGGATGGTTTTTGGACTGTCCAT
78945513 TTCTTGGTCGGTTCGGTTCACTCGGTTCAATTCAACTGGACCACTTTTTCATAATTAATTAATAA
66 TTCTTGGTCGGTTCGGTTCACTCGGTTCAATTCAACTGGACCACTTTTTCATAATTAATTAATAA
78945578 TAATTTATTAACCCAAATTAAATTGGATATAAATTAAAATTAATTATATTATGAATTAATACATA
131 TAATTTATTAACCCAAATTAAATTGGATATAAATTAAAATTAATTATATTATGAATTAATACATA
78945643 TAATTTTGGACCGTCTTAGGCTAAAATTTAGTTCGCCTCGATACTTCAAATTGCTTATTGGTTTT
196 TAATTTTGGACCGTCTTAGGCTAAAATTTAGTTCGCCTCGATACTTCAAATTGCTTATTGGTTTT
78945708 GTGCTTCTAGCAGTGTCTGCCGAGTCATTTTTC
261 GTGCTTCTAGCAGTGTCTGCCGAGTCATTTTTC
78945741 A
1 A
78945742 CCATTTGTGC
Statistics
Matches: 290, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
293 290 1.00
ACGTcount: A:0.28, C:0.15, G:0.16, T:0.40
Consensus pattern (293 bp):
AGCTTAAATAATCAGCTAATAAGCTGATTTGGGTCAACTCTTGGGATGGTTTTTGGACTGTCCAT
TTCTTGGTCGGTTCGGTTCACTCGGTTCAATTCAACTGGACCACTTTTTCATAATTAATTAATAA
TAATTTATTAACCCAAATTAAATTGGATATAAATTAAAATTAATTATATTATGAATTAATACATA
TAATTTTGGACCGTCTTAGGCTAAAATTTAGTTCGCCTCGATACTTCAAATTGCTTATTGGTTTT
GTGCTTCTAGCAGTGTCTGCCGAGTCATTTTTC
Found at i:78945949 original size:18 final size:18
Alignment explanation
Indices: 78945926--78945961 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
78945916 AAAATGTGTA
78945926 AATTTTCATGTTTCCAAT
1 AATTTTCATGTTTCCAAT
78945944 AATTTTCATGTTTCCAAT
1 AATTTTCATGTTTCCAAT
78945962 CACTATCCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.17, G:0.06, T:0.50
Consensus pattern (18 bp):
AATTTTCATGTTTCCAAT
Found at i:78947081 original size:17 final size:17
Alignment explanation
Indices: 78947048--78947081 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
78947038 TTTGGTTATG
78947048 TGTTTTATATAATTTTT
1 TGTTTTATATAATTTTT
*
78947065 TGTTATTATGTAATTTT
1 TGTT-TTATATAATTTT
78947082 GCGAAAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.24, C:0.00, G:0.09, T:0.68
Consensus pattern (17 bp):
TGTTTTATATAATTTTT
Found at i:78947979 original size:17 final size:17
Alignment explanation
Indices: 78947929--78947984 Score: 57
Period size: 17 Copynumber: 3.5 Consensus size: 17
78947919 AATATTATTT
78947929 ATTAAATTAA--TT-TA
1 ATTAAATTAATTTTCTA
*
78947943 AATAAATTAATTTTCTA
1 ATTAAATTAATTTTCTA
78947960 ATTAAA-TAATTTTCTCA
1 ATTAAATTAATTTTCT-A
*
78947977 ATTCAATT
1 ATTAAATT
78947985 CTAATTTCAT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
14 9 0.26
16 11 0.32
17 13 0.38
18 1 0.03
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (17 bp):
ATTAAATTAATTTTCTA
Found at i:78953198 original size:28 final size:28
Alignment explanation
Indices: 78953166--78953220 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
78953156 GGTCTTTGAT
78953166 CATACTATAACACCACACTATGAACGTG
1 CATACTATAACACCACACTATGAACGTG
78953194 CATACTATAACACCACACTATGAACGT
1 CATACTATAACACCACACTATGAACGT
78953221 CACAAGTGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.40, C:0.29, G:0.09, T:0.22
Consensus pattern (28 bp):
CATACTATAACACCACACTATGAACGTG
Found at i:78953459 original size:34 final size:34
Alignment explanation
Indices: 78953416--78953483 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
78953406 TATTAGACTA
*
78953416 AGGATATGTTTTTGTTCGTCTACTAATATAAGTG
1 AGGATATGTTTTCGTTCGTCTACTAATATAAGTG
*
78953450 AGGATATGTTTTCGTTTGTCTACTAATATAAGTG
1 AGGATATGTTTTCGTTCGTCTACTAATATAAGTG
78953484 TCTTTCCATA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.26, C:0.09, G:0.21, T:0.44
Consensus pattern (34 bp):
AGGATATGTTTTCGTTCGTCTACTAATATAAGTG
Found at i:78962155 original size:9 final size:9
Alignment explanation
Indices: 78962141--78962209 Score: 66
Period size: 9 Copynumber: 7.7 Consensus size: 9
78962131 AATAAGTATA
78962141 AAATTAACC
1 AAATTAACC
*
78962150 AAATTAATC
1 AAATTAACC
* *
78962159 GAATTAATC
1 AAATTAACC
*
78962168 ACATTAACC
1 AAATTAACC
* *
78962177 GAATTACCC
1 AAATTAACC
78962186 AAATTAACC
1 AAATTAACC
*
78962195 GAATTAACC
1 AAATTAACC
*
78962204 GAATTA
1 AAATTA
78962210 TTTGTATAAA
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
9 49 1.00
ACGTcount: A:0.48, C:0.20, G:0.06, T:0.26
Consensus pattern (9 bp):
AAATTAACC
Found at i:78962165 original size:18 final size:18
Alignment explanation
Indices: 78962142--78962209 Score: 91
Period size: 18 Copynumber: 3.8 Consensus size: 18
78962132 ATAAGTATAA
*
78962142 AATTAACCAAATTAATCG
1 AATTAACCAAATTAACCG
* *
78962160 AATTAATCACATTAACCG
1 AATTAACCAAATTAACCG
*
78962178 AATTACCCAAATTAACCG
1 AATTAACCAAATTAACCG
*
78962196 AATTAACCGAATTA
1 AATTAACCAAATTA
78962210 TTTGTATAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 42 1.00
ACGTcount: A:0.47, C:0.21, G:0.06, T:0.26
Consensus pattern (18 bp):
AATTAACCAAATTAACCG
Found at i:78962240 original size:6 final size:6
Alignment explanation
Indices: 78962229--78962255 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
78962219 AATTATGTGT
78962229 TTTTTA TTTTTA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTT
78962256 ATTAAATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:78962296 original size:13 final size:13
Alignment explanation
Indices: 78962280--78962304 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
78962270 AATTTTTATG
78962280 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
78962293 ATTGGGTTGGGT
1 ATTGGGTTGGGT
78962305 TGGGTACTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.48, T:0.40
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:78962304 original size:18 final size:18
Alignment explanation
Indices: 78962281--78962318 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
78962271 ATTTTTATGA
78962281 TTGGGTTGGGTAATTGGG
1 TTGGGTTGGGTAATTGGG
*
78962299 TTGGGTTGGGTACTTGGG
1 TTGGGTTGGGTAATTGGG
78962317 TT
1 TT
78962319 AATATATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.08, C:0.03, G:0.47, T:0.42
Consensus pattern (18 bp):
TTGGGTTGGGTAATTGGG
Found at i:78966698 original size:16 final size:15
Alignment explanation
Indices: 78966672--78966702 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
78966662 AAATGGGGAA
78966672 TAAATTAAAATTAAT
1 TAAATTAAAATTAAT
78966687 TAAATTATAAATTAAT
1 TAAATTA-AAATTAAT
78966703 AACCATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
TAAATTAAAATTAAT
Found at i:78967317 original size:13 final size:14
Alignment explanation
Indices: 78967290--78967318 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
78967280 TTTATTCAAG
78967290 ATTAAGCTGTAATC
1 ATTAAGCTGTAATC
78967304 ATTAAGCT-TAATC
1 ATTAAGCTGTAATC
78967317 AT
1 AT
78967319 GTCTTCATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (14 bp):
ATTAAGCTGTAATC
Found at i:78978688 original size:21 final size:21
Alignment explanation
Indices: 78978664--78978737 Score: 94
Period size: 21 Copynumber: 3.5 Consensus size: 21
78978654 TTTGCTGCCA
*
78978664 TCGCTGCTGCCTTTGCCTCCC
1 TCGCTGCTGCCGTTGCCTCCC
* * *
78978685 TCGCTACTACCGCTGCCTCCC
1 TCGCTGCTGCCGTTGCCTCCC
*
78978706 TCACTGCTGCCGTTGCCTCCC
1 TCGCTGCTGCCGTTGCCTCCC
*
78978727 TCTCTGCTGCC
1 TCGCTGCTGCC
78978738 TCCGCTCTAA
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 44 1.00
ACGTcount: A:0.04, C:0.49, G:0.18, T:0.30
Consensus pattern (21 bp):
TCGCTGCTGCCGTTGCCTCCC
Found at i:78981453 original size:27 final size:27
Alignment explanation
Indices: 78981423--78981478 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
78981413 TTAAAAACTC
* *
78981423 ATTTTTTAAAAATCAAAACAAATACAA
1 ATTTTTGAAAAATCAAAACAAAAACAA
* *
78981450 ATTTTTGATACATCAAAACAAAAACAA
1 ATTTTTGAAAAATCAAAACAAAAACAA
78981477 AT
1 AT
78981479 GAATGCTGTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.57, C:0.12, G:0.02, T:0.29
Consensus pattern (27 bp):
ATTTTTGAAAAATCAAAACAAAAACAA
Found at i:78983119 original size:28 final size:30
Alignment explanation
Indices: 78983054--78983126 Score: 100
Period size: 28 Copynumber: 2.5 Consensus size: 30
78983044 TTAATCAAAA
78983054 CCCTAAACCTTAAAC-CATTAAACTATATC
1 CCCTAAACCTTAAACTCATTAAACTATATC
78983083 CCC-ATAACCTTAAACTC-TT-AACTATATC
1 CCCTA-AACCTTAAACTCATTAAACTATATC
*
78983111 CCCTAAACCCTAAACT
1 CCCTAAACCTTAAACT
78983127 ATATCCTCTA
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
28 23 0.57
29 16 0.40
30 1 0.03
ACGTcount: A:0.38, C:0.34, G:0.00, T:0.27
Consensus pattern (30 bp):
CCCTAAACCTTAAACTCATTAAACTATATC
Found at i:78983145 original size:20 final size:21
Alignment explanation
Indices: 78983093--78983137 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
78983083 CCCATAACCT
* *
78983093 TAAACTCTTAACTATATCCCC
1 TAAACCCTAAACTATATCCCC
*
78983114 TAAACCCTAAACTATATCCTC
1 TAAACCCTAAACTATATCCCC
78983135 TAA
1 TAA
78983138 CCACAAACCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.31, G:0.00, T:0.31
Consensus pattern (21 bp):
TAAACCCTAAACTATATCCCC
Found at i:78983318 original size:14 final size:14
Alignment explanation
Indices: 78983275--78983320 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
78983265 CTTAAACCAT
78983275 TAAACTATATCCCC
1 TAAACTATATCCCC
* *
78983289 T--ACTAAAGTACCC
1 TAAACTATA-TCCCC
78983302 TAAACTATATCCCC
1 TAAACTATATCCCC
78983316 TAAAC
1 TAAAC
78983321 CCTAAACCAC
Statistics
Matches: 25, Mismatches: 4, Indels: 6
0.71 0.11 0.17
Matches are distributed among these distances:
12 5 0.20
13 5 0.20
14 10 0.40
15 5 0.20
ACGTcount: A:0.39, C:0.33, G:0.02, T:0.26
Consensus pattern (14 bp):
TAAACTATATCCCC
Found at i:78983369 original size:22 final size:22
Alignment explanation
Indices: 78983339--78983419 Score: 74
Period size: 22 Copynumber: 3.7 Consensus size: 22
78983329 ACAAAATAAT
* *
78983339 AACCCTTAAGCCTTAACCCCTA
1 AACCATTAACCCTTAACCCCTA
* *
78983361 AACCATTAACCCATAACCCATA
1 AACCATTAACCCTTAACCCCTA
* * * *
78983383 ACCCATAAACCCCTAACCACTA
1 AACCATTAACCCTTAACCCCTA
*
78983405 ACCCA-TAACCCTTAA
1 AACCATTAACCCTTAA
78983420 ACCATAAGCC
Statistics
Matches: 48, Mismatches: 11, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
21 8 0.17
22 40 0.83
ACGTcount: A:0.40, C:0.41, G:0.01, T:0.19
Consensus pattern (22 bp):
AACCATTAACCCTTAACCCCTA
Found at i:78983372 original size:29 final size:28
Alignment explanation
Indices: 78983338--78983424 Score: 93
Period size: 29 Copynumber: 3.0 Consensus size: 28
78983328 CACAAAATAA
* * *
78983338 TAACCCTTAAGCCTTAACCCCTAAACCAT
1 TAACCC-TAACCCATAACCCATAAACCAT
**
78983367 TAACCCATAACCCATAACCCATAAACCCC
1 TAACCC-TAACCCATAACCCATAAACCAT
*
78983396 TAACCACTAACCCATAACCCTTAAACCAT
1 TAACC-CTAACCCATAACCCATAAACCAT
78983425 AAGCCATAAA
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
29 47 0.98
30 1 0.02
ACGTcount: A:0.39, C:0.40, G:0.01, T:0.20
Consensus pattern (28 bp):
TAACCCTAACCCATAACCCATAAACCAT
Found at i:78983377 original size:7 final size:7
Alignment explanation
Indices: 78983337--78983461 Score: 85
Period size: 7 Copynumber: 17.6 Consensus size: 7
78983327 CCACAAAATA
78983337 ATAACCC
1 ATAACCC
* *
78983344 TTAAGCC
1 ATAACCC
*
78983351 TTAACCC
1 ATAACCC
* *
78983358 CTAAACC
1 ATAACCC
78983365 ATTAACCC
1 A-TAACCC
78983373 ATAACCC
1 ATAACCC
78983380 ATAACCC
1 ATAACCC
78983387 ATAAACCC
1 AT-AACCC
*
78983395 CTAA-CC
1 ATAACCC
78983401 ACTAACCC
1 A-TAACCC
78983409 ATAACCC
1 ATAACCC
* *
78983416 TTAAACC
1 ATAACCC
*
78983423 ATAAGCC
1 ATAACCC
*
78983430 ATAA-AC
1 ATAACCC
78983436 ATAATCCC
1 ATAA-CCC
78983444 -TAAACCC
1 AT-AACCC
*
78983451 ATAATCC
1 ATAACCC
78983458 ATAA
1 ATAA
78983462 ACATTTAAAT
Statistics
Matches: 94, Mismatches: 16, Indels: 16
0.75 0.13 0.13
Matches are distributed among these distances:
6 7 0.07
7 68 0.72
8 19 0.20
ACGTcount: A:0.42, C:0.37, G:0.02, T:0.19
Consensus pattern (7 bp):
ATAACCC
Found at i:78983462 original size:15 final size:15
Alignment explanation
Indices: 78983352--78983463 Score: 96
Period size: 14 Copynumber: 7.8 Consensus size: 15
78983342 CCTTAAGCCT
*
78983352 TAACCCCTAAA-CCA
1 TAACCCATAAACCCA
78983366 TTAACCCAT-AACCCA
1 -TAACCCATAAACCCA
*
78983381 TAACCCATAAACCCC
1 TAACCCATAAACCCA
78983396 TAA-CCACT-AACCCA
1 TAACCCA-TAAACCCA
*
78983410 TAACCCTTAAA-CCA
1 TAACCCATAAACCCA
*
78983424 TAAGCCATAAA--CA
1 TAACCCATAAACCCA
78983437 TAATCCC-TAAACCCA
1 TAA-CCCATAAACCCA
*
78983452 TAATCCATAAAC
1 TAACCCATAAAC
78983464 ATTTAAATAT
Statistics
Matches: 80, Mismatches: 8, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
13 9 0.11
14 38 0.47
15 33 0.41
ACGTcount: A:0.44, C:0.38, G:0.01, T:0.18
Consensus pattern (15 bp):
TAACCCATAAACCCA
Found at i:78983465 original size:28 final size:28
Alignment explanation
Indices: 78983359--78983463 Score: 50
Period size: 29 Copynumber: 3.7 Consensus size: 28
78983349 CCTTAACCCC
* * *
78983359 TAAACCATTAACCCATAACCCATAACCCA
1 TAAACCA-TAACCCCTAAACCATAAGCCA
* * * * *
78983388 TAAACCCCTAACCACTAACCCATAACCCT
1 TAAA-CCATAACCCCTAAACCATAAGCCA
* * * *
78983417 TAAACCATAAGCCATAAA-CATAATCCC
1 TAAACCATAACCCCTAAACCATAAGCCA
* *
78983444 TAAACCCATAATCCATAAAC
1 TAAA-CCATAACCCCTAAAC
78983464 ATTTAAATAT
Statistics
Matches: 61, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
27 11 0.18
28 22 0.36
29 26 0.43
30 2 0.03
ACGTcount: A:0.45, C:0.36, G:0.01, T:0.18
Consensus pattern (28 bp):
TAAACCATAACCCCTAAACCATAAGCCA
Found at i:78986613 original size:23 final size:23
Alignment explanation
Indices: 78986584--78986632 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
78986574 ATACCATATT
78986584 TTTAATGTATTAAAATAATGAAA
1 TTTAATGTATTAAAATAATGAAA
78986607 TTTAATGTATTAAAATAATGAAA
1 TTTAATGTATTAAAATAATGAAA
78986630 TTT
1 TTT
78986633 TGGATACGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.49, C:0.00, G:0.08, T:0.43
Consensus pattern (23 bp):
TTTAATGTATTAAAATAATGAAA
Found at i:78988131 original size:14 final size:14
Alignment explanation
Indices: 78988112--78988140 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
78988102 TTTTTTTCTC
78988112 ATGTTGTGAGTGTA
1 ATGTTGTGAGTGTA
78988126 ATGTTGTGAGTGTA
1 ATGTTGTGAGTGTA
78988140 A
1 A
78988141 GAAGATGTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.24, C:0.00, G:0.34, T:0.41
Consensus pattern (14 bp):
ATGTTGTGAGTGTA
Found at i:78991879 original size:33 final size:33
Alignment explanation
Indices: 78991839--78991904 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
78991829 CCTGAGAGAT
*
78991839 AGAATCAAAGATATGCTCAGTGGAAGACTCAAG
1 AGAATCAAAGATATCCTCAGTGGAAGACTCAAG
78991872 AGAATCAAAGATATCCTCAGTGGAAGACTCAAG
1 AGAATCAAAGATATCCTCAGTGGAAGACTCAAG
78991905 GGATATATCA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.42, C:0.17, G:0.23, T:0.18
Consensus pattern (33 bp):
AGAATCAAAGATATCCTCAGTGGAAGACTCAAG
Found at i:78999061 original size:234 final size:234
Alignment explanation
Indices: 78998652--78999119 Score: 909
Period size: 234 Copynumber: 2.0 Consensus size: 234
78998642 TTCCGCCTTT
78998652 ACTTGCTGACATATTAAACACTTCGAAACAAAATCGAAAATGTCTCGTTTCATACCATGCCACCA
1 ACTTGCTGACATATTAAACACTTCGAAACAAAATCGAAAATGTCTCGTTTCATACCATGCCACCA
* *
78998717 AAACTGGCGTCTCAGGTCGTTGTACATTTTCGTACTCCCCGGGTGAATTGACATTCGGCTACAAT
66 AAACTGGCGTCTCAGATCGTTGTACATTTTCGTACTCCCCGGGTGAATTGACATTCGACTACAAT
78998782 GGGCTTCGTTCAGAATCATCGAAATGAGTTCTGAATTTCTTGGAACACACAACCGACTTCTGAAC
131 GGGCTTCGTTCAGAATCATCGAAATGAGTTCTGAATTTCTTGGAACACACAACCGACTTCTGAAC
78998847 CTCAAACAATCGTCATCATCAATTGAAATTCGAATTCCG
196 CTCAAACAATCGTCATCATCAATTGAAATTCGAATTCCG
78998886 ACTTGCTGACATATTAAACACTTCGAAACAAAATCGAAAATGTCTCGTTTCATACCATGCCACCA
1 ACTTGCTGACATATTAAACACTTCGAAACAAAATCGAAAATGTCTCGTTTCATACCATGCCACCA
*
78998951 AAACTGGCGTCTCAGATCGTTGTACATTTTCGTACTCCCCGGGTGAATTGACATTCGACTATAAT
66 AAACTGGCGTCTCAGATCGTTGTACATTTTCGTACTCCCCGGGTGAATTGACATTCGACTACAAT
78999016 GGGCTTCGTTCAGAATCATCGAAATGAGTTCTGAATTTCTTGGAACACACAACCGACTTCTGAAC
131 GGGCTTCGTTCAGAATCATCGAAATGAGTTCTGAATTTCTTGGAACACACAACCGACTTCTGAAC
78999081 CTCAAACAATCGTCATCATCAATTGAAATTCGAATTCCG
196 CTCAAACAATCGTCATCATCAATTGAAATTCGAATTCCG
78999120 TATTCGGAAT
Statistics
Matches: 231, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
234 231 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (234 bp):
ACTTGCTGACATATTAAACACTTCGAAACAAAATCGAAAATGTCTCGTTTCATACCATGCCACCA
AAACTGGCGTCTCAGATCGTTGTACATTTTCGTACTCCCCGGGTGAATTGACATTCGACTACAAT
GGGCTTCGTTCAGAATCATCGAAATGAGTTCTGAATTTCTTGGAACACACAACCGACTTCTGAAC
CTCAAACAATCGTCATCATCAATTGAAATTCGAATTCCG
Found at i:79010184 original size:261 final size:261
Alignment explanation
Indices: 79009720--79010238 Score: 1020
Period size: 261 Copynumber: 2.0 Consensus size: 261
79009710 AAACAGGAAT
* *
79009720 CTCGAATTACTAGGGGGCATTTCTTACACACTTTGTCGACAAGCACGTAACGACCCAAGGGATTT
1 CTCGAATTACTAGGGGACATCTCTTACACACTTTGTCGACAAGCACGTAACGACCCAAGGGATTT
79009785 GACACCCGAATTACGAACTCAGTAGACTCAACAGGTAGAGTCTTACTGGATGCTAAGGTTTCACA
66 GACACCCGAATTACGAACTCAGTAGACTCAACAGGTAGAGTCTTACTGGATGCTAAGGTTTCACA
79009850 TACATATGAATGAGTAGAGCCAGGGTCAATCAATGCAATCACATTAGTATCAAAGAGAGTGAAGG
131 TACATATGAATGAGTAGAGCCAGGGTCAATCAATGCAATCACATTAGTATCAAAGAGAGTGAAGG
79009915 TACCAGTGATGACGTCAGGGGAGGATGCCTCCTCTCGTGCGCGAATGGCATATGCTCTAGCAGAA
196 TACCAGTGATGACGTCAGGGGAGGATGCCTCCTCTCGTGCGCGAATGGCATATGCTCTAGCAGAA
79009980 C
261 C
79009981 CTCGAATTACTAGGGGACATCTCTTACACACTTTGTCGACAAGCACGTAACGACCCAAGGGATTT
1 CTCGAATTACTAGGGGACATCTCTTACACACTTTGTCGACAAGCACGTAACGACCCAAGGGATTT
79010046 GACACCCGAATTACGAACTCAGTAGACTCAACAGGTAGAGTCTTACTGGATGCTAAGGTTTCACA
66 GACACCCGAATTACGAACTCAGTAGACTCAACAGGTAGAGTCTTACTGGATGCTAAGGTTTCACA
79010111 TACATATGAATGAGTAGAGCCAGGGTCAATCAATGCAATCACATTAGTATCAAAGAGAGTGAAGG
131 TACATATGAATGAGTAGAGCCAGGGTCAATCAATGCAATCACATTAGTATCAAAGAGAGTGAAGG
79010176 TACCAGTGATGACGTCAGGGGAGGATGCCTCCTCTCGTGCGCGAATGGCATATGCTCTAGCAG
196 TACCAGTGATGACGTCAGGGGAGGATGCCTCCTCTCGTGCGCGAATGGCATATGCTCTAGCAG
79010239 GAGTACGGTT
Statistics
Matches: 256, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
261 256 1.00
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.23
Consensus pattern (261 bp):
CTCGAATTACTAGGGGACATCTCTTACACACTTTGTCGACAAGCACGTAACGACCCAAGGGATTT
GACACCCGAATTACGAACTCAGTAGACTCAACAGGTAGAGTCTTACTGGATGCTAAGGTTTCACA
TACATATGAATGAGTAGAGCCAGGGTCAATCAATGCAATCACATTAGTATCAAAGAGAGTGAAGG
TACCAGTGATGACGTCAGGGGAGGATGCCTCCTCTCGTGCGCGAATGGCATATGCTCTAGCAGAA
C
Found at i:79016660 original size:13 final size:13
Alignment explanation
Indices: 79016642--79016667 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
79016632 ATGTGCATTC
79016642 TTAGTTTAGTTAA
1 TTAGTTTAGTTAA
79016655 TTAGTTTAGTTAA
1 TTAGTTTAGTTAA
79016668 AACAAATCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
TTAGTTTAGTTAA
Found at i:79016985 original size:30 final size:30
Alignment explanation
Indices: 79016940--79016997 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
79016930 CACGGCCATG
79016940 ACACAAGGGCATGTGG-TCTACCCGTGTGTC
1 ACACAAGGGCATGTGGATC-ACCCGTGTGTC
* *
79016970 ACACACGGGCGTGTGGATCACCCGTGTG
1 ACACAAGGGCATGTGGATCACCCGTGTG
79016998 GAAGTGCCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.92
31 2 0.08
ACGTcount: A:0.19, C:0.28, G:0.33, T:0.21
Consensus pattern (30 bp):
ACACAAGGGCATGTGGATCACCCGTGTGTC
Found at i:79020022 original size:18 final size:18
Alignment explanation
Indices: 79019999--79020034 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
79019989 TTTGAAATGC
*
79019999 TTTCTTAGAATGGAAGTT
1 TTTCTTAGAATGAAAGTT
*
79020017 TTTCTTGGAATGAAAGTT
1 TTTCTTAGAATGAAAGTT
79020035 GCTCGATCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.28, C:0.06, G:0.22, T:0.44
Consensus pattern (18 bp):
TTTCTTAGAATGAAAGTT
Found at i:79020854 original size:10 final size:10
Alignment explanation
Indices: 79020839--79020888 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
79020829 TAATTTTAAG
79020839 ATTTAT-TTT
1 ATTTATCTTT
79020848 CATTTATCTTT
1 -ATTTATCTTT
*
79020859 AATTATCTTT
1 ATTTATCTTT
79020869 ATTTAT-TTGT
1 ATTTATCTT-T
79020879 ATTTATCTTT
1 ATTTATCTTT
79020889 TAGAATTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:79022428 original size:18 final size:18
Alignment explanation
Indices: 79022402--79022453 Score: 65
Period size: 18 Copynumber: 2.9 Consensus size: 18
79022392 TAGCTTAACC
79022402 TAAATTAATAAAATAAAAA
1 TAAA-TAATAAAATAAAAA
79022421 TAAATAATAAAAT-AAAA
1 TAAATAATAAAATAAAAA
79022438 T-AA-AATAAAAATAAAA
1 TAAATAAT-AAAATAAAA
79022454 CAAAATAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
15 3 0.10
16 7 0.23
17 8 0.26
18 9 0.29
19 4 0.13
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (18 bp):
TAAATAATAAAATAAAAA
Found at i:79022465 original size:6 final size:5
Alignment explanation
Indices: 79022408--79022463 Score: 67
Period size: 5 Copynumber: 10.4 Consensus size: 5
79022398 AACCTAAATT
*
79022408 AATAA AATAAA AATAAA TAATAA AATAA AATAA AATAAA AATAA AACAA
1 AATAA AAT-AA AAT-AA -AATAA AATAA AATAA AAT-AA AATAA AATAA
79022457 AATAA AA
1 AATAA AA
79022464 ATCTTTCTAT
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
5 28 0.61
6 15 0.33
7 3 0.07
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.18
Consensus pattern (5 bp):
AATAA
Found at i:79028453 original size:5 final size:5
Alignment explanation
Indices: 79028421--79028475 Score: 55
Period size: 5 Copynumber: 11.8 Consensus size: 5
79028411 TATTTTTTAA
* * *
79028421 ATTTT A-TTA ATTTT A-TTA ATTTT A-TTT ATTTT ATTTT ACTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT
79028468 A-TTT ATTT
1 ATTTT ATTT
79028476 ATTAATTTAT
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
4 14 0.35
5 26 0.65
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (5 bp):
ATTTT
Found at i:79028456 original size:9 final size:9
Alignment explanation
Indices: 79028421--79028488 Score: 68
Period size: 9 Copynumber: 7.6 Consensus size: 9
79028411 TATTTTTTAA
*
79028421 ATTTTATTA
1 ATTTTATTT
*
79028430 ATTTTATTA
1 ATTTTATTT
79028439 ATTTTATTT
1 ATTTTATTT
79028448 ATTTTATTTT
1 ATTTTA-TTT
*
79028458 ACTTTATTT
1 ATTTTATTT
79028467 -TATTTATTT
1 AT-TTTATTT
*
79028476 A-TTAATTT
1 ATTTTATTT
79028484 ATTTT
1 ATTTT
79028489 TGGATAAAAT
Statistics
Matches: 50, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
8 7 0.14
9 35 0.70
10 8 0.16
ACGTcount: A:0.26, C:0.01, G:0.00, T:0.72
Consensus pattern (9 bp):
ATTTTATTT
Found at i:79028465 original size:15 final size:14
Alignment explanation
Indices: 79028439--79028478 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
79028429 AATTTTATTA
79028439 ATTTTATTTATTTT
1 ATTTTATTTATTTT
79028453 ATTTTACTTTATTTT
1 ATTTTA-TTTATTTT
79028468 A-TTTATTTATT
1 ATTTTATTTATT
79028479 AATTTATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 6 0.24
14 10 0.40
15 9 0.36
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.75
Consensus pattern (14 bp):
ATTTTATTTATTTT
Found at i:79028470 original size:24 final size:23
Alignment explanation
Indices: 79028430--79028475 Score: 74
Period size: 24 Copynumber: 2.0 Consensus size: 23
79028420 AATTTTATTA
79028430 ATTTTATTAATTTTATTTATTTT
1 ATTTTATTAATTTTATTTATTTT
*
79028453 ATTTTACTTTATTTTATTTATTT
1 ATTTTA-TTAATTTTATTTATTT
79028476 ATTAATTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 6 0.29
24 15 0.71
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (23 bp):
ATTTTATTAATTTTATTTATTTT
Found at i:79029020 original size:12 final size:12
Alignment explanation
Indices: 79029003--79029033 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
79028993 CCCCGCACAA
*
79029003 CTCCTCTTCCTC
1 CTCCTCTTCATC
79029015 CTCCTCTTCATC
1 CTCCTCTTCATC
79029027 CTCCTCT
1 CTCCTCT
79029034 CAGCCGCTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.03, C:0.55, G:0.00, T:0.42
Consensus pattern (12 bp):
CTCCTCTTCATC
Found at i:79031234 original size:96 final size:97
Alignment explanation
Indices: 79031082--79031260 Score: 290
Period size: 96 Copynumber: 1.9 Consensus size: 97
79031072 AAGGATGTGC
** * *
79031082 TGGGCTGAGTAACCAGGGTGAGGTGCTTGGCTGTCATCTCTCTTTGCGTCAAAAGGTTCGATATG
1 TGGGCTGAGTAACCAGGGTGAGGTGCTTGGCTGTCATCTCTCTTCACGTCAAAAGGTTCAATATA
79031147 TTCTTAAG-AAAAATAAAAATTAAGAGTATGT
66 TTCTTAAGCAAAAATAAAAATTAAGAGTATGT
*
79031178 TGGGCTGAGTAACCGGGGTG-GGATGCTTGGCTGTCATCTCTCTTCACGTCAAAAGGTTCAATAT
1 TGGGCTGAGTAACCAGGGTGAGG-TGCTTGGCTGTCATCTCTCTTCACGTCAAAAGGTTCAATAT
79031242 ATTCTTAAGCAAAAATAAA
65 ATTCTTAAGCAAAAATAAA
79031261 TAAATAAAGA
Statistics
Matches: 76, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
95 2 0.03
96 65 0.86
97 9 0.12
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (97 bp):
TGGGCTGAGTAACCAGGGTGAGGTGCTTGGCTGTCATCTCTCTTCACGTCAAAAGGTTCAATATA
TTCTTAAGCAAAAATAAAAATTAAGAGTATGT
Found at i:79031904 original size:10 final size:10
Alignment explanation
Indices: 79031889--79031944 Score: 53
Period size: 10 Copynumber: 5.6 Consensus size: 10
79031879 TAATTTTAAA
79031889 ATTTAT-TTT
1 ATTTATCTTT
*
79031898 CATTTATATTT
1 -ATTTATCTTT
*
79031909 AATTATCTTT
1 ATTTATCTTT
*
79031919 AATTATCTTT
1 ATTTATCTTT
79031929 ATTTAT-TTGT
1 ATTTATCTT-T
79031939 ATTTAT
1 ATTTAT
79031945 TTTTTAGAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
9 2 0.05
10 36 0.88
11 3 0.07
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.66
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:79032098 original size:14 final size:14
Alignment explanation
Indices: 79032079--79032107 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
79032069 AAAATTCCAT
79032079 TCCCATTATATTTA
1 TCCCATTATATTTA
79032093 TCCCATTATATTTA
1 TCCCATTATATTTA
79032107 T
1 T
79032108 TTGTTTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.21, G:0.00, T:0.52
Consensus pattern (14 bp):
TCCCATTATATTTA
Found at i:79033525 original size:41 final size:42
Alignment explanation
Indices: 79033480--79033570 Score: 114
Period size: 41 Copynumber: 2.2 Consensus size: 42
79033470 ATTCTAGGAA
** *
79033480 TATTTTATTTTAT-TTTGAATAGTTTATTAAAATAAAGAAAT
1 TATTTTACCTTATCTTTGAATAGTTTATTAAAATAAAAAAAT
* * *
79033521 TATTTT-CCTTATCTTTTAGTAGTTTATTAGAATAAAAAAAT
1 TATTTTACCTTATCTTTGAATAGTTTATTAAAATAAAAAAAT
79033562 TATTTTACC
1 TATTTTACC
79033571 AATTAAGTTA
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
40 4 0.10
41 36 0.86
42 2 0.05
ACGTcount: A:0.37, C:0.05, G:0.07, T:0.51
Consensus pattern (42 bp):
TATTTTACCTTATCTTTGAATAGTTTATTAAAATAAAAAAAT
Found at i:79035079 original size:21 final size:22
Alignment explanation
Indices: 79035055--79035095 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
79035045 ATGGTATATA
79035055 AAAATGTACA-AGTA-ATATAAT
1 AAAAT-TACATAGTATATATAAT
79035076 AAAATTACATAGTATATATA
1 AAAATTACATAGTATATATA
79035096 TACGTTAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 9 0.50
22 5 0.28
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.32
Consensus pattern (22 bp):
AAAATTACATAGTATATATAAT
Found at i:79035672 original size:21 final size:22
Alignment explanation
Indices: 79035648--79035700 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 22
79035638 TATACAAAAC
*
79035648 AAAATATACGCATAATATA-TT
1 AAAATATACGCATAATATACAT
* *
79035669 AAAATATACACATAATGTACAT
1 AAAATATACGCATAATATACAT
79035691 AAAATATACG
1 AAAATATACG
79035701 TATATACATC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
21 17 0.63
22 10 0.37
ACGTcount: A:0.55, C:0.11, G:0.06, T:0.28
Consensus pattern (22 bp):
AAAATATACGCATAATATACAT
Found at i:79042722 original size:43 final size:44
Alignment explanation
Indices: 79042653--79042745 Score: 145
Period size: 43 Copynumber: 2.2 Consensus size: 44
79042643 TCCTAATTGG
79042653 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAA-A
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
* * *
79042696 GAAAATAGTTCCCTTATTTTAGTAAACTACTAAAAGATAAAATA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
79042740 -AAAATA
1 GAAAATA
79042746 TTTCTAGAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
43 45 0.98
44 1 0.02
ACGTcount: A:0.52, C:0.13, G:0.06, T:0.29
Consensus pattern (44 bp):
GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
Found at i:79042789 original size:19 final size:18
Alignment explanation
Indices: 79042767--79042806 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
79042757 TGAATAAAAC
79042767 TTATCTATCC-AAATAAGAT
1 TTATCTA-CCTAAATAA-AT
79042786 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
79042804 TTA
1 TTA
79042807 AAATATATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:79047462 original size:43 final size:43
Alignment explanation
Indices: 79047394--79047477 Score: 141
Period size: 43 Copynumber: 2.0 Consensus size: 43
79047384 CCTAATTGGA
79047394 AAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAAAG
1 AAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAAAG
* * *
79047437 AAAATAGTTCCCTTATTTTAGTAAACTACTAAAAGATAAAA
1 AAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAA
79047478 TAAAATTATT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.50, C:0.14, G:0.06, T:0.30
Consensus pattern (43 bp):
AAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAAAG
Found at i:79047529 original size:19 final size:18
Alignment explanation
Indices: 79047507--79047546 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
79047497 TGAATAAAAC
79047507 TTATCTATCC-AAATAAGAT
1 TTATCTA-CCTAAATAA-AT
79047526 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
79047544 TTA
1 TTA
79047547 AAATATATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:79054650 original size:44 final size:44
Alignment explanation
Indices: 79054587--79054675 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
79054577 AAAAAAAAAC
79054587 TTTCAACGATGCCAAAAGAAGTAAAACCCAATTCAAGGGTTCCT
1 TTTCAACGATGCCAAAAGAAGTAAAACCCAATTCAAGGGTTCCT
79054631 TTTCAACGATGCCAAAAGAAGTAAAACCCAATTCAAGGGTTCCT
1 TTTCAACGATGCCAAAAGAAGTAAAACCCAATTCAAGGGTTCCT
79054675 T
1 T
79054676 CAGAAATATA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.24
Consensus pattern (44 bp):
TTTCAACGATGCCAAAAGAAGTAAAACCCAATTCAAGGGTTCCT
Found at i:79056415 original size:30 final size:30
Alignment explanation
Indices: 79056381--79056437 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
79056371 TAAAAATATA
*
79056381 ATTTTTAAAAAATTAAATTAAAATTTTATT
1 ATTTTTAAAAAATTAAAGTAAAATTTTATT
* *
79056411 ATTTTTATAAAATTAAAGTATAATTTT
1 ATTTTTAAAAAATTAAAGTAAAATTTT
79056438 TTAAATTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (30 bp):
ATTTTTAAAAAATTAAAGTAAAATTTTATT
Found at i:79078641 original size:33 final size:33
Alignment explanation
Indices: 79078599--79078668 Score: 122
Period size: 33 Copynumber: 2.1 Consensus size: 33
79078589 AATTAAAACA
*
79078599 ATTTTCATAATCATTAACACAATACTAATTTAC
1 ATTTTCATAATCATTAACACAATACTAATTGAC
*
79078632 ATTTTCATAATCATTAATACAATACTAATTGAC
1 ATTTTCATAATCATTAACACAATACTAATTGAC
79078665 ATTT
1 ATTT
79078669 AACATTTAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.41, C:0.16, G:0.01, T:0.41
Consensus pattern (33 bp):
ATTTTCATAATCATTAACACAATACTAATTGAC
Found at i:79078712 original size:12 final size:11
Alignment explanation
Indices: 79078672--79078722 Score: 57
Period size: 12 Copynumber: 4.4 Consensus size: 11
79078662 GACATTTAAC
79078672 ATTTAAATTTCTT
1 ATTT-AATTTC-T
*
79078685 ATTCAATTTCT
1 ATTTAATTTCT
79078696 ATTTAATTTCT
1 ATTTAATTTCT
*
79078707 ACTTTAATTTCA
1 A-TTTAATTTCT
79078719 ATTT
1 ATTT
79078723 TAATCTTAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
11 15 0.44
12 16 0.47
13 3 0.09
ACGTcount: A:0.29, C:0.12, G:0.00, T:0.59
Consensus pattern (11 bp):
ATTTAATTTCT
Found at i:79078715 original size:23 final size:24
Alignment explanation
Indices: 79078672--79078722 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
79078662 GACATTTAAC
*
79078672 ATTTAAATTTCTTATTCAATTTCT
1 ATTTAAATTTCTTATTCAATTTCA
*
79078696 ATTT-AATTTC-TACTTTAATTTCA
1 ATTTAAATTTCTTA-TTCAATTTCA
79078719 ATTT
1 ATTT
79078723 TAATCTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 2 0.08
23 18 0.75
24 4 0.17
ACGTcount: A:0.29, C:0.12, G:0.00, T:0.59
Consensus pattern (24 bp):
ATTTAAATTTCTTATTCAATTTCA
Found at i:79079131 original size:20 final size:19
Alignment explanation
Indices: 79079102--79079147 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 19
79079092 AAATCCCTAG
79079102 TTTTTCCTTTTTCTTTTCT
1 TTTTTCCTTTTTCTTTTCT
*
79079121 TTTTCTCCTTTTTTTTTTCT
1 TTTT-TCCTTTTTCTTTTCT
79079141 TTCTTTC
1 TT-TTTC
79079148 TCGTTTGTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 4 0.17
20 18 0.75
21 2 0.08
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (19 bp):
TTTTTCCTTTTTCTTTTCT
Found at i:79079161 original size:24 final size:20
Alignment explanation
Indices: 79079102--79079142 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
79079092 AAATCCCTAG
*
79079102 TTTT-TCCTTTTTCTTTTCT
1 TTTTCTCCTTTTTTTTTTCT
79079121 TTTTCTCCTTTTTTTTTTCT
1 TTTTCTCCTTTTTTTTTTCT
79079141 TT
1 TT
79079143 CTTTCTCGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (20 bp):
TTTTCTCCTTTTTTTTTTCT
Found at i:79083645 original size:25 final size:25
Alignment explanation
Indices: 79083616--79083663 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
79083606 GCACTCTCTC
* *
79083616 GAGCCATATAGCAGGATGCTTATGT
1 GAGCCATATAACAGGAAGCTTATGT
*
79083641 GAGCCATGTAACAGGAAGCTTAT
1 GAGCCATATAACAGGAAGCTTAT
79083664 CCGGGCTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (25 bp):
GAGCCATATAACAGGAAGCTTATGT
Found at i:79083817 original size:25 final size:24
Alignment explanation
Indices: 79083783--79083833 Score: 75
Period size: 25 Copynumber: 2.1 Consensus size: 24
79083773 AAGTTCAAAC
79083783 GAGCCATATCAAGAAGCTCATAAA
1 GAGCCATATCAAGAAGCTCATAAA
* *
79083807 GAGCCTATATCAGGGAGCTCATAAA
1 GAGCC-ATATCAAGAAGCTCATAAA
79083832 GA
1 GA
79083834 CTTGCGGTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.41, C:0.20, G:0.22, T:0.18
Consensus pattern (24 bp):
GAGCCATATCAAGAAGCTCATAAA
Found at i:79086625 original size:111 final size:112
Alignment explanation
Indices: 79086458--79086680 Score: 326
Period size: 111 Copynumber: 2.0 Consensus size: 112
79086448 TTGAAACAAC
* * * *
79086458 ATAAAATAAAAATTACAAATGTGTTTTTTTAGAAGAGGAATTGAATCTGAGATTTAAGGATGAAA
1 ATAAAATAAAAATTACAAATATG---TTTCAGAAAAGGAATTGAATCTGAGATTTAAGGACGAAA
*
79086523 TCATTATTATTTAACCATTTAACCAA-ATGAGTTAATATATTAAAAATAAA
63 TCATTATTATTTAACCATTTAACCAAGAT-AGCTAATATATTAAAAATAAA
79086573 ATAAAATAAAAATTACAAATATG-TTCAGAAAAGGAATTGAA-CTTGAGATTTAAGGACGAAATC
1 ATAAAATAAAAATTACAAATATGTTTCAGAAAAGGAATTGAATC-TGAGATTTAAGGACGAAATC
*
79086636 ATTATTATTTAACTATTTAACCAAGATAGCTAATATATTAAAAAT
65 ATTATTATTTAACCATTTAACCAAGATAGCTAATATATTAAAAAT
79086681 TATAAATATG
Statistics
Matches: 100, Mismatches: 6, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
110 1 0.01
111 75 0.75
112 2 0.02
115 22 0.22
ACGTcount: A:0.48, C:0.07, G:0.12, T:0.33
Consensus pattern (112 bp):
ATAAAATAAAAATTACAAATATGTTTCAGAAAAGGAATTGAATCTGAGATTTAAGGACGAAATCA
TTATTATTTAACCATTTAACCAAGATAGCTAATATATTAAAAATAAA
Found at i:79088572 original size:19 final size:19
Alignment explanation
Indices: 79088536--79088585 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 19
79088526 TTTTTTAAAA
*
79088536 ATATAAATA-TTAGAATTT
1 ATATAAATATTTTGAATTT
79088554 ATATAAATATTTTGAATTT
1 ATATAAATATTTTGAATTT
*
79088573 -TAAAAATTATTTT
1 ATATAAA-TATTTT
79088586 CAAATCTTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 14 0.50
19 14 0.50
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (19 bp):
ATATAAATATTTTGAATTT
Found at i:79088579 original size:18 final size:20
Alignment explanation
Indices: 79088548--79088585 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
79088538 ATAAATATTA
*
79088548 GAATTTATATAAA-TATTTT
1 GAATTTATAAAAATTATTTT
79088567 GAATTT-TAAAAATTATTTT
1 GAATTTATAAAAATTATTTT
79088586 CAAATCTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (20 bp):
GAATTTATAAAAATTATTTT
Found at i:79091131 original size:22 final size:22
Alignment explanation
Indices: 79091105--79091148 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
79091095 AACTTGAATT
*
79091105 TTAAACTTTTAAAAATATAAAA
1 TTAAACTTTTAAAAATAAAAAA
*
79091127 TTAAACTTTTAGAAATAAAAAA
1 TTAAACTTTTAAAAATAAAAAA
79091149 AACAAACAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.34
Consensus pattern (22 bp):
TTAAACTTTTAAAAATAAAAAA
Found at i:79091155 original size:23 final size:22
Alignment explanation
Indices: 79091107--79091155 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
79091097 CTTGAATTTT
* **
79091107 AAACTTTTAAAAATATAAAATT
1 AAACTTTTAAAAATAAAAAAAC
*
79091129 AAACTTTTAGAAATAAAAAAAAC
1 AAACTTTTAAAAAT-AAAAAAAC
79091152 AAAC
1 AAAC
79091156 AAAATTTGAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 13 0.59
23 9 0.41
ACGTcount: A:0.63, C:0.08, G:0.02, T:0.27
Consensus pattern (22 bp):
AAACTTTTAAAAATAAAAAAAC
Found at i:79095921 original size:26 final size:28
Alignment explanation
Indices: 79095874--79095927 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
79095864 CAAGACGAGC
* * *
79095874 CCAACACACAGCAGAATGAAGAACAAAA
1 CCAACACAAAGCAGAATAAAGAAAAAAA
79095902 CCAACACAAAGCA-AA-AAAGAAAAAAA
1 CCAACACAAAGCAGAATAAAGAAAAAAA
79095928 ATAATAGCCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 9 0.39
27 2 0.09
28 12 0.52
ACGTcount: A:0.65, C:0.22, G:0.11, T:0.02
Consensus pattern (28 bp):
CCAACACAAAGCAGAATAAAGAAAAAAA
Found at i:79103577 original size:12 final size:12
Alignment explanation
Indices: 79103560--79103584 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
79103550 TGAAAATGAA
79103560 TCATTTCCATTT
1 TCATTTCCATTT
79103572 TCATTTCCATTT
1 TCATTTCCATTT
79103584 T
1 T
79103585 TGGAAACCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.00, T:0.60
Consensus pattern (12 bp):
TCATTTCCATTT
Found at i:79106581 original size:30 final size:30
Alignment explanation
Indices: 79106513--79106634 Score: 155
Period size: 30 Copynumber: 4.1 Consensus size: 30
79106503 ACGAAGATGA
79106513 CCACAAATGCATCCA--TTTAACT-GAGATAG
1 CCACAAATGCAT-CATTTTTAA-TAGAGATAG
79106542 CCA-AAATGCATCATTTTTAATAGAGATAG
1 CCACAAATGCATCATTTTTAATAGAGATAG
79106571 CCACAAATGCATCATTTTTAATAGAGATAG
1 CCACAAATGCATCATTTTTAATAGAGATAG
* * *
79106601 CCATAAA-GACATCATTTTTAACAAAGATAG
1 CCACAAATG-CATCATTTTTAATAGAGATAG
79106631 CCAC
1 CCAC
79106635 CAAGGCATTC
Statistics
Matches: 84, Mismatches: 4, Indels: 9
0.87 0.04 0.09
Matches are distributed among these distances:
27 2 0.02
28 9 0.11
29 19 0.23
30 54 0.64
ACGTcount: A:0.41, C:0.20, G:0.12, T:0.27
Consensus pattern (30 bp):
CCACAAATGCATCATTTTTAATAGAGATAG
Found at i:79106629 original size:60 final size:58
Alignment explanation
Indices: 79106498--79106662 Score: 169
Period size: 59 Copynumber: 2.8 Consensus size: 58
79106488 GTAGGTGTCC
*
79106498 TTTTAACGAAGAT-GACCACAAATGCATCCATTTAACTGAGATAGCCAAAATGCATCAT
1 TTTTAACAAAGATAG-CCACAAATGCATCCATTTAACTGAGATAGCCAAAATGCATCAT
* *
79106556 TTTTAATAGAGATAGCCACAAATGCAT-CATTTTTAA-TAGAGATAGCCATAAA-GACATCAT
1 TTTTAACAAAGATAGCCACAAATGCATCCA--TTTAACT-GAGATAGCCA-AAATG-CATCAT
* * **
79106616 TTTTAACAAAGATAGCCACCAAGGCATTCC-TTTAACAAAGATAGCCA
1 TTTTAACAAAGATAGCCACAAATGCA-TCCATTTAACTGAGATAGCCA
79106663 TAAAGGCTTC
Statistics
Matches: 89, Mismatches: 9, Indels: 17
0.77 0.08 0.15
Matches are distributed among these distances:
57 2 0.02
58 23 0.26
59 31 0.35
60 31 0.35
61 1 0.01
62 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.13, T:0.27
Consensus pattern (58 bp):
TTTTAACAAAGATAGCCACAAATGCATCCATTTAACTGAGATAGCCAAAATGCATCAT
Found at i:79106654 original size:29 final size:28
Alignment explanation
Indices: 79106617--79106764 Score: 170
Period size: 29 Copynumber: 5.2 Consensus size: 28
79106607 AGACATCATT
*
79106617 TTTAACAAAGATAGCCACCAAGGCATTCC
1 TTTAACAAAGATAGCCACAAAGGC-TTCC
*
79106646 TTTAACAAAGATAGCCATAAAGGCTTCC
1 TTTAACAAAGATAGCCACAAAGGCTTCC
* * * * * *
79106674 TTTGACAAAAACAACCACAAAGACATTCA
1 TTTAACAAAGATAGCCACAAAGGC-TTCC
*
79106703 TTTAACAAAGATCGCCACAAAGGCTTCC
1 TTTAACAAAGATAGCCACAAAGGCTTCC
* *
79106731 TTATAATAGAGATAGCCACAAAGGCTTCC
1 TT-TAACAAAGATAGCCACAAAGGCTTCC
79106760 TTTAA
1 TTTAA
79106765 TAGAGACAAT
Statistics
Matches: 98, Mismatches: 19, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
28 30 0.31
29 68 0.69
ACGTcount: A:0.41, C:0.24, G:0.13, T:0.23
Consensus pattern (28 bp):
TTTAACAAAGATAGCCACAAAGGCTTCC
Found at i:79106764 original size:57 final size:57
Alignment explanation
Indices: 79106617--79106764 Score: 181
Period size: 57 Copynumber: 2.6 Consensus size: 57
79106607 AGACATCATT
* *
79106617 TTTAACAAAGATAGCCACCAAGGCATTCCTTTAACAAAGATAGCCATAAAGGCTTCC
1 TTTAACAAAGATAGCCACAAAGGCATTCCTTTAACAAAGATAGCCACAAAGGCTTCC
* * * * * * *
79106674 TTTGACAAAAACAACCACAAAGACATTCATTTAACAAAGATCGCCACAAAGGCTTCC
1 TTTAACAAAGATAGCCACAAAGGCATTCCTTTAACAAAGATAGCCACAAAGGCTTCC
* *
79106731 TTATAATAGAGATAGCCACAAAGGC-TTCCTTTAA
1 TT-TAACAAAGATAGCCACAAAGGCATTCCTTTAA
79106765 TAGAGACAAT
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
57 58 0.79
58 15 0.21
ACGTcount: A:0.41, C:0.24, G:0.13, T:0.23
Consensus pattern (57 bp):
TTTAACAAAGATAGCCACAAAGGCATTCCTTTAACAAAGATAGCCACAAAGGCTTCC
Found at i:79106778 original size:28 final size:29
Alignment explanation
Indices: 79106717--79106792 Score: 102
Period size: 28 Copynumber: 2.7 Consensus size: 29
79106707 ACAAAGATCG
* *
79106717 CCACAAAGGCTTCCTTATAATAGAGATAG
1 CCACAAAGGCTTCCTTATAATAGAGACAA
79106746 CCACAAAGGCTTCCTT-TAATAGAGACAA
1 CCACAAAGGCTTCCTTATAATAGAGACAA
*
79106774 TCACAAAGGC-TCACTTATA
1 CCACAAAGGCTTC-CTTATA
79106793 TGGAAATTGA
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
27 2 0.05
28 22 0.52
29 18 0.43
ACGTcount: A:0.38, C:0.24, G:0.14, T:0.24
Consensus pattern (29 bp):
CCACAAAGGCTTCCTTATAATAGAGACAA
Found at i:79106779 original size:86 final size:86
Alignment explanation
Indices: 79106557--79106781 Score: 247
Period size: 86 Copynumber: 2.6 Consensus size: 86
79106547 ATGCATCATT
* * * * * *
79106557 TTTAATAGAGATAGCCACAAATGCATCATTTTTAATAGAGATAGCCATAAAGACATCATTTTTAA
1 TTTAATAGAGATAGCCACAAAGGCTTC--CTTTAATAGAGACAACCACAAAGACATCA-TTTTAA
*
79106622 CAAAGATAGCCACCAAGGCATTCC
63 CAAAGATAGCCACAAAGGCATTCC
* * * * * * *
79106646 TTTAACAAAGATAGCCATAAAGGCTTCCTTTGACAAAAACAACCACAAAGACATTCA-TTTAACA
1 TTTAATAGAGATAGCCACAAAGGCTTCCTTTAATAGAGACAACCACAAAGACA-TCATTTTAACA
*
79106710 AAGATCGCCACAAAGGC-TTCC
65 AAGATAGCCACAAAGGCATTCC
*
79106731 TTATAATAGAGATAGCCACAAAGGCTTCCTTTAATAGAGACAATCACAAAG
1 TT-TAATAGAGATAGCCACAAAGGCTTCCTTTAATAGAGACAACCACAAAG
79106782 GCTCACTTAT
Statistics
Matches: 111, Mismatches: 23, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
85 6 0.05
86 62 0.56
87 18 0.16
88 3 0.03
89 22 0.20
ACGTcount: A:0.42, C:0.21, G:0.13, T:0.24
Consensus pattern (86 bp):
TTTAATAGAGATAGCCACAAAGGCTTCCTTTAATAGAGACAACCACAAAGACATCATTTTAACAA
AGATAGCCACAAAGGCATTCC
Found at i:79117587 original size:72 final size:71
Alignment explanation
Indices: 79117482--79117646 Score: 170
Period size: 72 Copynumber: 2.3 Consensus size: 71
79117472 GACATGTACC
* * * * *
79117482 TTCTCATTACCATACTTCTCATAGTAATAGAATAACCAAAAGAAATAAACAAAACAATACAACAC
1 TTCTCATTACCAAACTTCTTACAATAACAGAATAACCAAAAGAAATAAACAAAACAATACAACAC
79117547 -TCATATT
66 ATC--ATT
* *** * * **
79117554 TTCTCATTACCAAACTTCTTACAATAACCGAATAATTTAAAGAAGTGAATGAAACAATACAACAC
1 TTCTCATTACCAAACTTCTTACAATAACAGAATAACCAAAAGAAATAAACAAAACAATACAACAC
79117619 ATGCATT
66 AT-CATT
*
79117626 TTCTCATTACCACACTTCTTA
1 TTCTCATTACCAAACTTCTTA
79117647 TCTTTAATAA
Statistics
Matches: 77, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
72 75 0.97
73 1 0.01
74 1 0.01
ACGTcount: A:0.44, C:0.22, G:0.05, T:0.29
Consensus pattern (71 bp):
TTCTCATTACCAAACTTCTTACAATAACAGAATAACCAAAAGAAATAAACAAAACAATACAACAC
ATCATT
Found at i:79121096 original size:17 final size:18
Alignment explanation
Indices: 79121076--79121109 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
79121066 ACACAACCAG
79121076 AAAAG-CAACAACAAAAT
1 AAAAGCCAACAACAAAAT
*
79121093 AAAAGCCAACAAGAAAA
1 AAAAGCCAACAACAAAA
79121110 CTGATCTCCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.71, C:0.18, G:0.09, T:0.03
Consensus pattern (18 bp):
AAAAGCCAACAACAAAAT
Found at i:79123727 original size:21 final size:21
Alignment explanation
Indices: 79123701--79123785 Score: 80
Period size: 21 Copynumber: 4.0 Consensus size: 21
79123691 TGATCAGTAT
*
79123701 ACGACACATAAAGTGCCTAAA
1 ACGACACACAAAGTGCCTAAA
* * * *
79123722 ACGACACACGAGGTGCCTGAT
1 ACGACACACAAAGTGCCTAAA
* *
79123743 ACGACACACGAGGTGCCTGAAA
1 ACGACACACAAAGTGCCT-AAA
*
79123765 TACGACACATAAAGTGCCTAA
1 -ACGACACACAAAGTGCCTAA
79123786 TCGATAAAGC
Statistics
Matches: 52, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
21 34 0.65
22 3 0.06
23 15 0.29
ACGTcount: A:0.39, C:0.26, G:0.21, T:0.14
Consensus pattern (21 bp):
ACGACACACAAAGTGCCTAAA
Found at i:79123751 original size:23 final size:22
Alignment explanation
Indices: 79123699--79123773 Score: 91
Period size: 21 Copynumber: 3.5 Consensus size: 22
79123689 CCTGATCAGT
** *
79123699 ATACGACACATAAAGTGCCT-A
1 ATACGACACACGAGGTGCCTGA
*
79123720 AAACGACACACGAGGTGCCTG-
1 ATACGACACACGAGGTGCCTGA
79123741 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACGAGGTGCCTG-A
79123764 ATACGACACA
1 ATACGACACA
79123774 TAAAGTGCCT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
21 36 0.78
23 10 0.22
ACGTcount: A:0.39, C:0.27, G:0.21, T:0.13
Consensus pattern (22 bp):
ATACGACACACGAGGTGCCTGA
Found at i:79124184 original size:15 final size:15
Alignment explanation
Indices: 79124158--79124214 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
79124148 CATATATATT
79124158 ATATAA-TTCAATCA
1 ATATAATTTCAATCA
79124172 ATATAATTTCAATCA
1 ATATAATTTCAATCA
*
79124187 AAATAATTTCAATCA
1 ATATAATTTCAATCA
*
79124202 ATATAAATTCAAT
1 ATATAATTTCAAT
79124215 AAATTCATCG
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
14 6 0.15
15 33 0.85
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (15 bp):
ATATAATTTCAATCA
Found at i:79125493 original size:5 final size:5
Alignment explanation
Indices: 79125485--79125540 Score: 112
Period size: 5 Copynumber: 11.2 Consensus size: 5
79125475 TCTTTAGTTT
79125485 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
79125535 ATATA A
1 ATATA A
79125541 ACATAAAATA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 51 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:79125572 original size:8 final size:8
Alignment explanation
Indices: 79125559--79125587 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
79125549 TATCTTTATT
79125559 ATATAATA
1 ATATAATA
79125567 ATATAATA
1 ATATAATA
79125575 ATATAATA
1 ATATAATA
79125583 ATATA
1 ATATA
79125588 CTAAACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:79130134 original size:23 final size:23
Alignment explanation
Indices: 79130101--79130150 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
79130091 TTGACTAATA
*
79130101 AAATCTCTATATATTAACTCCGT
1 AAATCTCTATATATTAAATCCGT
* *
79130124 AAATCTTTATATATTAAATCTGT
1 AAATCTCTATATATTAAATCCGT
79130147 AAAT
1 AAAT
79130151 ATCCTTATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.40, C:0.14, G:0.04, T:0.42
Consensus pattern (23 bp):
AAATCTCTATATATTAAATCCGT
Found at i:79133406 original size:29 final size:28
Alignment explanation
Indices: 79133345--79133553 Score: 136
Period size: 29 Copynumber: 7.3 Consensus size: 28
79133335 AGAAGTGAGC
* * * *
79133345 TTTGTGGTTGTCTTTGTCAAAGGAAGCC
1 TTTGTGGCTATCTTTGTTAAAGGAAGCT
79133373 TTTGTGGCTATCTTTGTTATAAGGAAGCT
1 TTTGTGGCTATCTTTGTTA-AAGGAAGCT
* * * *
79133402 TTTGTGGCGATATCTGTTAAATGAATG-T
1 TTTGTGGCTATCTTTGTTAAAGGAA-GCT
* * *
79133430 CTTTGTGGTTAT-TTCTGTCAAAGAAAGCT
1 -TTTGTGGCTATCTT-TGTTAAAGGAAGCT
* * **
79133459 TTTGTGACTATCTCTGTTAAAGGAATAT
1 TTTGTGGCTATCTTTGTTAAAGGAAGCT
* * *
79133487 CTCTGTGGCTATCTTTATTAAAAGGATGCCT
1 -TTTGTGGCTATCTTTGTT-AAAGGAAG-CT
* * *
79133518 TTT-TAGCTATCTCTGTTAAAGGAATGCC
1 TTTGTGGCTATCTTTGTTAAAGGAA-GCT
79133546 TTTGTGGC
1 TTTGTGGC
79133554 GAATGCCTTT
Statistics
Matches: 135, Mismatches: 35, Indels: 21
0.71 0.18 0.11
Matches are distributed among these distances:
28 53 0.39
29 73 0.54
30 8 0.06
31 1 0.01
ACGTcount: A:0.22, C:0.13, G:0.22, T:0.42
Consensus pattern (28 bp):
TTTGTGGCTATCTTTGTTAAAGGAAGCT
Found at i:79133436 original size:58 final size:57
Alignment explanation
Indices: 79133345--79133553 Score: 199
Period size: 57 Copynumber: 3.6 Consensus size: 57
79133335 AGAAGTGAGC
* * * * *
79133345 TTTGTGGTTGTCTTTGTCAAAGGAA-GCCTTTGTGGCTATCTTTGTTATAAGGAAGCT
1 TTTGTGGCTATCTCTGTTAAAGGAATGTCTTTGTGGCTATCTTTGTTA-AAGGAAGCT
* * * * * *
79133402 TTTGTGGCGATATCTGTTAAATGAATGTCTTTGTGGTTAT-TTCTGTCAAAGAAAGCT
1 TTTGTGGCTATCTCTGTTAAAGGAATGTCTTTGTGGCTATCTT-TGTTAAAGGAAGCT
* * * * *
79133459 TTTGTGACTATCTCTGTTAAAGGAATATCTCTGTGGCTATCTTTATTAAAAGGATGCCT
1 TTTGTGGCTATCTCTGTTAAAGGAATGTCTTTGTGGCTATCTTTGTT-AAAGGAAG-CT
* *
79133518 TTT-TAGCTATCTCTGTTAAAGGAATGCCTTTGTGGC
1 TTTGTGGCTATCTCTGTTAAAGGAATGTCTTTGTGGC
79133554 GAATGCCTTT
Statistics
Matches: 120, Mismatches: 27, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
57 63 0.52
58 52 0.43
59 5 0.04
ACGTcount: A:0.22, C:0.13, G:0.22, T:0.42
Consensus pattern (57 bp):
TTTGTGGCTATCTCTGTTAAAGGAATGTCTTTGTGGCTATCTTTGTTAAAGGAAGCT
Found at i:79133559 original size:15 final size:15
Alignment explanation
Indices: 79133539--79133568 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
79133529 TCTGTTAAAG
79133539 GAATGCCTTTGTGGC
1 GAATGCCTTTGTGGC
79133554 GAATGCCTTTGTGGC
1 GAATGCCTTTGTGGC
79133569 TATCTTAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.20, G:0.33, T:0.33
Consensus pattern (15 bp):
GAATGCCTTTGTGGC
Found at i:79133602 original size:29 final size:29
Alignment explanation
Indices: 79133556--79133619 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
79133546 TTTGTGGCGA
* * * * *
79133556 ATGCCTTTGTGGCTATCTTAGTTAAATGG
1 ATGCCTTTGAGACCATCTTAGCTAAAAGG
*
79133585 ATGCCTTTGAGACCATCTTTGCTAAAAGG
1 ATGCCTTTGAGACCATCTTAGCTAAAAGG
79133614 ATGCCT
1 ATGCCT
79133620 ACATGGTGAG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.23, C:0.19, G:0.22, T:0.36
Consensus pattern (29 bp):
ATGCCTTTGAGACCATCTTAGCTAAAAGG
Found at i:79137555 original size:18 final size:18
Alignment explanation
Indices: 79137534--79137577 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 18
79137524 TTATTTAATA
79137534 TTTATTA-ATTATATATTT
1 TTTATTACATTATATA-TT
79137552 TTTATTATCATTATATATT
1 TTTATTA-CATTATATATT
79137571 TTTATTA
1 TTTATTA
79137578 TATTTTTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.29
19 9 0.38
20 8 0.33
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTATTACATTATATATT
Found at i:79137574 original size:19 final size:20
Alignment explanation
Indices: 79137541--79137578 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
79137531 ATATTTATTA
79137541 ATTATATATTTTTTATTATC
1 ATTATATATTTTTTATTATC
79137561 ATTATATA-TTTTTATTAT
1 ATTATATATTTTTTATTAT
79137579 ATTTTTAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.66
Consensus pattern (20 bp):
ATTATATATTTTTTATTATC
Found at i:79138568 original size:21 final size:21
Alignment explanation
Indices: 79138543--79138583 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
79138533 TAAACCCTAC
79138543 TTTAAATTCTAAACTCAAGAG
1 TTTAAATTCTAAACTCAAGAG
* *
79138564 TTTAAATTTTAAATTCAAGA
1 TTTAAATTCTAAACTCAAGA
79138584 AGTATTAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.44, C:0.10, G:0.07, T:0.39
Consensus pattern (21 bp):
TTTAAATTCTAAACTCAAGAG
Found at i:79139914 original size:40 final size:40
Alignment explanation
Indices: 79139854--79139982 Score: 215
Period size: 40 Copynumber: 3.2 Consensus size: 40
79139844 GAAACAATAA
*
79139854 TTTATATGCA-CAAATTAACAAAAGTTAATAACTGGGTTG
1 TTTATATGCACCAAATTAACAAAAGTTAATAACTCGGTTG
*
79139893 TTTATATGCACCAAATTAACAAAAGTTAATAACTCGATTG
1 TTTATATGCACCAAATTAACAAAAGTTAATAACTCGGTTG
* *
79139933 TTTATATGCACCAAATTAATAAAAGTCAATAACTCGGTTG
1 TTTATATGCACCAAATTAACAAAAGTTAATAACTCGGTTG
79139973 TTTATATGCA
1 TTTATATGCA
79139983 ACAGATAAGC
Statistics
Matches: 84, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 10 0.12
40 74 0.88
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (40 bp):
TTTATATGCACCAAATTAACAAAAGTTAATAACTCGGTTG
Found at i:79140003 original size:80 final size:79
Alignment explanation
Indices: 79139854--79140004 Score: 214
Period size: 80 Copynumber: 1.9 Consensus size: 79
79139844 GAAACAATAA
* * * **
79139854 TTTATATGCACAAATTAACAAAAGTTAATAACTGGGTTGTTTATATGCACCAAATTAACAAAAGT
1 TTTATATGCACAAATTAACAAAAGTCAATAACTCGGTTGTTTATATGCAACAAATTAACAAAAAA
79139919 TAATAACTCGATTG
66 TAATAACTCGATTG
* *
79139933 TTTATATGCACCAAATTAATAAAAGTCAATAACTCGGTTGTTTATATGCAACAGA-TAAGCAAAA
1 TTTATATGCA-CAAATTAACAAAAGTCAATAACTCGGTTGTTTATATGCAACAAATTAA-CAAAA
79139997 AATAATAA
64 AATAATAA
79140005 ATTAAGTTCA
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
79 13 0.21
80 50 0.79
ACGTcount: A:0.44, C:0.13, G:0.12, T:0.31
Consensus pattern (79 bp):
TTTATATGCACAAATTAACAAAAGTCAATAACTCGGTTGTTTATATGCAACAAATTAACAAAAAA
TAATAACTCGATTG
Found at i:79140004 original size:40 final size:40
Alignment explanation
Indices: 79139854--79140004 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
79139844 GAAACAATAA
* *
79139854 TTTATATGC-ACAAATTAACAAAAGTTAATAACTGGGTTG
1 TTTATATGCAACAAATTAACAAAAATTAATAACTCGGTTG
* * *
79139893 TTTATATGCACCAAATTAACAAAAGTTAATAACTCGATTG
1 TTTATATGCAACAAATTAACAAAAATTAATAACTCGGTTG
* * * *
79139933 TTTATATGCACCAAATTAATAAAAGTCAATAACTCGGTTG
1 TTTATATGCAACAAATTAACAAAAATTAATAACTCGGTTG
* *
79139973 TTTATATGCAACAGA-TAAGCAAAAAATAATAA
1 TTTATATGCAACAAATTAA-CAAAAATTAATAA
79140005 ATTAAGTTCA
Statistics
Matches: 98, Mismatches: 12, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
39 12 0.12
40 86 0.88
ACGTcount: A:0.44, C:0.13, G:0.12, T:0.31
Consensus pattern (40 bp):
TTTATATGCAACAAATTAACAAAAATTAATAACTCGGTTG
Found at i:79148459 original size:66 final size:67
Alignment explanation
Indices: 79148320--79148459 Score: 219
Period size: 66 Copynumber: 2.1 Consensus size: 67
79148310 GAAGGGACTA
*
79148320 TAATAGTTTTAAGCATTATGTAATAAAAAAAGAATAAGAAGATATGATCAGAAATTATTTTAAAA
1 TAATAGTTCTAAGCATTATGTAATAAAAAAAG-A-AAGAAGATATGATCAGAAATTATTTTAAAA
79148385 ATGC
64 ATGC
* *
79148389 TAATAGTTCTAAGCATTATGTAATAAAAAAAG-AAGAAGATATGATTATAAATTATTTTAAAAAT
1 TAATAGTTCTAAGCATTATGTAATAAAAAAAGAAAGAAGATATGATCAGAAATTATTTTAAAAAT
*
79148453 GT
66 GC
79148455 TAATA
1 TAATA
79148460 TTTTTTCTCT
Statistics
Matches: 67, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
66 36 0.54
69 31 0.46
ACGTcount: A:0.51, C:0.04, G:0.12, T:0.34
Consensus pattern (67 bp):
TAATAGTTCTAAGCATTATGTAATAAAAAAAGAAAGAAGATATGATCAGAAATTATTTTAAAAAT
GC
Found at i:79157738 original size:14 final size:15
Alignment explanation
Indices: 79157707--79157738 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
79157697 TATATTATTT
79157707 AAAATGTATAAATAA
1 AAAATGTATAAATAA
79157722 AAAATGTATAAATAA
1 AAAATGTATAAATAA
79157737 AA
1 AA
79157739 TAAATATAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.25
Consensus pattern (15 bp):
AAAATGTATAAATAA
Found at i:79158742 original size:37 final size:37
Alignment explanation
Indices: 79158696--79158772 Score: 154
Period size: 37 Copynumber: 2.1 Consensus size: 37
79158686 TACACACCAA
79158696 CATGTGTAGTTTAAAACACCCACCCATCCCTACACAC
1 CATGTGTAGTTTAAAACACCCACCCATCCCTACACAC
79158733 CATGTGTAGTTTAAAACACCCACCCATCCCTACACAC
1 CATGTGTAGTTTAAAACACCCACCCATCCCTACACAC
79158770 CAT
1 CAT
79158773 ATAGTACCGA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.32, C:0.38, G:0.08, T:0.22
Consensus pattern (37 bp):
CATGTGTAGTTTAAAACACCCACCCATCCCTACACAC
Found at i:79160967 original size:32 final size:34
Alignment explanation
Indices: 79160929--79161000 Score: 89
Period size: 33 Copynumber: 2.2 Consensus size: 34
79160919 AACTTTTATG
*
79160929 AAATATTTTTA-AGAAA-TC-TACCAAACAACAAA
1 AAATATTTTTACACAAATTCAT-CCAAACAACAAA
*
79160961 AAATA-TTTTACACAAATTCATCCAAACACCAAA
1 AAATATTTTTACACAAATTCATCCAAACAACAAA
79160994 AAATATT
1 AAATATT
79161001 AGCTTTTTCA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
31 5 0.15
32 9 0.26
33 18 0.53
34 2 0.06
ACGTcount: A:0.54, C:0.18, G:0.01, T:0.26
Consensus pattern (34 bp):
AAATATTTTTACACAAATTCATCCAAACAACAAA
Found at i:79163056 original size:42 final size:42
Alignment explanation
Indices: 79162963--79163115 Score: 164
Period size: 42 Copynumber: 3.6 Consensus size: 42
79162953 TCTCATGAGC
* * * * * *
79162963 TTCTGTTTAACTCATATGAGTTTCAGTTCAACCCTAATAGG-
1 TTCTGTTCAGCTCTTATGAGCTTCTGTTCAACCCTTATAGGT
* * * *
79163004 TTCTCATTCAGCTCTTTTGAGCTTCTGTTTAACCCTTATGGGT
1 TTCT-GTTCAGCTCTTATGAGCTTCTGTTCAACCCTTATAGGT
* *
79163047 TTTTGTTCAGCTCTTACGAGCTTCTGTTCAACCCTTATAGGT
1 TTCTGTTCAGCTCTTATGAGCTTCTGTTCAACCCTTATAGGT
* *
79163089 TTCTGTTTAGCTCTCATGAGCTTCTGT
1 TTCTGTTCAGCTCTTATGAGCTTCTGT
79163116 CTAGCCTTCG
Statistics
Matches: 90, Mismatches: 20, Indels: 3
0.80 0.18 0.03
Matches are distributed among these distances:
41 4 0.04
42 83 0.92
43 3 0.03
ACGTcount: A:0.18, C:0.22, G:0.16, T:0.44
Consensus pattern (42 bp):
TTCTGTTCAGCTCTTATGAGCTTCTGTTCAACCCTTATAGGT
Found at i:79163074 original size:21 final size:21
Alignment explanation
Indices: 79163050--79163131 Score: 55
Period size: 21 Copynumber: 4.0 Consensus size: 21
79163040 TATGGGTTTT
79163050 TGTTCAGCTCTTACGAGCTTC
1 TGTTCAGCTCTTACGAGCTTC
* * * *
79163071 TGTTCAACCCTTA-TAGGTTTC
1 TGTTCAGCTCTTACGA-GCTTC
* * *
79163092 TGTTTAGCTCTCATGAGCTTC
1 TGTTCAGCTCTTACGAGCTTC
79163113 TG-TCTAGC-CTT-CGAGCTTC
1 TGTTC-AGCTCTTACGAGCTTC
79163132 CAAAAACGAT
Statistics
Matches: 45, Mismatches: 13, Indels: 8
0.68 0.20 0.12
Matches are distributed among these distances:
19 7 0.16
20 4 0.09
21 33 0.73
22 1 0.02
ACGTcount: A:0.15, C:0.27, G:0.18, T:0.40
Consensus pattern (21 bp):
TGTTCAGCTCTTACGAGCTTC
Found at i:79163315 original size:29 final size:29
Alignment explanation
Indices: 79163283--79163341 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
79163273 ACTTTTTATT
79163283 TAAAAAAACGAAAATAGAGTCGCCACCAA
1 TAAAAAAACGAAAATAGAGTCGCCACCAA
79163312 TAAAAAAACGAAAATAGAGTCGCCACCAA
1 TAAAAAAACGAAAATAGAGTCGCCACCAA
79163341 T
1 T
79163342 CATTTTTAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.54, C:0.20, G:0.14, T:0.12
Consensus pattern (29 bp):
TAAAAAAACGAAAATAGAGTCGCCACCAA
Found at i:79166854 original size:141 final size:141
Alignment explanation
Indices: 79166600--79166882 Score: 512
Period size: 141 Copynumber: 2.0 Consensus size: 141
79166590 AGTTAAACTA
*
79166600 ATTTTGTTAAATGATTTTTGACAAAAATGTCAAAAAGGGATTAAATTGTAAAAATATAAAATTAT
1 ATTTTGTTAAATGATTTTTGACAAAAATGTCAAAAAGGGATTAAATTGTAAAAATACAAAATTAT
* *
79166665 GTGGGTAGAAGTGTGAATAAATTGCAAATATGGGCTGCTAGTAATATATAGTAAATTCGGCTAAG
66 GCGGGTAGAAGTGTGAATAAATTGAAAATATGGGCTGCTAGTAATATATAGTAAATTCGGCTAAG
79166730 CATGGGCTGGT
131 CATGGGCTGGT
* * *
79166741 ATTTTGTTAAGTGATTTTTGACAAAAATGTCAAAAAGGGATTAAATTGTGAAAATGCAAAATTAT
1 ATTTTGTTAAATGATTTTTGACAAAAATGTCAAAAAGGGATTAAATTGTAAAAATACAAAATTAT
79166806 GCGGGTAGAAGTGTGAATAAATTGAAAATATGGGCTGCTAGTAATATATAGTAAATTCGGCTAAG
66 GCGGGTAGAAGTGTGAATAAATTGAAAATATGGGCTGCTAGTAATATATAGTAAATTCGGCTAAG
79166871 CATGGGCTGGT
131 CATGGGCTGGT
79166882 A
1 A
79166883 CTAAATTGCA
Statistics
Matches: 136, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
141 136 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.32
Consensus pattern (141 bp):
ATTTTGTTAAATGATTTTTGACAAAAATGTCAAAAAGGGATTAAATTGTAAAAATACAAAATTAT
GCGGGTAGAAGTGTGAATAAATTGAAAATATGGGCTGCTAGTAATATATAGTAAATTCGGCTAAG
CATGGGCTGGT
Found at i:79167398 original size:23 final size:23
Alignment explanation
Indices: 79167372--79167426 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
79167362 CTGCTCATAT
79167372 GAGCTTACTGTTTCAGCTCGTC-A
1 GAGCTTACTGTTTCAGCT-GTCTA
* *
79167395 GAGCTTACCGTTTCAGCTTTCTA
1 GAGCTTACTGTTTCAGCTGTCTA
79167418 GAGCTTACT
1 GAGCTTACT
79167427 ATCCTTTAGC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 2 0.07
23 26 0.93
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.36
Consensus pattern (23 bp):
GAGCTTACTGTTTCAGCTGTCTA
Found at i:79169796 original size:38 final size:37
Alignment explanation
Indices: 79169728--79169803 Score: 91
Period size: 38 Copynumber: 2.0 Consensus size: 37
79169718 TTTCTATGTT
*
79169728 TATATATATTATATAATTTATAGCACATAAAAATTAAA
1 TATATATAATATATAATTTATA-CACATAAAAATTAAA
* *
79169766 TATATAATAATATATAATATTATA-ATATAAATATTAAA
1 TATAT-ATAATATATAAT-TTATACACATAAAAATTAAA
79169804 AAATATTAGT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
38 17 0.52
39 11 0.33
40 5 0.15
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (37 bp):
TATATATAATATATAATTTATACACATAAAAATTAAA
Found at i:79173823 original size:37 final size:37
Alignment explanation
Indices: 79173773--79173847 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
79173763 GACAGGTGAC
79173773 AGGTGAATATAATTTAATTTGTTATTATTTTAGGAGG
1 AGGTGAATATAATTTAATTTGTTATTATTTTAGGAGG
79173810 AGGTGAATATAATTTAATTTGTTATTATTTTAGGAGG
1 AGGTGAATATAATTTAATTTGTTATTATTTTAGGAGG
79173847 A
1 A
79173848 TGGAGGTTCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.45
Consensus pattern (37 bp):
AGGTGAATATAATTTAATTTGTTATTATTTTAGGAGG
Found at i:79182459 original size:21 final size:21
Alignment explanation
Indices: 79182435--79182475 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
79182425 CCGATCAGAC
* *
79182435 TTATCATAATACAGGTCATAA
1 TTATCATAACACAGATCATAA
79182456 TTATCATAACACAGATCATA
1 TTATCATAACACAGATCATA
79182476 CTGAGCATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.44, C:0.17, G:0.07, T:0.32
Consensus pattern (21 bp):
TTATCATAACACAGATCATAA
Found at i:79185051 original size:19 final size:18
Alignment explanation
Indices: 79185029--79185076 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
79185019 AATAGCACGT
79185029 AAAGTGCATACTGGCACAC
1 AAAGTGCAT-CTGGCACAC
*
79185048 AAAGTGCATCTTGACACAC
1 AAAGTGCATC-TGGCACAC
*
79185067 GAAGTGCATC
1 AAAGTGCATC
79185077 CTGGTGCTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 1 0.04
19 25 0.96
ACGTcount: A:0.35, C:0.25, G:0.21, T:0.19
Consensus pattern (18 bp):
AAAGTGCATCTGGCACAC
Found at i:79194952 original size:27 final size:27
Alignment explanation
Indices: 79194914--79194965 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
79194904 ATGGTAATAA
*
79194914 TGATAATCTAAATTTTAGAAATTTTTT
1 TGATAATATAAATTTTAGAAATTTTTT
79194941 TGATAATATAAATTTTAGAAATTTT
1 TGATAATATAAATTTTAGAAATTTT
79194966 AAGAACAACA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.40, C:0.02, G:0.08, T:0.50
Consensus pattern (27 bp):
TGATAATATAAATTTTAGAAATTTTTT
Found at i:79195910 original size:20 final size:20
Alignment explanation
Indices: 79195885--79195924 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
79195875 GTTGGGCCTT
79195885 GCCCATATTAACACAGTTGG
1 GCCCATATTAACACAGTTGG
* *
79195905 GCCCATTTTAATACAGTTGG
1 GCCCATATTAACACAGTTGG
79195925 CCTATAACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (20 bp):
GCCCATATTAACACAGTTGG
Found at i:79199801 original size:7 final size:7
Alignment explanation
Indices: 79199785--79199984 Score: 69
Period size: 7 Copynumber: 26.9 Consensus size: 7
79199775 TATCATTAGA
*
79199785 GTTTAAG
1 GTTTATG
79199792 GTTTATG
1 GTTTATG
79199799 GTTTATG
1 GTTTATG
79199806 GTTTAGGCTGG
1 GTTTA---T-G
* *
79199817 GTATGTG
1 GTTTATG
*
79199824 GTTTAGG
1 GTTTATG
79199831 GTTTATG
1 GTTTATG
79199838 GTTTATGATG
1 G-TT-T-ATG
* *
79199848 AGTTAATA
1 -GTTTATG
* *
79199856 TTTTAAG
1 GTTTATG
79199863 GTTTATG
1 GTTTATG
*
79199870 GATTATGG
1 GTTTAT-G
79199878 GTTTA-G
1 GTTTATG
*
79199884 GATTATGG
1 GTTTAT-G
*
79199892 GTTTAGG
1 GTTTATG
*
79199899 GTTTAAG
1 GTTTATG
*
79199906 GTTTAAGG
1 GTTT-ATG
79199914 GTTTATG
1 GTTTATG
79199921 GTTTATG
1 GTTTATG
* * *
79199928 AATTAATA
1 -GTTTATG
* *
79199936 TTTTAAG
1 GTTTATG
79199943 GTTTATG
1 GTTTATG
*
79199950 GATTATG
1 GTTTATG
*
79199957 GATTATG
1 GTTTATG
* *
79199964 GATCTAGG
1 G-TTTATG
*
79199972 GATTATG
1 GTTTATG
79199979 GTTTAT
1 GTTTAT
79199985 AGTTCAAGGG
Statistics
Matches: 139, Mismatches: 40, Indels: 28
0.67 0.19 0.14
Matches are distributed among these distances:
6 5 0.04
7 93 0.67
8 29 0.21
9 1 0.01
10 6 0.04
11 5 0.04
ACGTcount: A:0.23, C:0.01, G:0.29, T:0.47
Consensus pattern (7 bp):
GTTTATG
Found at i:79199916 original size:15 final size:15
Alignment explanation
Indices: 79199891--79199925 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
79199881 TAGGATTATG
79199891 GGTTT-AGGGTTTAA
1 GGTTTAAGGGTTTAA
*
79199905 GGTTTAAGGGTTTAT
1 GGTTTAAGGGTTTAA
79199920 GGTTTA
1 GGTTTA
79199926 TGAATTAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.20, C:0.00, G:0.34, T:0.46
Consensus pattern (15 bp):
GGTTTAAGGGTTTAA
Found at i:79199933 original size:29 final size:29
Alignment explanation
Indices: 79199901--79199984 Score: 73
Period size: 29 Copynumber: 2.9 Consensus size: 29
79199891 GGTTTAGGGT
79199901 TTAAGGTTTAAGGGTTTATGGTTTATGAA
1 TTAAGGTTTAAGGGTTTATGGTTTATGAA
** * *
79199930 TTAATATTTTAA-GGTTTATGGATTATGGA
1 TTAA-GGTTTAAGGGTTTATGGTTTATGAA
* * *
79199959 TTATGGATCT-AGGGATTATGGTTTAT
1 TTAAGG-TTTAAGGGTTTATGGTTTAT
79199985 AGTTCAAGGG
Statistics
Matches: 42, Mismatches: 10, Indels: 6
0.72 0.17 0.10
Matches are distributed among these distances:
28 1 0.02
29 36 0.86
30 5 0.12
ACGTcount: A:0.27, C:0.01, G:0.25, T:0.46
Consensus pattern (29 bp):
TTAAGGTTTAAGGGTTTATGGTTTATGAA
Found at i:79199976 original size:15 final size:14
Alignment explanation
Indices: 79199945--79199979 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
79199935 ATTTTAAGGT
*
79199945 TTATGGATTATGGA
1 TTATGGATTAGGGA
79199959 TTATGGATCTAGGGA
1 TTATGGAT-TAGGGA
79199974 TTATGG
1 TTATGG
79199980 TTTATAGTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.42
15 11 0.58
ACGTcount: A:0.26, C:0.03, G:0.31, T:0.40
Consensus pattern (14 bp):
TTATGGATTAGGGA
Found at i:79199982 original size:80 final size:83
Alignment explanation
Indices: 79199823--79200004 Score: 236
Period size: 80 Copynumber: 2.3 Consensus size: 83
79199813 CTGGGTATGT
*
79199823 GGTTT-AGGGTTTATGGTTTATGATGAGTTAATATTTTAAGGTTTATGGATTATGGGTTTAGGAT
1 GGTTTAAGGGTTTATGGTTTATGA-GAGTTAATATTTTAAGGTTTATGGATTATGGATTTAGGAT
*
79199887 TATGGGTTTAGGGTTTA-A
65 TATGGGATTAGGGTTTATA
79199905 GGTTTAAGGGTTTATGGTTTATGA-A-TTAATATTTTAAGGTTTATGGATTATGGA-TTATGGAT
1 GGTTTAAGGGTTTATGGTTTATGAGAGTTAATATTTTAAGGTTTATGGATTATGGATTTA-GGAT
*
79199967 CTA-GGGATTATGGTTTATA
65 -TATGGGATTAGGGTTTATA
* *
79199986 -GTTCAAGGGTTGA-GGTTTA
1 GGTTTAAGGGTTTATGGTTTA
79200005 GGGGTTAATA
Statistics
Matches: 91, Mismatches: 5, Indels: 11
0.85 0.05 0.10
Matches are distributed among these distances:
79 9 0.10
80 55 0.60
81 4 0.04
82 5 0.05
83 18 0.20
ACGTcount: A:0.25, C:0.01, G:0.29, T:0.45
Consensus pattern (83 bp):
GGTTTAAGGGTTTATGGTTTATGAGAGTTAATATTTTAAGGTTTATGGATTATGGATTTAGGATT
ATGGGATTAGGGTTTATA
Found at i:79199994 original size:22 final size:22
Alignment explanation
Indices: 79199949--79199994 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
79199939 TAAGGTTTAT
* *
79199949 GGATTATGGATTATGGATCTAG
1 GGATTATGGATTATAGATCAAG
* *
79199971 GGATTATGGTTTATAGTTCAAG
1 GGATTATGGATTATAGATCAAG
79199993 GG
1 GG
79199995 TTGAGGTTTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.26, C:0.04, G:0.33, T:0.37
Consensus pattern (22 bp):
GGATTATGGATTATAGATCAAG
Found at i:79200076 original size:21 final size:22
Alignment explanation
Indices: 79200050--79200103 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
79200040 AGGGTTTATA
* *
79200050 GTTTAGGGTTTTGG-GGATATG
1 GTTTAGGGGTTTGGTGGACATG
79200071 GTTTAGGGGTTTGGTGGACATG
1 GTTTAGGGGTTTGGTGGACATG
79200093 GTTTAGGGGTT
1 GTTTAGGGGTT
79200104 AGAGTTTATG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 13 0.43
22 17 0.57
ACGTcount: A:0.13, C:0.02, G:0.44, T:0.41
Consensus pattern (22 bp):
GTTTAGGGGTTTGGTGGACATG
Found at i:79200968 original size:33 final size:33
Alignment explanation
Indices: 79200884--79200972 Score: 124
Period size: 33 Copynumber: 2.7 Consensus size: 33
79200874 TCACCCATTT
* ** *
79200884 TTCCCCAATTTGACATCCAAAAATAATCCCTTC
1 TTCCCCAATTTGAAATCCCTAAATAATCCCTTA
79200917 TTCCCCAATTTGAAATCCCTAAATAATCCCTTA
1 TTCCCCAATTTGAAATCCCTAAATAATCCCTTA
* *
79200950 TTTCCTAATTTGAAATCCCTAAA
1 TTCCCCAATTTGAAATCCCTAAA
79200973 ATTCACCTCC
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 50 1.00
ACGTcount: A:0.34, C:0.29, G:0.03, T:0.34
Consensus pattern (33 bp):
TTCCCCAATTTGAAATCCCTAAATAATCCCTTA
Done.