Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 24 of 276
Found at i:7516880 original size:28 final size:28
Alignment explanation
Indices: 7516817--7516942 Score: 182
Period size: 28 Copynumber: 4.5 Consensus size: 28
7516807 ATATTAAGTC
*
7516817 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
7516844 CACACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
7516872 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
7516900 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
7516929 CGCACACTTAGTGC
1 CGCACACTTAGTGC
7516943 CAATCTCATG
Statistics
Matches: 90, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 21 0.23
28 50 0.56
29 19 0.21
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:7516887 original size:55 final size:57
Alignment explanation
Indices: 7516816--7516942 Score: 186
Period size: 55 Copynumber: 2.3 Consensus size: 57
7516806 TATATTAAGT
* *
7516816 CCGCACACTCAGTGCTATATAATC-AACTCACACACTTAGTGCTATATAA-TCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCACACACTTAGTGCTATACAATTCAAAC
* * * *
7516871 TCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTGTACAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCACACACTTAGTGCTATACAATTCAAAC
7516928 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
7516943 CAATCTCATG
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
55 22 0.35
56 22 0.35
57 19 0.30
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.27
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCACACACTTAGTGCTATACAATTCAAAC
Found at i:7534088 original size:20 final size:21
Alignment explanation
Indices: 7534065--7534104 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
7534055 TATCAGTACC
7534065 TCCTCT-ATGGTATCAATATT
1 TCCTCTAATGGTATCAATATT
*
7534085 TCCTTTAAATGGTATCAATA
1 TCCTCT-AATGGTATCAATA
7534105 CCACCTGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
22 12 0.71
ACGTcount: A:0.30, C:0.17, G:0.10, T:0.42
Consensus pattern (21 bp):
TCCTCTAATGGTATCAATATT
Found at i:7537509 original size:15 final size:15
Alignment explanation
Indices: 7537486--7537522 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
7537476 GGATTAAATA
7537486 GATCATTCAGACCAG
1 GATCATTCAGACCAG
* *
7537501 GATCGTTCAGACTAG
1 GATCATTCAGACCAG
7537516 GATCATT
1 GATCATT
7537523 TCCGTCCCTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (15 bp):
GATCATTCAGACCAG
Found at i:7546136 original size:9 final size:9
Alignment explanation
Indices: 7546122--7546182 Score: 50
Period size: 9 Copynumber: 6.6 Consensus size: 9
7546112 TTATTTAAAA
7546122 TGAGAGAGT
1 TGAGAGAGT
*
7546131 TGAGAGACT
1 TGAGAGAGT
*
7546140 TGAGAGGGTT
1 TGAGAGAG-T
*
7546150 TGAGAGAATT
1 TGAGAG-AGT
* * *
7546160 TGACAAAAT
1 TGAGAGAGT
7546169 TGAGAGAGT
1 TGAGAGAGT
7546178 TGAGA
1 TGAGA
7546183 AAAGGATATG
Statistics
Matches: 39, Mismatches: 11, Indels: 4
0.72 0.20 0.07
Matches are distributed among these distances:
9 27 0.69
10 12 0.31
ACGTcount: A:0.36, C:0.03, G:0.36, T:0.25
Consensus pattern (9 bp):
TGAGAGAGT
Found at i:7559337 original size:19 final size:18
Alignment explanation
Indices: 7559290--7559339 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 18
7559280 AAAATATTTC
*
7559290 TTTTAAAAAATCTAAAAAA
1 TTTTAAAAAAT-AAAAAAA
7559309 TATTT-AAAAATAAATAAAA
1 T-TTTAAAAAATAAA-AAAA
7559328 TTTTAAAAAATA
1 TTTTAAAAAATA
7559340 TAACTTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 5 0.19
19 19 0.70
20 3 0.11
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (18 bp):
TTTTAAAAAATAAAAAAA
Found at i:7559745 original size:16 final size:16
Alignment explanation
Indices: 7559724--7559766 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
7559714 TTTATGCTTG
7559724 TGAAAAAAATGAAAAA
1 TGAAAAAAATGAAAAA
*
7559740 TGAAAAGAAA-GAGAAA
1 TGAAAA-AAATGAAAAA
*
7559756 TGCAAAAAATG
1 TGAAAAAAATG
7559767 GATTCAAGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 3 0.13
16 17 0.74
17 3 0.13
ACGTcount: A:0.67, C:0.02, G:0.19, T:0.12
Consensus pattern (16 bp):
TGAAAAAAATGAAAAA
Found at i:7561711 original size:32 final size:31
Alignment explanation
Indices: 7561650--7561715 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 31
7561640 TTAGTGGTTG
* *
7561650 TGAGGTCTAGTTTTACATAGTGTCTTAGTTT
1 TGAGGTCTAGTTTTACATAGTGACCTAGTTT
*
7561681 TGAGGTCTA-TTTTAGATTTAGTGACCTAGTTT
1 TGAGGTCTAGTTTTACA--TAGTGACCTAGTTT
7561713 TGA
1 TGA
7561716 ATTTTTTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
30 6 0.20
31 9 0.30
32 15 0.50
ACGTcount: A:0.21, C:0.09, G:0.23, T:0.47
Consensus pattern (31 bp):
TGAGGTCTAGTTTTACATAGTGACCTAGTTT
Found at i:7567171 original size:17 final size:17
Alignment explanation
Indices: 7567149--7567181 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7567139 GAAATTAAAT
*
7567149 TGGGCGGTTGTGAGAAA
1 TGGGCGGTCGTGAGAAA
7567166 TGGGCGGTCGTGAGAA
1 TGGGCGGTCGTGAGAA
7567182 TTGTTCAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.09, G:0.48, T:0.21
Consensus pattern (17 bp):
TGGGCGGTCGTGAGAAA
Found at i:7570956 original size:30 final size:30
Alignment explanation
Indices: 7570911--7570999 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
7570901 CAAAGATAAC
*
7570911 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
7570940 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
7570970 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
7571000 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:7570959 original size:15 final size:14
Alignment explanation
Indices: 7570911--7570993 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
7570901 CAAAGATAAC
*
7570911 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
7570925 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
7570940 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
7570955 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
7570970 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
7570985 AAGAAACCC
1 AAGAAACCC
7570994 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:7570999 original size:15 final size:15
Alignment explanation
Indices: 7570922--7570999 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
7570912 AGAAAACCGA
7570922 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
7570937 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
7570951 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
7570966 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
7570982 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
7570997 ATA
1 ATA
7571000 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:7574048 original size:93 final size:93
Alignment explanation
Indices: 7573936--7574106 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
7573926 GCCCATAAGT
* *
7573936 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
7574001 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
7574029 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
7574094 CGAGTTCGGATGC
66 CGAGTTCGGATGC
7574107 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:7574103 original size:46 final size:46
Alignment explanation
Indices: 7573928--7574103 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
7573918 TGTAACCCGC
* * *
7573928 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
7573974 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
7574024 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
7574067 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
7574104 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:7575499 original size:17 final size:17
Alignment explanation
Indices: 7575479--7575511 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7575469 TTAATAAATT
7575479 TAATATTTAATTTAATG
1 TAATATTTAATTTAATG
*
7575496 TAATATTTACTTTAAT
1 TAATATTTAATTTAAT
7575512 AGTATTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.55
Consensus pattern (17 bp):
TAATATTTAATTTAATG
Found at i:7578311 original size:46 final size:46
Alignment explanation
Indices: 7578261--7578479 Score: 257
Period size: 46 Copynumber: 4.7 Consensus size: 46
7578251 TTGAGCATCT
* * *
7578261 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
* * * * *
7578307 GAACTTGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC--CC
*
7578354 GAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
*
7578400 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
* *
7578446 GAGCTCGTTGAGTTGAGTCCGAGTTCAGTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
7578480 GCGGGTTACA
Statistics
Matches: 148, Mismatches: 16, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
42 2 0.01
43 3 0.02
45 3 0.02
46 104 0.70
47 26 0.18
48 4 0.03
50 3 0.02
51 3 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
Found at i:7578414 original size:93 final size:93
Alignment explanation
Indices: 7578255--7578425 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
7578245 GGATGGTTGA
* * * * * *
7578255 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTCCGAACTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
7578320 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
7578348 GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
7578413 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
7578426 ACTTATGGAT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:7587554 original size:12 final size:12
Alignment explanation
Indices: 7587537--7587570 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
7587527 ATTTTTGTTC
*
7587537 TTTTTGTTTTTG
1 TTTTTGTTTTTA
7587549 TTTTTGTTTTTA
1 TTTTTGTTTTTA
*
7587561 TTTTTATTTT
1 TTTTTGTTTT
7587571 ATTATGCGCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.06, C:0.00, G:0.09, T:0.85
Consensus pattern (12 bp):
TTTTTGTTTTTA
Found at i:7590748 original size:5 final size:5
Alignment explanation
Indices: 7590738--7590769 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
7590728 ATTGCTGTGA
7590738 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
7590770 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:7600657 original size:6 final size:6
Alignment explanation
Indices: 7600648--7600672 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
7600638 TTTTATTTTG
7600648 AAAATA AAAATA AAAATA AAAATA A
1 AAAATA AAAATA AAAATA AAAATA A
7600673 CGAAGCCCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:7601630 original size:177 final size:177
Alignment explanation
Indices: 7601334--7601687 Score: 663
Period size: 177 Copynumber: 2.0 Consensus size: 177
7601324 ACTCACCCGA
7601334 ATGGCACTTATTACAGAACCCACAAACTGGAATATCTATGCCACTGCTAGAACCACTCACATTAT
1 ATGGCACTTATTACAGAACCCACAAACTGGAATATCTATGCCACTGCTAGAACCACTCACATTAT
* *
7601399 TTTTTCCAACATGATGTTGAGACCTAACCTGCTTCGTAGATCGTAGCTCTAAACTAGAAAGACTA
66 TTTTTCCAACATGATGTTGAGACCTAACCCGCTTCGTAGATCGCAGCTCTAAACTAGAAAGACTA
7601464 GGGCCTCTCTTATTTCGAACCTTACCTTCACACTTAATACACTTATC
131 GGGCCTCTCTTATTTCGAACCTTACCTTCACACTTAATACACTTATC
*
7601511 ATGGCACTTATTACAGAACCCACAAACTGGAATATCTATGCCACTGCTAGAACCACTTACATTAT
1 ATGGCACTTATTACAGAACCCACAAACTGGAATATCTATGCCACTGCTAGAACCACTCACATTAT
*
7601576 TTTTTCCAACATGATGTTGAGACCTAGCCCGCTTCGTAGATCGCAGCTCTAAACTAGAAAGACTA
66 TTTTTCCAACATGATGTTGAGACCTAACCCGCTTCGTAGATCGCAGCTCTAAACTAGAAAGACTA
*
7601641 GGGCCTCTTTTATTTCGAACCTTACCTTCACACTTAATACACTTATC
131 GGGCCTCTCTTATTTCGAACCTTACCTTCACACTTAATACACTTATC
7601688 CATATTTTCC
Statistics
Matches: 172, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
177 172 1.00
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.30
Consensus pattern (177 bp):
ATGGCACTTATTACAGAACCCACAAACTGGAATATCTATGCCACTGCTAGAACCACTCACATTAT
TTTTTCCAACATGATGTTGAGACCTAACCCGCTTCGTAGATCGCAGCTCTAAACTAGAAAGACTA
GGGCCTCTCTTATTTCGAACCTTACCTTCACACTTAATACACTTATC
Found at i:7611771 original size:17 final size:17
Alignment explanation
Indices: 7611749--7611782 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
7611739 ATATCATATC
7611749 ATATCATATCTAAGATT
1 ATATCATATCTAAGATT
7611766 ATATCATATCTAAGATT
1 ATATCATATCTAAGATT
7611783 GCATATCCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.06, T:0.41
Consensus pattern (17 bp):
ATATCATATCTAAGATT
Found at i:7615371 original size:54 final size:54
Alignment explanation
Indices: 7615284--7615391 Score: 180
Period size: 54 Copynumber: 2.0 Consensus size: 54
7615274 ATCATATTGG
* * *
7615284 GAGAACAAATTTATCCCAAAAAGATTAAGGATATCTAATGAGGGTAACATACTT
1 GAGAAAAAATTTATCCCAAAAAGATTAAAGATATCTAATGAGGGTAACACACTT
*
7615338 GAGAAAAAATTTATCCCAAAGAGATTAAAGATATCTAATGAGGGTAACACACTT
1 GAGAAAAAATTTATCCCAAAAAGATTAAAGATATCTAATGAGGGTAACACACTT
7615392 ATGACAATGT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.45, C:0.13, G:0.17, T:0.25
Consensus pattern (54 bp):
GAGAAAAAATTTATCCCAAAAAGATTAAAGATATCTAATGAGGGTAACACACTT
Found at i:7615902 original size:16 final size:15
Alignment explanation
Indices: 7615881--7615925 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 15
7615871 TTGGATTGAG
*
7615881 AAAATTATTTAATTAT
1 AAAATTAATTAATT-T
7615897 AAAATTAATTAATTT
1 AAAATTAATTAATTT
7615912 -AAATTAAATTAATT
1 AAAATT-AATTAATT
7615926 AATAATTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 5 0.19
15 9 0.33
16 13 0.48
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
AAAATTAATTAATTT
Found at i:7623420 original size:13 final size:14
Alignment explanation
Indices: 7623404--7623445 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
7623394 TTTTAATTTT
7623404 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
7623417 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
7623432 ATTTTAAATAATAT
1 ATTTT-AATAATAT
7623446 TATTCAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:7623430 original size:16 final size:16
Alignment explanation
Indices: 7623408--7623444 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
7623398 AATTTTATTT
7623408 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
7623425 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
7623440 TAATA
1 TAATA
7623445 TTATTCAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:7623497 original size:15 final size:15
Alignment explanation
Indices: 7623477--7623533 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
7623467 ATTCAATATT
7623477 AATATTTTAATAATA
1 AATATTTTAATAATA
*
7623492 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
* *
7623511 GATATATTAATAATA
1 AATATTTTAATAATA
7623526 AATATTTT
1 AATATTTT
7623534 GTAGTATAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
15 16 0.50
16 2 0.06
17 4 0.12
18 1 0.03
19 9 0.28
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:7626331 original size:16 final size:17
Alignment explanation
Indices: 7626305--7626339 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
7626295 TAAAATTAGG
*
7626305 TTGAGAAAATTATTTAA
1 TTGAGAAAATTAATTAA
7626322 TTGA-AAAATTAATTAA
1 TTGAGAAAATTAATTAA
7626338 TT
1 TT
7626340 TAAATTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (17 bp):
TTGAGAAAATTAATTAA
Found at i:7647686 original size:43 final size:43
Alignment explanation
Indices: 7647571--7647675 Score: 174
Period size: 43 Copynumber: 2.4 Consensus size: 43
7647561 TGTGATTACA
**
7647571 TGTAAGACCATGTCTGGGACATTGGCATCGTTATTCAATTTCG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTTATTTGATTTCG
*
7647614 TATAAGACCATGTCTGGGACATTGGCATCGTTATTTGATTTCG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTTATTTGATTTCG
*
7647657 TGTAAGACCTTGTCTGGGA
1 TGTAAGACCATGTCTGGGA
7647676 TAGAAGCATC
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGTTATTTGATTTCG
Found at i:7651520 original size:14 final size:14
Alignment explanation
Indices: 7651501--7651530 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7651491 AATCACATGA
*
7651501 ATGTATATATGTAT
1 ATGTATATATATAT
7651515 ATGTATATATATAT
1 ATGTATATATATAT
7651529 AT
1 AT
7651531 ATACACTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (14 bp):
ATGTATATATATAT
Found at i:7652196 original size:41 final size:41
Alignment explanation
Indices: 7652139--7652220 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
7652129 GTGGAAGATG
7652139 GAATAAATGAGATGAGAATACTTTTCATCTTTCATTCCACT
1 GAATAAATGAGATGAGAATACTTTTCATCTTTCATTCCACT
7652180 GAATAAATGAGATGAGAATACTTTTCATCTTTCATTCCACT
1 GAATAAATGAGATGAGAATACTTTTCATCTTTCATTCCACT
7652221 AATTAACATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.37
Consensus pattern (41 bp):
GAATAAATGAGATGAGAATACTTTTCATCTTTCATTCCACT
Found at i:7654732 original size:11 final size:11
Alignment explanation
Indices: 7654706--7654743 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
7654696 TTACATGAAA
*
7654706 ATTTTA-AATA
1 ATTTTATAATT
7654716 ATTTTATAATT
1 ATTTTATAATT
7654727 ATTTTATAATT
1 ATTTTATAATT
7654738 ATTTTA
1 ATTTTA
7654744 AAAATTATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
10 6 0.23
11 20 0.77
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (11 bp):
ATTTTATAATT
Found at i:7654751 original size:23 final size:21
Alignment explanation
Indices: 7654706--7654751 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
7654696 TTACATGAAA
*
7654706 ATTTTAAATAATTTTATAATT
1 ATTTTAAATAATTTTAAAATT
*
7654727 ATTTTATAATTATTTTAAAAATT
1 ATTTTA-AATAATTTT-AAAATT
7654750 AT
1 AT
7654752 AAAATCAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.29
22 8 0.38
23 7 0.33
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
ATTTTAAATAATTTTAAAATT
Found at i:7655275 original size:25 final size:26
Alignment explanation
Indices: 7655208--7655272 Score: 62
Period size: 25 Copynumber: 2.6 Consensus size: 26
7655198 GATTTTTTTA
* *
7655208 ATAA-TTATAATATAATACAAAATAT
1 ATAATTTATAATATAATATAAAATAC
* * * *
7655233 TTAATTT-TTATATGATATAAATTAC
1 ATAATTTATAATATAATATAAAATAC
7655258 ATAATTTATAATATA
1 ATAATTTATAATATA
7655273 TATTAGGATA
Statistics
Matches: 29, Mismatches: 9, Indels: 3
0.71 0.22 0.07
Matches are distributed among these distances:
25 22 0.76
26 7 0.24
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.45
Consensus pattern (26 bp):
ATAATTTATAATATAATATAAAATAC
Found at i:7662809 original size:43 final size:42
Alignment explanation
Indices: 7662747--7662866 Score: 152
Period size: 43 Copynumber: 2.8 Consensus size: 42
7662737 TACCGTACCA
*
7662747 ATGCCATATCCCAGGTATGGTCTTACATGAAATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCTCATATCG
* * *
7662789 ATGCCA-ATTGCCCAGCTATGGTCTTACACGAAGTCTCATATCG
1 ATGCCATA-T-CCCAGATATGGTCTTACATGAAATCTCATATCG
* * *
7662832 ATGCCGTATCCTAGATATGGTCTTACATGTAATCT
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCT
7662867 TAGTAAGCCT
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
41 1 0.02
42 28 0.42
43 36 0.55
44 1 0.02
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGAAATCTCATATCG
Found at i:7664049 original size:7 final size:7
Alignment explanation
Indices: 7664037--7664104 Score: 82
Period size: 7 Copynumber: 9.3 Consensus size: 7
7664027 TTCTATGTTG
7664037 GGGTTTA
1 GGGTTTA
7664044 GGGTTTA
1 GGGTTTA
7664051 GGGTTTA
1 GGGTTTA
7664058 GGGTTTTA
1 GGG-TTTA
*
7664066 AGGTTTA
1 GGGTTTA
*
7664073 GAGTTTTA
1 G-GGTTTA
7664081 GGGTTTTA
1 GGG-TTTA
7664089 GGGTTTA
1 GGGTTTA
*
7664096 AGGTTTA
1 GGGTTTA
7664103 GG
1 GG
7664105 ATTTGGTCCT
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
7 33 0.63
8 19 0.37
ACGTcount: A:0.18, C:0.00, G:0.38, T:0.44
Consensus pattern (7 bp):
GGGTTTA
Found at i:7664070 original size:15 final size:14
Alignment explanation
Indices: 7664038--7664104 Score: 80
Period size: 15 Copynumber: 4.6 Consensus size: 14
7664028 TCTATGTTGG
*
7664038 GGTTTAGGGTTTAG
1 GGTTTAGGGTTTAA
7664052 GGTTTAGGGTTTTAA
1 GGTTTAGGG-TTTAA
* *
7664067 GGTTTAGAGTTTTAG
1 GGTTTAG-GGTTTAA
7664082 GGTTTTAGGGTTTAA
1 GG-TTTAGGGTTTAA
7664097 GGTTTAGG
1 GGTTTAGG
7664105 ATTTGGTCCT
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
14 15 0.33
15 24 0.53
16 6 0.13
ACGTcount: A:0.18, C:0.00, G:0.37, T:0.45
Consensus pattern (14 bp):
GGTTTAGGGTTTAA
Found at i:7670937 original size:9 final size:9
Alignment explanation
Indices: 7670923--7671032 Score: 103
Period size: 9 Copynumber: 11.6 Consensus size: 9
7670913 ATGTATTAGT
7670923 TAAGTTATG
1 TAAGTTATG
7670932 TAAGTTGTTATG
1 TAA---GTTATG
*
7670944 TAAATTATG
1 TAAGTTATG
7670953 TAAGTTATG
1 TAAGTTATG
*
7670962 TGAGTTATG
1 TAAGTTATG
7670971 TAAGTTGTTATG
1 TAA---GTTATG
*
7670983 TAAATTATG
1 TAAGTTATG
*
7670992 TAAGTTATA
1 TAAGTTATG
*
7671001 TGAGTTATG
1 TAAGTTATG
7671010 TAAGTTATG
1 TAAGTTATG
* *
7671019 TAATTTATT
1 TAAGTTATG
7671028 TAAGT
1 TAAGT
7671033 AATGATCAAT
Statistics
Matches: 82, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
9 64 0.78
12 18 0.22
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:7670953 original size:21 final size:21
Alignment explanation
Indices: 7670927--7670997 Score: 103
Period size: 21 Copynumber: 3.5 Consensus size: 21
7670917 ATTAGTTAAG
7670927 TTATGTAAGTTGTTATGTAAA
1 TTATGTAAGTTGTTATGTAAA
* *
7670948 TTATGTAA---GTTATGTGAG
1 TTATGTAAGTTGTTATGTAAA
7670966 TTATGTAAGTTGTTATGTAAA
1 TTATGTAAGTTGTTATGTAAA
7670987 TTATGTAAGTT
1 TTATGTAAGTT
7670998 ATATGAGTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
18 16 0.37
21 27 0.63
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.48
Consensus pattern (21 bp):
TTATGTAAGTTGTTATGTAAA
Found at i:7670968 original size:39 final size:39
Alignment explanation
Indices: 7670925--7671015 Score: 173
Period size: 39 Copynumber: 2.3 Consensus size: 39
7670915 GTATTAGTTA
*
7670925 AGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATGTG
1 AGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATG
7670964 AGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATG
1 AGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATG
7671003 AGTTATGTAAGTT
1 AGTTATGTAAGTT
7671016 ATGTAATTTA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 51 1.00
ACGTcount: A:0.32, C:0.00, G:0.22, T:0.46
Consensus pattern (39 bp):
AGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATG
Found at i:7672823 original size:53 final size:53
Alignment explanation
Indices: 7672760--7672863 Score: 199
Period size: 53 Copynumber: 2.0 Consensus size: 53
7672750 TTAACACTGG
7672760 TTGTCAATAATACACTTTTTTAACAAAAAACGGCAATTTGAATTGAAAAAAAA
1 TTGTCAATAATACACTTTTTTAACAAAAAACGGCAATTTGAATTGAAAAAAAA
*
7672813 TTGTCAATAATACACTTTTTTAACAAAAAATGGCAATTTGAATTGAAAAAA
1 TTGTCAATAATACACTTTTTTAACAAAAAACGGCAATTTGAATTGAAAAAA
7672864 GAAGAAGGAA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 50 1.00
ACGTcount: A:0.48, C:0.11, G:0.10, T:0.32
Consensus pattern (53 bp):
TTGTCAATAATACACTTTTTTAACAAAAAACGGCAATTTGAATTGAAAAAAAA
Found at i:7676851 original size:30 final size:30
Alignment explanation
Indices: 7676815--7676874 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
7676805 TGAAAAATAG
7676815 AAATT-AAAAGACTCAACTCAACTCTCGCAA
1 AAATTAAAAAG-CTCAACTCAACTCTCGCAA
*
7676845 AAATTAAAAAGCTCAACTCACCTCTCGCAA
1 AAATTAAAAAGCTCAACTCAACTCTCGCAA
7676875 TATGAGTTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 23 0.82
31 5 0.18
ACGTcount: A:0.45, C:0.28, G:0.07, T:0.20
Consensus pattern (30 bp):
AAATTAAAAAGCTCAACTCAACTCTCGCAA
Found at i:7677111 original size:79 final size:77
Alignment explanation
Indices: 7676982--7677630 Score: 270
Period size: 79 Copynumber: 8.3 Consensus size: 77
7676972 AAACAGAATC
** * ** * * * * *
7676982 TGAAAAACAGATTTTGAAAATACCTCGACATGTGAGCCGAGGCTCAACTCACATCTCGCAATGTA
1 TGAAAAACAGAAATTGAAAATACCTCAACGCGTGAGCCAAAGCTCAACTCACCTCTCGCAATATG
*
7677047 AGTTAATTTTTT
66 AGTTGATTTTTT
* * * * * *
7677059 TGAAAAATATAAATTGAAAAAATACCTCAATGTGTGATCTAAAGCTCAACTCACCTCTCGCAATA
1 TGAAAAACAGAAATTG--AAAATACCTCAACGCGTGAGCCAAAGCTCAACTCACCTCTCGCAATA
7677124 TGAGTTGATTTTTT
64 TGAGTTGATTTTTT
* * * *
7677138 TGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATG
1 TGAAAAACAGAAATTGAAAATACCTCAACGCGTGAGCCAAAGCTCAACTCACCTCTCGCAATATG
7677203 AGTTGATTTTTTTT
66 AGTTGA--TTTTTT
** * * * *** * * *
7677217 TGAAAGGCAGAAATTGAAAA-ACAGAAATTGAAAATAC-CTTG-GCGTGTGACCTGAGGCTCAAC
1 TGAAAAACAGAAATTGAAAATAC-----CT---CA-ACGCGTGAGC--CAAAGCTCA-ACTC-AC
* * ** *
7677279 TCGCCTCTCACAAT-A--CGAGTTGATTTT
53 -C-TCTCGCAATATGAGTTGA-TT--TTTT
* * * * **
7677306 TTTG-ACAACAGAAATTGAAATTACC-CCA-GCGTG-TCCTGAGACTCAACTCACCTCTCGCAAT
1 --TGAAAAACAGAAATTGAAAATACCTCAACGCGTGAGCCAAAG-CTCAACTCACCTCTCGCAAT
7677367 ATGAGTTGATTTTTT
63 ATGAGTTGATTTTTT
* ***** * ** *
7677382 TGAAAAACAGAAATTGAAAATACCTC-A-GCATGTTTTGAGGCTCAACTCATTTCTCACAATATG
1 TGAAAAACAGAAATTGAAAATACCTCAACGCGTGAGCCAAAGCTCAACTCACCTCTCGCAATATG
7677445 AGTTGATTTTTTTTT
66 AGTTGA---TTTTTT
* ** * * * * *
7677460 TGAAAAATAGAAATTGAAAATACCTCGGCGTGTGA-CCTAAGGCTCAACTCGCCGCTCGCAATAC
1 TGAAAAACAGAAATTGAAAATACCTCAACGCGTGAGCC-AAAGCTCAACTCACCTCTCGCAATAT
7677524 GAGTTGATTTTTT
65 GAGTTGATTTTTT
* * * * * *
7677537 TG-ACAACAGAAATTGAAATTACCTC-A-GTGTG-TCCTGAGGCTCAACTCACCTCTCGCAATAT
1 TGAAAAACAGAAATTGAAAATACCTCAACGCGTGAGCC-AAAGCTCAACTCACCTCTCGCAATAT
**
7677598 GAGTCAATTTTTT
65 GAGTTGATTTTTT
**
7677611 TGAAAGGCAGAAATTGAAAA
1 TGAAAAACAGAAATTGAAAA
7677631 ACGGAAATTG
Statistics
Matches: 431, Mismatches: 101, Indels: 82
0.70 0.16 0.13
Matches are distributed among these distances:
74 45 0.10
75 63 0.15
76 34 0.08
77 70 0.16
78 36 0.08
79 96 0.22
80 32 0.07
81 5 0.01
83 1 0.00
85 2 0.00
86 4 0.01
87 6 0.01
88 5 0.01
89 6 0.01
90 15 0.03
91 11 0.03
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (77 bp):
TGAAAAACAGAAATTGAAAATACCTCAACGCGTGAGCCAAAGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTT
Found at i:7677197 original size:244 final size:245
Alignment explanation
Indices: 7676645--7677630 Score: 903
Period size: 229 Copynumber: 4.1 Consensus size: 245
7676635 AATAGACATT
7676645 AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
** * *
7676710 TTGATTTTTTG-AAACTTAA-CTTGAAAAGCAGATTTTGAAAATACCTCGATATGTGATG--GAG
66 TTGATTTTTTGAAAACAGAATC-TGAAAAACAGATTTTGAAAATACCTCGACATGTGA-GCCGAG
* * *
7676771 GTTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAATAGAAATT-AAAAGACTCAACT
129 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAGAAATTGAAAA-AAT-ACCT
* **
7676833 CAACTCTCGCAAAAAT-TAAAAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTG
192 CAA-TGT-G---TGATCT--AAAGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTTTG
* * * * *
7676894 AAAAAAAAAGAAATTGAAAATAGCTCAGCACGTGAGCTAAGGTTCAACTCACTTCTCGCAATATG
1 --AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATG
*
7676959 AGTT-AATTTTTGAAAACAGAATCTGAAAAACAGATTTTGAAAATACCTCGACATGTGAGCCGAG
64 AGTTGATTTTTTGAAAACAGAATCTGAAAAACAGATTTTGAAAATACCTCGACATGTGAGCCGAG
* * * * *
7677023 GCTCAACTCACATCTCGCAATGTAAGTTAATTTTTTTGAAAAATATAAATTGAAAAAATACCTCA
129 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAGAAATTGAAAAAATACCTCA
7677088 ATGTGTGATCTAAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
194 ATGTGTGATCTAAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
*
7677140 AAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
* ** * * *
7677205 TTGATTTTTTTTTGAAAGGCAGAAAT-TGAAAAACAGAAATTGAAAATACCTTGGCGTGTGA-CC
66 TTGA---TTTTTTGAAA-ACAG-AATCTGAAAAACAGATTTTGAAAATACCTCGACATGTGAGCC
* * * * * *
7677268 TGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTG-ACAACAGAAATTG--AAATTAC
126 -GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAGAAATTGAAAAAATAC
* * *
7677330 C-CCA-GCGTG-TCCT-GAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
190 CTCAATGTGTGAT-CTAAAG-CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
* ** ** ** *
7677384 AAAAACAGAAATTGAAAATACCTCAGCATGTTTTG---AGGCTCAACTCATTTCTCACAATATGA
1 AAAAACAGAAATTGAAAATAGCTCAGCGCG-TGAGCCAAGGCTCAACTCACCTCTCGCAATATGA
* * * ** * * *
7677446 GTTGATTTTTT---------TTTTGAAAAATAGAAATTGAAAATACCTCGGCGTGTGA-CCTAAG
65 GTTGATTTTTTGAAAACAGAATCTGAAAAACAGATTTTGAAAATACCTCGACATGTGAGCC-GAG
* * * * * *
7677501 GCTCAACTCGCCGCTCGCAATACGAGTTGATTTTTTTG-ACAACAGAAATTG--AAATTACCTC-
129 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAGAAATTGAAAAAATACCTCA
* * **
7677562 A-GTGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTTTTG
194 ATGTGTGAT-CTAAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
**
7677613 AAAGGCAGAAATTGAAAA
1 AAAAACAGAAATTGAAAA
7677631 ACGGAAATTG
Statistics
Matches: 644, Mismatches: 70, Indels: 64
0.83 0.09 0.08
Matches are distributed among these distances:
228 1 0.00
229 155 0.24
230 2 0.00
239 6 0.01
242 29 0.05
243 3 0.00
244 130 0.20
245 5 0.01
246 16 0.02
247 32 0.05
248 23 0.04
249 68 0.11
250 11 0.02
251 102 0.16
252 31 0.05
253 6 0.01
254 20 0.03
255 4 0.01
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (245 bp):
AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTGAAAACAGAATCTGAAAAACAGATTTTGAAAATACCTCGACATGTGAGCCGAGGC
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAGAAATTGAAAAAATACCTCAAT
GTGTGATCTAAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
Found at i:7677235 original size:14 final size:14
Alignment explanation
Indices: 7677224--7677250 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7677214 TTTTGAAAGG
7677224 CAGAAATTGAAAAA
1 CAGAAATTGAAAAA
7677238 CAGAAATTGAAAA
1 CAGAAATTGAAAA
7677251 TACCTTGGCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.07, G:0.15, T:0.15
Consensus pattern (14 bp):
CAGAAATTGAAAAA
Found at i:7677247 original size:93 final size:93
Alignment explanation
Indices: 7677137--7677308 Score: 247
Period size: 93 Copynumber: 1.8 Consensus size: 93
7677127 GTTGATTTTT
* * *
7677137 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGA-CCTAAGGCTCAACTCACCTCTCACAATA
*
7677201 TGAGTTGATTTTTTTTTGAAAGGCAGAAA
65 CGAGTTGATTTTTTTTTGAAAGGCAGAAA
** * * *
7677230 TTGAAAAACAGAAATTGAAAATACCTTGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGACCTAAGGCTCAACTCACCTCTCACAATAC
7677295 GAGTTGATTTTTTT
66 GAGTTGATTTTTTT
7677309 GACAACAGAA
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
92 2 0.03
93 67 0.97
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (93 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGACCTAAGGCTCAACTCACCTCTCACAATAC
GAGTTGATTTTTTTTTGAAAGGCAGAAA
Found at i:7677427 original size:75 final size:75
Alignment explanation
Indices: 7677230--7677866 Score: 480
Period size: 75 Copynumber: 8.2 Consensus size: 75
7677220 AAGGCAGAAA
** * * *
7677230 TTGAAAAACAGAAATTGAAAATACCTTGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATAT
7677295 GAGTTGATTTTT
64 GAGTTGATTTTT
* * * *
7677307 TTG-ACAACAGAAATTGAAATTACCCCAGCGTGTCCTGAGACTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
7677371 GTTGATTTTT
66 GTTGATTTTT
* ** ** *
7677381 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTTTTGAGGCTCAACTCATTTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
7677446 GTTGATTTTTTTT
66 GTTGA---TTTTT
* * * * * *
7677459 TTGAAAAATAGAAATTGAAAATACCTCGGCGTGTGACCTAAGGCTCAACTCGCCGCTCGCAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATAT
7677524 GAGTTGATTTTT
64 GAGTTGATTTTT
* * *
7677536 TTG-ACAACAGAAATTGAAATTACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
**
7677600 GTCAATTTTT
66 GTTGATTTTT
** ** *** * * * * *
7677610 TTGAAAGGCAGAAATTGAAAA-A-CGGAAATTGAAATACCTCG-GCGTGTGACCTGAGGCTCAAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTG---T-CCT-GAG-G-CTCAACTCA--C-C-TC
* * * * *
7677672 TCGCCACT-CGCAATACGAGTTGATT
55 TCG-CAATATG-AGT-TGA-TT-TTT
* * * * *
7677697 TTTTTG-ACAACAGAAATTGAAATTCCCCCAGCGTGTCCTGAGACTCAACTCACCTCTCGCAATA
1 TT---GAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
7677761 TGAGTTGATTTTT
63 TGAGTTGATTTTT
* * * *
7677774 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAAACAGAAATTGAAAATACCTCA--GCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATA
7677838 TGAGTTGATTTTT
63 TGAGTTGATTTTT
*
7677851 TTGAAAGACAGAAATT
1 TTGAAAAACAGAAATT
7677867 ACAGAAATTG
Statistics
Matches: 435, Mismatches: 91, Indels: 68
0.73 0.15 0.11
Matches are distributed among these distances:
73 4 0.01
74 80 0.18
75 87 0.20
76 51 0.12
77 76 0.17
78 42 0.10
79 7 0.02
80 32 0.07
81 6 0.01
82 2 0.00
83 6 0.01
84 5 0.01
85 7 0.02
86 3 0.01
87 8 0.02
88 1 0.00
89 13 0.03
90 1 0.00
91 4 0.01
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.29
Consensus pattern (75 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTT
Found at i:7677672 original size:164 final size:165
Alignment explanation
Indices: 7677459--7677794 Score: 566
Period size: 164 Copynumber: 2.0 Consensus size: 165
7677449 GATTTTTTTT
* *
7677459 TTGAAAAATAGAAATTGAAAATACCTCGGCGTGTGACCTAAGGCTCAACTCGCCGCTCGCAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTAAGGCTCAACTCGCCACTCGCAATAC
* * *
7677524 GAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGTGTGTCCTGAGGCTCAACTCACCTC
66 GAGTTGATTTTTTTGACAACAGAAATTGAAATTACCCCAGCGTGTCCTGAGACTCAACTCACCTC
*
7677589 TCGCAATATGAGTCAATTTTTTTGAAAGGCAGAAA
131 TCGCAATATGAGTCAATTTTTTTGAAAGACAGAAA
* *
7677624 TTGAAAAACGGAAATTG-AAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTAAGGCTCAACTCGCCACTCGCAATAC
*
7677688 GAGTTGATTTTTTTGACAACAGAAATTGAAATTCCCCCAGCGTGTCCTGAGACTCAACTCACCTC
66 GAGTTGATTTTTTTGACAACAGAAATTGAAATTACCCCAGCGTGTCCTGAGACTCAACTCACCTC
**
7677753 TCGCAATATGAGTTGATTTTTTTGAAAGACAGAAA
131 TCGCAATATGAGTCAATTTTTTTGAAAGACAGAAA
7677788 TTGAAAA
1 TTGAAAA
7677795 TAGCTCAGCG
Statistics
Matches: 160, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
164 145 0.91
165 15 0.09
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.27
Consensus pattern (165 bp):
TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTAAGGCTCAACTCGCCACTCGCAATAC
GAGTTGATTTTTTTGACAACAGAAATTGAAATTACCCCAGCGTGTCCTGAGACTCAACTCACCTC
TCGCAATATGAGTCAATTTTTTTGAAAGACAGAAA
Found at i:7677698 original size:90 final size:88
Alignment explanation
Indices: 7677545--7677718 Score: 235
Period size: 90 Copynumber: 2.0 Consensus size: 88
7677535 TTTGACAACA
* * *
7677545 GAAATTGAAATTACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTT
1 GAAATTGAAATTACCTCAGTGTGACCTGAGGCTCAACTCACCACTCGCAATACGAGTCAATTTTT
7677610 TTGA-AAGGCAGAAATTGAAAAACG
66 TTGACAA--CAGAAATTGAAAAACG
* * **
7677634 GAAATTGAAA-TACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGATTT
1 GAAATTGAAATTACCTC--AGTGTGACCTGAGGCTCAACTCACCACTCGCAATACGAGTCAATTT
7677698 TTTTGACAACAGAAATTGAAA
64 TTTTGACAACAGAAATTGAAA
7677719 TTCCCCCAGC
Statistics
Matches: 75, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
88 6 0.08
89 22 0.29
90 45 0.60
91 2 0.03
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (88 bp):
GAAATTGAAATTACCTCAGTGTGACCTGAGGCTCAACTCACCACTCGCAATACGAGTCAATTTTT
TTGACAACAGAAATTGAAAAACG
Found at i:7677714 original size:393 final size:397
Alignment explanation
Indices: 7676982--7678290 Score: 1405
Period size: 393 Copynumber: 3.2 Consensus size: 397
7676972 AAACAGAATC
** * * * *
7676982 TGAAAAACAGATTTTGAAAATACCTC-GACATGTGAGCCGAGGCTCAACTCACATCTCGCAATGT
1 TGAAAAACAGAAATTGAAAATACCTCAG-CACGTGAG-C-AGGCTCAACTCACCTCTCACAATAT
* * * * * * *
7677046 AAGTT-A---ATTTTTTTGAAAAATATAAATTGAAAAAATACCTCAATGTGTGATCTAAAGCTCA
63 GAGTTGATTTTTTTTTTTGAAAAATAGAAATTG--AAAATACCTCGACGTGTGACCTAAGGCTCA
* * *
7677107 ACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTG
126 ACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAATACCTCA--GCGTG
*
7677172 AGCC-AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAA
188 A-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAA
* *
7677236 AACAGAAATTGAAAATACCTTGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTG
252 AACGGAAATTGAAAATACCTTGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTG
7677301 ATTTTTTTGACAACAGAAATTGAAATTACCCCAGCGTGTCCTGAGACTCAACTCACCTCTCGCAA
317 ATTTTTTTGACAACAGAAATTGAAATTACCCCAGCGTGTCCTGAGACTCAACTCACCTCTCGCAA
7677366 TATGAGTTGATTTTTT
382 TATGAGTTGATTTTTT
* ** **
7677382 TGAAAAACAGAAATTGAAAATACCTCAGCATGTTTTG-AGGCTCAACTCATTTCTCACAATATGA
1 TGAAAAACAGAAATTGAAAATACCTCAGCACG-TGAGCAGGCTCAACTCACCTCTCACAATATGA
*
7677446 GTTGA-TTTTTTTTTTGAAAAATAGAAATTGAAAATACCTCGGCGTGTGACCTAAGGCTCAACTC
65 GTTGATTTTTTTTTTTGAAAAATAGAAATTGAAAATACCTCGACGTGTGACCTAAGGCTCAACTC
* * * * *
7677510 GCCGCTCGCAATACGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGTGTGTCCTGAG
130 GCCTCTCGCAATACGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAG
* *
7677575 GCTCAACTCACCTCTCGCAATATGAG-TCA-ATTTTTTTGAAAGGCAGAAATTGAAAAACGGAAA
195 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAA
* *
7677638 TTG-AAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGATTTTTTT
260 TTGAAAATACCTTGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTT
*
7677702 GACAACAGAAATTGAAATTCCCCCAGCGTGTCCTGAGACTCAACTCACCTCTCGCAATATGAGTT
325 GACAACAGAAATTGAAATTACCCCAGCGTGTCCTGAGACTCAACTCACCTCTCGCAATATGAGTT
7677767 GATTTTTT
390 GATTTTTT
* * * *
7677775 TGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATG
1 TGAAAAACAGAAATTGAAAATACCTCAGCACGTGAG-C-AGGCTCAACTCACCTCTCACAATATG
** *
7677840 AGTTGATTTTTTTGAAAGACAGAAATTACAGAAATTGAAAAACGGAAATTGAAAATACCTTGACG
64 AGTTGATTTTTTT------------TT-------TTGAAAAATAGAAATTGAAAATACCTCGACG
*
7677905 TGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTCTTTCAAAAACATAATAATGAA
110 TGTGACCTAAGGCTCAACTCGCCTCTCGCAATACGAGTTGA-T-TTT--------T--T--TGAA
*
7677970 AACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
161 AACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* *
7678035 TTTTTTTTGAAAGACAGAAATTGAAAAACGGAAATTGAAAATACCTTGACGTGTGACCTGAGGCT
226 TTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTTGGCGTGTGACCTGAGGCT
*
7678100 CAACTCGCCTCTCGCAATACGAGTTGATTCTTTCAAAAACATAATAATGA-AGACAGAAATTGAG
291 CAACTCGCCTCTCGCAATACGAGTTGA-T-TTT--------T--T--TGACA-ACAGAAATTGAA
* * * **
7678164 ATTACCTCATCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---AAT
341 ATTACCCCAGCGTGTCCTGAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* * **
7678218 T-AAAACACAAAAATTGAAAATACCACAG--CGTGCCCCGAGGCTCAACTCACCTCT-AGCAATA
1 TGAAAA-ACAGAAATTGAAAATACCTCAGCACGTG-AGC-AGGCTCAACTCACCTCTCA-CAATA
7678279 TGAGTTGATTTT
62 TGAGTTGATTTT
7678291 GAAAAATAAA
Statistics
Matches: 772, Mismatches: 73, Indels: 87
0.83 0.08 0.09
Matches are distributed among these distances:
392 2 0.00
393 158 0.20
394 35 0.05
395 33 0.04
396 38 0.05
398 44 0.06
399 58 0.08
400 28 0.04
401 24 0.03
408 2 0.00
415 66 0.09
416 1 0.00
417 3 0.00
425 1 0.00
427 1 0.00
429 59 0.08
430 2 0.00
431 35 0.05
432 51 0.07
433 1 0.00
434 3 0.00
441 39 0.05
442 4 0.01
443 21 0.03
444 1 0.00
445 1 0.00
446 61 0.08
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (397 bp):
TGAAAAACAGAAATTGAAAATACCTCAGCACGTGAGCAGGCTCAACTCACCTCTCACAATATGAG
TTGATTTTTTTTTTTGAAAAATAGAAATTGAAAATACCTCGACGTGTGACCTAAGGCTCAACTCG
CCTCTCGCAATACGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGG
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAAT
TGAAAATACCTTGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTG
ACAACAGAAATTGAAATTACCCCAGCGTGTCCTGAGACTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTT
Found at i:7678031 original size:88 final size:89
Alignment explanation
Indices: 7677878--7678214 Score: 419
Period size: 88 Copynumber: 3.8 Consensus size: 89
7677868 CAGAAATTGA
* * * *
7677878 AAAACGGAAATTGAAAATACCTTGACGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGT
1 AAAACAGAAATTGAAAATACCTCGA-GCGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGT
7677943 TGATTCTTTCAAAAACATAATAATG
65 TGATTCTTTCAAAAACATAATAATG
*
7677968 AAAACAGAAATTGAAAATACCTCG-GCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAACAGAAATTGAAAATACCTCGAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTT
* * * * *
7678032 GATTTTTTTTTGAAAGACAGAA-ATTG
66 GA---TTCTTTCAAAAACATAATAATG
* * * *
7678058 AAAAACGGAAATTGAAAATACCTTGACGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAG
1 -AAAACAGAAATTGAAAATACCTCGA-GCGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAG
7678123 TTGATTCTTTCAAAAACATAATAATG
64 TTGATTCTTTCAAAAACATAATAATG
* * * * * *
7678149 AAGACAGAAATTGAGATTACCTC-ATCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAACAGAAATTGAAAATACCTCGAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTT
7678213 GA
66 GA
7678215 AATTAAAACA
Statistics
Matches: 210, Mismatches: 30, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
88 76 0.36
89 1 0.00
90 56 0.27
91 38 0.18
93 39 0.19
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.26
Consensus pattern (89 bp):
AAAACAGAAATTGAAAATACCTCGAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTT
GATTCTTTCAAAAACATAATAATG
Found at i:7678060 original size:14 final size:14
Alignment explanation
Indices: 7678041--7678075 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
7678031 TGATTTTTTT
*
7678041 TTGAAAGACAGAAA
1 TTGAAAAACAGAAA
*
7678055 TTGAAAAACGGAAA
1 TTGAAAAACAGAAA
7678069 TTGAAAA
1 TTGAAAA
7678076 TACCTTGACG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.57, C:0.06, G:0.20, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:7678086 original size:181 final size:183
Alignment explanation
Indices: 7677775--7679738 Score: 1380
Period size: 176 Copynumber: 10.8 Consensus size: 183
7677765 TTGATTTTTT
* *
7677775 TGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATAT
1 TGAAA-ACAGAAATTGAAAATACCTC-G-GCGTGA-CCTGAGGCTCAACTCACCTCTCGCAATAT
*
7677839 GAGTTGATTTTTTTGAAAGACAGAAATTACAGAAATTGAAAAACGGAAATTGAAAATACCTTGAC
62 GAGTTGATTTTTTT-----ACAGAAATGACAGAAATTGAAAAACGGAAATTGAAAATACCTTGAC
7677904 GTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTCTTTCAAAAACATAATAA
122 GTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTCTTTCAAAAACATAATAA
7677966 TGAAAACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 TGAAAACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
**
7678031 TGATTTTTTT-TTGAAA-GACAGAAATTGAAAAACGGAAATTGAAAATACCTTGACGTGTGACCT
66 TGATTTTTTTACAGAAATGACAGAAATTGAAAAACGGAAATTGAAAATACCTTGACGTGTGACCT
7678094 GAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTCTTTCAAAAACATAATAA
131 GAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTCTTTCAAAAACATAATAA
* * * ** *
7678147 TGAAGACAGAAATTGAGATTACCTCATCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 TGAAAACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
** * * * * * *** * *
7678212 TGA---AATT--A-AAA-CACAAAAATTGAAAATAC-CACAGCGTGCCCCGAGGCTCAAC-TCAC
66 TGATTTTTTTACAGAAATGACAGAAATTGAAAA-ACGGA-A--AT----TGAAAAT-ACCTTGAC
* * ** * * ** * **** *** ** * **
7678268 CTCTAGCAATATGA-GTTGATTTTGAAAAATAAAAATTAAAAGGCTTAACTCACCTCTCGCAATA
122 GTGT-G--ACCTGAGGCTCAACTCG-CCTCTCGCAA-TACGA-G-TTGA-T----TCTTTCAA-A
* ** * **
7678332 TGAGTTGATTCT
174 -AACAT-AATAA
* * ** * *
7678344 TGACAAACAGAAATTGAGATTACCTCATCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAG
1 TGA-AAACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* * * * *
7678409 TTGA--TTTTGA-A-AAAT-A-A-AAATT--AAAA-GG--CTT--AACTCACCTCTCG-CAATAT
65 TTGATTTTTTTACAGAAATGACAGAAATTGAAAAACGGAAATTGAAAAT-ACCT-T-GAC-GTGT
* *** * * * * ** * ** * * * * ** *
7678459 GAGTCAAACTAAAAAT-ACCTCAGCGTGC-CCCGAGGCTCAACTCACTTATTGCAATATGAGTTG
126 GA--C---CTGAGGCTCAACTC-GCCT-CTCGCAATAC-GAGTTGA-TTCTTTCAA-A-AACATA
**
7678522 ATTT
180 ATAA
* ** * * * *
7678526 TGAAAACA-ACAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTATCGCAATATGAG
1 TGAAAACAGA-AATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
** * * *
7678590 TTGATTTTTTT---TTAA-GGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACC
65 TTGATTTTTTTACAGAAATGACAGAAATTGAAAAACGGAAATTGAAAATACCTTGACGTGTGACC
7678651 TGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTCTTTCAAAAACATAATAA
130 TGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTCTTTCAAAAACATAATAA
* *
7678705 TGAAAACAAAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGC
1 TGAAAACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*** * * *
7678770 TGATTTTTTTTTTGAAA-GACAGAAATTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACCT
66 TGATTTTTTTACAGAAATGACAGAAATTGAAAAACGGAAATTGAAAATACCTTGACGTGTGACCT
7678834 GAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTCTTTCAAAAACATAATAA
131 GAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTCTTTCAAAAACATAATAA
* *
7678887 TGAAAACAAAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGC
1 TGAAAACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * * * * *
7678952 TGA-TTCTTT-CA-AAA--ACATAATAATG-AAGACAGAAATTGAAAATACATTG--GCGTGACC
66 TGATTTTTTTACAGAAATGACAGAA-ATTGAAAAACGGAAATTGAAAATACCTTGACGTGTGACC
* * *
7679009 TGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTCTTTCAAAAACATAATAA
130 TGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTCTTTCAAAAACATAATAA
* * * *
7679063 TGAAGACAGAAATTGAAAATACATTGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGC
1 TGAAAACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * * * * *
7679128 TGA-TTCTTT-CA-AAA--ACATAATAATG-AAGACAGAAATTGAAAATACATTG--GCGTGACC
66 TGATTTTTTTACAGAAATGACAGAA-ATTGAAAAACGGAAATTGAAAATACCTTGACGTGTGACC
* * *
7679185 TGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTCTTTCAAAAACATAATAA
130 TGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTCTTTCAAAAACATAATAA
* * * *
7679239 TGAAGACAGAAATTGAAAATACATTGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGC
1 TGAAAACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * * * * *
7679304 TGA-TTCTTT-CA-AAA--ACATAATAATG-AAGACAGAAATTGAAAATACATTG--GCGTGACC
66 TGATTTTTTTACAGAAATGACAGAA-ATTGAAAAACGGAAATTGAAAATACCTTGACGTGTGACC
* * *
7679361 TGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTCTTTCAAAAACATAATAA
130 TGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTCTTTCAAAAACATAATAA
* * * *
7679415 TGAAGACAGAAATTGAAAATACATTGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGC
1 TGAAAACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * * * * *
7679480 TGA-TTCTTT-CA-AAA--ACATAATAATG-AAGACAGAAATTGAAAATACATTG--GCGTGACC
66 TGATTTTTTTACAGAAATGACAGAA-ATTGAAAAACGGAAATTGAAAATACCTTGACGTGTGACC
* * *
7679537 TGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTCTTTCAAAAACATAATAA
130 TGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTCTTTCAAAAACATAATAA
* * * *
7679591 TGAAGACAGAAATTGAAAATACATTGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGC
1 TGAAAACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * * * * *
7679656 TGA-TTCTTT-CA-AAA--ACATAATAATG-AAGACAGAAATTGAAAATACATTG--GCGTGACC
66 TGATTTTTTTACAGAAATGACAGAA-ATTGAAAAACGGAAATTGAAAATACCTTGACGTGTGACC
*
7679713 TGAGGCTCAACTCACCTCTCGCAATA
130 TGAGGCTCAACTCGCCTCTCGCAATA
7679739 TGAGCTGCTT
Statistics
Matches: 1549, Mismatches: 159, Indels: 145
0.84 0.09 0.08
Matches are distributed among these distances:
176 747 0.48
177 3 0.00
178 28 0.02
179 76 0.05
180 3 0.00
181 228 0.15
182 183 0.12
183 38 0.02
184 18 0.01
185 5 0.00
186 15 0.01
187 13 0.01
188 51 0.03
189 13 0.01
190 27 0.02
191 8 0.01
194 6 0.00
195 2 0.00
196 5 0.00
197 5 0.00
198 68 0.04
199 2 0.00
200 5 0.00
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.26
Consensus pattern (183 bp):
TGAAAACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTTACAGAAATGACAGAAATTGAAAAACGGAAATTGAAAATACCTTGACGTGTGACCT
GAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTCTTTCAAAAACATAATAA
Found at i:7678407 original size:126 final size:125
Alignment explanation
Indices: 7678183--7678462 Score: 436
Period size: 126 Copynumber: 2.2 Consensus size: 125
7678173 TCGTGTCCTG
*
7678183 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCACAGCG
1 AGGCTTAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCACAGCG
7678248 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAATAAAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAATAAAAATTAAA
** * * * * * *
7678308 AGGCTTAACTCACCTCTCGCAATATGAGTTGATTCTTGACAA-ACAGAAATTGAGATTACCTCAT
1 AGGCTTAACTCACCTCTCGCAATATGAGTTGA-AATT-AAAACACAAAAATTGAAAATACCACAG
* *
7678372 CGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAATAAAAATTAAA
64 CGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAATAAAAATTAAA
7678434 AGGCTTAACTCACCTCTCGCAATATGAGT
1 AGGCTTAACTCACCTCTCGCAATATGAGT
7678463 CAAACTAAAA
Statistics
Matches: 142, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
125 31 0.22
126 108 0.76
127 3 0.02
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.26
Consensus pattern (125 bp):
AGGCTTAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCACAGCG
TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAATAAAAATTAAA
Found at i:7678760 original size:88 final size:88
Alignment explanation
Indices: 7678623--7679745 Score: 1942
Period size: 88 Copynumber: 12.7 Consensus size: 88
7678613 TTGAAAAACG
* * * * *
7678623 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTC
1 GAAATTGAAAATACATTGGC--GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTC
*
7678688 TTTCAAAAACATAATAATGAAAACA
64 TTTCAAAAACATAATAATGAAGACA
* * *
7678713 AAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTT
1 GAAATTGAAAATACATTGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA----T
* * * * * *
7678778 TTTTTGAAAGACAGAA-ATTGAAAAACA
62 TCTTTCAAAAACATAATAATG-AAGACA
* * * * *
7678805 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTC
1 GAAATTGAAAATACATTGGC--GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTC
*
7678870 TTTCAAAAACATAATAATGAAAACA
64 TTTCAAAAACATAATAATGAAGACA
* * *
7678895 AAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTCTT
1 GAAATTGAAAATACATTGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTCTT
7678960 TCAAAAACATAATAATGAAGACA
66 TCAAAAACATAATAATGAAGACA
7678983 GAAATTGAAAATACATTGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTCTT
1 GAAATTGAAAATACATTGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTCTT
7679048 TCAAAAACATAATAATGAAGACA
66 TCAAAAACATAATAATGAAGACA
7679071 GAAATTGAAAATACATTGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTCTT
1 GAAATTGAAAATACATTGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTCTT
7679136 TCAAAAACATAATAATGAAGACA
66 TCAAAAACATAATAATGAAGACA
7679159 GAAATTGAAAATACATTGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTCTT
1 GAAATTGAAAATACATTGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTCTT
7679224 TCAAAAACATAATAATGAAGACA
66 TCAAAAACATAATAATGAAGACA
7679247 GAAATTGAAAATACATTGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTCTT
1 GAAATTGAAAATACATTGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTCTT
7679312 TCAAAAACATAATAATGAAGACA
66 TCAAAAACATAATAATGAAGACA
7679335 GAAATTGAAAATACATTGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTCTT
1 GAAATTGAAAATACATTGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTCTT
7679400 TCAAAAACATAATAATGAAGACA
66 TCAAAAACATAATAATGAAGACA
7679423 GAAATTGAAAATACATTGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTCTT
1 GAAATTGAAAATACATTGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTCTT
7679488 TCAAAAACATAATAATGAAGACA
66 TCAAAAACATAATAATGAAGACA
7679511 GAAATTGAAAATACATTGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTCTT
1 GAAATTGAAAATACATTGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTCTT
7679576 TCAAAAACATAATAATGAAGACA
66 TCAAAAACATAATAATGAAGACA
7679599 GAAATTGAAAATACATTGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTCTT
1 GAAATTGAAAATACATTGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTCTT
7679664 TCAAAAACATAATAATGAAGACA
66 TCAAAAACATAATAATGAAGACA
7679687 GAAATTGAAAATACATTGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
1 GAAATTGAAAATACATTGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
7679746 CTTTTGAAAA
Statistics
Matches: 999, Mismatches: 26, Indels: 18
0.96 0.02 0.02
Matches are distributed among these distances:
88 861 0.86
90 57 0.06
91 6 0.01
92 38 0.04
94 37 0.04
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (88 bp):
GAAATTGAAAATACATTGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTCTT
TCAAAAACATAATAATGAAGACA
Found at i:7678800 original size:14 final size:14
Alignment explanation
Indices: 7678781--7678815 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
7678771 GATTTTTTTT
*
7678781 TTGAAAGACAGAAA
1 TTGAAAAACAGAAA
7678795 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
7678809 TTGAAAA
1 TTGAAAA
7678816 TACCTCGGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.60, C:0.06, G:0.17, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:7679922 original size:72 final size:72
Alignment explanation
Indices: 7679773--7679967 Score: 232
Period size: 72 Copynumber: 2.7 Consensus size: 72
7679763 ATTAAAAGGT
* * * * * * * * *
7679773 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAAAAATTGAGATTACCTCATCGTGT
1 TCAACTCACCTCTAGCAATATGAGTTGA-TATTGAAAAACAAAAATTGAAAATACCTCAGCATGC
* *
7679838 CCTGTGGC
65 CCCGAGGC
* *
7679846 TCAACTCACCTCTTGCAATATGAGTTGAAATT-AAAACACAAAAATTGAAAATACCTCAGCATGC
1 TCAACTCACCTCTAGCAATATGAGTTGATATTGAAAA-ACAAAAATTGAAAATACCTCAGCATGC
7679910 CCCGAGGC
65 CCCGAGGC
*
7679918 TCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATT-AAAA
1 TCAACTCACCTCTAGCAATATGAGTTGATATTGAAAAACAAAAATTGAAAA
7679968 GGCTTAACTC
Statistics
Matches: 105, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
71 7 0.07
72 68 0.65
73 30 0.29
ACGTcount: A:0.37, C:0.23, G:0.14, T:0.26
Consensus pattern (72 bp):
TCAACTCACCTCTAGCAATATGAGTTGATATTGAAAAACAAAAATTGAAAATACCTCAGCATGCC
CCGAGGC
Found at i:7688507 original size:12 final size:12
Alignment explanation
Indices: 7688487--7688522 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
7688477 TCGGATATGC
*
7688487 AATGTATGAATG
1 AATGCATGAATG
7688499 AATGCATGAATG
1 AATGCATGAATG
7688511 AATGCATGAATG
1 AATGCATGAATG
7688523 TCAAATGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:7690368 original size:30 final size:30
Alignment explanation
Indices: 7690332--7690430 Score: 180
Period size: 30 Copynumber: 3.3 Consensus size: 30
7690322 NNNNNNNNNN
*
7690332 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
1 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGT
7690362 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGT
1 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGT
*
7690392 GTGGCTAGTGGAGTTGGTGGTGGAAAAAGT
1 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGT
7690422 GTGGCTAGT
1 GTGGCTAGT
7690431 TGAGAAAAGT
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 67 1.00
ACGTcount: A:0.21, C:0.04, G:0.48, T:0.26
Consensus pattern (30 bp):
GTGGCTAGTGGAGTTGGTGGTGGAAAAGGT
Found at i:7692827 original size:48 final size:47
Alignment explanation
Indices: 7692725--7693135 Score: 273
Period size: 46 Copynumber: 8.7 Consensus size: 47
7692715 TTATTTGTGT
7692725 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATT-ATGA-A-A
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG---CATTGA-GAGAGA
* *
7692771 GCCAGTGTAAGACCATGTCTGTGACATGGCATCGGCATTGAGACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA-GAGA
* * * *
7692819 GCTAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGAGATGTA-C
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA-G-AGA
* * *
7692865 GCCAGTGTAAGA-CATGTCTGAGACAT-GCATCGGC--T-ACGAGATGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-GAGA-GA
* *
7692909 G-TCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA-TGTATAGAGGT
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTG-AGAGA-GA
* * ** *
7692957 GTTAGTGTAAGACCATGTCTGGGACATAGCATCGGCACAGATATGTGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTG--A-GAGAGA
* * * * * ** *
7693007 GCTAGTGTAAGACCATGTTTAGGACATGGCGTCGGCCTCGATTTCGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA--GAGAGA
* *
7693056 G-TCAGTGGAAGACCATGTCTGGGACATGGCATCGAC-TTGATG-GATGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-GAGA-GA
*
7693103 GCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC
7693136 AGTATTATAC
Statistics
Matches: 297, Mismatches: 44, Indels: 47
0.77 0.11 0.12
Matches are distributed among these distances:
42 1 0.00
43 2 0.01
44 12 0.04
45 19 0.06
46 67 0.23
47 60 0.20
48 63 0.21
49 36 0.12
50 35 0.12
51 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAGAGA
Found at i:7695888 original size:28 final size:27
Alignment explanation
Indices: 7695836--7695895 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 27
7695826 TCGATGTCTC
* * *
7695836 GCACACTAAGTGTCATACTCCATATCTT
1 GCACACCAAGTGCCATACTCAATAT-TT
*
7695864 GCACACCAAGTGCCATTCTCAATATTT
1 GCACACCAAGTGCCATACTCAATATTT
7695891 -CACAC
1 GCACAC
7695896 ACTAAATGCC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.30, C:0.32, G:0.10, T:0.28
Consensus pattern (27 bp):
GCACACCAAGTGCCATACTCAATATTT
Found at i:7695910 original size:2 final size:2
Alignment explanation
Indices: 7695905--7695950 Score: 74
Period size: 2 Copynumber: 23.0 Consensus size: 2
7695895 CACTAAATGC
* *
7695905 CA CA CA CA CA CA CA CG CA TA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
7695947 CA CA
1 CA CA
7695951 TATATATATA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.48, C:0.48, G:0.02, T:0.02
Consensus pattern (2 bp):
CA
Found at i:7695919 original size:22 final size:22
Alignment explanation
Indices: 7695891--7695942 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
7695881 CTCAATATTT
*
7695891 CACACACTAAATGC-CACACACA
1 CACACAC-AAATACACACACACA
**
7695913 CACACACGCATACACACACACA
1 CACACACAAATACACACACACA
7695935 CACACACA
1 CACACACA
7695943 CACACACATA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 3 0.12
22 22 0.88
ACGTcount: A:0.46, C:0.44, G:0.04, T:0.06
Consensus pattern (22 bp):
CACACACAAATACACACACACA
Found at i:7696003 original size:40 final size:40
Alignment explanation
Indices: 7695959--7696043 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
7695949 CATATATATA
*
7695959 TAGCCGAAGCTATCTT-AAATCACACACCAAGTGCCACATT
1 TAGCCGAAGCTAT-TTCAAACCACACACCAAGTGCCACATT
* * **
7695999 TAGCCGAAGCTATTTCAAACCGCACACTAAGTGCCATTTT
1 TAGCCGAAGCTATTTCAAACCACACACCAAGTGCCACATT
7696039 TAGCC
1 TAGCC
7696044 AATATGTCGT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.05
40 37 0.95
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (40 bp):
TAGCCGAAGCTATTTCAAACCACACACCAAGTGCCACATT
Found at i:7696423 original size:26 final size:26
Alignment explanation
Indices: 7696373--7696423 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
7696363 AAATTTAATC
*
7696373 AATTTCATCATAGCCCAAACTAGCCA
1 AATTTCATCATAGCACAAACTAGCCA
7696399 AATTTCAT-ATATGCACATAAC-AGCC
1 AATTTCATCATA-GCACA-AACTAGCC
7696424 CATATTTTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
25 3 0.14
26 16 0.73
27 3 0.14
ACGTcount: A:0.39, C:0.27, G:0.08, T:0.25
Consensus pattern (26 bp):
AATTTCATCATAGCACAAACTAGCCA
Found at i:7705545 original size:31 final size:31
Alignment explanation
Indices: 7705509--7705579 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 31
7705499 GAAAAGCTTG
*
7705509 AAGTTCAGGCCCCAATATGAAAATAATTA-CC
1 AAGTTCAGGCCCCAATATGAAAACAA-TAGCC
* * *
7705540 AAGTTCATGCCCTAATATGAAAACAATAGCT
1 AAGTTCAGGCCCCAATATGAAAACAATAGCC
7705571 AAGTTCAGG
1 AAGTTCAGG
7705580 GATGAACTTG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
30 2 0.06
31 32 0.94
ACGTcount: A:0.41, C:0.20, G:0.15, T:0.24
Consensus pattern (31 bp):
AAGTTCAGGCCCCAATATGAAAACAATAGCC
Found at i:7715477 original size:101 final size:100
Alignment explanation
Indices: 7715312--7715800 Score: 441
Period size: 101 Copynumber: 4.9 Consensus size: 100
7715302 TAAGATGGTT
* * * ** *
7715312 TTAGATCACGTGTGTAGTACTAAGTGCAGGTTTCTACGTGTACCAAATAGTTAGGTTGCATGTGT
1 TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACGTGTGT
* *
7715377 AGTATTAAATGCAGGCTACTATGCATACCTGACAAC
66 AGTACTAAGTGCAGGCTACTATGCATACCTGA-AAC
* * * *
7715413 TTCA-ATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTTACGTCACGTGTG
1 TT-AGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACGTGTG
* ** * * *
7715477 TAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
65 TAGTACTAAGTGCAGGCTACTATGCATACCTGAAAC
* ** * * * * * * *
7715513 TTAGGTTGCATATGTAGTACTAAGTGCAGGCTACTATGCGTACCCGGCA-ACTTCA-ATCACGTG
1 TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAG-ATAGTT-AGGTCACGTG
* * * ***
7715576 TGTAGTACTAAGTGCAAGCTACTACGTGTAT-CAT-ATGG
63 TGTAGTACTAAGTGCAGGCTACTA--TGCATACCTGAAAC
* * * * *
7715614 TTAGGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAGTTAGGTCGCATGTGT
1 TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACGTGTGT
* * *
7715679 AATACTAAGTGCAGGCTACTATGCGTACCCGACAAC
66 AGTACTAAGTGCAGGCTACTATGCATACCTGA-AAC
* * *
7715715 TTCA-ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATATCAGATGGTTAGGTCACGTGTG
1 TT-AGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACGTGTG
*
7715779 TAGTACTAAGTGCAAGCTACTA
65 TAGTACTAAGTGCAGGCTACTA
7715801 CGTGTATTGG
Statistics
Matches: 306, Mismatches: 69, Indels: 26
0.76 0.17 0.06
Matches are distributed among these distances:
98 3 0.01
99 4 0.01
100 66 0.22
101 225 0.74
102 5 0.02
103 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.30
Consensus pattern (100 bp):
TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACGTGTGT
AGTACTAAGTGCAGGCTACTATGCATACCTGAAAC
Found at i:7715482 original size:50 final size:50
Alignment explanation
Indices: 7715270--7715863 Score: 496
Period size: 50 Copynumber: 11.8 Consensus size: 50
7715260 TTAGAACACA
* * * *** * *
7715270 TGTGTAGTACTATGTACAGGCTACTATGTGTTTAAGATGGTTTTAGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG--TTAGGTCACG
* * * ** *
7715322 TGTGTAGTACTAAGTGCAGGTTTCTACGTGTACCAAATAGTTAGGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACG
* * * ** * * * *
7715372 TGTGTAGTATTAAATGCAGGCTACTATGCATACCTGACAACTTCA-ATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAGTT-AGGTCACG
* * * *
7715423 TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTTACGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACG
** *
7715473 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACG
* * * * * *
7715523 TATGTAGTACTAAGTGCAGGCTACTATGCGTACCCGGCA-ACTTCA-ATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAG-ATAGTT-AGGTCACG
* * * * *
7715574 TGTGTAGTACTAAGTGCAAGCTACTACGTGTATCATATGGTTAGGTCATG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACG
* * *
7715624 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAGTTAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACG
* * * * * * *
7715674 TGTGTAATACTAAGTGCAGGCTACTATGCGTACCCGACAACTTCA-ATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAGTT-AGGTCACG
* * *
7715725 TGTGTAGTACTAAGTGCAGGCTACTACGTATATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACG
* *** * * *
7715775 TGTGTAGTACTAAGTGCAAGCTACTACGTGTATTGGATTGTT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACG
* * *
7715824 TGTGTAGTACCAAGTGCAGGCTACTATGCGTACCAGATAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
7715864 CTTCGGTTAC
Statistics
Matches: 421, Mismatches: 110, Indels: 25
0.76 0.20 0.04
Matches are distributed among these distances:
49 41 0.10
50 239 0.57
51 107 0.25
52 34 0.08
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACG
Found at i:7715546 original size:151 final size:151
Alignment explanation
Indices: 7715270--7715857 Score: 872
Period size: 151 Copynumber: 3.9 Consensus size: 151
7715260 TTAGAACACA
* * * * * *
7715270 TGTGTAGTACTATGTACAGGCTACTATGTGTTTAAGATGGTTTTAGATCACGTGTGTAGTACTAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG--TTAGGTCACGTGTGTAGTACTAA
* * * * *
7715335 GTGCAGGTTTCTACGTGTACCAAATAGTTAGGTTGCATGTGTAGTATTAAATGCAGGCTACTATG
64 GTGCAGGCTACTACGTGTACCAAATAGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATG
* *
7715400 CATACCTGACAACTTCAATCACG
129 CGTACCCGACAACTTCAATCACG
* *
7715423 TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTTACGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
* * *
7715488 GCAGGCTACTACGTGTACCAGATAGTTAGGTTGCATATGTAGTACTAAGTGCAGGCTACTATGCG
66 GCAGGCTACTACGTGTACCAAATAGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCG
*
7715553 TACCCGGCAACTTCAATCACG
131 TACCCGACAACTTCAATCACG
* * *
7715574 TGTGTAGTACTAAGTGCAAGCTACTACGTGTATCATATGGTTAGGTCATGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
*
7715639 GCAGGCTACTACGTGTACCAAATAGTTAGGTCGCATGTGTAATACTAAGTGCAGGCTACTATGCG
66 GCAGGCTACTACGTGTACCAAATAGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCG
7715704 TACCCGACAACTTCAATCACG
131 TACCCGACAACTTCAATCACG
*
7715725 TGTGTAGTACTAAGTGCAGGCTACTACGTATATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
* **** * *
7715790 GCAAGCTACTACGTGTATTGGATTGTT-GGTCGCATGTGTAGTACCAAGTGCAGGCTACTATGCG
66 GCAGGCTACTACGTGTACCAAATAGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCG
7715854 TACC
131 TACC
7715858 AGATAGCTTC
Statistics
Matches: 396, Mismatches: 39, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
150 39 0.10
151 323 0.82
153 34 0.09
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.31
Consensus pattern (151 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
GCAGGCTACTACGTGTACCAAATAGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCG
TACCCGACAACTTCAATCACG
Found at i:7716082 original size:16 final size:15
Alignment explanation
Indices: 7716061--7716090 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
7716051 GAATGGAGTA
7716061 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
7716077 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
7716091 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:7722553 original size:46 final size:45
Alignment explanation
Indices: 7722501--7722664 Score: 161
Period size: 46 Copynumber: 3.5 Consensus size: 45
7722491 GTAGCCGATG
* *
7722501 CATGTCCCAGACATGTCTTATACTGGCTTACGTCCCGTGGCTGATA
1 CATGTCCCAGACATGTCTTACACTGGCTT-CGTCCAGTGGCTGATA
* * * * *
7722547 CATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGTC-GATGC
1 CATGTCCCAGACATGTCTTACACTGGC-TTCGTC-CAGTGGCTGAT-A
* * *
7722594 CATGTCCCAGACATGGTCTTACACTGGCTCTCAT-AATGTGGCTGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCT-TCGTCCA-GTGGCTGATA
7722641 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
7722665 AGCTCACACA
Statistics
Matches: 97, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
46 43 0.44
47 36 0.37
48 18 0.19
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGGCTTCGTCCAGTGGCTGATA
Found at i:7722635 original size:94 final size:92
Alignment explanation
Indices: 7722496--7722667 Score: 256
Period size: 94 Copynumber: 1.8 Consensus size: 92
7722486 ATCTCGTAGC
* * **
7722496 CGATGCATGTCCCAGACATGTCTTATACTGGCTTACGTCCCGTGGCTGATACATGTCCCAGACAT
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACATAACGTGGCTGATACATGTCCCAGACAT
7722561 GTCTTACACTAGCACTCGTCTCAATGT
66 GTCTTACACTAGCACTCGTCTCAATGT
* *
7722588 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAATGTGGCTGATGCATGTCCCAGA
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACATAACGTGGCTGATACATGTCCCAGA
7722652 CATGTCTTACACTAGC
63 CATGTCTTACACTAGC
7722668 TCACACAAAT
Statistics
Matches: 71, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
92 5 0.07
93 14 0.20
94 51 0.72
95 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.28
Consensus pattern (92 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTTACATAACGTGGCTGATACATGTCCCAGACAT
GTCTTACACTAGCACTCGTCTCAATGT
Found at i:7725774 original size:20 final size:20
Alignment explanation
Indices: 7725749--7725787 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
7725739 TCCCACTAGT
7725749 TTTGAACATTTTTA-TATATA
1 TTTGAA-ATTTTTACTATATA
*
7725769 TTTGAATTTTTTACTATAT
1 TTTGAAATTTTTACTATAT
7725788 TTTTATTTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (20 bp):
TTTGAAATTTTTACTATATA
Found at i:7727510 original size:41 final size:41
Alignment explanation
Indices: 7727465--7727647 Score: 201
Period size: 41 Copynumber: 4.5 Consensus size: 41
7727455 TCAGTGATAT
* *
7727465 TCAGGCTT-TATGCCTAGTAGGCTTTATGCCGGTGAATTATA
1 TCAGGCTTAT-TGCCTAGCAGGCTTTATGCCGGTGTATTATA
* *
7727506 TCAGGCTTATTGCCTAGCAGGCTTTATGCTGGTGTATTATT
1 TCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATA
* * *
7727547 TCAAGCTTATTGCCTAGAAGGCTTTATGCCGGTGTATTATT
1 TCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATA
* * * * * *
7727588 TCAGGCCTATTGCCTAACAGGCTCTGTGCCAGTGTATTGTA
1 TCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATA
7727629 -CTAGGCTT-TATGCCTAGCA
1 TC-AGGCTTAT-TGCCTAGCA
7727648 AATTTTATGT
Statistics
Matches: 121, Mismatches: 18, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
40 2 0.02
41 118 0.98
42 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (41 bp):
TCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATA
Found at i:7727643 original size:82 final size:82
Alignment explanation
Indices: 7727465--7727645 Score: 222
Period size: 82 Copynumber: 2.2 Consensus size: 82
7727455 TCAGTGATAT
* * * *
7727465 TCAGGCTTTATGCCTAGTAGGCTTTATGCCGGTGAATTATATCAGGCTTATTGCCTAGCAGGCTT
1 TCAGGCTTTATGCCTAGAAGGCTTTATGCCGGTGAATTATATCAGGCCTATTGCCTAACAGGCTC
** *
7727530 TATGCTGGTGTATTATT
66 TATGCCAGTGTATTATC
* * *
7727547 TCAAGC-TTATTGCCTAGAAGGCTTTATGCCGGTGTATTATTTCAGGCCTATTGCCTAACAGGCT
1 TCAGGCTTTA-TGCCTAGAAGGCTTTATGCCGGTGAATTATATCAGGCCTATTGCCTAACAGGCT
* *
7727611 CTGTGCCAGTGTATTGTAC
65 CTATGCCAGTGTATTAT-C
7727630 T-AGGCTTTATGCCTAG
1 TCAGGCTTTATGCCTAG
7727646 CAAATTTTAT
Statistics
Matches: 83, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
81 3 0.04
82 76 0.92
83 4 0.05
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.37
Consensus pattern (82 bp):
TCAGGCTTTATGCCTAGAAGGCTTTATGCCGGTGAATTATATCAGGCCTATTGCCTAACAGGCTC
TATGCCAGTGTATTATC
Found at i:7729744 original size:180 final size:180
Alignment explanation
Indices: 7729429--7729767 Score: 516
Period size: 180 Copynumber: 1.9 Consensus size: 180
7729419 TAAGATCTGT
*
7729429 TAATTTTACCAGAAACTAGACTCACATATATTCTTACCATAAAATTTTCAGAATTTTTGGTTTAG
1 TAATTTTACCAGAAACTAGACTCAAATATATTCTTACCATAAAATTTTCAGAATTTTTGGTTTAG
* * * *
7729494 CCAATTAATACATTTTATTCATTAAAGTTACCCATGTTTCACTATCCAATAGTTCCGACCTCTCT
66 CCAATTAATACATTTTATCCATTAAAGATACCCATATTTCACTATCCAACAGTTCCGACCTCTCT
7729559 TCACTAAAAATTATTTATCTCATGATACATGACTCTAAATTAAGAACCTC
131 TCACTAAAAATTATTTATCTCATGATACATGACTCTAAATTAAGAACCTC
* *
7729609 TAATTTTTCCAGAAACTAGACTCAAATATATTCTTACCATAAAATTTTCATAATTTTTGGTTTAG
1 TAATTTTACCAGAAACTAGACTCAAATATATTCTTACCATAAAATTTTCAGAATTTTTGGTTTAG
* * * * * ** * * *
7729674 TCAATTAGTATATTTTATCCATTAAAGATACCCCTATTTCACTGTCTGACAGTTCTGACCTTTTT
66 CCAATTAATACATTTTATCCATTAAAGATACCCATATTTCACTATCCAACAGTTCCGACCTCTCT
*
7729739 TCACTAAAAATTATTTATCTCATGGTACA
131 TCACTAAAAATTATTTATCTCATGATACA
7729768 GATCTCAGAT
Statistics
Matches: 141, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
180 141 1.00
ACGTcount: A:0.33, C:0.19, G:0.08, T:0.40
Consensus pattern (180 bp):
TAATTTTACCAGAAACTAGACTCAAATATATTCTTACCATAAAATTTTCAGAATTTTTGGTTTAG
CCAATTAATACATTTTATCCATTAAAGATACCCATATTTCACTATCCAACAGTTCCGACCTCTCT
TCACTAAAAATTATTTATCTCATGATACATGACTCTAAATTAAGAACCTC
Found at i:7730438 original size:50 final size:50
Alignment explanation
Indices: 7730325--7730807 Score: 472
Period size: 50 Copynumber: 9.6 Consensus size: 50
7730315 TTGGTATTCA
* * * *
7730325 TAGTAGCCTGGACTTAGTACTACACATGCGACCTATCAATTTG-TACATG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGATACACG
* * * *
7730374 TAGTAGCCTGCACTTAGTACTACAGACGTGACTTATCCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGATACACG
* * ** * * *
7730424 TAGTAGCCTTCACTTAGTACTACACACGTGATCGAAGTTAA-C-GAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAATCTGA-TACACG
* *
7730475 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGATACACG
* * *
7730525 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGATACACG
* * * ** * * *
7730575 TAGTAGCCTGCATTTAGGACTACACACGTGATCGAAGTTAA-C-GAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAATCTGA-TACACG
** *
7730626 TAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGATACACG
* * *
7730676 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGATACACG
* * * * * * *
7730726 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAAAACTATCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCT--ATCAATCTGATACACG
* *
7730778 TAGTAGCCTACACATAGTACTACACATGTG
1 TAGTAGCCTGCACTTAGTACTACACATGTG
7730808 TTCTCACAAC
Statistics
Matches: 354, Mismatches: 67, Indels: 23
0.80 0.15 0.05
Matches are distributed among these distances:
49 42 0.12
50 200 0.56
51 70 0.20
52 42 0.12
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGATACACG
Found at i:7730498 original size:101 final size:100
Alignment explanation
Indices: 7730325--7730756 Score: 410
Period size: 101 Copynumber: 4.3 Consensus size: 100
7730315 TTGGTATTCA
* * * * *** *
7730325 TAGTAGCCTGGACTTAGTACTACACATGCG-ACCTATCAATTTGTACATGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGAACCAATCAACGAGTACACGTAGTAGCCTGCACTT
* *
7730389 AGTACTACAGACGTGACTTATCCATCTGATACACG
66 AGTACTACACACGTGACCTATCCATCTGATACACG
* * * * * *
7730424 TAGTAGCCTTCACTTAGTACTACACACGTGATCGAAGTTAACGAGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGAACCAA-TCAACGAGTACACGTAGTAGCCTGCACT
* * * *
7730489 TAGTACTACACATGCGACCTATCAATCTGGTACACG
65 TAGTACTACACACGTGACCTATCCATCTGATACACG
* * * * * *
7730525 TAGTAGCCTGCACTTAGTACTACACATGTG-ACCTAACCATCTAATACACGTAGTAGCCTGCATT
1 TAGTAGCCTGCACTTAGTACTACACACGTGAACC-AATCAACGAGTACACGTAGTAGCCTGCACT
* ** * * * *
7730589 TAGGACTACACACGTGATCGAAGT-TAAC-GAGTACGCA
65 TAGTACTACACACGTGA-CCTA-TCCATCTGA-TACACG
*
7730626 TAGTAGCCTGCACTTAGTACTACACA--TGCAACCTATCAATCTG-GTACACGTAGTAGCCTGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTG-AACCAATCAA-C-GAGTACACGTAGTAGCCTGCA
* * *
7730688 CTTAGTACTACACATGTGACCTAACCATCTAATACACG
63 CTTAGTACTACACACGTGACCTATCCATCTGATACACG
7730726 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
7730757 CTTAAAACTA
Statistics
Matches: 261, Mismatches: 58, Indels: 26
0.76 0.17 0.08
Matches are distributed among these distances:
99 28 0.11
100 75 0.29
101 155 0.59
102 3 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGAACCAATCAACGAGTACACGTAGTAGCCTGCACTT
AGTACTACACACGTGACCTATCCATCTGATACACG
Found at i:7730579 original size:151 final size:151
Alignment explanation
Indices: 7730323--7730756 Score: 753
Period size: 151 Copynumber: 2.9 Consensus size: 151
7730313 CTTTGGTATT
* * *
7730323 CATAGTAGCCTGGACTTAGTACTACACATGCGACCTATCAAT-TTGTACATGTAGTAGCCTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCAC
* * * * * *
7730387 TTAGTACTACAGACGTGACTTATCCATCTGATACACGTAGTAGCCTTCACTTAGTACTACACACG
66 TTAGTACTACACATGTGACCTAACCATCTAATACACGTAGTAGCCTGCACTTAGTACTACACACG
7730452 TGATCGAAGTTAACGAGTACG
131 TGATCGAAGTTAACGAGTACG
7730473 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCAC
* *
7730538 TTAGTACTACACATGTGACCTAACCATCTAATACACGTAGTAGCCTGCATTTAGGACTACACACG
66 TTAGTACTACACATGTGACCTAACCATCTAATACACGTAGTAGCCTGCACTTAGTACTACACACG
7730603 TGATCGAAGTTAACGAGTACG
131 TGATCGAAGTTAACGAGTACG
*
7730624 CATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTGGTACACGTAGTAGCCTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCAC
7730689 TTAGTACTACACATGTGACCTAACCATCTAATACACGTAGTAGCCTGCACTTAGTACTACACACG
66 TTAGTACTACACATGTGACCTAACCATCTAATACACGTAGTAGCCTGCACTTAGTACTACACACG
7730754 TGA
131 TGA
7730757 CTTAAAACTA
Statistics
Matches: 269, Mismatches: 14, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
150 41 0.15
151 228 0.85
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (151 bp):
CATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCAC
TTAGTACTACACATGTGACCTAACCATCTAATACACGTAGTAGCCTGCACTTAGTACTACACACG
TGATCGAAGTTAACGAGTACG
Found at i:7733736 original size:15 final size:15
Alignment explanation
Indices: 7733707--7733749 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
7733697 TGTTATTTTC
*
7733707 TTTTATTT-TCTTAG
1 TTTTATTTAACTTAG
7733721 TTTTATTTAACTTAG
1 TTTTATTTAACTTAG
*
7733736 TTGTATTTAACTTA
1 TTTTATTTAACTTA
7733750 TACATGTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
14 8 0.31
15 18 0.69
ACGTcount: A:0.23, C:0.07, G:0.07, T:0.63
Consensus pattern (15 bp):
TTTTATTTAACTTAG
Found at i:7737619 original size:17 final size:17
Alignment explanation
Indices: 7737599--7737636 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
7737589 AATTGTCTAT
* *
7737599 TTTTCTTTATTTATTTC
1 TTTTCGTTATTTATTTA
7737616 TTTTCGTTATTTATTTA
1 TTTTCGTTATTTATTTA
7737633 TTTT
1 TTTT
7737637 TATTTCCTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.13, C:0.08, G:0.03, T:0.76
Consensus pattern (17 bp):
TTTTCGTTATTTATTTA
Found at i:7743235 original size:46 final size:46
Alignment explanation
Indices: 7743185--7743351 Score: 144
Period size: 46 Copynumber: 3.6 Consensus size: 46
7743175 GTATCCAATT
7743185 CATGTCCCAGACATGTCTTACACTAGCT-TACGTCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTAC-TCTCGAGGCCGATG
* * * * * *
7743231 CATGTCCGAGACATGTCTTACATTGGCTCCTA-TCTCAATGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-CTACTCTCGAGGCCGATG
* * * * * *
7743277 CCATGTCCCAAACATGGTCTTACGCTGGCTCT-CATAAT-GTGGCCGGTG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTCTAC-T-CTCGAGGCCGATG
7743325 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
7743352 ACACAAACAA
Statistics
Matches: 95, Mismatches: 19, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
46 47 0.49
47 27 0.28
48 20 0.21
49 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTACTCTCGAGGCCGATG
Found at i:7743343 original size:140 final size:141
Alignment explanation
Indices: 7743083--7743351 Score: 355
Period size: 140 Copynumber: 1.9 Consensus size: 141
7743073 TGGGTAAGGT
* *
7743083 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGTTCATATCTCAAGTAGACGCCATGTCCCAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTAGACGCCATGTCCCAA
** * *
7743148 ACATGGTCTTACACTGACTATCATCTTGTATCCAATTCATGTCCCAGACATGTCTTACACTAGCT
66 ACATGGTCTTACACTGACTATCATAATGTAGCCAATGCATGTCCCAGACATGTCTTACACTAGCT
7743213 TACGTCTCGAG
131 TACGTCTCGAG
* * * *
7743224 GCCGATG-CATGTCCGAGACAT-GTCTTACATTGGCTCCTATCTCAATGCT-GATGCCATGTCCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAA-G-TAGACGCCATGTCCC
* * * * **
7743286 AAACATGGTCTTACGCTGGCTCTCATAATGTGGCCGGTGCATGTCCCAGACATGTCTTACACTAG
64 AAACATGGTCTTACACTGACTATCATAATGTAGCCAATGCATGTCCCAGACATGTCTTACACTAG
7743351 C
129 C
7743352 ACACAAACAA
Statistics
Matches: 110, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
139 21 0.19
140 81 0.74
141 8 0.07
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29
Consensus pattern (141 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTAGACGCCATGTCCCAA
ACATGGTCTTACACTGACTATCATAATGTAGCCAATGCATGTCCCAGACATGTCTTACACTAGCT
TACGTCTCGAG
Found at i:7750761 original size:47 final size:48
Alignment explanation
Indices: 7750692--7750913 Score: 253
Period size: 46 Copynumber: 4.7 Consensus size: 48
7750682 TGGGTAAGGT
* *
7750692 GTCGATGCCATGTCCCAGACATGGTTTTACACTGGTTCAT-ATCTC-AA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-ATCATCTCGAA
* * * *
7750739 GTCGATGCCATGTCCTAGACATGGTCTTACAATGACTATCATCTCGTA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCTCGAA
* * *
7750787 GCCGATG-CATGTCCCAGACAT-GTCTTAAACTGGCT-TACATCTCGAG
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTAT-CATCTCGAA
* * *
7750833 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTC-AA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCTCGAA
7750878 TGTCGATGCCATGTCCCAGACATGGTCTTACACTGG
1 -GTCGATGCCATGTCCCAGACATGGTCTTACACTGG
7750914 ATCTCATAAT
Statistics
Matches: 150, Mismatches: 18, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
45 2 0.01
46 65 0.43
47 65 0.43
48 18 0.12
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (48 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCTCGAA
Found at i:7750938 original size:47 final size:45
Alignment explanation
Indices: 7750694--7750957 Score: 198
Period size: 46 Copynumber: 5.7 Consensus size: 45
7750684 GGTAAGGTGT
* * *
7750694 CGATGCCATGTCCCAGACATGGTTTTACACTGG-TTCATATCTCAAGT
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGATTCATATGT--AGC
* * *
7750741 CGATGCCATGTCCTAGACATGGTCTTACAAT-GACTATCATCTCGTAGC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGA-T-TCATAT-GTAGC
* * *
7750789 CGATG-CATGTCCCAGACATGTCTTAAACTGGCTTACATCTCG-AGGC
1 CGATGCCATGTCCCAGACATGTCTTACACTGGATT-CATAT-GTA-GC
* * * ** *
7750835 CGATG-CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGT
1 CGATGCCATGTCCCAGACATGTCTTACACTGGAT-TCATATGTA-GC
*
7750881 CGATGCCATGTCCCAGACATGGTCTTACACTGGATCTCATAATGTGGC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGAT-TCAT-ATGTAGC
*
7750929 CGATG-CATGTCCCAAACATGTCTTACACT
1 CGATGCCATGTCCCAGACATGTCTTACACT
7750958 AGCTCGCAAA
Statistics
Matches: 182, Mismatches: 23, Indels: 25
0.79 0.10 0.11
Matches are distributed among these distances:
45 2 0.01
46 72 0.40
47 70 0.38
48 31 0.17
49 6 0.03
50 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (45 bp):
CGATGCCATGTCCCAGACATGTCTTACACTGGATTCATATGTAGC
Found at i:7750939 original size:94 final size:90
Alignment explanation
Indices: 7750691--7750962 Score: 289
Period size: 94 Copynumber: 2.9 Consensus size: 90
7750681 ATGGGTAAGG
* * * * *
7750691 TGTCGATGCCATGTCCCAGACATGGTTTTACACTGGTTCATATCTCAAGTCGATGCCATGTCCTA
1 TGTCGATGCCATGTCCCAGACATGGTCTTACACTGGTTCATATGT--GGCCGATG-CATGTCCCA
* * *
7750756 GACATGGTCTTACAAT-GACTATCATCTCG
63 GACAT-GTCTTACACTAG-CTCTCATCTCA
* * * *
7750785 TAGCCGATG-CATGTCCCAGACAT-GTCTTAAACTGGCTTACATCTCGAGGCCGATGCATGTCCC
1 T-GTCGATGCCATGTCCCAGACATGGTCTTACACTGG-TT-CATAT-GTGGCCGATGCATGTCCC
7750848 AGACATGTCTTACACTAGCTCTCATCTCAA
62 AGACATGTCTTACACTAGCTCTCATCTC-A
7750878 TGTCGATGCCATGTCCCAGACATGGTCTTACACTGGATCTCATAATGTGGCCGATGCATGTCCCA
1 TGTCGATGCCATGTCCCAGACATGGTCTTACACTGG-T-TCAT-ATGTGGCCGATGCATGTCCCA
*
7750943 AACATGTCTTACACTAGCTC
63 GACATGTCTTACACTAGCTC
7750963 GCAAACAAAT
Statistics
Matches: 150, Mismatches: 18, Indels: 20
0.80 0.10 0.11
Matches are distributed among these distances:
92 24 0.16
93 39 0.26
94 75 0.50
95 12 0.08
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (90 bp):
TGTCGATGCCATGTCCCAGACATGGTCTTACACTGGTTCATATGTGGCCGATGCATGTCCCAGAC
ATGTCTTACACTAGCTCTCATCTCA
Found at i:7750952 original size:140 final size:141
Alignment explanation
Indices: 7750694--7750953 Score: 368
Period size: 140 Copynumber: 1.9 Consensus size: 141
7750684 GGTAAGGTGT
* * * *
7750694 CGATGCCATGTCCCAGACATGGTTTTACACTGGTTCATATCTCAAGTCGATGCCATGTCCTAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGTCGATGCCATGTCCCAGAC
* *
7750759 ATGGTCTTACAATGACTATCATCTCGTAGCCGATGCATGTCCCAGACATGTCTTAAACTGGCTTA
66 ATGGTCTTACAATGACTATCATATCGTAGCCGATGCATGTCCCAAACATGTCTTAAACTGGCTTA
7750824 CATCTCGAGGC
131 CATCTCGAGGC
7750835 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTC-TCATCTCAATGTCGATGCCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCAT-ATCTCAA-GTCGATGCCATGTCCCAG
* * *
7750897 ACATGGTCTTACACTGGA-TCTCATAAT-GTGGCCGATGCATGTCCCAAACATGTCTTA
64 ACATGGTCTTACAAT-GACTATCAT-ATCGTAGCCGATGCATGTCCCAAACATGTCTTA
7750954 CACTAGCTCG
Statistics
Matches: 106, Mismatches: 9, Indels: 9
0.85 0.07 0.07
Matches are distributed among these distances:
138 1 0.01
139 19 0.18
140 78 0.74
141 8 0.08
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (141 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGTCGATGCCATGTCCCAGAC
ATGGTCTTACAATGACTATCATATCGTAGCCGATGCATGTCCCAAACATGTCTTAAACTGGCTTA
CATCTCGAGGC
Found at i:7756979 original size:49 final size:47
Alignment explanation
Indices: 7756913--7757122 Score: 305
Period size: 47 Copynumber: 4.4 Consensus size: 47
7756903 ATTGATGTAC
* * *
7756913 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
7756960 AAGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
7757009 ACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
7757056 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGG
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
7757103 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
7757123 TCCCGAAGGG
Statistics
Matches: 149, Mismatches: 10, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
46 1 0.01
47 106 0.71
49 41 0.28
50 1 0.01
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.27
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:7757094 original size:22 final size:22
Alignment explanation
Indices: 7756974--7757094 Score: 59
Period size: 22 Copynumber: 5.2 Consensus size: 22
7756964 ATATATATGC
7756974 GTGATAAGGCCGAATGGCCAAT
1 GTGATAAGGCCGAATGGCCAAT
* * *
7756996 GTGATGAATG-TGAACAT-GCATATAT
1 GTGAT-AAGGCCG-A-ATGGC-CA-AT
*
7757021 GAGATAAGGCCGAATGGCCAAT
1 GTGATAAGGCCGAATGGCCAAT
* * ***
7757043 GTGATGAATG-TGAAAGTGTATATAT
1 GTGAT-AAGGCCG-AA-TGGCCA-AT
7757068 GTGATAAGGCCGAATGGCCAAT
1 GTGATAAGGCCGAATGGCCAAT
7757090 GTGAT
1 GTGAT
7757095 GGATGTGGAA
Statistics
Matches: 69, Mismatches: 18, Indels: 24
0.62 0.16 0.22
Matches are distributed among these distances:
22 20 0.29
23 17 0.25
24 17 0.25
25 15 0.22
ACGTcount: A:0.34, C:0.12, G:0.30, T:0.25
Consensus pattern (22 bp):
GTGATAAGGCCGAATGGCCAAT
Found at i:7757121 original size:94 final size:94
Alignment explanation
Indices: 7756913--7757122 Score: 305
Period size: 96 Copynumber: 2.2 Consensus size: 94
7756903 ATTGATGTAC
* * *
7756913 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATATATATGCGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATAT-CGTGA
7756978 TAAGGCCGAATGGCCAATGTGATGAATGTG
65 TAAGGCCGAATGGCCAATGTGATGAATGTG
* * * *
7757008 AACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT-GTGA
1 AA-GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATCGTGA
*
7757072 TAAGGCCGAATGGCCAATGTGATGGATGTGG
65 TAAGGCCGAATGGCCAATGTGATGAATGT-G
*
7757103 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
7757123 TCCCGAAGGG
Statistics
Matches: 101, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
94 46 0.46
95 5 0.05
96 50 0.50
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.27
Consensus pattern (94 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATCGTGAT
AAGGCCGAATGGCCAATGTGATGAATGTG
Found at i:7759967 original size:23 final size:24
Alignment explanation
Indices: 7759940--7759986 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
7759930 ATTATCATAA
* *
7759940 CATTCCAAACTTGC-CATAAGATT
1 CATTCAAAACGTGCACATAAGATT
7759963 CATTCAAAACGTGCATCATAAGAT
1 CATTCAAAACGTGCA-CATAAGAT
7759987 AACCAAAATG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 12 0.60
25 8 0.40
ACGTcount: A:0.38, C:0.23, G:0.11, T:0.28
Consensus pattern (24 bp):
CATTCAAAACGTGCACATAAGATT
Found at i:7761199 original size:37 final size:37
Alignment explanation
Indices: 7761141--7761252 Score: 197
Period size: 37 Copynumber: 3.0 Consensus size: 37
7761131 GCTCAGACGA
* * *
7761141 AATCTCCACATGAAGTTATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
7761178 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
7761215 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
7761252 A
1 A
7761253 TTTCCAAGTT
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 72 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:7761460 original size:46 final size:46
Alignment explanation
Indices: 7761410--7761600 Score: 132
Period size: 46 Copynumber: 4.2 Consensus size: 46
7761400 ACATATCTCA
7761410 CATTAGCCATTTGGCTTTACCACATATCCATCTCATACACGTTTCG
1 CATTAGCCATTTGGCTTTACCACATATCCATCTCATACACGTTTCG
** * *
7761456 CATTAGCCATTCAGCCTTACCACATAT--AT-TCATGTCACCGTTT-G
1 CATTAGCCATTTGGCTTTACCACATATCCATCTCAT-ACA-CGTTTCG
* ** * * * ** * *
7761500 TCATTTGGCCA-----CAATA-TATATATACACATCTCGTACATATCTCA
1 -CA-TTAGCCATTTGGCTTTACCACATAT-C-CATCTCATACACGTTTCG
7761544 CATTAGCCATTTGGCTTTACCACATATCCATCTCATACACGTTTCG
1 CATTAGCCATTTGGCTTTACCACATATCCATCTCATACACGTTTCG
7761590 CATTAGCCATT
1 CATTAGCCATT
7761601 CAGCCTTATC
Statistics
Matches: 104, Mismatches: 25, Indels: 32
0.65 0.16 0.20
Matches are distributed among these distances:
40 5 0.05
41 3 0.03
42 6 0.06
43 8 0.08
44 9 0.09
45 10 0.10
46 54 0.52
47 4 0.04
48 5 0.05
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.35
Consensus pattern (46 bp):
CATTAGCCATTTGGCTTTACCACATATCCATCTCATACACGTTTCG
Found at i:7761517 original size:134 final size:134
Alignment explanation
Indices: 7761356--7761613 Score: 507
Period size: 134 Copynumber: 1.9 Consensus size: 134
7761346 TACACACCTT
7761356 TCACCGTTTGTCATTTGGCCACAATATATATATACACATCTCGTACATATCTCACATTAGCCATT
1 TCACCGTTTGTCATTTGGCCACAATATATATATACACATCTCGTACATATCTCACATTAGCCATT
7761421 TGGCTTTACCACATATCCATCTCATACACGTTTCGCATTAGCCATTCAGCCTTACCACATATATT
66 TGGCTTTACCACATATCCATCTCATACACGTTTCGCATTAGCCATTCAGCCTTACCACATATATT
7761486 CATG
131 CATG
7761490 TCACCGTTTGTCATTTGGCCACAATATATATATACACATCTCGTACATATCTCACATTAGCCATT
1 TCACCGTTTGTCATTTGGCCACAATATATATATACACATCTCGTACATATCTCACATTAGCCATT
*
7761555 TGGCTTTACCACATATCCATCTCATACACGTTTCGCATTAGCCATTCAGCCTTATCACA
66 TGGCTTTACCACATATCCATCTCATACACGTTTCGCATTAGCCATTCAGCCTTACCACA
7761614 CATACGCATG
Statistics
Matches: 123, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
134 123 1.00
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.34
Consensus pattern (134 bp):
TCACCGTTTGTCATTTGGCCACAATATATATATACACATCTCGTACATATCTCACATTAGCCATT
TGGCTTTACCACATATCCATCTCATACACGTTTCGCATTAGCCATTCAGCCTTACCACATATATT
CATG
Found at i:7761648 original size:47 final size:47
Alignment explanation
Indices: 7761590--7761832 Score: 324
Period size: 47 Copynumber: 5.0 Consensus size: 47
7761580 ACACGTTTCG
* *
7761590 CATTAGCCATTCAGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* *
7761637 CATTGGCCATTCGGTCTTATCACACATACACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** *
7761684 CATTGGCCATTCGGCCTTATCACGCATATATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C------ACATACGCATGTTCACATTCATCA
*
7761739 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
7761786 CAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
7761833 TATAAAATCC
Statistics
Matches: 173, Mismatches: 15, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
47 128 0.74
49 1 0.01
53 1 0.01
55 43 0.25
ACGTcount: A:0.28, C:0.30, G:0.12, T:0.30
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:7761799 original size:102 final size:102
Alignment explanation
Indices: 7761623--7761813 Score: 337
Period size: 102 Copynumber: 1.9 Consensus size: 102
7761613 ACATACGCAT
* * *
7761623 GTTCACATTCATCACATTGGCCATTCGGTCTTATCACACATACACATGTTCACATTCATCACATT
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATCCATCACAGT
*
7761688 GGCCATTCGGCCTTATCACGCATATATATATATACAG
66 GGCCATTCGGCCTTATCACACATATATATATATACAG
*
7761725 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAGT
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATCCATCACAGT
7761790 GGCCATTCGGCCTTATCACACATA
66 GGCCATTCGGCCTTATCACACATA
7761814 CGCATGTTCA
Statistics
Matches: 84, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
102 84 1.00
ACGTcount: A:0.27, C:0.30, G:0.13, T:0.30
Consensus pattern (102 bp):
GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATCCATCACAGT
GGCCATTCGGCCTTATCACACATATATATATATACAG
Found at i:7771934 original size:16 final size:16
Alignment explanation
Indices: 7771909--7771944 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
7771899 ACCTTAATTT
7771909 TTTC-CATTTTTTTTC
1 TTTCTCATTTTTTTTC
*
7771924 TTTCTCATTTTTTTTG
1 TTTCTCATTTTTTTTC
7771940 TTTCT
1 TTTCT
7771945 ATACAAAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.06, C:0.17, G:0.03, T:0.75
Consensus pattern (16 bp):
TTTCTCATTTTTTTTC
Found at i:7772817 original size:6 final size:6
Alignment explanation
Indices: 7772784--7772820 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
7772774 AAGAAGATAA
*
7772784 ATAAAA ATAAA- AT-AAG ATAAAG ATAAAG ATAAAG ATA
1 ATAAAG ATAAAG ATAAAG ATAAAG ATAAAG ATAAAG ATA
7772821 TAACAAAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 2 0.07
5 4 0.14
6 23 0.79
ACGTcount: A:0.70, C:0.00, G:0.11, T:0.19
Consensus pattern (6 bp):
ATAAAG
Found at i:7776766 original size:44 final size:45
Alignment explanation
Indices: 7776689--7776773 Score: 127
Period size: 44 Copynumber: 1.9 Consensus size: 45
7776679 GTCTTGTAGT
** *
7776689 GGGGTTTGCCAGAAGGGCTCACAAGGGAAGTTTGCGGTCCCAGTA
1 GGGGTTTGCCAGAAGAACTCACAAGGGAAGTTTGCGATCCCAGTA
*
7776734 GGGGTTTGCCAGAA-AACTTACAAGGGAAGTTTGCGATCCC
1 GGGGTTTGCCAGAAGAACTCACAAGGGAAGTTTGCGATCCC
7776774 TTTTAGAGTT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 22 0.61
45 14 0.39
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (45 bp):
GGGGTTTGCCAGAAGAACTCACAAGGGAAGTTTGCGATCCCAGTA
Found at i:7783753 original size:155 final size:154
Alignment explanation
Indices: 7783531--7783893 Score: 505
Period size: 155 Copynumber: 2.4 Consensus size: 154
7783521 GCGTTTTTGG
* * * *
7783531 AAAAACGCCGCTATAGATCAAGAATTAGTGGCGTTTTTAAGAAAGCGCCGCTATAAGTCGACCTA
1 AAAAACGCCGCTATAGATTAAGTATTAGCGGCATTTTTAAGAAAGCGCCGCTATAAGTCGACCTA
*
7783596 TAGCAATGTTTTTATACAAACGCTGCTAAAAGATTAAGTCGAACAGCATCGTTTATTGTGAACTT
66 TAGCAATGTTTTTATACAAACGCCGCTAAAAGATTAAGTCGAACAGCATCGTTTATTGTGAACTT
* *
7783661 CAGTGGCAATAGCGGCGCTTTATC
131 CAGTGGCAATAGCGGCACTTCATC
* * *
7783685 AAAAACGCCGCTATAAGTTTGAGTATTAGCGGCATTTTTCAGAAAGCGCCGCTATAAGTCGACCT
1 AAAAACGCCGCTAT-AGATTAAGTATTAGCGGCATTTTTAAGAAAGCGCCGCTATAAGTCGACCT
* * * * *
7783750 ATAGCGATGTTTTTATACAAACGCCGCTAAAAGATTAAGTCGAACGGCGTCGTTTATTTTGAGCT
65 ATAGCAATGTTTTTATACAAACGCCGCTAAAAGATTAAGTCGAACAGCATCGTTTATTGTGAACT
*
7783815 TCAGTGGCAATAGCGGCACTTCCTC
130 TCAGTGGCAATAGCGGCACTTCATC
* * **
7783840 AAAAACGCTGCTATAGATTCAGTATTAGCAGCGC-TTTTTAA-AAAATGCCGCTAT
1 AAAAACGCCGCTATAGATTAAGTATTAGC-G-GCATTTTTAAGAAAGCGCCGCTAT
7783894 GGATTTGAGT
Statistics
Matches: 184, Mismatches: 22, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
154 38 0.21
155 144 0.78
156 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (154 bp):
AAAAACGCCGCTATAGATTAAGTATTAGCGGCATTTTTAAGAAAGCGCCGCTATAAGTCGACCTA
TAGCAATGTTTTTATACAAACGCCGCTAAAAGATTAAGTCGAACAGCATCGTTTATTGTGAACTT
CAGTGGCAATAGCGGCACTTCATC
Found at i:7783980 original size:42 final size:41
Alignment explanation
Indices: 7783840--7783980 Score: 158
Period size: 41 Copynumber: 3.4 Consensus size: 41
7783830 GCACTTCCTC
* * * *
7783840 AAAAACGCTGCTATAGA-TTCAGTATTAGCAGCGCTTTTTA
1 AAAAACGCCGCTATAGATTTGAGTTTTAGCGGCGCTTTTTA
* * * *
7783880 AAAAATGCCGCTATGGATTTGAGTTTTAGTGGCGCTTTTCA
1 AAAAACGCCGCTATAGATTTGAGTTTTAGCGGCGCTTTTTA
* *
7783921 AAAAACGCCGCAATAGATTTGAGTTTTAGCGGCGCTTTTTGG
1 AAAAACGCCGCTATAGATTTGAGTTTTAGCGGCGCTTTTT-A
**
7783963 AAAAACGCCATTATAGAT
1 AAAAACGCCGCTATAGAT
7783981 CTAAACTATT
Statistics
Matches: 82, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
40 14 0.17
41 53 0.65
42 15 0.18
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.32
Consensus pattern (41 bp):
AAAAACGCCGCTATAGATTTGAGTTTTAGCGGCGCTTTTTA
Found at i:7784554 original size:28 final size:29
Alignment explanation
Indices: 7784502--7784556 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
7784492 CTTAACCCCT
* *
7784502 AAACCCATAAACTATAGACCTTAAATTTG
1 AAACCCATAAACTATAAACCCTAAATTTG
7784531 AAACCC-TAAACTATAAACCCTAAATT
1 AAACCCATAAACTATAAACCCTAAATT
7784557 AATGACACGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 18 0.75
29 6 0.25
ACGTcount: A:0.47, C:0.24, G:0.04, T:0.25
Consensus pattern (29 bp):
AAACCCATAAACTATAAACCCTAAATTTG
Found at i:7787276 original size:11 final size:11
Alignment explanation
Indices: 7787260--7787288 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
7787250 CGGCTATGAA
7787260 GAACAAAGAAT
1 GAACAAAGAAT
7787271 GAACAAAGAAT
1 GAACAAAGAAT
7787282 GAACAAA
1 GAACAAA
7787289 AACCTTCCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.66, C:0.10, G:0.17, T:0.07
Consensus pattern (11 bp):
GAACAAAGAAT
Found at i:7787450 original size:32 final size:32
Alignment explanation
Indices: 7787413--7787477 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
7787403 AATGCTTACC
7787413 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
7787445 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
7787477 A
1 A
7787478 AATGCATACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:7788002 original size:44 final size:44
Alignment explanation
Indices: 7787921--7788010 Score: 110
Period size: 44 Copynumber: 2.0 Consensus size: 44
7787911 TATTGATTGT
* *
7787921 GGATTTAGGGATTATGGTTTATGGTTCAAGAGCTAAAGGTTTAG
1 GGATTTAGGGATTATGGTTTAGGGTTCAAGAGCTAAAGGTTGAG
* * **
7787965 GGATTTGGGGTTTATGGTTTAGGGGTT-AAGATTTAAAGGTTGAG
1 GGATTTAGGGATTATGGTTTA-GGGTTCAAGAGCTAAAGGTTGAG
7788009 GG
1 GG
7788011 TCTAGGCGTT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
44 35 0.90
45 4 0.10
ACGTcount: A:0.24, C:0.02, G:0.37, T:0.37
Consensus pattern (44 bp):
GGATTTAGGGATTATGGTTTAGGGTTCAAGAGCTAAAGGTTGAG
Found at i:7788091 original size:80 final size:80
Alignment explanation
Indices: 7788007--7788171 Score: 215
Period size: 80 Copynumber: 2.1 Consensus size: 80
7787997 TTAAAGGTTG
* * *
7788007 AGGGTCTAGGCGTTAAAGGTT-AAGAGTTAATGGGTTAAGGGGATATGGTTTAGGGTTTAGTGTT
1 AGGGTCTAGG-GTTAAAGGTTGAAGAGTTAAGGGGTTAAGGGGACATGGTTTAGGGTTTAATGTT
7788071 TAAAATTTAGGGATTA
65 TAAAATTTAGGGATTA
* * * * * * *
7788087 AGGGTTTATGTTTTAAGGTTGATGGGTTTAGGGGTTAAGGGGACATGGTTTAGGGTTTAATGTTT
1 AGGGTCTAGGGTTAAAGGTTGAAGAGTTAAGGGGTTAAGGGGACATGGTTTAGGGTTTAATGTTT
*
7788152 AAATTTTAGGGATTA
66 AAAATTTAGGGATTA
7788167 AGGGT
1 AGGGT
7788172 TAATGGTTTG
Statistics
Matches: 73, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
79 8 0.11
80 65 0.89
ACGTcount: A:0.26, C:0.02, G:0.35, T:0.38
Consensus pattern (80 bp):
AGGGTCTAGGGTTAAAGGTTGAAGAGTTAAGGGGTTAAGGGGACATGGTTTAGGGTTTAATGTTT
AAAATTTAGGGATTA
Found at i:7788119 original size:29 final size:28
Alignment explanation
Indices: 7788053--7788119 Score: 64
Period size: 29 Copynumber: 2.3 Consensus size: 28
7788043 AAGGGGATAT
*
7788053 GGTTTAGGGTTTAGTGTTTAAAATTTAG
1 GGTTTAGGGTTTAGTGTTTAAAATTGAG
* **
7788081 GGATTAAGGGTTTA-TGTTTTAAGGTTGATG
1 GG-TTTAGGGTTTAGTG-TTTAAAATTGA-G
7788111 GGTTTAGGG
1 GGTTTAGGG
7788120 GTTAAGGGGA
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
28 4 0.13
29 24 0.77
30 3 0.10
ACGTcount: A:0.22, C:0.00, G:0.34, T:0.43
Consensus pattern (28 bp):
GGTTTAGGGTTTAGTGTTTAAAATTGAG
Found at i:7788174 original size:21 final size:21
Alignment explanation
Indices: 7788135--7788174 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
7788125 GGGGACATGG
* * *
7788135 TTTAGGGTTTAATGTTTAAAT
1 TTTAGGGATTAAGGGTTAAAT
7788156 TTTAGGGATTAAGGGTTAA
1 TTTAGGGATTAAGGGTTAA
7788175 TGGTTTGGGG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.25, T:0.45
Consensus pattern (21 bp):
TTTAGGGATTAAGGGTTAAAT
Found at i:7788386 original size:16 final size:16
Alignment explanation
Indices: 7788333--7788386 Score: 50
Period size: 16 Copynumber: 3.8 Consensus size: 16
7788323 ATATTAAATA
7788333 ATTTCAAATTTT-AATG
1 ATTTCAAATTTTCAA-G
7788349 ATTTCAAATTTTC-A-
1 ATTTCAAATTTTCAAG
7788363 A--T--AATTTTCAAG
1 ATTTCAAATTTTCAAG
7788375 ATTTCAAATTTT
1 ATTTCAAATTTT
7788387 ATGTAGTTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 14
0.69 0.00 0.31
Matches are distributed among these distances:
10 7 0.23
11 1 0.03
12 2 0.06
14 2 0.06
16 19 0.61
ACGTcount: A:0.37, C:0.09, G:0.04, T:0.50
Consensus pattern (16 bp):
ATTTCAAATTTTCAAG
Found at i:7790425 original size:9 final size:9
Alignment explanation
Indices: 7790411--7790439 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
7790401 TCCATGTTGA
7790411 ATTTTGTAC
1 ATTTTGTAC
7790420 ATTTTGTAC
1 ATTTTGTAC
7790429 ATTTTGTAC
1 ATTTTGTAC
7790438 AT
1 AT
7790440 ACTTTATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.24, C:0.10, G:0.10, T:0.55
Consensus pattern (9 bp):
ATTTTGTAC
Found at i:7791410 original size:64 final size:64
Alignment explanation
Indices: 7791200--7791397 Score: 378
Period size: 64 Copynumber: 3.1 Consensus size: 64
7791190 TAATATTTCT
7791200 ATATTTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATACAA
1 ATATTTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATACAA
7791264 ATATTTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATACAA
1 ATATTTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATACAA
* *
7791328 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATACGTCCCATCTAATATACAA
1 ATATTTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATACAA
7791392 ATATTT
1 ATATTT
7791398 AATAAAATAT
Statistics
Matches: 132, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
64 132 1.00
ACGTcount: A:0.38, C:0.13, G:0.04, T:0.45
Consensus pattern (64 bp):
ATATTTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATACAA
Found at i:7791511 original size:24 final size:24
Alignment explanation
Indices: 7791445--7791513 Score: 75
Period size: 24 Copynumber: 2.9 Consensus size: 24
7791435 ATTATTATTG
* * *
7791445 AAATATTCTCGTCTGTTTTATCAA
1 AAATATTATAGTCCGTTTTATCAA
** * *
7791469 AAATATTATTTTCCATTTTATCAC
1 AAATATTATAGTCCGTTTTATCAA
7791493 AAATATTATAGTCCGTTTTAT
1 AAATATTATAGTCCGTTTTAT
7791514 TATTTAAGTT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.32, C:0.14, G:0.06, T:0.48
Consensus pattern (24 bp):
AAATATTATAGTCCGTTTTATCAA
Found at i:7791721 original size:29 final size:29
Alignment explanation
Indices: 7791689--7791762 Score: 121
Period size: 29 Copynumber: 2.6 Consensus size: 29
7791679 AACGACATGT
* *
7791689 ATATTATTTAATTAAAATAATTTTTTTCA
1 ATATTATTTAATTAAAATAATTTTTATAA
*
7791718 ATATTATTAAATTAAAATAATTTTTATAA
1 ATATTATTTAATTAAAATAATTTTTATAA
7791747 ATATTATTTAATTAAA
1 ATATTATTTAATTAAA
7791763 TATTATTTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.51
Consensus pattern (29 bp):
ATATTATTTAATTAAAATAATTTTTATAA
Found at i:7791762 original size:15 final size:15
Alignment explanation
Indices: 7791689--7791773 Score: 79
Period size: 15 Copynumber: 5.8 Consensus size: 15
7791679 AACGACATGT
7791689 ATATTATTTAATTAA
1 ATATTATTTAATTAA
* ** *
7791704 A-ATAATTTTTTTCA
1 ATATTATTTAATTAA
*
7791718 ATATTATTAAATTAAA
1 ATATTATTTAATT-AA
7791734 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
7791747 ATATTATTTAATTAA
1 ATATTATTTAATTAA
7791762 ATATTATTTAAT
1 ATATTATTTAAT
7791774 CCCGCGACTT
Statistics
Matches: 54, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
12 3 0.06
13 7 0.13
14 12 0.22
15 24 0.44
16 5 0.09
17 3 0.06
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:7791890 original size:9 final size:9
Alignment explanation
Indices: 7791878--7792252 Score: 230
Period size: 9 Copynumber: 41.6 Consensus size: 9
7791868 TATTTGATAT
*
7791878 CATAATTTA
1 CATAACTTA
7791887 CATAACTTA
1 CATAACTTA
* *
7791896 CAGAACGTA
1 CATAACTTA
7791905 CATAACTTA
1 CATAACTTA
*
7791914 TATAACTTA
1 CATAACTTA
7791923 CATAACTTA
1 CATAACTTA
* *
7791932 TATAACATA
1 CATAACTTA
7791941 CATAACTTA
1 CATAACTTA
*
7791950 TATAACTTA
1 CATAACTTA
* * *
7791959 TATGACATA
1 CATAACTTA
7791968 CATAACTTA
1 CATAACTTA
*
7791977 TATAACTTA
1 CATAACTTA
*
7791986 TATAACTTA
1 CATAACTTA
* *
7791995 GATAA-ATA
1 CATAACTTA
*
7792003 TATAACTTA
1 CATAACTTA
7792012 CATAACTTA
1 CATAACTTA
7792021 CATAACTTA
1 CATAACTTA
*
7792030 TATAACTTA
1 CATAACTTA
7792039 CAT-A-TATA
1 CATAACT-TA
*
7792047 TATAACTTA
1 CATAACTTA
*
7792056 CATAA-ATA
1 CATAACTTA
* *
7792064 TATATCATGT-
1 CATAAC-T-TA
7792074 CATAACTTA
1 CATAACTTA
7792083 CATAACTTA
1 CATAACTTA
*
7792092 CACAATACTTA
1 CA-TA-ACTTA
* *
7792103 AATATATTTTATA
1 CATA-A--CT-TA
*
7792116 TCATAATTTA
1 -CATAACTTA
7792126 CATAACTTA
1 CATAACTTA
*
7792135 CAAAACTTA
1 CATAACTTA
*
7792144 CTTAACTTA
1 CATAACTTA
*
7792153 TATAACTTA
1 CATAACTTA
* *
7792162 GATAA-ATA
1 CATAACTTA
*
7792170 TATAACTT-
1 CATAACTTA
7792178 -ATAACTTA
1 CATAACTTA
7792186 CATAACTTA
1 CATAACTTA
*
7792195 TATAACTTA
1 CATAACTTA
* *
7792204 GATAA-ATA
1 CATAACTTA
* *
7792212 TATAATTTA
1 CATAACTTA
*
7792221 CATAA-ATA
1 CATAACTTA
* * *
7792229 TATATCATA
1 CATAACTTA
7792238 TCATAACTTA
1 -CATAACTTA
7792248 CATAA
1 CATAA
7792253 TACTTAAATA
Statistics
Matches: 286, Mismatches: 60, Indels: 40
0.74 0.16 0.10
Matches are distributed among these distances:
7 8 0.03
8 34 0.12
9 211 0.74
10 17 0.06
11 9 0.03
12 1 0.00
13 3 0.01
14 3 0.01
ACGTcount: A:0.46, C:0.14, G:0.02, T:0.37
Consensus pattern (9 bp):
CATAACTTA
Found at i:7792120 original size:43 final size:41
Alignment explanation
Indices: 7792058--7792288 Score: 121
Period size: 43 Copynumber: 5.8 Consensus size: 41
7792048 ATAACTTACA
*
7792058 TAAATATATATCATGTCATAACTTACATAACTTACACAATACT
1 TAAATATATATCATATCATAACTTACATAACTTACA-AA-ACT
* * *
7792101 TAAATATATTTTATATCATAATTTACATAACTTACAAAACT
1 TAAATATATATCATATCATAACTTACATAACTTACAAAACT
* * * * * *
7792142 T-ACT-TA-A-CTTAT-ATAACTTAGATAA-ATATATAACT
1 TAAATATATATCATATCATAACTTACATAACTTACAAAACT
* * * * * * * *
7792177 TATAACTTACATAACTTAT-ATAACTTAGATAAATATATAATTTACA
1 TA-AA--TATATATCATATCATAACTTACATAACT-TACAA--AACT
7792223 TAAATATATATCATATCATAACTTACATAA--T-----ACT
1 TAAATATATATCATATCATAACTTACATAACTTACAAAACT
*
7792257 TAAATATATATCATATCATATCTTACATAACT
1 TAAATATATATCATATCATAACTTACATAACT
7792289 AGCTTACGAA
Statistics
Matches: 149, Mismatches: 25, Indels: 35
0.71 0.12 0.17
Matches are distributed among these distances:
34 31 0.21
35 8 0.05
36 11 0.07
37 4 0.03
39 3 0.02
40 3 0.02
41 6 0.04
42 20 0.13
43 41 0.28
44 16 0.11
45 2 0.01
46 4 0.03
ACGTcount: A:0.46, C:0.14, G:0.01, T:0.39
Consensus pattern (41 bp):
TAAATATATATCATATCATAACTTACATAACTTACAAAACT
Found at i:7792173 original size:17 final size:17
Alignment explanation
Indices: 7792151--7792232 Score: 65
Period size: 17 Copynumber: 4.4 Consensus size: 17
7792141 TTACTTAACT
7792151 TATATAACTTAGATAAA
1 TATATAACTTAGATAAA
*
7792168 TATATAACTTATAACTTACATAA
1 TATATAACTTA-GA--T--A-AA
7792191 CTTATATAACTTAGATAAA
1 --TATATAACTTAGATAAA
* *
7792210 TATATAATTTACATAAA
1 TATATAACTTAGATAAA
7792227 TATATA
1 TATATA
7792233 TCATATCATA
Statistics
Matches: 53, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
17 32 0.60
18 1 0.02
19 2 0.04
20 2 0.04
22 2 0.04
23 2 0.04
24 1 0.02
25 11 0.21
ACGTcount: A:0.50, C:0.09, G:0.02, T:0.39
Consensus pattern (17 bp):
TATATAACTTAGATAAA
Found at i:7792185 original size:24 final size:25
Alignment explanation
Indices: 7792127--7792203 Score: 77
Period size: 24 Copynumber: 3.0 Consensus size: 25
7792117 CATAATTTAC
* *
7792127 ATAACTTACAAAACTTACT-TAACTTAT
1 ATAACTTACATAACATA-TATAAC-T-T
*
7792154 ATAACTTAGATAA-ATATATAACTT
1 ATAACTTACATAACATATATAACTT
*
7792178 ATAACTTACATAACTTATATAACTT
1 ATAACTTACATAACATATATAACTT
7792203 A
1 A
7792204 GATAAATATA
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
24 13 0.30
25 13 0.30
26 6 0.14
27 11 0.26
ACGTcount: A:0.47, C:0.14, G:0.01, T:0.38
Consensus pattern (25 bp):
ATAACTTACATAACATATATAACTT
Found at i:7797425 original size:13 final size:14
Alignment explanation
Indices: 7797409--7797437 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7797399 TTCTAAATAT
7797409 TTATAA-TGTTTAA
1 TTATAATTGTTTAA
7797422 TTATAATTGTTTAA
1 TTATAATTGTTTAA
7797436 TT
1 TT
7797438 CAATTCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TTATAATTGTTTAA
Found at i:7797916 original size:21 final size:21
Alignment explanation
Indices: 7797852--7797906 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
7797842 ACATAGAGCG
*
7797852 GAGGCAGCAGAGAGGGAGGCA
1 GAGGCAGCAGCGAGGGAGGCA
*
7797873 GTGGCAGCAGCGAGGGAGGCA
1 GAGGCAGCAGCGAGGGAGGCA
7797894 GAGGCAGCAGCGA
1 GAGGCAGCAGCGA
7797907 TGGCAGCAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.29, C:0.18, G:0.51, T:0.02
Consensus pattern (21 bp):
GAGGCAGCAGCGAGGGAGGCA
Done.