Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 240 of 276
Found at i:79202964 original size:117 final size:117
Alignment explanation
Indices: 79202811--79203045 Score: 443
Period size: 117 Copynumber: 2.0 Consensus size: 117
79202801 GCTCCAATTT
79202811 TGTATAGATTTAATTGCTGATTTTCCTTTCAAATAATGGATCATTTTACTTACTTTACATTTGCC
1 TGTATAGATTTAATTGCTGATTTTCCTTTCAAATAATGGATCATTTTACTTACTTTACATTTGCC
* * *
79202876 ATCTAGTTTTCTGCCTTATGTTTTTTGTTATCTGCCATTCAGTTTGCCATGG
66 ATCTAGTTTTCTGCCTTATGTTTTCTATTATCTGCCATTCACTTTGCCATGG
79202928 TGTATAGATTTAATTGCTGATTTTCCTTTCAAATAATGGATCATTTTACTTACTTTACATTTGCC
1 TGTATAGATTTAATTGCTGATTTTCCTTTCAAATAATGGATCATTTTACTTACTTTACATTTGCC
79202993 ATCTAGTTTTCTGCCTTATGTTTTCTATTATCTGCCATTCACTTTGCCATGG
66 ATCTAGTTTTCTGCCTTATGTTTTCTATTATCTGCCATTCACTTTGCCATGG
79203045 T
1 T
79203046 CATATTTTGG
Statistics
Matches: 115, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
117 115 1.00
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.49
Consensus pattern (117 bp):
TGTATAGATTTAATTGCTGATTTTCCTTTCAAATAATGGATCATTTTACTTACTTTACATTTGCC
ATCTAGTTTTCTGCCTTATGTTTTCTATTATCTGCCATTCACTTTGCCATGG
Found at i:79203269 original size:28 final size:28
Alignment explanation
Indices: 79203228--79203282 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
79203218 TAAAGATTTG
*
79203228 ATTATATATTTTATTTTTAATATCAATT
1 ATTATATATTTTATTTTTAATACCAATT
*
79203256 ATTAT-TATTCTTATTTTTCATACCAAT
1 ATTATATATT-TTATTTTTAATACCAAT
79203283 GTAAATTGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.17
28 20 0.83
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.58
Consensus pattern (28 bp):
ATTATATATTTTATTTTTAATACCAATT
Found at i:79203577 original size:105 final size:105
Alignment explanation
Indices: 79203384--79203674 Score: 465
Period size: 105 Copynumber: 2.7 Consensus size: 105
79203374 ATTTTAAATA
*
79203384 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAACGTTTTATTTTGAATATGT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTT-AA-A---
* *
79203449 TATTTTATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTGC
61 TATTTTATTTTATTTAAATTTAATCACGAAAAATATTTTGTCTAC
*
79203494 TTTTATTTTATTTTTGAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
*
79203559 TATTTTATTTAAATTTAATCACGAAAAATATTTTGTTTAC
66 TATTTTATTTAAATTTAATCACGAAAAATATTTTGTCTAC
* * *
79203599 TTTTATTTTATTGTTAAATTACCTCATTAAATTAAATTGTATTTAAAATTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
79203664 TATTTTATTTA
66 TATTTTATTTA
79203675 CGAATTATGA
Statistics
Matches: 172, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
105 114 0.66
108 1 0.01
109 2 0.01
110 55 0.32
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.56
Consensus pattern (105 bp):
TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
TATTTTATTTAAATTTAATCACGAAAAATATTTTGTCTAC
Found at i:79203658 original size:13 final size:14
Alignment explanation
Indices: 79203640--79203670 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
79203630 TTAAATTGTA
79203640 TTTAAA-ATTTTAT
1 TTTAAATATTTTAT
79203653 TTTAAATATTTTAT
1 TTTAAATATTTTAT
79203667 TTTA
1 TTTA
79203671 TTTACGAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.35
14 11 0.65
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (14 bp):
TTTAAATATTTTAT
Found at i:79204992 original size:13 final size:14
Alignment explanation
Indices: 79204976--79205004 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
79204966 TTATAAACAT
79204976 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
79204989 TTATAATGGTTTAA
1 TTATAATGGTTTAA
79205003 TT
1 TT
79205005 CTTCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:79205677 original size:31 final size:31
Alignment explanation
Indices: 79205642--79205707 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
79205632 TGTATTTTTT
* *
79205642 ATGCTACATTTGCTATTTTTGGTTGGATTCA
1 ATGCTACATTTGCTAGTTTTGGTTGAATTCA
* * *
79205673 ATGCTATATTTGCTGGTTTTGGTTGAATTTA
1 ATGCTACATTTGCTAGTTTTGGTTGAATTCA
79205704 ATGC
1 ATGC
79205708 AGGAAGAGTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.20, C:0.11, G:0.21, T:0.48
Consensus pattern (31 bp):
ATGCTACATTTGCTAGTTTTGGTTGAATTCA
Found at i:79205829 original size:43 final size:45
Alignment explanation
Indices: 79205772--79205856 Score: 122
Period size: 43 Copynumber: 1.9 Consensus size: 45
79205762 GGTGTTTGTA
*
79205772 ACAAAGCGCCGCTAAAATCCATGA-CTTTTAGTGGCG-TTTTTCCT
1 ACAAAGCGCCGCTAAAAGCCATGATCTTTT-GTGGCGCTTTTTCCT
*
79205816 ACAAA-CGCTGCTAAAAGCCATGATCTTTTGTGGCGCTTTTT
1 ACAAAGCGCCGCTAAAAGCCATGATCTTTTGTGGCGCTTTTT
79205857 TCAAATAAAC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
43 22 0.59
44 15 0.41
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.33
Consensus pattern (45 bp):
ACAAAGCGCCGCTAAAAGCCATGATCTTTTGTGGCGCTTTTTCCT
Found at i:79211212 original size:23 final size:23
Alignment explanation
Indices: 79211154--79211216 Score: 76
Period size: 23 Copynumber: 2.7 Consensus size: 23
79211144 CATTGCACTA
*
79211154 ATTATATGAAAT-AAAAATATATT
1 ATTA-ATGAAATAAAAAATACATT
*
79211177 ATTAATTG-TATAAAAAATACATT
1 ATTAA-TGAAATAAAAAATACATT
79211200 ATTAATGAAATAAAAAA
1 ATTAATGAAATAAAAAA
79211217 ATCAACATGT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
22 5 0.15
23 29 0.85
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.35
Consensus pattern (23 bp):
ATTAATGAAATAAAAAATACATT
Found at i:79219445 original size:19 final size:19
Alignment explanation
Indices: 79219421--79219457 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
79219411 CCCCTCCATT
*
79219421 TTTTTTCTTTCCTTCCCTC
1 TTTTTTCCTTCCTTCCCTC
*
79219440 TTTTTTCCTTCTTTCCCT
1 TTTTTTCCTTCCTTCCCT
79219458 TTCTTCTTCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTTTTCCTTCCTTCCCTC
Found at i:79219538 original size:13 final size:13
Alignment explanation
Indices: 79219520--79219544 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79219510 CCCCCTTGCC
79219520 GCCGTCTGACCCT
1 GCCGTCTGACCCT
79219533 GCCGTCTGACCC
1 GCCGTCTGACCC
79219545 CGTTACCCGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.48, G:0.24, T:0.20
Consensus pattern (13 bp):
GCCGTCTGACCCT
Found at i:79231742 original size:48 final size:48
Alignment explanation
Indices: 79231659--79231915 Score: 302
Period size: 48 Copynumber: 5.4 Consensus size: 48
79231649 ATTGAAGTAC
* *
79231659 GGGACATGGCATCAGCCA-CAACATGAGAGCCAGTGTAAGACCATGTCT
1 GGGACATGGCATC-GGCATCGACATGAGAGCCAGTGTAAGACCATGTCT
* * * * *
79231707 GGGACATGGCATCGGCATTGATATGTGTGCTAGTGTAAGACCATGTCT
1 GGGACATGGCATCGGCATCGACATGAGAGCCAGTGTAAGACCATGTCT
*
79231755 GGGACATGGCATCGGCCA-CAACATGAGAGCCAGTGTAAGACCATGTCT
1 GGGACATGGCATCGG-CATCGACATGAGAGCCAGTGTAAGACCATGTCT
* * * * * *
79231803 GGGACATGACATCGGCATTGAGACGAGAGCTAATGTAAGACCATGTCT
1 GGGACATGGCATCGGCATCGACATGAGAGCCAGTGTAAGACCATGTCT
* * * *
79231851 GGGACATGACATCGGCCTCGACATGTGAGCCAGTGTAAGACCATGTTT
1 GGGACATGGCATCGGCATCGACATGAGAGCCAGTGTAAGACCATGTCT
* *
79231899 GGAACATGGCATTGGCA
1 GGGACATGGCATCGGCA
79231916 ATTCACCCTC
Statistics
Matches: 174, Mismatches: 32, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
47 5 0.03
48 167 0.96
49 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.21
Consensus pattern (48 bp):
GGGACATGGCATCGGCATCGACATGAGAGCCAGTGTAAGACCATGTCT
Found at i:79231823 original size:96 final size:96
Alignment explanation
Indices: 79231659--79231915 Score: 388
Period size: 96 Copynumber: 2.7 Consensus size: 96
79231649 ATTGAAGTAC
*
79231659 GGGACATGGCATCAGCCACAACATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 GGGACATGGCATCGGCCACAACATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
* * * * *
79231724 TTGATATGTGTGCTAGTGTAAGACCATGTCT
66 TTGAGACGAGAGCTAATGTAAGACCATGTCT
*
79231755 GGGACATGGCATCGGCCACAACATGAGAGCCAGTGTAAGACCATGTCTGGGACATGACATCGGCA
1 GGGACATGGCATCGGCCACAACATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
79231820 TTGAGACGAGAGCTAATGTAAGACCATGTCT
66 TTGAGACGAGAGCTAATGTAAGACCATGTCT
* * * * * * *
79231851 GGGACATGACATCGGCCTCGACATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGCA
1 GGGACATGGCATCGGCCACAACATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
79231916 ATTCACCCTC
Statistics
Matches: 146, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
96 146 1.00
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.21
Consensus pattern (96 bp):
GGGACATGGCATCGGCCACAACATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
TTGAGACGAGAGCTAATGTAAGACCATGTCT
Found at i:79242776 original size:15 final size:15
Alignment explanation
Indices: 79242734--79242806 Score: 60
Period size: 15 Copynumber: 5.0 Consensus size: 15
79242724 GTAAGCCACC
*
79242734 TGTATACGAACCCC-
1 TGTATGCGAACCCCT
* * *
79242748 TATAGGCTAACCCCT
1 TGTATGCGAACCCCT
*
79242763 TGTATGTGAACCCC-
1 TGTATGCGAACCCCT
* *
79242777 TATAGGCGAACCCCT
1 TGTATGCGAACCCCT
*
79242792 TGTATGCAAACCCCT
1 TGTATGCGAACCCCT
79242807 ATAGGCAAAC
Statistics
Matches: 43, Mismatches: 14, Indels: 3
0.72 0.23 0.05
Matches are distributed among these distances:
14 21 0.49
15 22 0.51
ACGTcount: A:0.26, C:0.33, G:0.16, T:0.25
Consensus pattern (15 bp):
TGTATGCGAACCCCT
Found at i:79242827 original size:13 final size:13
Alignment explanation
Indices: 79242792--79242831 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
79242782 GCGAACCCCT
79242792 TGTATGCAAACCCC
1 TGTATGCAAA-CCC
* *
79242806 TATAGGCAAACCC
1 TGTATGCAAACCC
79242819 TGTATGCAAACCC
1 TGTATGCAAACCC
79242832 ACTATAGGTA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
13 14 0.64
14 8 0.36
ACGTcount: A:0.33, C:0.33, G:0.15, T:0.20
Consensus pattern (13 bp):
TGTATGCAAACCC
Found at i:79242860 original size:14 final size:14
Alignment explanation
Indices: 79242646--79242860 Score: 91
Period size: 14 Copynumber: 15.0 Consensus size: 14
79242636 AGTAAGTAGT
*
79242646 CTATATGTGAACCCC
1 CTATATGCGAA-CCC
* *
79242661 CTATAGGCGAACCA
1 CTATATGCGAACCC
*
79242675 CTATATGTGAACCC
1 CTATATGCGAACCC
* **
79242689 CTATAAGAAAACCTC
1 CTATATGCGAACC-C
*
79242704 CTGTATAG-GAACCC
1 CTATAT-GCGAACCC
*
79242718 TTATA-G-GTAAGCCAC
1 CTATATGCG-AA-CC-C
* *
79242733 CTGTATACGAACCC
1 CTATATGCGAACCC
* *
79242747 CTATAGGCTAACCC
1 CTATATGCGAACCC
* *
79242761 CTTGTATGTGAACCC
1 C-TATATGCGAACCC
*
79242776 CTATAGGCGAACCC
1 CTATATGCGAACCC
* *
79242790 CTTGTATGCAAACCC
1 C-TATATGCGAACCC
* *
79242805 CTATAGGC-AAACC
1 CTATATGCGAACCC
* *
79242818 CTGTATGCAAACCC
1 CTATATGCGAACCC
79242832 ACTATA-G-GTAGACCC
1 -CTATATGCG-A-ACCC
79242847 CTATATGCGAACCC
1 CTATATGCGAACCC
79242861 ATTTATAAAA
Statistics
Matches: 146, Mismatches: 39, Indels: 31
0.68 0.18 0.14
Matches are distributed among these distances:
12 2 0.01
13 12 0.08
14 72 0.49
15 55 0.38
16 4 0.03
17 1 0.01
ACGTcount: A:0.31, C:0.31, G:0.16, T:0.22
Consensus pattern (14 bp):
CTATATGCGAACCC
Found at i:79242861 original size:29 final size:27
Alignment explanation
Indices: 79242649--79242860 Score: 156
Period size: 29 Copynumber: 7.4 Consensus size: 27
79242639 AAGTAGTCTA
* * * *
79242649 TATGTGAACCCCCTATAGGCGAACCACTA
1 TATGCGAA-CCCCTATAGG-TAACCCCTG
* **
79242678 TATGTGAACCCCTATAAGAAAACCTCCTG
1 TATGCGAACCCCTAT-AGGTAACC-CCTG
*
79242707 TATAG-GAACCCTTATAGGTAAGCCACCTG
1 TAT-GCGAACCCCTATAGGTAA-CC-CCTG
*
79242736 TATACGAACCCCTATAGGCTAACCCCTTG
1 TATGCGAACCCCTATAGG-TAACCCC-TG
* *
79242765 TATGTGAACCCCTATAGGCGAACCCCTTG
1 TATGCGAACCCCTATAGG-TAACCCC-TG
* * *
79242794 TATGCAAACCCCTATAGGCAAACCCTG
1 TATGCGAACCCCTATAGGTAACCCCTG
* *
79242821 TATGCAAACCCACTATAGGTAGACCCCTA
1 TATGCGAACCC-CTATAGGTA-ACCCCTG
79242850 TATGCGAACCC
1 TATGCGAACCC
79242861 ATTTATAAAA
Statistics
Matches: 153, Mismatches: 21, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
27 13 0.08
28 30 0.20
29 106 0.69
30 4 0.03
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.22
Consensus pattern (27 bp):
TATGCGAACCCCTATAGGTAACCCCTG
Found at i:79245320 original size:26 final size:26
Alignment explanation
Indices: 79245274--79245326 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
79245264 TCAAACATGC
*
79245274 ATTTAGGTCAATTTAACCCTATGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
* *
79245300 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAAC-CCTAGGGGT
79245326 A
1 A
79245327 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.40
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGGGGT
Found at i:79246681 original size:163 final size:165
Alignment explanation
Indices: 79246361--79246688 Score: 570
Period size: 163 Copynumber: 2.0 Consensus size: 165
79246351 ACTTAAGAAA
* * * *
79246361 AATCTCCATTTCATCATCTTAAAGCATAACATGTTAGCTGATTTTTCCCTTTAACATCTAAGGCA
1 AATCTCCATTTCATCATCTTAAAGCACAACATATTAGCCGATTTTTCCCCTTAACATCTAAGGCA
*
79246426 CATGCATGCTCATTTGTTTGGCTCAACTTCACCTATCTTCCATTTTTTTCATCAAAAGAACATGA
66 CATGCATGCTCATTTGTTTGGCTCAACTTCACATATCTTCCA-TTTTTTCATCAAAAGAACATGA
79246491 AACAACAACCATTTCCTTCATTTTAATTCATGACTT
130 AACAACAACCATTTCCTTCATTTTAATTCATGACTT
* *
79246527 AATCTCCATTTCATCATTTTAAAGCACAACATATTAGCCGATTTTTCCCCTTAGCATCTAA-GCA
1 AATCTCCATTTCATCATCTTAAAGCACAACATATTAGCCGATTTTTCCCCTTAACATCTAAGGCA
79246591 CATGCATGCTCATTTGTTTGGCTCAACTTCACATATCTTCCA-TTTTTCATCAAAAGAACATGAA
66 CATGCATGCTCATTTGTTTGGCTCAACTTCACATATCTTCCATTTTTTCATCAAAAGAACATGAA
79246655 ACAACAACCATTTCCTTCATTTTAATTCATGACT
131 ACAACAACCATTTCCTTCATTTTAATTCATGACT
79246689 AAATGCTCAC
Statistics
Matches: 155, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
163 56 0.36
165 44 0.28
166 55 0.35
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (165 bp):
AATCTCCATTTCATCATCTTAAAGCACAACATATTAGCCGATTTTTCCCCTTAACATCTAAGGCA
CATGCATGCTCATTTGTTTGGCTCAACTTCACATATCTTCCATTTTTTCATCAAAAGAACATGAA
ACAACAACCATTTCCTTCATTTTAATTCATGACTT
Found at i:79247010 original size:26 final size:26
Alignment explanation
Indices: 79246974--79247057 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
79246964 CATGAAATTC
79246974 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
79247000 TTATCTTGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
79247026 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
79247052 TTATCA
1 TTATCA
79247058 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:79255386 original size:19 final size:19
Alignment explanation
Indices: 79255362--79255398 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
79255352 AAGAACAAAG
*
79255362 GAAATCGGACTTGGATCGC
1 GAAATCAGACTTGGATCGC
79255381 GAAATCAGACTTGGATCG
1 GAAATCAGACTTGGATCG
79255399 GAGAAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.30, C:0.19, G:0.30, T:0.22
Consensus pattern (19 bp):
GAAATCAGACTTGGATCGC
Found at i:79255756 original size:16 final size:16
Alignment explanation
Indices: 79255737--79255767 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
79255727 CGGGCTTTGT
79255737 GCCTAGCAGGCTTAGC
1 GCCTAGCAGGCTTAGC
79255753 GCCTAGCAGGCTTAG
1 GCCTAGCAGGCTTAG
79255768 TGCCGGTGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.19
Consensus pattern (16 bp):
GCCTAGCAGGCTTAGC
Found at i:79258163 original size:6 final size:6
Alignment explanation
Indices: 79258152--79258296 Score: 129
Period size: 6 Copynumber: 23.8 Consensus size: 6
79258142 AACCAAAATG
*
79258152 AGAATC AGAATC AGAATC AGAATC AGAATC A-ATATT AGTAA-C AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGA-ATC AG-AATC AGAATC
* * * *
79258200 AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGTATT AGTAA-C
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AG-AATC
* *
79258249 AGAATC AGAATC AGAATC AGAATT ACGTGA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
79258297 GTGAATGCAA
Statistics
Matches: 113, Mismatches: 14, Indels: 24
0.75 0.09 0.16
Matches are distributed among these distances:
5 7 0.06
6 97 0.86
7 6 0.05
8 3 0.03
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:79258233 original size:25 final size:24
Alignment explanation
Indices: 79258199--79258296 Score: 115
Period size: 25 Copynumber: 3.8 Consensus size: 24
79258189 GTAACAGAAT
79258199 CAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATTA-GTGA
*
79258224 CAGAATCAGAATCAGTATTAGTAACAGAA
1 CAGAATCAGAATCAGAATTAGT----G-A
79258253 TCAGAATCAGAATCAGAATTACGTGA
1 -CAGAATCAGAATCAGAATTA-GTGA
79258279 CAGAATCAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
79258297 GTGAATGCAA
Statistics
Matches: 64, Mismatches: 2, Indels: 14
0.80 0.03 0.17
Matches are distributed among these distances:
24 2 0.03
25 37 0.58
26 1 0.02
27 1 0.02
28 1 0.02
29 1 0.02
30 19 0.30
31 2 0.03
ACGTcount: A:0.46, C:0.14, G:0.19, T:0.20
Consensus pattern (24 bp):
CAGAATCAGAATCAGAATTAGTGA
Found at i:79258243 original size:55 final size:55
Alignment explanation
Indices: 79258169--79258293 Score: 232
Period size: 55 Copynumber: 2.3 Consensus size: 55
79258159 GAATCAGAAT
* *
79258169 CAGAATCAGAATCAATATTAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGAATTACGTGA
79258224 CAGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGAATTACGTGA
1 CAGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGAATTACGTGA
79258279 CAGAATCAGAATCAG
1 CAGAATCAGAATCAG
79258294 AATGTGAATG
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
55 68 1.00
ACGTcount: A:0.46, C:0.14, G:0.18, T:0.21
Consensus pattern (55 bp):
CAGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAGAATTACGTGA
Found at i:79258451 original size:27 final size:26
Alignment explanation
Indices: 79258414--79258479 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
79258404 AGCATGGCTG
*
79258414 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
79258440 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
79258467 CCAGAATCAGATA
1 CCAGAA-CAGATA
79258480 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:79258484 original size:27 final size:27
Alignment explanation
Indices: 79258414--79258487 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
79258404 AGCATGGCTG
* *
79258414 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
79258440 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
79258467 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
79258488 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:79258494 original size:27 final size:27
Alignment explanation
Indices: 79258438--79258495 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
79258428 GTGACAGAGT
* * *
79258438 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
79258465 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
79258492 CACC
1 CACC
79258496 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:79258700 original size:22 final size:22
Alignment explanation
Indices: 79258652--79258710 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
79258642 GTAAATATGT
79258652 TTGGCACAAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
79258674 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
79258696 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
79258711 TAATAACGGG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:79258877 original size:27 final size:26
Alignment explanation
Indices: 79258801--79258880 Score: 106
Period size: 27 Copynumber: 3.0 Consensus size: 26
79258791 ATCGGTCAAT
* * *
79258801 AGATATTGTGACAGAGTCACCAAATAC
1 AGATATTGTGGCAGAGCCACCAGA-AC
79258828 AGATATTGTGGCAGAGCCACCAGAAC
1 AGATATTGTGGCAGAGCCACCAGAAC
*
79258854 AGATATTTGTGGCATAGCCACCAGAAC
1 AGATA-TTGTGGCAGAGCCACCAGAAC
79258881 GCTTCCTCCG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 7 0.15
27 41 0.85
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (26 bp):
AGATATTGTGGCAGAGCCACCAGAAC
Found at i:79259109 original size:27 final size:27
Alignment explanation
Indices: 79259079--79259266 Score: 207
Period size: 27 Copynumber: 7.0 Consensus size: 27
79259069 GGGGCAAAAT
* *
79259079 GGTAATTTTAGCCC-ACAAGGGTATCTC
1 GGTAATTCTA-CCCTACAAGGGTATTTC
*
79259106 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
79259133 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
79259160 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
79259187 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
79259214 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*** * *
79259241 AAAAATTCTACCCTATAGGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
79259267 TAGTAATTTC
Statistics
Matches: 141, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
26 3 0.02
27 138 0.98
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:79259223 original size:81 final size:81
Alignment explanation
Indices: 79259097--79259274 Score: 239
Period size: 81 Copynumber: 2.2 Consensus size: 81
79259087 TAGCCCACAA
* * * * * *
79259097 GGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGA
1 GGGTATTTTGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAA
*
79259162 TAATTCTACCCTACAG
66 AAATTCTACCCTACAG
* * * *
79259178 GGGTATTTTGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAA
1 GGGTATTTTGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAA
*
79259243 AAATTCTACCCTATAG
66 AAATTCTACCCTACAG
*
79259259 GGGTATTTTAGTAATT
1 GGGTATTTTGGTAATT
79259275 TCACAATCAA
Statistics
Matches: 84, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 84 1.00
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (81 bp):
GGGTATTTTGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAA
AAATTCTACCCTACAG
Found at i:79259248 original size:54 final size:54
Alignment explanation
Indices: 79259095--79259274 Score: 236
Period size: 54 Copynumber: 3.3 Consensus size: 54
79259085 TTTAGCCCAC
* * * *
79259095 AAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTAC
1 AAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTAT
* *
79259149 AAGGGTATTTC-GATAATTCTACCCTACAGGGGTATTTTGGTAATTCTATCCTAT
1 AAGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTAT
* ***
79259203 AAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAAAAATTCTACCCTAT
1 AAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTAT
* *
79259257 AGGGGTATTTTAGTAATT
1 AAGGGTATTTCAGTAATT
79259275 TCACAATCAA
Statistics
Matches: 111, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
53 1 0.01
54 109 0.98
55 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.37
Consensus pattern (54 bp):
AAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTAT
Found at i:79259309 original size:27 final size:27
Alignment explanation
Indices: 79259279--79259608 Score: 307
Period size: 27 Copynumber: 12.2 Consensus size: 27
79259269 GTAATTTCAC
* *
79259279 AATCAAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGATAATTCTGTA
*
79259306 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGATAATTCTGTA
* *
79259333 AA-CTGAGGGT-AAACCAGTAATTCTATA
1 AATC-GAGGGTAAAACGA-TAATTCTGTA
** * * **
79259360 AATTAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGATAATTCTGTA
* *
79259387 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGATAATTCTGTA
*
79259414 AATCGAGGGTAAAA-TAGTAATTCTGTA
1 AATCGAGGGTAAAACGA-TAATTCTGTA
* *
79259441 AA-CTGAGGGTAAAATGATAATTCTTTA
1 AATC-GAGGGTAAAACGATAATTCTGTA
*
79259468 AATCGAGGGTAAAA-TAGTAATTCTGTA
1 AATCGAGGGTAAAACGA-TAATTCTGTA
*
79259495 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGATAATTCTGTA
* *
79259522 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGATAATTCTGTA
* *
79259549 AATCGAGGGTAAAACGGTAATT-TTTAAA
1 AATCGAGGGTAAAACGATAATTCTGT--A
* *
79259577 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGATAATTCTGTA
79259604 AATCG
1 AATCG
79259609 GGAGTACTTT
Statistics
Matches: 260, Mismatches: 28, Indels: 30
0.82 0.09 0.09
Matches are distributed among these distances:
26 11 0.04
27 217 0.83
28 30 0.12
29 2 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAACGATAATTCTGTA
Found at i:79259381 original size:81 final size:82
Alignment explanation
Indices: 79259283--79259605 Score: 370
Period size: 81 Copynumber: 4.0 Consensus size: 82
79259273 TTTCACAATC
* *
79259283 AAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACGATAATTTTGTAAACT-GAGGGTAAAC
1 AAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACGATAATTCTGTAAACTCGAGGGTAAAA
*
79259347 CAGTAATTCTATAAATT
66 CAGTAATTCTATAAACT
* ** * *
79259364 AAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAATGGTAATTCTGTAAA-TCGAGGGTAAAA
1 AAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACGATAATTCTGTAAACTCGAGGGTAAAA
* *
79259428 TAGTAATTCTGTAAACT
66 CAGTAATTCTATAAACT
* * *
79259445 GAGGGTAAAATGATAATTCTT-TAAATCGAGGGTAAAA-TAGTAATTCTGTAAACT-GAGGGTAA
1 AAGGGTAAAACGATAATT-TTGTAAATCGAGGGTAAAACGA-TAATTCTGTAAACTCGAGGGTAA
* *
79259507 AACGGTAATTCTGTAAACT
64 AACAGTAATTCTATAAACT
* * * * * * *
79259526 GAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGGTAATT-TTTAAAAATCGAGGGTAAA
1 AAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACGATAATTCTGT-AAACTCGAGGGTAAA
*
79259590 ACGGTAATTCTATAAA
65 ACAGTAATTCTATAAA
79259606 TCGGGAGTAC
Statistics
Matches: 209, Mismatches: 25, Indels: 15
0.84 0.10 0.06
Matches are distributed among these distances:
80 4 0.02
81 178 0.85
82 27 0.13
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (82 bp):
AAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACGATAATTCTGTAAACTCGAGGGTAAAA
CAGTAATTCTATAAACT
Found at i:79264533 original size:64 final size:64
Alignment explanation
Indices: 79264449--79264696 Score: 313
Period size: 64 Copynumber: 3.8 Consensus size: 64
79264439 AGACATTATG
79264449 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
79264513 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
* * * * * * *
79264577 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGATACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGGGAT
*
79264642 AA
63 AT
* * * * *
79264644 AT-TGGCTAGGTCACATGGGTGGTATTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGC
79264697 CGAACTATAT
Statistics
Matches: 162, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 89 0.55
66 20 0.12
67 33 0.20
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
Found at i:79271138 original size:40 final size:40
Alignment explanation
Indices: 79271074--79271460 Score: 612
Period size: 40 Copynumber: 9.7 Consensus size: 40
79271064 NNNNNNNNNN
*
79271074 GCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAAT
1 GCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAAT
* * *
79271114 GCTCTTCGGGACTTAGCCCAGATATAACACCAGCACGAAT
1 GCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAAT
* *
79271154 GATGTTCGGGACTTAGCCCGGATATATCACTAGCACGAAT
1 GCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAAT
* * *
79271194 GCTCTTCGGGACTTAGCCCAGATATAACACCAGCACGAAT
1 GCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAAT
* *
79271234 GATGTTCGGGACTTAGCCCGGATATATCACTAGCACGAAT
1 GCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAAT
79271274 GCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAAT
1 GCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAAT
* * *
79271314 GCTCTTCGGGACTTAGCCCGGATAAAACACCAGCACGAAT
1 GCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAAT
* * *
79271354 GCTGTTCGGGACTTAGCCCGGATATAACACCAGCACGAAT
1 GCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAAT
79271394 GCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAAT
1 GCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAAT
*
79271434 GCTCTTCGGGACTTAGCTCGGATATAT
1 GCTCTTCGGGACTTAGCCCGGATATAT
79271461 AACTCTCAAT
Statistics
Matches: 317, Mismatches: 30, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 317 1.00
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
GCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAAT
Found at i:79273003 original size:46 final size:46
Alignment explanation
Indices: 79272949--79273174 Score: 194
Period size: 46 Copynumber: 5.0 Consensus size: 46
79272939 TATATATACA
* *
79272949 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATC
* * * * ** * * *
79272995 TATCTCATACACGTTTTTCA-TTTGGCCA--C-AATATA-TATATA-C
1 CATCTCATACA--TATTTCACATTAGCCATTCGGCTTTACCACATATC
* *
79273037 ACATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 -CATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATC
* ** ** *
79273084 TATCTCATACACGTTTTGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATC
* *
79273130 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
79273175 ATACACTTCC
Statistics
Matches: 137, Mismatches: 34, Indels: 18
0.72 0.18 0.10
Matches are distributed among these distances:
41 5 0.04
42 7 0.05
43 14 0.10
44 3 0.02
45 3 0.02
46 93 0.68
47 7 0.05
48 5 0.04
ACGTcount: A:0.27, C:0.28, G:0.08, T:0.36
Consensus pattern (46 bp):
CATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATC
Found at i:79273023 original size:89 final size:89
Alignment explanation
Indices: 79272917--79273105 Score: 360
Period size: 89 Copynumber: 2.1 Consensus size: 89
79272907 CACCTTCCGC
*
79272917 CGTTTGTCATTTGGCCACAATATATATATACACATCTCATACATATCTCACATTAGCCATTTGGC
1 CGTTTTTCATTTGGCCACAATATATATATACACATCTCATACATATCTCACATTAGCCATTTGGC
79272982 TTTACCACATATCTATCTCATACA
66 TTTACCACATATCTATCTCATACA
79273006 CGTTTTTCATTTGGCCACAATATATATATACACATCTCATACATATCTCACATTAGCCATTTGGC
1 CGTTTTTCATTTGGCCACAATATATATATACACATCTCATACATATCTCACATTAGCCATTTGGC
79273071 TTTACCACATATCTATCTCATACA
66 TTTACCACATATCTATCTCATACA
*
79273095 CGTTTTGCATT
1 CGTTTTTCATT
79273106 AGCCATTCGG
Statistics
Matches: 98, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
89 98 1.00
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.38
Consensus pattern (89 bp):
CGTTTTTCATTTGGCCACAATATATATATACACATCTCATACATATCTCACATTAGCCATTTGGC
TTTACCACATATCTATCTCATACA
Found at i:79273222 original size:47 final size:47
Alignment explanation
Indices: 79273148--79273314 Score: 210
Period size: 47 Copynumber: 3.6 Consensus size: 47
79273138 ACACATTTCG
* * * * * *
79273148 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
*
79273195 CATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * *
79273242 CATTGGCCATTCGGCCTAATCACACAAATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
79273289 CATTTGCCATTCGGCCTTATCTCATA
1 CATTGGCCATTCGGCCTTATCACATA
79273315 ATCACATTGG
Statistics
Matches: 104, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
46 1 0.01
47 103 0.99
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:79273319 original size:30 final size:30
Alignment explanation
Indices: 79273285--79273344 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
79273275 GTTCACATTC
* *
79273285 ATCACATTTGCCATTCGGCCTTATCTCATA
1 ATCACATTGGCCATTCGGCCTTATCACATA
79273315 ATCACATTGGCCATTCGGCCTTATCACATA
1 ATCACATTGGCCATTCGGCCTTATCACATA
79273345 TATGCATGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.25, C:0.30, G:0.12, T:0.33
Consensus pattern (30 bp):
ATCACATTGGCCATTCGGCCTTATCACATA
Found at i:79273330 original size:77 final size:77
Alignment explanation
Indices: 79273238--79273391 Score: 263
Period size: 77 Copynumber: 2.0 Consensus size: 77
79273228 GTTCACATTC
*
79273238 ATCACATTGGCCATTCGGCCTAATCACACAAATGCATGTTCACATTCATCACATTTGCCATTCGG
1 ATCACATTGGCCATTCGGCCTAATCACACAAATGCATGTTCACATTCATCACATTGGCCATTCGG
79273303 CCTTATCTCATA
66 CCTTATCTCATA
* * * *
79273315 ATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCATATTGGCCATTCGG
1 ATCACATTGGCCATTCGGCCTAATCACACAAATGCATGTTCACATTCATCACATTGGCCATTCGG
79273380 CCTTATCTCATA
66 CCTTATCTCATA
79273392 TATGCATGTT
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
77 72 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (77 bp):
ATCACATTGGCCATTCGGCCTAATCACACAAATGCATGTTCACATTCATCACATTGGCCATTCGG
CCTTATCTCATA
Found at i:79273374 original size:47 final size:47
Alignment explanation
Indices: 79273315--79273556 Score: 412
Period size: 47 Copynumber: 5.1 Consensus size: 47
79273305 TTATCTCATA
*
79273315 ATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTC
*
79273362 ATCATATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTC
*
79273409 ATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTC
79273456 ATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTC
** * **
79273503 ATCACATTTTCCATTCGGCCTTATCTCATATATACACATTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTC
79273550 ATCACAT
1 ATCACAT
79273557 AAAATCCTAA
Statistics
Matches: 185, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 185 1.00
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.36
Consensus pattern (47 bp):
ATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTC
Found at i:79273437 original size:22 final size:22
Alignment explanation
Indices: 79273409--79273480 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
79273399 GTTCACATTC
79273409 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
79273431 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
79273455 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
79273478 ATC
1 ATC
79273481 TCATATATGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:79273446 original size:171 final size:171
Alignment explanation
Indices: 79273148--79273485 Score: 543
Period size: 171 Copynumber: 2.0 Consensus size: 171
79273138 ACACATTTCG
* * *
79273148 CATTAGCCATTCGGCTTTACCACATATATACACTTCCACGTTCATCACATTGGCCATTCTGCCTT
1 CATTAGCCATTCGGCCTTACCACATATATACACTTCCACATTCATCACATTGGCCATTCGGCCTT
79273213 ATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTAATCACACAAATGCATGTT
66 ATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTAATCACACAAATGCATGTT
*
79273278 CACATTCATCACATTTGCCATTCGGCCTTATCTCATAATCA
131 CACATTCATCACATTGGCCATTCGGCCTTATCTCATAATCA
* * * * *
79273319 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCATATTGGCCATTCGGCCT
1 CATTAGCCATTCGGCCTTACCACATATATACACT-TCCACATTCATCACATTGGCCATTCGGCCT
* * * *
79273383 TATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGT
65 TATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTAATCACACAAATGCATGT
79273448 TCACATTCATCACATTGGCCATTCGGCCTTATCTCATA
130 TCACATTCATCACATTGGCCATTCGGCCTTATCTCATA
79273486 TATGCATGTT
Statistics
Matches: 153, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
170 1 0.01
171 152 0.99
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (171 bp):
CATTAGCCATTCGGCCTTACCACATATATACACTTCCACATTCATCACATTGGCCATTCGGCCTT
ATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTAATCACACAAATGCATGTT
CACATTCATCACATTGGCCATTCGGCCTTATCTCATAATCA
Found at i:79281196 original size:23 final size:22
Alignment explanation
Indices: 79281170--79281221 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 22
79281160 CAAACACAGG
* *
79281170 AAAATCAGTAAAATATTTTTCGA
1 AAAATAAG-AAAATATTTTCCGA
79281193 AAAATTAAGAAAATATTTTCCGA
1 AAAA-TAAGAAAATATTTTCCGA
79281216 AAAATA
1 AAAATA
79281222 TTTTCTTGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 2 0.08
23 21 0.81
24 3 0.12
ACGTcount: A:0.54, C:0.08, G:0.08, T:0.31
Consensus pattern (22 bp):
AAAATAAGAAAATATTTTCCGA
Found at i:79286794 original size:44 final size:43
Alignment explanation
Indices: 79286731--79286817 Score: 138
Period size: 44 Copynumber: 2.0 Consensus size: 43
79286721 CCACCTGTTG
*
79286731 TTTGAAATAGTCCGATGAGCGAAACAATTAAGCTTTTTAACTGA
1 TTTGAAATAGTCCGATGAGCAAAACAATTAAGC-TTTTAACTGA
* *
79286775 TTTGAAATAGTCCGATGAGCAAAACATTTATGCTTTTAACTGA
1 TTTGAAATAGTCCGATGAGCAAAACAATTAAGCTTTTAACTGA
79286818 AGCAGGCTGC
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
43 10 0.25
44 30 0.75
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (43 bp):
TTTGAAATAGTCCGATGAGCAAAACAATTAAGCTTTTAACTGA
Found at i:79294917 original size:40 final size:40
Alignment explanation
Indices: 79294560--79294903 Score: 511
Period size: 40 Copynumber: 8.7 Consensus size: 40
79294550 TTGAATGATG
* * *
79294560 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
** * *
79294599 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
79294639 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
79294678 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
79294718 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
79294758 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
79294798 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
79294838 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
79294879 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
79294904 AACGAGGAGC
Statistics
Matches: 286, Mismatches: 12, Indels: 13
0.92 0.04 0.04
Matches are distributed among these distances:
39 53 0.19
40 223 0.78
41 10 0.03
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:79307363 original size:55 final size:54
Alignment explanation
Indices: 79307283--79307544 Score: 262
Period size: 55 Copynumber: 4.9 Consensus size: 54
79307273 CGTGGTATCC
*
79307283 TTGCCTTAT-GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCT
1 TTGCCTTATAGAACTCATCAATGCCATGCCTTGGCATGGTCTTACATGGGACCT
* * * *
79307336 TTGCCTTATAGTAACTCATCAATGCCATGTCTTGACTTGGTCTTACATGGTATCC-
1 TTGCCTTATAG-AACTCATCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCT
* *
79307391 TTGCCTTAT-GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGTGACCT
1 TTGCCTTATAGAACTCATCAATGCCATGCCTTGGCATGGTCTTACATGGGACCT
* * * * * ** * ****
79307444 TTTCCTTCTAGTAGCTCATTAATGCCATGTC-TGGACATGACCATACATGATTTCT
1 TTGCCTTATAG-AACTCATCAATGCCATGCCTTGG-CATGGTCTTACATGGGACCT
* * *
79307499 TTACCTTATAAAACTTATCAATGCCATGCCTTGGCATGGTCTTACA
1 TTGCCTTATAGAACTCATCAATGCCATGCCTTGGCATGGTCTTACA
79307545 CGATATCCTT
Statistics
Matches: 167, Mismatches: 34, Indels: 15
0.77 0.16 0.07
Matches are distributed among these distances:
52 2 0.01
53 50 0.30
54 30 0.18
55 83 0.50
56 2 0.01
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.35
Consensus pattern (54 bp):
TTGCCTTATAGAACTCATCAATGCCATGCCTTGGCATGGTCTTACATGGGACCT
Found at i:79307430 original size:53 final size:53
Alignment explanation
Indices: 79307268--79307437 Score: 252
Period size: 53 Copynumber: 3.2 Consensus size: 53
79307258 TTTGGATTAC
*
79307268 TCTTACGTGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGCATGG
1 TCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGCATGG
* * * * *
79307321 TCTTACATGGGA-CCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTGACTTGG
1 TCTTACATGGTATCC-TTGCCTTAT-G-AACTCACCAATGCCATGCCTTGGCATGG
79307376 TCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGCATGG
1 TCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGCATGG
79307429 TCTTACATG
1 TCTTACATG
79307438 TGACCTTTTC
Statistics
Matches: 102, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
52 2 0.02
53 52 0.51
54 2 0.02
55 44 0.43
56 2 0.02
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (53 bp):
TCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGCATGG
Found at i:79307462 original size:108 final size:108
Alignment explanation
Indices: 79307268--79307544 Score: 383
Period size: 108 Copynumber: 2.6 Consensus size: 108
79307258 TTTGGATTAC
*
79307268 TCTTACGTGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA
1 TCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA
* * *
79307333 CCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTGACTTGG
66 CCTTTGCCTTATAGTAACTCATCAATGCCATGTCTGGACATGA
*
79307376 TCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGTGA
1 TCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA
* * * *
79307441 CCTTTTCCTTCTAGTAGCTCATTAATGCCATGTCTGGACATGA
66 CCTTTGCCTTATAGTAACTCATCAATGCCATGTCTGGACATGA
* * * * * * * * *
79307484 CCATACATGATTTCTTTACCTTATAAAACTTATCAATGCCATGCCTTGGCATGGTCTTACA
1 TCTTACATGGTATCCTTGCCTTAT-GAACTCACCAATGCCATGCCTTGGCATGGTCTTACA
79307545 CGATATCCTT
Statistics
Matches: 150, Mismatches: 18, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
108 117 0.78
109 33 0.22
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (108 bp):
TCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA
CCTTTGCCTTATAGTAACTCATCAATGCCATGTCTGGACATGA
Found at i:79313659 original size:55 final size:54
Alignment explanation
Indices: 79313547--79313841 Score: 303
Period size: 55 Copynumber: 5.5 Consensus size: 54
79313537 AGTTTACCAT
* * * * *
79313547 TGCCATGTCTTGACATGGTCTTACGTGGTATCTTT-ACTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTATAGAACTCATCAA
* * * *
79313599 AGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAATAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTAT-AGAACTCATCAA
* * * * *
79313654 TGCCATGTCTTGACATGGTCTTACGTGGTATCTTT-ACTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTATAGAACTCATCAA
* * * *
79313706 AGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAATAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTAT-AGAACTCATCAA
* * * *
79313761 TGCCATGTCTTGACATGGTCTTACATGATTTCC-TTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTTGCCTTATAGAACTCATCAA
* * *
79313815 TTCCATGCCTCGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
79313842 ATATCCTTAT
Statistics
Matches: 197, Mismatches: 39, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
52 67 0.34
53 10 0.05
54 38 0.19
55 80 0.41
56 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTATAGAACTCATCAA
Found at i:79313707 original size:107 final size:107
Alignment explanation
Indices: 79313547--79313841 Score: 482
Period size: 107 Copynumber: 2.7 Consensus size: 107
79313537 AGTTTACCAT
79313547 TGCCATGTCTTGACATGGTCTTACGTGGTATCTTTACTTATGAACTCACCAAAGCCATGCCTTGG
1 TGCCATGTCTTGACATGGTCTTACGTGGTATCTTTACTTATGAACTCACCAAAGCCATGCCTTGG
79313612 CATGGTCTTACATGGGACCTTTGCCTTATAATAACTCATCAA
66 CATGGTCTTACATGGGACCTTTGCCTTATAATAACTCATCAA
79313654 TGCCATGTCTTGACATGGTCTTACGTGGTATCTTTACTTATGAACTCACCAAAGCCATGCCTTGG
1 TGCCATGTCTTGACATGGTCTTACGTGGTATCTTTACTTATGAACTCACCAAAGCCATGCCTTGG
79313719 CATGGTCTTACATGGGACCTTTGCCTTATAATAACTCATCAA
66 CATGGTCTTACATGGGACCTTTGCCTTATAATAACTCATCAA
* * * ** * * ** *
79313761 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATTCCATGCCTC
1 TGCCATGTCTTGACATGGTCTTACGTGGTAT-CTTTACTTAT-GAACTCACCAAAGCCATGCCTT
79313826 GGCATGGTCTTACATG
64 GGCATGGTCTTACATG
79313842 ATATCCTTAT
Statistics
Matches: 176, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
107 135 0.77
108 8 0.05
109 33 0.19
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (107 bp):
TGCCATGTCTTGACATGGTCTTACGTGGTATCTTTACTTATGAACTCACCAAAGCCATGCCTTGG
CATGGTCTTACATGGGACCTTTGCCTTATAATAACTCATCAA
Found at i:79321429 original size:40 final size:40
Alignment explanation
Indices: 79321385--79321646 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
79321375 GCTCCTCGTT
* *
79321385 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
79321425 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
79321465 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
79321504 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
79321543 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
79321582 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
79321623 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
79321647 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:79323975 original size:47 final size:44
Alignment explanation
Indices: 79323670--79323971 Score: 236
Period size: 45 Copynumber: 6.5 Consensus size: 44
79323660 ACTGTTGATT
* *** * *
79323670 AGTGTAAGACATGTCTGAGACATGCATCGGCCACATTATGAGAGCTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTTGA-GATG-TAGC-C
* *
79323717 -GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACG-AGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TTGAGATGTA--GCC
* *
79323764 AGTGTAAGACATGT-TTGGACATGCATCGGCCTTGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CTTGAGATGT-AGCC
* * *
79323809 AGTGTAAGACATATCTGGGACATGCA-CTGGCTACGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCT-TGAGATG-TAGCC
* * * *
79323855 AGTGT-AGACATATCTGGGACATGCACCGGCTACGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCT-TGAGATG-TAGCC
*
79323900 AGTGTAAGATCATGTCTGGGACATGGCATCGACTTGAGATGTGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTTGAGATGT-AGCC
79323947 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
79323972 GCATTGGCAT
Statistics
Matches: 217, Mismatches: 20, Indels: 37
0.79 0.07 0.14
Matches are distributed among these distances:
45 76 0.35
46 48 0.22
47 65 0.30
48 27 0.12
49 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTTGAGATGTAGCC
Found at i:79325141 original size:21 final size:20
Alignment explanation
Indices: 79325117--79325155 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
79325107 TCGAGTTGAT
*
79325117 CACACGGGCGTGTTGCCCTTC
1 CACACGAGCGTG-TGCCCTTC
*
79325138 CACATGAGCGTGTGCCCT
1 CACACGAGCGTGTGCCCT
79325156 ATTTTAAGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.13, C:0.36, G:0.28, T:0.23
Consensus pattern (20 bp):
CACACGAGCGTGTGCCCTTC
Found at i:79329818 original size:21 final size:20
Alignment explanation
Indices: 79329794--79329832 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
79329784 TCGAGTTGAT
*
79329794 CACACGGGCGTGTTGCCCTTC
1 CACACGAGCGTG-TGCCCTTC
*
79329815 CACATGAGCGTGTGCCCT
1 CACACGAGCGTGTGCCCT
79329833 ATTTTAAGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.13, C:0.36, G:0.28, T:0.23
Consensus pattern (20 bp):
CACACGAGCGTGTGCCCTTC
Found at i:79333483 original size:9 final size:9
Alignment explanation
Indices: 79333471--79333527 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
79333461 TTTGATAAAC
79333471 ATGATATGT
1 ATGATATGT
*
79333480 ATGATATGCAC
1 ATGATATG--T
*
79333491 ATGACATGT
1 ATGATATGT
*
79333500 ATGATATGCAC
1 ATGATATG--T
79333511 ATGATATGT
1 ATGATATGT
79333520 ATGATATG
1 ATGATATG
79333528 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:79333494 original size:20 final size:20
Alignment explanation
Indices: 79333469--79333534 Score: 123
Period size: 20 Copynumber: 3.3 Consensus size: 20
79333459 ATTTTGATAA
79333469 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
79333489 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
79333509 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
79333529 ACATGA
1 ACATGA
79333535 GATATAAAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:79333516 original size:11 final size:11
Alignment explanation
Indices: 79333480--79333534 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
79333470 CATGATATGT
79333480 ATGATATGCAC
1 ATGATATGCAC
* *
79333491 ATGACATG--T
1 ATGATATGCAC
79333500 ATGATATGCAC
1 ATGATATGCAC
*
79333511 ATGATATG--T
1 ATGATATGCAC
79333520 ATGATATGCAC
1 ATGATATGCAC
79333531 ATGA
1 ATGA
79333535 GATATAAAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:79336001 original size:39 final size:40
Alignment explanation
Indices: 79335906--79336167 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
79335896 TTGAATGATG
*
79335906 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
79335944 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
79335985 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
79336024 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
79336063 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
79336102 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
79336141 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
79336168 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:79338782 original size:42 final size:42
Alignment explanation
Indices: 79338735--79338838 Score: 172
Period size: 42 Copynumber: 2.5 Consensus size: 42
79338725 TATCGGGATG
* * *
79338735 TGAGATTCATGTAAGACCATGACTGGGACATTTGCATCGATA
1 TGAGATTCGTGTAAGACCATGACTAGGACATTGGCATCGATA
*
79338777 TGAGATTCGTGTAAGACCATGTCTAGGACATTGGCATCGATA
1 TGAGATTCGTGTAAGACCATGACTAGGACATTGGCATCGATA
79338819 TGAGATTCGTGTAAGACCAT
1 TGAGATTCGTGTAAGACCAT
79338839 AGCTAAGCTA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 58 1.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (42 bp):
TGAGATTCGTGTAAGACCATGACTAGGACATTGGCATCGATA
Found at i:79338852 original size:42 final size:42
Alignment explanation
Indices: 79338735--79338860 Score: 159
Period size: 42 Copynumber: 3.0 Consensus size: 42
79338725 TATCGGGATG
* * ** *
79338735 TGAGATTCATGTAAGACCATGACTGGGACATTTGCATCGATA
1 TGAGATTCGTGTAAGACCATGTCTAAGACATTGGCATCGATA
*
79338777 TGAGATTCGTGTAAGACCATGTCTAGGACATTGGCATCGATA
1 TGAGATTCGTGTAAGACCATGTCTAAGACATTGGCATCGATA
79338819 TGAGATTCGTGTAAGACCATAG-CTAAG-CTATTGG-ATCGATA
1 TGAGATTCGTGTAAGACCAT-GTCTAAGAC-ATTGGCATCGATA
79338860 T
1 T
79338861 ACTATAACAT
Statistics
Matches: 77, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
41 9 0.12
42 67 0.87
43 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (42 bp):
TGAGATTCGTGTAAGACCATGTCTAAGACATTGGCATCGATA
Found at i:79339773 original size:21 final size:21
Alignment explanation
Indices: 79339747--79339803 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 21
79339737 ATGGTATAAG
79339747 GTTGATGAATTGGTACATTTT
1 GTTGATGAATTGGTACATTTT
*
79339768 GTTGATGATGAATTGGTATATTTT
1 G-T--TGATGAATTGGTACATTTT
*
79339792 GTGGCATGAATT
1 GTTG-ATGAATT
79339804 ATATGATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
21 2 0.07
22 8 0.27
23 1 0.03
24 19 0.63
ACGTcount: A:0.25, C:0.04, G:0.26, T:0.46
Consensus pattern (21 bp):
GTTGATGAATTGGTACATTTT
Found at i:79346805 original size:26 final size:24
Alignment explanation
Indices: 79346760--79346808 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
79346750 TTAAGATATC
* *
79346760 AATATAAAATTTTAATAAATAAAA
1 AATATAAAATTCTAAAAAATAAAA
79346784 AATATATAAATTGCTAAAAAATAAA
1 AATATA-AAATT-CTAAAAAATAAA
79346809 TTAAAATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.29
25 5 0.24
26 10 0.48
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (24 bp):
AATATAAAATTCTAAAAAATAAAA
Found at i:79347557 original size:11 final size:11
Alignment explanation
Indices: 79347541--79347565 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
79347531 ATACGGCAAA
79347541 AAAAAAAAAAG
1 AAAAAAAAAAG
79347552 AAAAAAAAAAG
1 AAAAAAAAAAG
79347563 AAA
1 AAA
79347566 TTAATTGGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:79349275 original size:7 final size:8
Alignment explanation
Indices: 79349257--79349282 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
79349247 GTATATAACT
79349257 AAAATTTA
1 AAAATTTA
79349265 AAAATTTA
1 AAAATTTA
79349273 AAAATTTA
1 AAAATTTA
79349281 AA
1 AA
79349283 GTACAAAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (8 bp):
AAAATTTA
Found at i:79350227 original size:3 final size:3
Alignment explanation
Indices: 79350221--79350260 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
79350211 CCATGTTTCC
79350221 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT C
79350261 TTCTTTGCTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.35, G:0.00, T:0.33
Consensus pattern (3 bp):
CAT
Found at i:79352367 original size:24 final size:23
Alignment explanation
Indices: 79352340--79352389 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
79352330 ATTTTCAATT
79352340 ATAAAATCA-ATTTTAAATAAATAA
1 ATAAAA-CATATTTTAAAT-AATAA
* *
79352364 ATAATACATATTTTACATAATAA
1 ATAAAACATATTTTAAATAATAA
79352387 ATA
1 ATA
79352390 TTACTTAGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 10 0.43
24 13 0.57
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (23 bp):
ATAAAACATATTTTAAATAATAA
Found at i:79354493 original size:20 final size:21
Alignment explanation
Indices: 79354455--79354493 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
79354445 TTTATGAACT
79354455 TTTTATATTTTTTAATTTTGA
1 TTTTATATTTTTTAATTTTGA
*
79354476 TTTTA-ATTTTTTATTTTT
1 TTTTATATTTTTTAATTTT
79354494 ATAAATTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.77
Consensus pattern (21 bp):
TTTTATATTTTTTAATTTTGA
Found at i:79361429 original size:31 final size:32
Alignment explanation
Indices: 79361364--79361438 Score: 107
Period size: 33 Copynumber: 2.3 Consensus size: 32
79361354 AATATATGTG
79361364 TGGGTCTTGATTATATATAATATATATGCATATA
1 TGGGTCTTG-TTATATATAATATATATG-ATATA
*
79361398 TGGGTCTTGTTTTATATAATATATATG-TATA
1 TGGGTCTTGTTATATATAATATATATGATATA
*
79361429 TGGGTTTTGT
1 TGGGTCTTGT
79361439 AATGCTAGCG
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
31 13 0.33
33 17 0.44
34 9 0.23
ACGTcount: A:0.28, C:0.04, G:0.19, T:0.49
Consensus pattern (32 bp):
TGGGTCTTGTTATATATAATATATATGATATA
Found at i:79362392 original size:17 final size:17
Alignment explanation
Indices: 79362366--79362408 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
79362356 TGTGGGATGG
* *
79362366 ATGAATTATTATATTGT
1 ATGAACTATTATATTGA
79362383 ATGAACTATTATATTGA
1 ATGAACTATTATATTGA
79362400 ATGAACTAT
1 ATGAACTAT
79362409 GATTATGCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.44
Consensus pattern (17 bp):
ATGAACTATTATATTGA
Found at i:79385397 original size:247 final size:248
Alignment explanation
Indices: 79384945--79385441 Score: 978
Period size: 247 Copynumber: 2.0 Consensus size: 248
79384935 CCTTGGATTA
79384945 TCAGTATTACTCGATAATGTTCCTTGCTGTCTATTACAAAACTCCGTAGCTAACTGACCCATTTG
1 TCAGTATTACTCGATAATGTTCCTTGCTGTCTATTACAAAACTCCGTAGCTAACTGACCCATTTG
79385010 GTTTTCTAAATTTTTCAGTGTTGCTGCTTGGCTCTGGATCAAAGTGTTATTTTTTTCCATGAACG
66 GTTTTCTAAATTTTTCAGTGTTGCTGCTTGGCTCTGGATCAAAGTGTTATTTTTTTCCATGAACG
79385075 CTTTCAACAAGTTCTCCAAACTGTTTGATGCCTCAACTTGAGGTGGTTTTGAAGCTTACTGATTA
131 CTTTCAACAAGTTCTCCAAACTGTTTGATGCCTCAACTTGAGGTGGTTTTGAAGCTTACTGATTA
79385140 AACCCTTGAGATTGGTTGGGTCTATACTGCATAAAGTTGTTGTTTGGTCCATT
196 AACCCTTGAGATTGGTTGGGTCTATACTGCATAAAGTTGTTGTTTGGTCCATT
79385193 TCAGTATTACTCGAT-ATGTTCCTTGCTGTCTATTACAAAACTCCGTAGCTAACTGACCCATTTG
1 TCAGTATTACTCGATAATGTTCCTTGCTGTCTATTACAAAACTCCGTAGCTAACTGACCCATTTG
79385257 GTTTTCTAAATTTTTCAGTGTTGCTGCTTGGCTCTGGATCAAAGTGTTATTTTTTTCCATGAACG
66 GTTTTCTAAATTTTTCAGTGTTGCTGCTTGGCTCTGGATCAAAGTGTTATTTTTTTCCATGAACG
*
79385322 CTTTCAACAAGTTCTCCAAACTGTTTGTTGCCTCAACTTGAGGTGGTTTTGAAGCTTACTGATTA
131 CTTTCAACAAGTTCTCCAAACTGTTTGATGCCTCAACTTGAGGTGGTTTTGAAGCTTACTGATTA
79385387 AACCCTTGAGATTGGTTGGGTCTATACTGCATAAAGTTGTTGTTTGGTCCATT
196 AACCCTTGAGATTGGTTGGGTCTATACTGCATAAAGTTGTTGTTTGGTCCATT
79385440 TC
1 TC
79385442 CTTGGTTGCT
Statistics
Matches: 248, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
247 233 0.94
248 15 0.06
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.40
Consensus pattern (248 bp):
TCAGTATTACTCGATAATGTTCCTTGCTGTCTATTACAAAACTCCGTAGCTAACTGACCCATTTG
GTTTTCTAAATTTTTCAGTGTTGCTGCTTGGCTCTGGATCAAAGTGTTATTTTTTTCCATGAACG
CTTTCAACAAGTTCTCCAAACTGTTTGATGCCTCAACTTGAGGTGGTTTTGAAGCTTACTGATTA
AACCCTTGAGATTGGTTGGGTCTATACTGCATAAAGTTGTTGTTTGGTCCATT
Found at i:79397892 original size:438 final size:438
Alignment explanation
Indices: 79397077--79397952 Score: 1752
Period size: 438 Copynumber: 2.0 Consensus size: 438
79397067 TTCAGCGCTG
79397077 CATGAAAGCTATATTCGACGAACTCGTGGAAGATATCATGGAAGTCTTCATGGATGATTTTTCGG
1 CATGAAAGCTATATTCGACGAACTCGTGGAAGATATCATGGAAGTCTTCATGGATGATTTTTCGG
79397142 TATTCGGTAACTCTTTCCATCTCCGCCTTAAAAATTTAAAATGAGTTTTAATAAGATGTGAAGAA
66 TATTCGGTAACTCTTTCCATCTCCGCCTTAAAAATTTAAAATGAGTTTTAATAAGATGTGAAGAA
79397207 ACAAACCTTGTGCTTAACTAGGAGAAATGCCACTTCATGGATCAAGAAGGTATTGTACTAGGGCA
131 ACAAACCTTGTGCTTAACTAGGAGAAATGCCACTTCATGGATCAAGAAGGTATTGTACTAGGGCA
79397272 TAAAATTTCTAGTAAAGGGATTGAGGTGGACAAATCTAAAGTAGAAACAATCGAGAAATTACCAC
196 TAAAATTTCTAGTAAAGGGATTGAGGTGGACAAATCTAAAGTAGAAACAATCGAGAAATTACCAC
79397337 CTCCTAGTTCAGTTAAGTCTATTAAAAGCTTTTTAGGACATGCTTGTTTTTATAGAAGATTCATT
261 CTCCTAGTTCAGTTAAGTCTATTAAAAGCTTTTTAGGACATGCTTGTTTTTATAGAAGATTCATT
79397402 AAGAATTTTTCTAAAATAGCTAAGCCTTTAACTAAATTGCTAGAAAAAGATATACCAATTAACTT
326 AAGAATTTTTCTAAAATAGCTAAGCCTTTAACTAAATTGCTAGAAAAAGATATACCAATTAACTT
79397467 CGATCAGGAATGTTTAGAAGCATTTAATACTTTAAAGGATAAATTAAT
391 CGATCAGGAATGTTTAGAAGCATTTAATACTTTAAAGGATAAATTAAT
79397515 CATGAAAGCTATATTCGACGAACTCGTGGAAGATATCATGGAAGTCTTCATGGATGATTTTTCGG
1 CATGAAAGCTATATTCGACGAACTCGTGGAAGATATCATGGAAGTCTTCATGGATGATTTTTCGG
79397580 TATTCGGTAACTCTTTCCATCTCCGCCTTAAAAATTTAAAATGAGTTTTAATAAGATGTGAAGAA
66 TATTCGGTAACTCTTTCCATCTCCGCCTTAAAAATTTAAAATGAGTTTTAATAAGATGTGAAGAA
79397645 ACAAACCTTGTGCTTAACTAGGAGAAATGCCACTTCATGGATCAAGAAGGTATTGTACTAGGGCA
131 ACAAACCTTGTGCTTAACTAGGAGAAATGCCACTTCATGGATCAAGAAGGTATTGTACTAGGGCA
79397710 TAAAATTTCTAGTAAAGGGATTGAGGTGGACAAATCTAAAGTAGAAACAATCGAGAAATTACCAC
196 TAAAATTTCTAGTAAAGGGATTGAGGTGGACAAATCTAAAGTAGAAACAATCGAGAAATTACCAC
79397775 CTCCTAGTTCAGTTAAGTCTATTAAAAGCTTTTTAGGACATGCTTGTTTTTATAGAAGATTCATT
261 CTCCTAGTTCAGTTAAGTCTATTAAAAGCTTTTTAGGACATGCTTGTTTTTATAGAAGATTCATT
79397840 AAGAATTTTTCTAAAATAGCTAAGCCTTTAACTAAATTGCTAGAAAAAGATATACCAATTAACTT
326 AAGAATTTTTCTAAAATAGCTAAGCCTTTAACTAAATTGCTAGAAAAAGATATACCAATTAACTT
79397905 CGATCAGGAATGTTTAGAAGCATTTAATACTTTAAAGGATAAATTAAT
391 CGATCAGGAATGTTTAGAAGCATTTAATACTTTAAAGGATAAATTAAT
79397953 TAATGCTCCA
Statistics
Matches: 438, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
438 438 1.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (438 bp):
CATGAAAGCTATATTCGACGAACTCGTGGAAGATATCATGGAAGTCTTCATGGATGATTTTTCGG
TATTCGGTAACTCTTTCCATCTCCGCCTTAAAAATTTAAAATGAGTTTTAATAAGATGTGAAGAA
ACAAACCTTGTGCTTAACTAGGAGAAATGCCACTTCATGGATCAAGAAGGTATTGTACTAGGGCA
TAAAATTTCTAGTAAAGGGATTGAGGTGGACAAATCTAAAGTAGAAACAATCGAGAAATTACCAC
CTCCTAGTTCAGTTAAGTCTATTAAAAGCTTTTTAGGACATGCTTGTTTTTATAGAAGATTCATT
AAGAATTTTTCTAAAATAGCTAAGCCTTTAACTAAATTGCTAGAAAAAGATATACCAATTAACTT
CGATCAGGAATGTTTAGAAGCATTTAATACTTTAAAGGATAAATTAAT
Found at i:79399894 original size:12 final size:11
Alignment explanation
Indices: 79399877--79399910 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
79399867 TCCCAGCACC
79399877 ACACGGCCTGTA
1 ACACGGCC-GTA
79399889 ACACGGCCGTA
1 ACACGGCCGTA
79399900 AGCACGGCCGT
1 A-CACGGCCGT
79399911 GTGTACCAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 4 0.19
12 17 0.81
ACGTcount: A:0.24, C:0.35, G:0.29, T:0.12
Consensus pattern (11 bp):
ACACGGCCGTA
Found at i:79423178 original size:39 final size:39
Alignment explanation
Indices: 79423135--79423212 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
79423125 GGTGTTATAA
79423135 CTCTTGAAAAGAGTTATATTTAAAGCCAATAGAGTGAAT
1 CTCTTGAAAAGAGTTATATTTAAAGCCAATAGAGTGAAT
* **
79423174 CTCTTGAAAAGAGTTATATTTCAAGCCTCTAGAGTGAAT
1 CTCTTGAAAAGAGTTATATTTAAAGCCAATAGAGTGAAT
79423213 TAATTATTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (39 bp):
CTCTTGAAAAGAGTTATATTTAAAGCCAATAGAGTGAAT
Found at i:79424083 original size:23 final size:23
Alignment explanation
Indices: 79424057--79424101 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
79424047 GTATGGTATG
*
79424057 TTAGTAGATCTGATTTAATTATA
1 TTAGTAGATATGATTTAATTATA
79424080 TTAGTAGATATGATTTAATTAT
1 TTAGTAGATATGATTTAATTAT
79424102 GAAAAGAGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.36, C:0.02, G:0.13, T:0.49
Consensus pattern (23 bp):
TTAGTAGATATGATTTAATTATA
Found at i:79438159 original size:12 final size:12
Alignment explanation
Indices: 79438142--79438166 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
79438132 TTCTTAATAC
79438142 TTATTTATAGTG
1 TTATTTATAGTG
79438154 TTATTTATAGTG
1 TTATTTATAGTG
79438166 T
1 T
79438167 AACATATAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.16, T:0.60
Consensus pattern (12 bp):
TTATTTATAGTG
Found at i:79445107 original size:25 final size:25
Alignment explanation
Indices: 79445055--79445107 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 25
79445045 AATCGCCCTC
* *
79445055 TTCATCCATCTCCTCACTCTCATTA
1 TTCATCCATCTCATCACTCTCATCA
79445080 TTCATCCATCTCATCACT-TCCATCA
1 TTCATCCATCTCATCACTCT-CATCA
79445105 TTC
1 TTC
79445108 TCTTTGTCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 1 0.04
25 24 0.96
ACGTcount: A:0.21, C:0.40, G:0.00, T:0.40
Consensus pattern (25 bp):
TTCATCCATCTCATCACTCTCATCA
Found at i:79445891 original size:11 final size:11
Alignment explanation
Indices: 79445835--79445894 Score: 68
Period size: 11 Copynumber: 5.5 Consensus size: 11
79445825 ATTAGATAAA
79445835 TATTATTTTAT
1 TATTATTTTAT
* *
79445846 TAATATTTTAA
1 TATTATTTTAT
** *
79445857 TAAGATATT-T
1 TATTATTTTAT
79445867 TATTATTTTAT
1 TATTATTTTAT
79445878 TATTATTTTAT
1 TATTATTTTAT
79445889 TATTAT
1 TATTAT
79445895 ATAAAGAAAG
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
10 6 0.15
11 34 0.85
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (11 bp):
TATTATTTTAT
Found at i:79448978 original size:79 final size:82
Alignment explanation
Indices: 79448867--79449051 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
79448857 GCTACTCGTT
* *
79448867 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
79448930 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
79448947 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
79449010 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
79449027 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
79449052 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:79449051 original size:40 final size:40
Alignment explanation
Indices: 79448848--79449051 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
79448838 CGGAATTTAA
** *
79448848 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
79448888 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
79448928 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
79448967 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
79449007 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
79449047 CCGGA
1 CCGGA
79449052 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:79456878 original size:39 final size:40
Alignment explanation
Indices: 79456833--79457000 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
79456823 CGGGGTTTAG
* * *
79456833 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
79456872 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
79456912 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
79456952 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
79456993 CCGGATAT
1 CCGGATAT
79457001 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:79456983 original size:41 final size:40
Alignment explanation
Indices: 79456856--79457000 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
79456846 CTCGCACAAG
* * * * *
79456856 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
79456896 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
79456936 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
79456977 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
79457001 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:79458790 original size:13 final size:13
Alignment explanation
Indices: 79458774--79458800 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
79458764 CGAATTAGGG
79458774 TCTGAATTTAGCC
1 TCTGAATTTAGCC
79458787 TCTGAATTTAGCC
1 TCTGAATTTAGCC
79458800 T
1 T
79458801 GGACTGGTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.22, G:0.15, T:0.41
Consensus pattern (13 bp):
TCTGAATTTAGCC
Found at i:79459018 original size:46 final size:46
Alignment explanation
Indices: 79458966--79459122 Score: 219
Period size: 46 Copynumber: 3.4 Consensus size: 46
79458956 GCTTTCTGAA
* *
79458966 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
79459012 ATGAAATGTGTAAGACCATGGTTGAAAGATGCCATGGCAGA-GTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCA-ACATGAC
* *
79459058 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGAAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
79459104 A-GAAAATGAGTAAGACCAT
1 ATG-AAATGAGTAAGACCAT
79459123 ACTCGAAAGA
Statistics
Matches: 99, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
45 2 0.02
46 96 0.97
47 1 0.01
ACGTcount: A:0.41, C:0.13, G:0.25, T:0.21
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:79459141 original size:92 final size:92
Alignment explanation
Indices: 79458966--79459142 Score: 239
Period size: 92 Copynumber: 1.9 Consensus size: 92
79458956 GCTTTCTGAA
** * * *
79458966 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGAAACATGACATGAAATGAGTAAGACCAT
** * **
79459031 GGTTGAAAGATGCCATGGCAGAGTGAC
66 ACTCGAAAGACACCATGGCAGAGTGAC
79459058 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGAAACATGACA-GAAAATGAGTAAGACCA
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGAAACATGACATG-AAATGAGTAAGACCA
*
79459122 TACTCGAAAGACACTATGGCA
65 TACTCGAAAGACACCATGGCA
79459143 TCATGTCGAA
Statistics
Matches: 73, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
91 1 0.01
92 72 0.99
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.20
Consensus pattern (92 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGAAACATGACATGAAATGAGTAAGACCAT
ACTCGAAAGACACCATGGCAGAGTGAC
Found at i:79460042 original size:444 final size:443
Alignment explanation
Indices: 79459213--79460099 Score: 1765
Period size: 444 Copynumber: 2.0 Consensus size: 443
79459203 ATATTCAGGT
79459213 GATATGTATTAAATGATAAATGGTTATATGAATTGGTTGTACAAAATGGTTGTGTGAAATGTTTA
1 GATATGTATTAAATGATAAATGGTTATATGAATTGGTTGTACAAAATGGTTGTGTGAAATGTTTA
79459278 CAAGAATTGGTCATATGCAAATATATGTACAAAATAGTTGTATGAAATAATTATAAAGATAGATA
66 CAAGAATTGGTCATATGCAAATATATGTACAAAATAGTTGTATGAAATAATTATAAAGATAGATA
79459343 AACGAAATAAGTATAGGTACATGGAATATAATTTATGTTAAGTTTGATATGAACTATTACCGGAA
131 AACGAAATAAGTATAGGTACATGGAATATAATTTATGTTAAGTTTGATATGAACTATTACCGGAA
79459408 TAAATATACATAAAATATATGGAAATGATAGTGCATGAAATATTGATATAATGAAATGAATGATA
196 TAAATATACATAAAATATATGGAAATGATAGTGCATGAAATATTGATATAATGAAATGAATGATA
79459473 TACACTTATGAAGAAATGGTAAGAGAATGATATGTTTCATGACATGTACATATATGATTATATTT
261 TACACTTATGAAGAAATGGTAAGAGAATGATATGTTTCATGACATGTACATATATGATTATATTT
79459538 GATATGTTGATACAAGGAAATTATGTAAGTTGAGACAATTATTAAACTCAATAGTGACATGTTGA
326 GATATGTTGATACAAGGAAATTATGTAAGTTGAGACAATTATTAAACTCAATAGTGACATGTTGA
79459603 GAAAATAAGTATATCAATGTTGAATTTATATGAAATATATGCAAGTATACTAA
391 GAAAATAAGTATATCAATGTTGAATTTATATGAAATATATGCAAGTATACTAA
79459656 NGATATGTATTAAATGATAAATGGTTATATGAATTGGTTGTACAAAATGGTTGTGTGAAATGTTT
1 -GATATGTATTAAATGATAAATGGTTATATGAATTGGTTGTACAAAATGGTTGTGTGAAATGTTT
79459721 ACAAGAATTGGTCATATGCAAATATATGTACAAAATAGTTGTATGAAATAATTATAAAGATAGAT
65 ACAAGAATTGGTCATATGCAAATATATGTACAAAATAGTTGTATGAAATAATTATAAAGATAGAT
79459786 AAACGAAATAAGTATAGGTACATGGAATATAATTTATGTTAAGTTTGATATGAACTATTACCGGA
130 AAACGAAATAAGTATAGGTACATGGAATATAATTTATGTTAAGTTTGATATGAACTATTACCGGA
79459851 ATAAATATACATAAAATATATGGAAATGATAGTGCATGAAATATTGATATAATGAAATGAATGAT
195 ATAAATATACATAAAATATATGGAAATGATAGTGCATGAAATATTGATATAATGAAATGAATGAT
79459916 ATACACTTATGAAGAAATGGTAAGAGAATGATATGTTTCATGACATGTACATATATGATTATATT
260 ATACACTTATGAAGAAATGGTAAGAGAATGATATGTTTCATGACATGTACATATATGATTATATT
79459981 TGATATGTTGATACAAGGAAATTATGTAAGTTGAGACAATTATTAAACTCAATAGTGACATGTTG
325 TGATATGTTGATACAAGGAAATTATGTAAGTTGAGACAATTATTAAACTCAATAGTGACATGTTG
79460046 AGAAAATAAGTATATCAATGTTGAATTTATATGAAATATATGCAAGTATACTAA
390 AGAAAATAAGTATATCAATGTTGAATTTATATGAAATATATGCAAGTATACTAA
79460100 CAATGTTGTT
Statistics
Matches: 443, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
444 443 1.00
ACGTcount: A:0.43, C:0.06, G:0.18, T:0.34
Consensus pattern (443 bp):
GATATGTATTAAATGATAAATGGTTATATGAATTGGTTGTACAAAATGGTTGTGTGAAATGTTTA
CAAGAATTGGTCATATGCAAATATATGTACAAAATAGTTGTATGAAATAATTATAAAGATAGATA
AACGAAATAAGTATAGGTACATGGAATATAATTTATGTTAAGTTTGATATGAACTATTACCGGAA
TAAATATACATAAAATATATGGAAATGATAGTGCATGAAATATTGATATAATGAAATGAATGATA
TACACTTATGAAGAAATGGTAAGAGAATGATATGTTTCATGACATGTACATATATGATTATATTT
GATATGTTGATACAAGGAAATTATGTAAGTTGAGACAATTATTAAACTCAATAGTGACATGTTGA
GAAAATAAGTATATCAATGTTGAATTTATATGAAATATATGCAAGTATACTAA
Found at i:79461938 original size:26 final size:26
Alignment explanation
Indices: 79461902--79461954 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
79461892 CACCTATGAA
79461902 CATTTTTATGGAATTTTGCTAATTAT
1 CATTTTTATGGAATTTTGCTAATTAT
*
79461928 CATTTTTATGGAATTTTGTTAATTAT
1 CATTTTTATGGAATTTTGCTAATTAT
79461954 C
1 C
79461955 CCTTAAGCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.08, G:0.11, T:0.55
Consensus pattern (26 bp):
CATTTTTATGGAATTTTGCTAATTAT
Found at i:79462764 original size:46 final size:46
Alignment explanation
Indices: 79462659--79462822 Score: 140
Period size: 46 Copynumber: 3.6 Consensus size: 46
79462649 GTGAGTTTGC
*
79462659 CTAGGTT-TAGAGCTCCTGCATATGTTGTGGACTCGAG-ATA-ATAGGA
1 CTAGGTTCTA-AGCTCCTACATATGTTGTGGACTCGAGAATACAT--GA
* * * * *
79462705 ATAAGTTCCAAGCTCCTACATATGTTATGGACTTGAGAATACATGA
1 CTAGGTTCTAAGCTCCTACATATGTTGTGGACTCGAGAATACATGA
* *
79462751 CTAGGTTCTAAGCTCCTGAC--ATGTTGCGGACTCGAGAATACAGGA
1 CTAGGTTCTAAGCTCCT-ACATATGTTGTGGACTCGAGAATACATGA
* * * **
79462796 TTAGGTTCTGAGTTCCTGTATATGTTG
1 CTAGGTTCTAAGCTCCTACATATGTTG
79462823 CAAACTCAAG
Statistics
Matches: 94, Mismatches: 18, Indels: 12
0.76 0.15 0.10
Matches are distributed among these distances:
45 35 0.37
46 51 0.54
47 6 0.06
48 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (46 bp):
CTAGGTTCTAAGCTCCTACATATGTTGTGGACTCGAGAATACATGA
Found at i:79462837 original size:46 final size:45
Alignment explanation
Indices: 79462740--79462838 Score: 117
Period size: 45 Copynumber: 2.2 Consensus size: 45
79462730 TATGGACTTG
* ** *
79462740 AGAATACATGACTAGGTTCTAAGCTCCTGACATGTTGCGGACTCG
1 AGAATACAGGACTAGGTTCTAAGCTCCTGACATGTTGCAAACTCA
* * * *
79462785 AGAATACAGGATTAGGTTCTGAGTTCCTGTATATGTTGCAAACTCA
1 AGAATACAGGACTAGGTTCTAAGCTCCTG-ACATGTTGCAAACTCA
79462831 AGAATACA
1 AGAATACA
79462839 AGAATAATAA
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
45 25 0.56
46 20 0.44
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.28
Consensus pattern (45 bp):
AGAATACAGGACTAGGTTCTAAGCTCCTGACATGTTGCAAACTCA
Found at i:79466874 original size:21 final size:22
Alignment explanation
Indices: 79466848--79466896 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
79466838 TTAATAAAAG
79466848 GGAAAAACTT-GAG-TTTTATAT
1 GGAAAAACTTAG-GTTTTTATAT
* *
79466869 GGAAAAGCTTAGGTTTTTATGT
1 GGAAAAACTTAGGTTTTTATAT
79466891 GGAAAA
1 GGAAAA
79466897 GTCATTTATC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 10 0.42
22 14 0.58
ACGTcount: A:0.37, C:0.04, G:0.24, T:0.35
Consensus pattern (22 bp):
GGAAAAACTTAGGTTTTTATAT
Found at i:79467970 original size:17 final size:17
Alignment explanation
Indices: 79467931--79467970 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
79467921 GAATTCGCTA
*
79467931 TTTGGCGAACTCTAAGG
1 TTTGGCAAACTCTAAGG
*
79467948 -TTGGCAAACTCTAGGG
1 TTTGGCAAACTCTAAGG
79467964 TTTGGCA
1 TTTGGCA
79467971 GACTTTTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (17 bp):
TTTGGCAAACTCTAAGG
Found at i:79472165 original size:45 final size:44
Alignment explanation
Indices: 79472084--79472213 Score: 127
Period size: 44 Copynumber: 2.9 Consensus size: 44
79472074 TTGACTTGAG
* * * * *
79472084 AAACAAGAAAGACCATGGTTGAAATATA-TGAGGGCATTATACCTA
1 AAACGAGAAAGACCATAGTTGAAAGATACT-ATGGCATTA-AACTA
* * *
79472129 AAATGAGAAAGACCATAATTGAAAGATACTATGGCATTAAACTT
1 AAACGAGAAAGACCATAGTTGAAAGATACTATGGCATTAAACTA
* * * *
79472173 GAACGGGTAAGACCCTAGTTGAAAGATACTATGGCATTAAA
1 AAACGAGAAAGACCATAGTTGAAAGATACTATGGCATTAAA
79472214 TGTGAATGAA
Statistics
Matches: 70, Mismatches: 14, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
44 38 0.54
45 31 0.44
46 1 0.01
ACGTcount: A:0.44, C:0.13, G:0.20, T:0.23
Consensus pattern (44 bp):
AAACGAGAAAGACCATAGTTGAAAGATACTATGGCATTAAACTA
Found at i:79472197 original size:44 final size:45
Alignment explanation
Indices: 79472137--79472249 Score: 142
Period size: 44 Copynumber: 2.5 Consensus size: 45
79472127 TAAAATGAGA
* * **
79472137 AAGACCATAATTGAAAGATACTATGGCATTAAACT-TGAACGGGT-
1 AAGACCCTAGTTGAAAGATACTATGGCATTAAA-TGTGAACGAATC
*
79472181 AAGACCCTAGTTGAAAGATACTATGGCATTAAATGTGAATGAATC
1 AAGACCCTAGTTGAAAGATACTATGGCATTAAATGTGAACGAATC
79472226 AAG-CCCATAGTTGAAAGATACTAT
1 AAGACCC-TAGTTGAAAGATACTAT
79472250 TGCACCACTT
Statistics
Matches: 61, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
43 1 0.02
44 40 0.66
45 20 0.33
ACGTcount: A:0.41, C:0.14, G:0.19, T:0.26
Consensus pattern (45 bp):
AAGACCCTAGTTGAAAGATACTATGGCATTAAATGTGAACGAATC
Found at i:79478886 original size:88 final size:86
Alignment explanation
Indices: 79478744--79478903 Score: 221
Period size: 88 Copynumber: 1.8 Consensus size: 86
79478734 AGCTCTTCTT
* * *
79478744 CTTTTTTTGCACTCAATTGAGCACTGAACTTTCAAAATGTATCAAAGAGGCCCTCAAACTTCTTC
1 CTTTTTTTGCACTCAATTGAGCACTGAACTTTCAAAATGTATCAAAAAGACCCTCAAAATTCTTC
79478809 AAGAAAAGCAATTAAACCCCTG
66 AA-AAAAGCAATTAAACCCCTG
* * * * * *
79478831 CTTTTTTTTCACTCAGTTGGGTACTTGAACTTTCAAAATGTATTAAAAAGACCCTCAAAATTTTT
1 CTTTTTTTGCACTCAATTGAGCAC-TGAACTTTCAAAATGTATCAAAAAGACCCTCAAAATTCTT
79478896 CAAAAAAG
65 CAAAAAAG
79478904 TAATGAAGCC
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
87 25 0.40
88 38 0.60
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.33
Consensus pattern (86 bp):
CTTTTTTTGCACTCAATTGAGCACTGAACTTTCAAAATGTATCAAAAAGACCCTCAAAATTCTTC
AAAAAAGCAATTAAACCCCTG
Found at i:79479106 original size:19 final size:22
Alignment explanation
Indices: 79479079--79479122 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
79479069 AAAATTTATA
*
79479079 TTTCTTTAC-ATTTT-TATAAT
1 TTTCTTTACGATTTTATAAAAT
79479099 TTTC-TTACGATTTTATAAAAT
1 TTTCTTTACGATTTTATAAAAT
79479120 TTT
1 TTT
79479123 ATAAATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 4 0.19
20 9 0.43
21 8 0.38
ACGTcount: A:0.27, C:0.09, G:0.02, T:0.61
Consensus pattern (22 bp):
TTTCTTTACGATTTTATAAAAT
Found at i:79479123 original size:29 final size:27
Alignment explanation
Indices: 79479090--79479217 Score: 82
Period size: 29 Copynumber: 4.5 Consensus size: 27
79479080 TTCTTTACAT
79479090 TTTTATAATTTTCTTACGATTTTATAAAA
1 TTTTAT-ATTTT-TTACGATTTTATAAAA
* ** *
79479119 TTTTATAAATTTTTTTA-TATTCCGAT-ATA
1 TTTTAT--A-TTTTTTACGATT-TTATAAAA
* *
79479148 CTTTATATTCTTTTACCATTTTCATAAAA
1 TTTTATATT-TTTTACGATTTT-ATAAAA
**
79479177 TTTTATATTTTTTACGATTTT-TATATT
1 TTTTATATTTTTTACGATTTTATA-AAA
79479204 TTTTATATTTTTTA
1 TTTTATATTTTTTA
79479218 ATATTTTTTT
Statistics
Matches: 78, Mismatches: 13, Indels: 18
0.72 0.12 0.17
Matches are distributed among these distances:
26 4 0.05
27 21 0.27
28 16 0.21
29 26 0.33
30 7 0.09
31 4 0.05
ACGTcount: A:0.29, C:0.08, G:0.02, T:0.61
Consensus pattern (27 bp):
TTTTATATTTTTTACGATTTTATAAAA
Found at i:79479188 original size:27 final size:27
Alignment explanation
Indices: 79479149--79479217 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 27
79479139 TCCGATATAC
79479149 TTTATATTCTTTTACCATTTTCATAAAAT
1 TTTATATT-TTTTACCATTTTCAT-AAAT
* * **
79479178 TTTATATTTTTTACGATTTTTATATTT
1 TTTATATTTTTTACCATTTTCATAAAT
79479205 TTTATATTTTTTA
1 TTTATATTTTTTA
79479218 ATATTTTTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
27 15 0.42
28 13 0.36
29 8 0.22
ACGTcount: A:0.26, C:0.07, G:0.01, T:0.65
Consensus pattern (27 bp):
TTTATATTTTTTACCATTTTCATAAAT
Found at i:79479206 original size:9 final size:9
Alignment explanation
Indices: 79479177--79479226 Score: 66
Period size: 9 Copynumber: 5.4 Consensus size: 9
79479167 TTTCATAAAA
79479177 TTTTATATT
1 TTTTATATT
*
79479186 TTTTACGA-T
1 TTTTA-TATT
79479195 TTTTATATT
1 TTTTATATT
79479204 TTTTATATT
1 TTTTATATT
79479213 TTTTAATATT
1 TTTT-ATATT
79479223 TTTT
1 TTTT
79479227 TAATATTTGA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
8 1 0.03
9 25 0.69
10 10 0.28
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.74
Consensus pattern (9 bp):
TTTTATATT
Found at i:79479216 original size:11 final size:10
Alignment explanation
Indices: 79479177--79479234 Score: 61
Period size: 9 Copynumber: 6.1 Consensus size: 10
79479167 TTTCATAAAA
79479177 TTTT-ATATT
1 TTTTAATATT
**
79479186 TTTTACGA-T
1 TTTTAATATT
79479195 TTTT-ATATT
1 TTTTAATATT
79479204 TTTT-ATATT
1 TTTTAATATT
79479213 TTTTAATATTT
1 TTTTAATA-TT
79479224 TTTTAATATT
1 TTTTAATATT
79479234 T
1 T
79479235 GAATTTTTTA
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
8 1 0.02
9 23 0.56
10 7 0.17
11 10 0.24
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.72
Consensus pattern (10 bp):
TTTTAATATT
Found at i:79479243 original size:19 final size:19
Alignment explanation
Indices: 79479202--79479257 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 19
79479192 GATTTTTATA
* *
79479202 TTTTTTATATTTTTTAATAT
1 TTTTTTA-ATATTTGAATAT
79479222 TTTTTTAATATTTGAAT-T
1 TTTTTTAATATTTGAATAT
*
79479240 TTTTATTAACATTT-AATA
1 TTTT-TTAATATTTGAATA
79479258 ATATTTAGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
18 8 0.26
19 16 0.52
20 7 0.23
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (19 bp):
TTTTTTAATATTTGAATAT
Found at i:79479796 original size:99 final size:102
Alignment explanation
Indices: 79479655--79479841 Score: 263
Period size: 99 Copynumber: 1.9 Consensus size: 102
79479645 AAAAAAGAGC
* * *
79479655 AATTAAGCCCTTGCTTTTTTTTTCAATCATTTTGGTACTTGAACTTTCAAAATACATCAAAAA-A
1 AATTAAGCCCTT-CTTTTTTTTGCAATCAATTGGGTACTTGAACTTTCAAAATACATCAAAAAGA
79479719 GTCTCAAA-CCTTTTCAAAAAAAAAAAGAAGAAGAAGA
65 GTCTCAAATCCTTTTCAAAAAAAAAAAGAAGAAGAAGA
* ** *
79479756 AATTAAGCCCTT-TTTTTTTTGCACTCAATTGGGTACTTGAACTTTCAAAATGTATCAAAAAGAT
1 AATTAAGCCCTTCTTTTTTTTGCAATCAATTGGGTACTTGAACTTTCAAAATACATCAAAAAGAG
**
79479820 TCTCAAATTTTTTTCAAAAAAA
66 TCTCAAATCCTTTTCAAAAAAA
79479842 GCAATGAAGC
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
99 43 0.57
100 8 0.11
101 24 0.32
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.35
Consensus pattern (102 bp):
AATTAAGCCCTTCTTTTTTTTGCAATCAATTGGGTACTTGAACTTTCAAAATACATCAAAAAGAG
TCTCAAATCCTTTTCAAAAAAAAAAAGAAGAAGAAGA
Found at i:79479952 original size:29 final size:29
Alignment explanation
Indices: 79479919--79480006 Score: 92
Period size: 29 Copynumber: 3.0 Consensus size: 29
79479909 ATAAAAATTC
*
79479919 AAATATTAAAATTTTATTAAAAT-TAGAAA
1 AAATATTAAAATTTTATAAAAATATA-AAA
* *
79479948 AAATATAAAAATTGTA-AAAAATATAAAA
1 AAATATTAAAATTTTATAAAAATATAAAA
*
79479976 AAAT-TGTAAATTTTTATAAAAATCATAAAA
1 AAATAT-TAAAATTTTATAAAAAT-ATAAAA
79480006 A
1 A
79480007 TATAAATATA
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
27 1 0.02
28 19 0.39
29 22 0.45
30 7 0.14
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.33
Consensus pattern (29 bp):
AAATATTAAAATTTTATAAAAATATAAAA
Found at i:79479968 original size:20 final size:20
Alignment explanation
Indices: 79479945--79479985 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
79479935 TTAAAATTAG
*
79479945 AAAAAATATAAAAATTGTAA
1 AAAAAATAAAAAAATTGTAA
*
79479965 AAAATATAAAAAAATTGTAA
1 AAAAAATAAAAAAATTGTAA
79479985 A
1 A
79479986 TTTTTATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (20 bp):
AAAAAATAAAAAAATTGTAA
Found at i:79480011 original size:8 final size:8
Alignment explanation
Indices: 79479990--79480029 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
79479980 TGTAAATTTT
79479990 TATAAAAA
1 TATAAAAA
79479998 TCATAAAAA
1 T-ATAAAAA
*
79480007 TATAAATA
1 TATAAAAA
*
79480015 TATAGAAA
1 TATAAAAA
79480023 TATAAAA
1 TATAAAA
79480030 TTTTATAAAG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
8 19 0.70
9 8 0.30
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.28
Consensus pattern (8 bp):
TATAAAAA
Found at i:79480304 original size:36 final size:35
Alignment explanation
Indices: 79480229--79480313 Score: 100
Period size: 36 Copynumber: 2.4 Consensus size: 35
79480219 ACTAGGGGTC
* * *
79480229 TTTAATTATTTTATGATTTTTATAAAATTTTAATTT
1 TTTAATT-TTTTATGATTTTTATAAAAATATAATAT
79480265 TTTAATTTTTTATGATTTTTATAAAAAAATATAA-AT
1 TTTAATTTTTTATGATTTTTAT--AAAAATATAATAT
*
79480301 TTTAAATTTTTAT
1 TTTAATTTTTTAT
79480314 TAAAATTTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
35 15 0.35
36 20 0.47
37 8 0.19
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (35 bp):
TTTAATTTTTTATGATTTTTATAAAAATATAATAT
Found at i:79490316 original size:19 final size:19
Alignment explanation
Indices: 79490289--79490326 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
79490279 ACCGCTGTCA
79490289 CCCACCGTAATCAAATTTG
1 CCCACCGTAATCAAATTTG
*
79490308 CCCATCGTAATCAAATTTG
1 CCCACCGTAATCAAATTTG
79490327 TTATTAACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.29, G:0.11, T:0.29
Consensus pattern (19 bp):
CCCACCGTAATCAAATTTG
Found at i:79492985 original size:17 final size:17
Alignment explanation
Indices: 79492963--79493003 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
79492953 ATTTTGTCAC
79492963 ATTAGCCCTAATTTTTA
1 ATTAGCCCTAATTTTTA
79492980 ATTAGCCCTAATTTTTA
1 ATTAGCCCTAATTTTTA
79492997 ATTAGCC
1 ATTAGCC
79493004 ATCATTAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.07, T:0.44
Consensus pattern (17 bp):
ATTAGCCCTAATTTTTA
Found at i:79495834 original size:23 final size:23
Alignment explanation
Indices: 79495804--79495861 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
79495794 GAGCTGATGG
*** *
79495804 ACAGTAAGCTCTATTGAGCTGAA
1 ACAGTAAGCTCTAACCAGCTAAA
79495827 ACAGTAAGCTCTAACCAGCTAAA
1 ACAGTAAGCTCTAACCAGCTAAA
79495850 ACAGTAAGCTCT
1 ACAGTAAGCTCT
79495862 TATGAGTTGA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.22
Consensus pattern (23 bp):
ACAGTAAGCTCTAACCAGCTAAA
Found at i:79503473 original size:23 final size:23
Alignment explanation
Indices: 79503442--79503521 Score: 126
Period size: 23 Copynumber: 3.5 Consensus size: 23
79503432 AGCTGATGGG
79503442 CAGTAAGCTCT-ATTGACCTGAAA
1 CAGTAAGCTCTGA-TGACCTGAAA
*
79503465 TAGTAAGCTCTGATGACCTGAAA
1 CAGTAAGCTCTGATGACCTGAAA
*
79503488 CAGTAAGCTCTGACGACCTGAAA
1 CAGTAAGCTCTGATGACCTGAAA
79503511 CAGTAAGCTCT
1 CAGTAAGCTCT
79503522 TACAAGCTGA
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
23 52 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.24
Consensus pattern (23 bp):
CAGTAAGCTCTGATGACCTGAAA
Found at i:79509485 original size:25 final size:25
Alignment explanation
Indices: 79509451--79509516 Score: 96
Period size: 25 Copynumber: 2.6 Consensus size: 25
79509441 CTTGCACATT
* **
79509451 TATGCTCACACGAGTTGTGTATCGG
1 TATGCTCACACGAGCTGTAAATCGG
*
79509476 TATGCTCACACAAGCTGTAAATCGG
1 TATGCTCACACGAGCTGTAAATCGG
79509501 TATGCTCACACGAGCT
1 TATGCTCACACGAGCT
79509517 ATGAAAATAG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (25 bp):
TATGCTCACACGAGCTGTAAATCGG
Found at i:79519989 original size:15 final size:15
Alignment explanation
Indices: 79519969--79519998 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
79519959 TAAGCCTAAG
*
79519969 AAAATAGAACTAGAA
1 AAAATAGAAATAGAA
79519984 AAAATAGAAATAGAA
1 AAAATAGAAATAGAA
79519999 TTTTTTAGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.03, G:0.13, T:0.13
Consensus pattern (15 bp):
AAAATAGAAATAGAA
Found at i:79526567 original size:30 final size:30
Alignment explanation
Indices: 79526533--79526602 Score: 131
Period size: 30 Copynumber: 2.3 Consensus size: 30
79526523 ATGGGAGGGA
*
79526533 ACCGTGTGTCAAACACGGCCTAGACACACG
1 ACCGTGTGTCAAACACAGCCTAGACACACG
79526563 ACCGTGTGTCAAACACAGCCTAGACACACG
1 ACCGTGTGTCAAACACAGCCTAGACACACG
79526593 ACCGTGTGTC
1 ACCGTGTGTC
79526603 CAACCATGTG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.29, C:0.33, G:0.23, T:0.16
Consensus pattern (30 bp):
ACCGTGTGTCAAACACAGCCTAGACACACG
Found at i:79531150 original size:30 final size:30
Alignment explanation
Indices: 79531114--79531176 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
79531104 GAAAGCCAGA
* * *
79531114 ATAAAGAAATCCATGATAGAGGAATCCAAG
1 ATAAAGAAATCCAAGATACAGAAATCCAAG
* *
79531144 ATAAAGATATCCAAGGTACAGAAATCCAAG
1 ATAAAGAAATCCAAGATACAGAAATCCAAG
79531174 ATA
1 ATA
79531177 CCATATCATA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.51, C:0.14, G:0.17, T:0.17
Consensus pattern (30 bp):
ATAAAGAAATCCAAGATACAGAAATCCAAG
Found at i:79531155 original size:15 final size:15
Alignment explanation
Indices: 79531114--79531176 Score: 72
Period size: 15 Copynumber: 4.2 Consensus size: 15
79531104 GAAAGCCAGA
*
79531114 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
* *
79531129 ATAGAGGAATCCAAG
1 ATAAAGAAATCCAAG
*
79531144 ATAAAGATATCCAAG
1 ATAAAGAAATCCAAG
* *
79531159 GTACAGAAATCCAAG
1 ATAAAGAAATCCAAG
79531174 ATA
1 ATA
79531177 CCATATCATA
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 38 1.00
ACGTcount: A:0.51, C:0.14, G:0.17, T:0.17
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:79532757 original size:30 final size:30
Alignment explanation
Indices: 79532721--79532819 Score: 171
Period size: 30 Copynumber: 3.3 Consensus size: 30
79532711 TGGGAGGGAA
79532721 TCGTGTGTCACACATGGCCTAGACACTAGG
1 TCGTGTGTCACACATGGCCTAGACACTAGG
*
79532751 TCGTGTGTCACTCATGGCCTAGACACTAGG
1 TCGTGTGTCACACATGGCCTAGACACTAGG
* *
79532781 TCGTGTGTCACACATGGCCTAAACATTAGG
1 TCGTGTGTCACACATGGCCTAGACACTAGG
79532811 TCGTGTGTC
1 TCGTGTGTC
79532820 TAACCATGTG
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 65 1.00
ACGTcount: A:0.21, C:0.25, G:0.26, T:0.27
Consensus pattern (30 bp):
TCGTGTGTCACACATGGCCTAGACACTAGG
Found at i:79533173 original size:37 final size:37
Alignment explanation
Indices: 79533109--79533182 Score: 91
Period size: 37 Copynumber: 2.0 Consensus size: 37
79533099 TTACAAGCCA
79533109 AAATCATTATAAGCCACATCTCATGGCTACAT-ACAAC
1 AAATCATTATAAGCCACATCTCATGGCTA-ATCACAAC
*
79533146 AAATCATTATAAGCCA-ATACAT-TTGGCTAATCACAAC
1 AAATCATTATAAGCCACAT-C-TCATGGCTAATCACAAC
79533183 GACATCGATC
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
36 4 0.12
37 28 0.85
38 1 0.03
ACGTcount: A:0.42, C:0.24, G:0.08, T:0.26
Consensus pattern (37 bp):
AAATCATTATAAGCCACATCTCATGGCTAATCACAAC
Found at i:79533541 original size:9 final size:9
Alignment explanation
Indices: 79533527--79533570 Score: 61
Period size: 9 Copynumber: 4.7 Consensus size: 9
79533517 AATATCTGTT
79533527 AATTTTCAA
1 AATTTTCAA
*
79533536 AATTTTTAA
1 AATTTTCAA
79533545 AATTTTCATAA
1 AATTTTC--AA
79533556 AATTTTCAA
1 AATTTTCAA
79533565 AATTTT
1 AATTTT
79533571 TTCCCTAGCC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
9 22 0.71
11 9 0.29
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (9 bp):
AATTTTCAA
Found at i:79533573 original size:11 final size:10
Alignment explanation
Indices: 79533529--79533571 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
79533519 TATCTGTTAA
79533529 TTTTCAAAAT
1 TTTTCAAAAT
79533539 TTTT-AAAA-
1 TTTTCAAAAT
*
79533547 TTTTCATAAAA
1 TTTTCA-AAAT
79533558 TTTTCAAAAT
1 TTTTCAAAAT
79533568 TTTT
1 TTTT
79533572 TCCCTAGCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
8 4 0.14
9 5 0.17
10 14 0.48
11 6 0.21
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (10 bp):
TTTTCAAAAT
Found at i:79539310 original size:55 final size:55
Alignment explanation
Indices: 79539241--79539374 Score: 151
Period size: 55 Copynumber: 2.4 Consensus size: 55
79539231 GTGGACAATC
* * *
79539241 CTGCCAAAACAACACGGGCGTGCAACACGCCCGTGTCTATAAGCCGTGGTTGAAA
1 CTGCCAAAAAAACACGGGCGTGCAACACGCCCGTGTCTAGAAGCCGTGGTCGAAA
* *** * * *
79539296 CTGCCAAAAAAACACGGGCATTTGACATGCCGGTGTCTAGAAGCCGTGGTCGATA
1 CTGCCAAAAAAACACGGGCGTGCAACACGCCCGTGTCTAGAAGCCGTGGTCGAAA
* **
79539351 CTGTCAAATGAACACGGGCGTGCA
1 CTGCCAAAAAAACACGGGCGTGCA
79539375 CATATATACA
Statistics
Matches: 62, Mismatches: 17, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
55 62 1.00
ACGTcount: A:0.29, C:0.26, G:0.27, T:0.18
Consensus pattern (55 bp):
CTGCCAAAAAAACACGGGCGTGCAACACGCCCGTGTCTAGAAGCCGTGGTCGAAA
Done.