Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 244 of 276
Found at i:80771453 original size:18 final size:18
Alignment explanation
Indices: 80771432--80771466 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
80771422 TAACTTAAAC
* *
80771432 ATGGTAAGTTTTTTAAGA
1 ATGGCAAGTTTTCTAAGA
80771450 ATGGCAAGTTTTCTAAG
1 ATGGCAAGTTTTCTAAG
80771467 CAAGCAATGC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.06, G:0.23, T:0.40
Consensus pattern (18 bp):
ATGGCAAGTTTTCTAAGA
Found at i:80771993 original size:21 final size:21
Alignment explanation
Indices: 80771954--80771993 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
80771944 TGTCAAATTT
** *
80771954 AGGTATCGATATCATTTATCG
1 AGGTATCGATAAAAGTTATCG
80771975 AGGTATCGATAAAAGTTAT
1 AGGTATCGATAAAAGTTAT
80771994 AAATTTATTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.10, G:0.20, T:0.35
Consensus pattern (21 bp):
AGGTATCGATAAAAGTTATCG
Found at i:80776437 original size:60 final size:59
Alignment explanation
Indices: 80776316--80776430 Score: 151
Period size: 60 Copynumber: 1.9 Consensus size: 59
80776306 ACCTTGTTCT
* * * *
80776316 TTCCCTGATCTAAATCCATATTTCGCCTTTTTTGATCTAAATAATATCAAATTTAGATTA
1 TTCCCTAATCTAAATCCATATTTCACCTTTCTTGATCTAAATAATA-CAAAATTAGATTA
*
80776376 TTCCCTAATCTAAATCCGTATTTCACCTTTCTTGATCTAAATGTAATA-AAAATTA
1 TTCCCTAATCTAAATCCATATTTCACCTTTCTTGATCTAAA--TAATACAAAATTA
80776431 ACTTATTTAA
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
60 43 0.90
62 5 0.10
ACGTcount: A:0.33, C:0.19, G:0.06, T:0.42
Consensus pattern (59 bp):
TTCCCTAATCTAAATCCATATTTCACCTTTCTTGATCTAAATAATACAAAATTAGATTA
Found at i:80777945 original size:43 final size:42
Alignment explanation
Indices: 80777898--80778051 Score: 152
Period size: 43 Copynumber: 3.6 Consensus size: 42
80777888 GTGTTCTAGA
* *
80777898 GTAAGACCACGTCTAGGATGTTGGCATCGATATGTGATTACGT
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATT-CGT
** * * *
80777941 GTAAGACCTTGTCTGGTACATTGGCATC-ATATTTGATTCGT
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTCGT
* **
80777982 GTAAGACC-CTATCTGGGACAG-TGGCATCGATATGTGATTGCAC
1 GTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATGTGATT-CGT
*
80778025 GTAAGACTACGTCTGGGACGTTGGCAT
1 GTAAGACCACGTCTGGGACGTTGGCAT
80778052 TGTACGATAT
Statistics
Matches: 89, Mismatches: 16, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
41 25 0.28
42 19 0.21
43 44 0.49
44 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (42 bp):
GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTCGT
Found at i:80777997 original size:41 final size:43
Alignment explanation
Indices: 80777918--80778020 Score: 147
Period size: 41 Copynumber: 2.4 Consensus size: 43
80777908 GTCTAGGATG
* * *
80777918 TTGGCATCGATATGTGATTACGTGTAAGACCTTGTCTGGTACA
1 TTGGCATCGATATGTGATTACGTGTAAGACCCTATCTGGGACA
*
80777961 TTGGCATC-ATATTTGATT-CGTGTAAGACCCTATCTGGGACA
1 TTGGCATCGATATGTGATTACGTGTAAGACCCTATCTGGGACA
*
80778002 GTGGCATCGATATGTGATT
1 TTGGCATCGATATGTGATT
80778021 GCACGTAAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
41 27 0.51
42 18 0.34
43 8 0.15
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (43 bp):
TTGGCATCGATATGTGATTACGTGTAAGACCCTATCTGGGACA
Found at i:80780483 original size:10 final size:10
Alignment explanation
Indices: 80780470--80780540 Score: 53
Period size: 10 Copynumber: 7.4 Consensus size: 10
80780460 AAATTCTTTA
80780470 AAAAAATTAT
1 AAAAAATTAT
*
80780480 AAAAAAATAT
1 AAAAAATTAT
80780490 AAAAAGTATT-T
1 AAAAA--ATTAT
*
80780501 AAAAAATTCT
1 AAAAAATTAT
80780511 -AAAAATT-T
1 AAAAAATTAT
*
80780519 TAAAAA-TA-
1 AAAAAATTAT
*
80780527 AAAAAAATAT
1 AAAAAATTAT
80780537 AAAA
1 AAAA
80780541 TTACAAAAGC
Statistics
Matches: 51, Mismatches: 3, Indels: 14
0.75 0.04 0.21
Matches are distributed among these distances:
8 7 0.14
9 17 0.33
10 19 0.37
11 6 0.12
12 2 0.04
ACGTcount: A:0.70, C:0.01, G:0.01, T:0.27
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:80780504 original size:20 final size:19
Alignment explanation
Indices: 80780471--80780524 Score: 63
Period size: 21 Copynumber: 2.7 Consensus size: 19
80780461 AATTCTTTAA
* *
80780471 AAAAATTATAAAAAAATAT
1 AAAAATTTTAAAAAATTAT
*
80780490 AAAAAGTATTTAAAAAATTCT
1 AAAAA-T-TTTAAAAAATTAT
80780511 AAAAATTTTAAAAA
1 AAAAATTTTAAAAA
80780525 TAAAAAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 13 0.43
20 2 0.07
21 15 0.50
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (19 bp):
AAAAATTTTAAAAAATTAT
Found at i:80780587 original size:28 final size:29
Alignment explanation
Indices: 80780567--80780625 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 29
80780557 AAAATATAAC
80780567 AATTTTAATAAAATTTAAAAAA-ATTAGA
1 AATTTTAATAAAATTTAAAAAATATTAGA
** *
80780595 AATTTTAATATTATTTAAAAAAT-TTATA
1 AATTTTAATAAAATTTAAAAAATATTAGA
80780623 AAT
1 AAT
80780626 CATATTTACT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (29 bp):
AATTTTAATAAAATTTAAAAAATATTAGA
Found at i:80780934 original size:19 final size:20
Alignment explanation
Indices: 80780912--80780949 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
80780902 TAAATAATTT
80780912 AAATAATTTTATAA-TTTTA
1 AAATAATTTTATAAGTTTTA
80780931 AAATAATTTTATAAGTTTT
1 AAATAATTTTATAAGTTTT
80780950 CTAATTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (20 bp):
AAATAATTTTATAAGTTTTA
Found at i:80780937 original size:28 final size:27
Alignment explanation
Indices: 80780883--80780957 Score: 84
Period size: 28 Copynumber: 2.8 Consensus size: 27
80780873 TTTTATTAAA
*
80780883 AATTT-AT-ATTTTAT-ATTTTTAAAT
1 AATTTAATAATTTTATAATTTTAAAAT
80780907 AATTTAAATAATTTTATAATTTTAAAAT
1 AATTT-AATAATTTTATAATTTTAAAAT
* *
80780935 AATTTTATAAGTTTTCTAATTTT
1 AATTTAATAA-TTTTATAATTTT
80780958 TTTTTGTAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
24 5 0.12
26 2 0.05
27 11 0.26
28 25 0.58
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.57
Consensus pattern (27 bp):
AATTTAATAATTTTATAATTTTAAAAT
Found at i:80780938 original size:11 final size:10
Alignment explanation
Indices: 80780899--80780941 Score: 56
Period size: 9 Copynumber: 4.5 Consensus size: 10
80780889 TATTTTATAT
80780899 TTTTAAATAA
1 TTTTAAATAA
80780909 -TTTAAATAA
1 TTTTAAATAA
80780918 TTTT--ATAA
1 TTTTAAATAA
80780926 TTTTAAAATAA
1 TTTT-AAATAA
80780937 TTTTA
1 TTTTA
80780942 TAAGTTTTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
8 8 0.28
9 9 0.31
10 4 0.14
11 8 0.28
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (10 bp):
TTTTAAATAA
Found at i:80781676 original size:29 final size:30
Alignment explanation
Indices: 80781642--80781707 Score: 100
Period size: 29 Copynumber: 2.2 Consensus size: 30
80781632 TAATTAATTT
*
80781642 TAAAAATTATAAAAATAATTTTTAAAAA-TA
1 TAAAAATTATAAAAA-AATATTTAAAAAGTA
80781672 -AAAAATTATAAAAAAATATTTAAAAAGTA
1 TAAAAATTATAAAAAAATATTTAAAAAGTA
80781701 TAAAAAT
1 TAAAAAT
80781708 ATTTTTTAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
28 11 0.33
29 16 0.48
30 6 0.18
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.32
Consensus pattern (30 bp):
TAAAAATTATAAAAAAATATTTAAAAAGTA
Found at i:80781896 original size:11 final size:11
Alignment explanation
Indices: 80781880--80781918 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
80781870 ATGCCAATAG
80781880 AAAAAAGAAAA
1 AAAAAAGAAAA
80781891 AAAAAAG-AAA
1 AAAAAAGAAAA
*
80781901 AGAAAAGAAAA
1 AAAAAAGAAAA
80781912 GAAAAAA
1 -AAAAAA
80781919 AGGAGATACA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
10 9 0.38
11 10 0.42
12 5 0.21
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (11 bp):
AAAAAAGAAAA
Found at i:80782736 original size:29 final size:29
Alignment explanation
Indices: 80782703--80782820 Score: 236
Period size: 29 Copynumber: 4.1 Consensus size: 29
80782693 ATATAAAAAA
80782703 ATTAAAGTCCTAAAGTAATCAAATTTTTT
1 ATTAAAGTCCTAAAGTAATCAAATTTTTT
80782732 ATTAAAGTCCTAAAGTAATCAAATTTTTT
1 ATTAAAGTCCTAAAGTAATCAAATTTTTT
80782761 ATTAAAGTCCTAAAGTAATCAAATTTTTT
1 ATTAAAGTCCTAAAGTAATCAAATTTTTT
80782790 ATTAAAGTCCTAAAGTAATCAAATTTTTT
1 ATTAAAGTCCTAAAGTAATCAAATTTTTT
80782819 AT
1 AT
80782821 CCTAATAGGT
Statistics
Matches: 89, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 89 1.00
ACGTcount: A:0.42, C:0.10, G:0.07, T:0.42
Consensus pattern (29 bp):
ATTAAAGTCCTAAAGTAATCAAATTTTTT
Found at i:80784981 original size:28 final size:28
Alignment explanation
Indices: 80784948--80785042 Score: 110
Period size: 28 Copynumber: 3.5 Consensus size: 28
80784938 GGGAAATTTC
*
80784948 TCACTTAGCATAATGCCATGGATTTATT
1 TCACTTAGCACAATGCCATGGATTTATT
* *
80784976 TCACTTAGCACATTGCCATGGACTTATT
1 TCACTTAGCACAATGCCATGGATTTATT
80785004 TCACTTAG----ATGCCATGG-TCTTATT
1 TCACTTAGCACAATGCCATGGAT-TTATT
*
80785028 TCATTTAGCACAATG
1 TCACTTAGCACAATG
80785043 TCGTATCCTA
Statistics
Matches: 56, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
24 20 0.36
28 36 0.64
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (28 bp):
TCACTTAGCACAATGCCATGGATTTATT
Found at i:80785025 original size:24 final size:25
Alignment explanation
Indices: 80784960--80785037 Score: 88
Period size: 24 Copynumber: 3.0 Consensus size: 25
80784950 ACTTAGCATA
80784960 ATGCCATGGAT-TTATTTCACTTAGCAC
1 ATGCCATGG-TCTTATTTCACTTAG--C
*
80784987 ATTGCCATGGACTTATTTCACTTAG-
1 A-TGCCATGGTCTTATTTCACTTAGC
*
80785012 ATGCCATGGTCTTATTTCATTTAGC
1 ATGCCATGGTCTTATTTCACTTAGC
80785037 A
1 A
80785038 CAATGTCGTA
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
24 21 0.47
25 2 0.04
27 1 0.02
28 21 0.47
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.40
Consensus pattern (25 bp):
ATGCCATGGTCTTATTTCACTTAGC
Found at i:80789468 original size:30 final size:30
Alignment explanation
Indices: 80789433--80789504 Score: 117
Period size: 30 Copynumber: 2.4 Consensus size: 30
80789423 ACACATGGGT
*
80789433 AGAGACACGGCCGTGTGCCTCGATCGTGTG
1 AGAGACACGGCCGTGTACCTCGATCGTGTG
*
80789463 AGAGACACGGCCGTGTATCTCGATCGTGTG
1 AGAGACACGGCCGTGTACCTCGATCGTGTG
*
80789493 AGAGGCACGGCC
1 AGAGACACGGCC
80789505 TTAGAACATG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.19, C:0.26, G:0.36, T:0.18
Consensus pattern (30 bp):
AGAGACACGGCCGTGTACCTCGATCGTGTG
Found at i:80791381 original size:9 final size:8
Alignment explanation
Indices: 80791350--80791383 Score: 59
Period size: 8 Copynumber: 4.1 Consensus size: 8
80791340 AGTCCCTAAT
80791350 TCACAAAA
1 TCACAAAA
80791358 TCACAAAA
1 TCACAAAA
80791366 TCACAAAA
1 TCACAAAA
80791374 TACACAAAA
1 T-CACAAAA
80791383 T
1 T
80791384 TTGCTTGTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 17 0.68
9 8 0.32
ACGTcount: A:0.62, C:0.24, G:0.00, T:0.15
Consensus pattern (8 bp):
TCACAAAA
Found at i:80803599 original size:30 final size:30
Alignment explanation
Indices: 80803565--80803627 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
80803555 CTCGATCGGA
* * *
80803565 TGTGACATACGGCCAGGTAACACAGCCATG
1 TGTGACACACGGCCAAGTAACACAACCATG
* *
80803595 TGTGACACACGGTCAAGTAACACAACCGTG
1 TGTGACACACGGCCAAGTAACACAACCATG
80803625 TGT
1 TGT
80803628 CCCCTGATAC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.25, G:0.25, T:0.19
Consensus pattern (30 bp):
TGTGACACACGGCCAAGTAACACAACCATG
Found at i:80806527 original size:20 final size:21
Alignment explanation
Indices: 80806493--80806546 Score: 85
Period size: 20 Copynumber: 2.6 Consensus size: 21
80806483 TCATACAATG
80806493 TGTTAGTAC-GATTTCATATTC
1 TGTT-GTACTGATTTCATATTC
80806514 TGTTGTA-TGATTTCATATTC
1 TGTTGTACTGATTTCATATTC
80806534 TGTTGTACTGATT
1 TGTTGTACTGATT
80806547 GGCGAAGTGG
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 22 0.71
21 9 0.29
ACGTcount: A:0.20, C:0.11, G:0.17, T:0.52
Consensus pattern (21 bp):
TGTTGTACTGATTTCATATTC
Found at i:80810897 original size:20 final size:19
Alignment explanation
Indices: 80810868--80810910 Score: 70
Period size: 20 Copynumber: 2.3 Consensus size: 19
80810858 TTTATTCTCA
80810868 TTTTTT-CTTTTCTTTCTT
1 TTTTTTCCTTTTCTTTCTT
80810886 TCTTTTTCCTTTTCTTTCTT
1 T-TTTTTCCTTTTCTTTCTT
80810906 TTTTT
1 TTTTT
80810911 AAATGGAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 1 0.04
19 9 0.39
20 13 0.57
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (19 bp):
TTTTTTCCTTTTCTTTCTT
Found at i:80819856 original size:30 final size:30
Alignment explanation
Indices: 80819822--80819895 Score: 148
Period size: 30 Copynumber: 2.5 Consensus size: 30
80819812 GTCTAGGGGT
80819822 AAAATGGTCATTTTGTCAAGGTCGAGCGGC
1 AAAATGGTCATTTTGTCAAGGTCGAGCGGC
80819852 AAAATGGTCATTTTGTCAAGGTCGAGCGGC
1 AAAATGGTCATTTTGTCAAGGTCGAGCGGC
80819882 AAAATGGTCATTTT
1 AAAATGGTCATTTT
80819896 ACCAAATATG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (30 bp):
AAAATGGTCATTTTGTCAAGGTCGAGCGGC
Found at i:80820366 original size:46 final size:47
Alignment explanation
Indices: 80820258--80820481 Score: 190
Period size: 47 Copynumber: 4.8 Consensus size: 47
80820248 GGTCACTTGT
* * * ** *
80820258 GTAAGCCGGTGTGAGACCATGTCTGGGACATAGCATCAGTATTGAGAT
1 GTAAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GGCTTGAGAC
* * *
80820306 G-AGTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGAC
1 GTA-AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTTGAGAC
* * *
80820352 GTAAGCCAGTGTAAGA-CATGTCTGGAACAT-GCGTCGGCTATGAAAC
1 GTAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCT-TGAGAC
* * * *
80820398 G-ATAGTCAGTGTAAGACCATGTCTGGGACATGGCTTCGACTTGAGAT
1 GTA-AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAGAC
* * *
80820445 ATGAGCCAATGTAAGACCATGTCTGGGACATGGCATC
1 GTAAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
80820482 AGAACCTTAC
Statistics
Matches: 143, Mismatches: 25, Indels: 17
0.77 0.14 0.09
Matches are distributed among these distances:
45 4 0.03
46 58 0.41
47 64 0.45
48 17 0.12
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (47 bp):
GTAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAGAC
Found at i:80825341 original size:16 final size:14
Alignment explanation
Indices: 80825313--80825339 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
80825303 TTTATACTTG
80825313 TTTGATAGTATATC
1 TTTGATAGTATATC
80825327 TTTGATAGTATAT
1 TTTGATAGTATAT
80825340 ATTTCATGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.04, G:0.15, T:0.52
Consensus pattern (14 bp):
TTTGATAGTATATC
Found at i:80829796 original size:24 final size:24
Alignment explanation
Indices: 80829760--80829805 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
80829750 AACTTAATCA
80829760 GAGTTTAAGTGGGA-AAGTAAAATT
1 GAGTTTAAGTGGGAGAAG-AAAATT
*
80829784 GAGTTTAATTGGGAGAAGAAAA
1 GAGTTTAAGTGGGAGAAGAAAA
80829806 GCCAAAACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 17 0.85
25 3 0.15
ACGTcount: A:0.43, C:0.00, G:0.30, T:0.26
Consensus pattern (24 bp):
GAGTTTAAGTGGGAGAAGAAAATT
Found at i:80833003 original size:20 final size:20
Alignment explanation
Indices: 80832978--80833022 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
80832968 AGGGACTAAA
*
80832978 ATGAAAAGTTATAAAATTTG
1 ATGAAAAATTATAAAATTTG
* *
80832998 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTATAAAATTTG
80833018 ATGAA
1 ATGAA
80833023 TACATGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.51, C:0.02, G:0.11, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTATAAAATTTG
Found at i:80836076 original size:12 final size:12
Alignment explanation
Indices: 80836059--80836083 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
80836049 AAAAGATACC
80836059 AGATTTTTCTGA
1 AGATTTTTCTGA
80836071 AGATTTTTCTGA
1 AGATTTTTCTGA
80836083 A
1 A
80836084 TATGTGTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.08, G:0.16, T:0.48
Consensus pattern (12 bp):
AGATTTTTCTGA
Found at i:80840003 original size:68 final size:65
Alignment explanation
Indices: 80839789--80840012 Score: 201
Period size: 67 Copynumber: 3.4 Consensus size: 65
80839779 ATATAGTTTG
* * * *
80839789 GCTCTCTTGTAC-ACATGGTGAACACTCAGTACCACCCATGTGACCTAGCCA-ATATA-TCTCGT
1 GCTCTCTTGTACTACATGGTGTACACT-AGTACCACCCATGCGACCTAGCTACATATATTCTTGT
80839851 A
65 A
* * * * *
80839852 GCTCTCTTGT-CTACATGGTGTCTTTCACCTGGAACCACGCATGCGACCTAGCTACATATA-TCC
1 GCTCTCTTGTACTACATGGTG---TACA-CTAGTACCACCCATGCGACCTAGCTACATATATTCT
80839915 TGTA
62 TGTA
* *
80839919 GCTCTCTTG-CCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATCATAATGTCT
1 GCTCTCTTGTACTACATGGTGTACAC-TAGTACCACCCATGCGACCTAGCTACAT-AT-AT-TCT
80839983 TGTA
62 TGTA
* *
80839987 GCTCTCTTGTAC-ACATGATGTGCACT
1 GCTCTCTTGTACTACATGGTGTACACT
80840013 CAGCCCCATA
Statistics
Matches: 130, Mismatches: 18, Indels: 22
0.76 0.11 0.13
Matches are distributed among these distances:
62 1 0.01
63 19 0.15
64 27 0.21
65 2 0.02
66 22 0.17
67 32 0.25
68 26 0.20
69 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.30
Consensus pattern (65 bp):
GCTCTCTTGTACTACATGGTGTACACTAGTACCACCCATGCGACCTAGCTACATATATTCTTGTA
Found at i:80844932 original size:47 final size:47
Alignment explanation
Indices: 80844881--80844971 Score: 164
Period size: 47 Copynumber: 1.9 Consensus size: 47
80844871 ATTTCTGACG
*
80844881 ATCTGTGGCTGCCTTCAAACTTTCACGGATTACTTTTACTTTCTGTT
1 ATCTGTGGCTGCCTTCAAACTTTCACGGATTACCTTTACTTTCTGTT
*
80844928 ATCTGTGGCTGCCTTCAGACTTTCACGGATTACCTTTACTTTCT
1 ATCTGTGGCTGCCTTCAAACTTTCACGGATTACCTTTACTTTCT
80844972 ATTCAGCATC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.16, C:0.25, G:0.15, T:0.43
Consensus pattern (47 bp):
ATCTGTGGCTGCCTTCAAACTTTCACGGATTACCTTTACTTTCTGTT
Found at i:80849260 original size:79 final size:79
Alignment explanation
Indices: 80849129--80849286 Score: 307
Period size: 79 Copynumber: 2.0 Consensus size: 79
80849119 AACGTCATCC
80849129 GCTAGGATTCTTTCTTCACCGGGATCCATTTACTAATCAAGACAAAAACATTTCAACCGTCAGAA
1 GCTAGGATTCTTTCTTCACCGGGATCCATTTACTAATCAAGACAAAAACATTTCAACCGTCAGAA
80849194 GTCATCACCCTTTT
66 GTCATCACCCTTTT
*
80849208 GCTAGGGTTCTTTCTTCACCGGGATCCATTTACTAATCAAGACAAAAACATTTCAACCGTCAGAA
1 GCTAGGATTCTTTCTTCACCGGGATCCATTTACTAATCAAGACAAAAACATTTCAACCGTCAGAA
80849273 GTCATCACCCTTTT
66 GTCATCACCCTTTT
80849287 AAACATTAAC
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 78 1.00
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.30
Consensus pattern (79 bp):
GCTAGGATTCTTTCTTCACCGGGATCCATTTACTAATCAAGACAAAAACATTTCAACCGTCAGAA
GTCATCACCCTTTT
Found at i:80850758 original size:27 final size:27
Alignment explanation
Indices: 80850728--80850905 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
80850718 ATATTGAGCC
* *
80850728 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
80850755 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
80850782 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
80850810 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
80850837 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
80850864 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
80850891 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
80850906 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:80850840 original size:55 final size:54
Alignment explanation
Indices: 80850728--80850905 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
80850718 ATATTGAGCC
* * * * *
80850728 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
80850782 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
80850837 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
80850891 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
80850906 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:80852208 original size:62 final size:63
Alignment explanation
Indices: 80852142--80852267 Score: 236
Period size: 64 Copynumber: 2.0 Consensus size: 63
80852132 ACAAGGGGGG
80852142 GTGAGACCATGTAC-TTTTTTTTTTCTCCATCACCCTTCTTTCATTATTTAATCACCATGCTT
1 GTGAGACCATGTACTTTTTTTTTTTCTCCATCACCCTTCTTTCATTATTTAATCACCATGCTT
80852204 GTGAGACCATGTACTTTTTTTTTTTTCTCCATCACCCTTCTTTCATTATTTAATCACCATGCTT
1 GTGAGACCATGTAC-TTTTTTTTTTTCTCCATCACCCTTCTTTCATTATTTAATCACCATGCTT
80852268 ATTATTTTAT
Statistics
Matches: 62, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
62 14 0.23
64 48 0.77
ACGTcount: A:0.19, C:0.25, G:0.08, T:0.48
Consensus pattern (63 bp):
GTGAGACCATGTACTTTTTTTTTTTCTCCATCACCCTTCTTTCATTATTTAATCACCATGCTT
Found at i:80855854 original size:21 final size:23
Alignment explanation
Indices: 80855821--80855863 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 23
80855811 GATGAGTATG
*
80855821 TACATCCTTGATTATAG-AATTA
1 TACATCCTCGATTATAGTAATTA
*
80855843 TACA-CCTCGATTGTAGTAATT
1 TACATCCTCGATTATAGTAATT
80855864 GTGACCTGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.40
Consensus pattern (23 bp):
TACATCCTCGATTATAGTAATTA
Found at i:80874533 original size:46 final size:46
Alignment explanation
Indices: 80874483--80874658 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
80874473 TGATTGAGCA
80874483 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80874529 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
80874574 CATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
80874622 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80874659 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 60 0.55
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:80874639 original size:93 final size:93
Alignment explanation
Indices: 80874480--80874651 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
80874470 GGATGATTGA
*
80874480 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
80874545 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
80874573 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
80874637 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
80874652 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:80878531 original size:12 final size:13
Alignment explanation
Indices: 80878495--80878532 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
80878485 AAATATTTGA
80878495 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
80878508 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
80878522 CTTG-TCTTAAT
1 CTTGTTCTTAAT
80878533 ATTCCAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:80879543 original size:21 final size:21
Alignment explanation
Indices: 80879519--80879570 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 21
80879509 GGCCTGTAAT
*
80879519 ACGGGTGTGT-CCTATGATCAC
1 ACGGGTGTGTCCCT-TGACCAC
**
80879540 ACGGGCATGTCCCTTGACCAC
1 ACGGGTGTGTCCCTTGACCAC
*
80879561 ACGAGTGTGT
1 ACGGGTGTGT
80879571 GAACCCTACA
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
21 21 0.88
22 3 0.12
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (21 bp):
ACGGGTGTGTCCCTTGACCAC
Found at i:80885084 original size:12 final size:12
Alignment explanation
Indices: 80885067--80885100 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
80885057 TAACCCGCCC
80885067 ATATTAATTTTT
1 ATATTAATTTTT
*
80885079 ATATTATTTTTT
1 ATATTAATTTTT
80885091 ATA-TAATTTT
1 ATATTAATTTT
80885101 AAAATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:80885186 original size:30 final size:30
Alignment explanation
Indices: 80885150--80885212 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
80885140 ATTTGACAAG
80885150 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
*
80885180 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
80885210 CAA
1 CAA
80885213 TAAAATAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.57, C:0.13, G:0.03, T:0.27
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAATAACAAAATTAA
Found at i:80885940 original size:19 final size:19
Alignment explanation
Indices: 80885918--80885956 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
80885908 CTTCTACATC
80885918 TATTCTTT-TTCTTGTTCTT
1 TATTCTTTCTTCTT-TTCTT
*
80885937 TATTTTTTCTTCTTTTCTT
1 TATTCTTTCTTCTTTTCTT
80885956 T
1 T
80885957 TTGTCTATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.05, C:0.15, G:0.03, T:0.77
Consensus pattern (19 bp):
TATTCTTTCTTCTTTTCTT
Found at i:80893930 original size:69 final size:68
Alignment explanation
Indices: 80893819--80893956 Score: 240
Period size: 69 Copynumber: 2.0 Consensus size: 68
80893809 GTTTCGTATA
* **
80893819 ATCTAAATTAGGCAATGAGATTGTATTCTGATGATCTTTTATTGAATATTTTGTTATATATATAG
1 ATCTAAATTAGGCAATGAGATTGCATTCCAATGATCTTTTATTGAATATTTTGTTATATATATAG
80893884 CTTG
66 -TTG
80893888 ATCTAAATTAGGCAATGAGATTGCATTCCAATGATCTTTTATTGAATATTTTGTTATATATATAG
1 ATCTAAATTAGGCAATGAGATTGCATTCCAATGATCTTTTATTGAATATTTTGTTATATATATAG
80893953 TTG
66 TTG
80893956 A
1 A
80893957 CATGAAAGTT
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
68 4 0.06
69 62 0.94
ACGTcount: A:0.32, C:0.08, G:0.15, T:0.45
Consensus pattern (68 bp):
ATCTAAATTAGGCAATGAGATTGCATTCCAATGATCTTTTATTGAATATTTTGTTATATATATAG
TTG
Found at i:80897854 original size:27 final size:27
Alignment explanation
Indices: 80897824--80898083 Score: 220
Period size: 27 Copynumber: 9.6 Consensus size: 27
80897814 ATATTGAGCC
* *
80897824 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
80897851 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
80897878 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
80897906 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* *
80897933 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
80897960 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
80897988 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
80898015 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
80898042 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
80898069 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
80898084 GTACAATTTA
Statistics
Matches: 189, Mismatches: 38, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
26 2 0.01
27 141 0.75
28 46 0.24
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:80897959 original size:82 final size:81
Alignment explanation
Indices: 80897845--80898082 Score: 345
Period size: 82 Copynumber: 2.9 Consensus size: 81
80897835 TGCTATATAA
* * *
80897845 TCAACTCGCACATTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACCCGCA
1 TCAATTCGCACACTTAGTG-CACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
80897910 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
80897927 TCAATTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAATTCGCACACTTAGTGC-ACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
80897992 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** * *
80898009 TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACAAAGT-AGAA-TCGC
1 TCAATTCGCACACTTAGTGCA-CGTAATCAAATCGCACACTTAGTGCTACATAGTCA-AACTCGC
80898072 ACACTTAGTGC
64 ACACTTAGTGC
80898083 TGTACAATTT
Statistics
Matches: 144, Mismatches: 9, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
81 18 0.12
82 126 0.88
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (81 bp):
TCAATTCGCACACTTAGTGCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCAC
ACTTAGTGCCGCATGG
Found at i:80898019 original size:109 final size:108
Alignment explanation
Indices: 80897824--80898083 Score: 290
Period size: 109 Copynumber: 2.4 Consensus size: 108
80897814 ATATTGAGCC
* * * * * *
80897824 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAATCGCACACTTAG
1 CGCACACTTAGTGCTA-CTAATCAAATCGCACACTTAGTGCTACATAATCAAATCGCACACTTAG
* * *
80897889 TGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
65 TGCCACATAGTCAAACCCGCACACTTAGTGCAGCATAGTCAATT
*
80897933 CGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
1 CGCACACTTAGTGCTAC-TAATCAAATCGCACACTTAGTGCTACATAATCAAA-TCGCACACTTA
* * ** * * *
80897998 GTGCCGCATGGTC-AATTCGCACACTTAGTGCATCATATTCATTT
64 GTGCCACATAGTCAAACCCGCACACTTAGTGCAGCATAGTCAATT
* *
80898042 CGCACACTTAGTGCAACAAAGT-AGAATCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACTAA-TCA-AATCGCACACTTAGTGCT
80898084 GTACAATTTA
Statistics
Matches: 128, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
108 3 0.02
109 104 0.81
110 21 0.16
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (108 bp):
CGCACACTTAGTGCTACTAATCAAATCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGT
GCCACATAGTCAAACCCGCACACTTAGTGCAGCATAGTCAATT
Found at i:80905943 original size:27 final size:27
Alignment explanation
Indices: 80905913--80906090 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
80905903 ATATTGAGCC
* *
80905913 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
80905940 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
80905967 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
80905995 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
80906022 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
80906049 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
80906076 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
80906091 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:80906025 original size:55 final size:54
Alignment explanation
Indices: 80905913--80906090 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
80905903 ATATTGAGCC
* * * * *
80905913 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
80905967 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
80906022 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
80906076 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
80906091 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:80913950 original size:27 final size:27
Alignment explanation
Indices: 80913920--80914097 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
80913910 ATATTGAGCC
* *
80913920 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
80913947 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
80913974 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
80914002 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
80914029 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
80914056 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
80914083 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
80914098 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:80914032 original size:55 final size:54
Alignment explanation
Indices: 80913920--80914097 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
80913910 ATATTGAGCC
* * * * *
80913920 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
80913974 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
80914029 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
80914083 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
80914098 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:80920657 original size:122 final size:120
Alignment explanation
Indices: 80920442--80920665 Score: 315
Period size: 122 Copynumber: 1.9 Consensus size: 120
80920432 CACAATAACA
* * * *
80920442 ATGAGAATGAGAATAGAGATGTAATGGGTCTGAGGTTTTCCTAATCTTAATTTAACACGAAATGT
1 ATGAGAATAAGAATAGAGATGTAATGGGTATGAGGTGTTCCTAAACTTAATTTAACACGAAATGT
* *
80920507 ATGATAACTAACCTAGGCATGCAAATTAAATGATAGATATTGGCATGGTAATAGC
66 ATGATAACTAACCTAAGAATGCAAATTAAATGATAGATATTGGCATGGTAATAGC
* * * *
80920562 ATGAGAATAAGCATAGTA-ATGTCATGGGTATGAGGTGTTCCTAAAAACTTGATTTAACATGAAA
1 ATGAGAATAAGAATAG-AGATGTAATGGGTATGAGGTGTTCCT--AAACTTAATTTAACACGAAA
*
80920626 TGTATGATAATTAACCTAAGAATGCAAATTAAATGATAGA
63 TGTATGATAACTAACCTAAGAATGCAAATTAAATGATAGA
80920666 AAAATGAAAA
Statistics
Matches: 90, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
120 35 0.39
121 1 0.01
122 54 0.60
ACGTcount: A:0.40, C:0.10, G:0.21, T:0.30
Consensus pattern (120 bp):
ATGAGAATAAGAATAGAGATGTAATGGGTATGAGGTGTTCCTAAACTTAATTTAACACGAAATGT
ATGATAACTAACCTAAGAATGCAAATTAAATGATAGATATTGGCATGGTAATAGC
Found at i:80927528 original size:14 final size:16
Alignment explanation
Indices: 80927502--80927533 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
80927492 AAGTTATAGT
80927502 AATAACAATAAAA-AA
1 AATAACAATAAAAGAA
80927517 AATAAC-ATAAAAGAA
1 AATAACAATAAAAGAA
80927532 AA
1 AA
80927534 CTAAATTTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.78, C:0.06, G:0.03, T:0.12
Consensus pattern (16 bp):
AATAACAATAAAAGAA
Found at i:80930497 original size:6 final size:6
Alignment explanation
Indices: 80930479--80930572 Score: 86
Period size: 6 Copynumber: 15.3 Consensus size: 6
80930469 AAGAAACATT
*
80930479 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * *
80930528 ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAAA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
80930573 GTGAATGCAA
Statistics
Matches: 74, Mismatches: 6, Indels: 16
0.77 0.06 0.17
Matches are distributed among these distances:
5 4 0.05
6 61 0.82
7 7 0.09
8 2 0.03
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:80930530 original size:31 final size:31
Alignment explanation
Indices: 80930493--80930572 Score: 124
Period size: 31 Copynumber: 2.6 Consensus size: 31
80930483 GAACTAGAAT
*
80930493 CAGAATCAGAATCAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGAATCAGAATCAGGTAA
*
80930524 CAGAATCAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGAATCAGGTAA
* *
80930555 CAAAATCAAAATCAGAAT
1 CAGAATCAGAATCAGAAT
80930573 GTGAATGCAA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.17
Consensus pattern (31 bp):
CAGAATCAGAATCAGAATCAGAATCAGGTAA
Found at i:80930766 original size:27 final size:28
Alignment explanation
Indices: 80930711--80930768 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 28
80930701 GTGACAGATT
* *
80930711 CACCAGATACAGATATTTGTGGCATAGC
1 CACCAGATACAGATATATGTGGCAAAGC
80930739 CACCAGA-ATCAGATA-ATGTGGCAAAGC
1 CACCAGATA-CAGATATATGTGGCAAAGC
80930766 CAC
1 CAC
80930769 TTAACAGAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 14 0.52
28 13 0.48
ACGTcount: A:0.36, C:0.24, G:0.21, T:0.19
Consensus pattern (28 bp):
CACCAGATACAGATATATGTGGCAAAGC
Found at i:80931381 original size:27 final size:27
Alignment explanation
Indices: 80931351--80931682 Score: 405
Period size: 27 Copynumber: 12.3 Consensus size: 27
80931341 ACCCCACGAA
* * *
80931351 GGTATCTCGGTAATTCTACCCTACAGG
1 GGTATTTCAGTAATTCTACCTTACAGG
* * * * *
80931378 GGTATTTTAATATTTCTACCATACAAG
1 GGTATTTCAGTAATTCTACCTTACAGG
** *
80931405 GGTATTTTGGTAATTCTACCCTACAGG
1 GGTATTTCAGTAATTCTACCTTACAGG
80931432 GGTATTTCAGTAATTCTACCTTACAGG
1 GGTATTTCAGTAATTCTACCTTACAGG
*
80931459 GGTATTTC-GTTAATTCTACCTTACAAG
1 GGTATTTCAG-TAATTCTACCTTACAGG
* * *
80931486 GGTATTTCAATAATTGTACCTTATAGG
1 GGTATTTCAGTAATTCTACCTTACAGG
* * *
80931513 GGTGTTTCAGTAATTCTACCCTATAGG
1 GGTATTTCAGTAATTCTACCTTACAGG
*
80931540 GGTATTTCAGTAATTCTACCTTACAAG
1 GGTATTTCAGTAATTCTACCTTACAGG
* *
80931567 GGTATTTCAGTAATTGTACCTTATAGG
1 GGTATTTCAGTAATTCTACCTTACAGG
* *
80931594 GGTGTTTCAGTAATTCTACCCTACAGG
1 GGTATTTCAGTAATTCTACCTTACAGG
* * *
80931621 GGTATTTCGGTAATTCTACCCTACAGA
1 GGTATTTCAGTAATTCTACCTTACAGG
*
80931648 GGTATTTTAGTAATTCTACCTTACAGG
1 GGTATTTCAGTAATTCTACCTTACAGG
80931675 GGTATTTC
1 GGTATTTC
80931683 GATAATTTTG
Statistics
Matches: 260, Mismatches: 43, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
26 1 0.00
27 259 1.00
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.38
Consensus pattern (27 bp):
GGTATTTCAGTAATTCTACCTTACAGG
Found at i:80931757 original size:54 final size:54
Alignment explanation
Indices: 80931673--80931987 Score: 245
Period size: 54 Copynumber: 5.8 Consensus size: 54
80931663 CTACCTTACA
* * ** * *** **
80931673 GGGGTATTTCGATAATTTTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATTG
1 GGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAATTG
* * **
80931727 GGGGTACTTTGGTAATTTTACAAGTTGAGGGTATTTTAGTAATTTTACAAATTG
1 GGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAATTG
* * * * **
80931781 AGGGTATTTTAGTAATTTTGCAAATTGAGGGTATTTCGGTAATTTCACAAATCA
1 GGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAATTG
*** * ** ***
80931835 GGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAACCA
1 GGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAATTG
* * * ** * *
80931889 AGGGTATTTTGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTGTAAACTA
1 GGGGTATTTTGGTAATTTTACAAATTGA-GGGTATTTCGGTAATTTTACAAATTG
* *** *
80931943 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTT
1 GGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTT
80931988 GGTAAACTAA
Statistics
Matches: 220, Mismatches: 39, Indels: 4
0.84 0.15 0.02
Matches are distributed among these distances:
53 1 0.00
54 218 0.99
55 1 0.00
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.40
Consensus pattern (54 bp):
GGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAATTG
Found at i:80931770 original size:81 final size:79
Alignment explanation
Indices: 80931672--80931961 Score: 294
Period size: 81 Copynumber: 3.6 Consensus size: 79
80931662 TCTACCTTAC
* * ** **** *
80931672 AGGGGTATTTCGATAATTTTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATTGGGGGTACTTT
1 AGGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTGTAAATTGAGGGTA-TTT
*
80931737 GGTAATTTTACAAGT
65 GGTAATTTTACAAAT
* * * * *
80931752 TGAGGGTATTTTAGTAATTTTACAAATTGAGGGTATTTTAGTAATTTTGCAAATTGAGGGTATTT
1 AG-GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTGTAAATTGAGGGTATTT
*
80931817 CGGTAATTTCACAAAT
65 -GGTAATTTTACAAAT
* * ***
80931833 CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTT
1 -AGGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTGTAAATTGAGGGTA-TT
80931898 TGGTAATTTTACAAACT
64 TGGTAATTTTACAAA-T
** *
80931915 AGGGGTATTTTGGTAATTTTGTAAA-CTAAGGGTATTTTGGTAATTTT
1 AGGGGTATTTTGGTAATTTTACAAATC-GAGGGTATTTTGGTAATTTT
80931962 ACAAACCAAG
Statistics
Matches: 175, Mismatches: 29, Indels: 11
0.81 0.13 0.05
Matches are distributed among these distances:
80 5 0.03
81 165 0.94
82 5 0.03
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.41
Consensus pattern (79 bp):
AGGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTGTAAATTGAGGGTATTTG
GTAATTTTACAAAT
Found at i:80931968 original size:81 final size:80
Alignment explanation
Indices: 80931728--80931987 Score: 340
Period size: 81 Copynumber: 3.2 Consensus size: 80
80931718 TGTAAATTGG
* * * * * * *
80931728 GGGTACTTTGGTAATTTTACAAGTTGAGGGTATTTTAGTAATTTTACAAATTGAGGGTATTTTAG
1 GGGTATTTTGGTAATTTTACAAATAG-GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGG
***
80931793 TAATTTTGCAAATTGA
65 TAATTTTGCAAACCAA
* * *
80931809 GGGTATTTCGGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAAT-AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGG
*
80931874 TAATTTTGTAAACCAA
65 TAATTTTGCAAACCAA
**
80931890 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAA-TAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGG
*
80931955 TAATTTTACAAACCAA
65 TAATTTTGCAAACCAA
80931971 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
80931988 GGTAAACTAA
Statistics
Matches: 156, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
81 154 0.99
82 2 0.01
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.41
Consensus pattern (80 bp):
GGGTATTTTGGTAATTTTACAAATAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGT
AATTTTGCAAACCAA
Found at i:80931993 original size:54 final size:54
Alignment explanation
Indices: 80931710--80931997 Score: 326
Period size: 54 Copynumber: 5.3 Consensus size: 54
80931700 AGGGTAAAAC
* ** * ** *
80931710 GGTAATTTTGTAAATTGGGGGTACTTTGGTAATTTTACAAGTTGAGGGTATTTT
1 GGTAATTTTGTAAACTAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTT
* ** * * * * * * *
80931764 AGTAATTTTACAAATTGAGGGTATTTTAGTAATTTTGCAAATTGAGGGTATTTC
1 GGTAATTTTGTAAACTAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTT
*** * *
80931818 GGTAATTTCACAAA-TCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTT
1 GGTAATTTTGTAAACT-AAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTT
* *
80931872 GGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT
1 GGTAATTTTGTAAACTAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTT
*
80931926 GGTAATTTTGTAAACTAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTT
1 GGTAATTTTGTAAACTAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTT
*
80931980 GGTAATTTGGTAAACTAA
1 GGTAATTTTGTAAACTAA
80931998 AGTATTCTAA
Statistics
Matches: 202, Mismatches: 30, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
53 1 0.00
54 201 1.00
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.41
Consensus pattern (54 bp):
GGTAATTTTGTAAACTAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTT
Found at i:80931994 original size:27 final size:27
Alignment explanation
Indices: 80931728--80931987 Score: 295
Period size: 27 Copynumber: 9.6 Consensus size: 27
80931718 TGTAAATTGG
* ****
80931728 GGGTACTTTGGTAATTTTACAAGTTGA
1 GGGTATTTTGGTAATTTTACAAACCAA
* ***
80931755 GGGTATTTTAGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTACAAACCAA
* * ***
80931782 GGGTATTTTAGTAATTTTGCAAATTGA
1 GGGTATTTTGGTAATTTTACAAACCAA
* * * *
80931809 GGGTATTTCGGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
80931836 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
**
80931863 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
80931890 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAA
** *
80931917 GGGTATTTTGGTAATTTTGTAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAA
80931944 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
80931971 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
80931988 GGTAAACTAA
Statistics
Matches: 206, Mismatches: 27, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 206 1.00
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:80939849 original size:28 final size:28
Alignment explanation
Indices: 80939790--80939854 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
80939780 TAACTATTGA
80939790 TCATTTGGGTTGAATACATACATTATGG
1 TCATTTGGGTTGAATACATACATTATGG
* * *
80939818 TCATCTGGGTTGAATACATACATTCTGT
1 TCATTTGGGTTGAATACATACATTATGG
80939846 TCATTTGGG
1 TCATTTGGG
80939855 CTAAACCTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.25, C:0.14, G:0.22, T:0.40
Consensus pattern (28 bp):
TCATTTGGGTTGAATACATACATTATGG
Found at i:80941274 original size:28 final size:28
Alignment explanation
Indices: 80941222--80941306 Score: 93
Period size: 28 Copynumber: 3.1 Consensus size: 28
80941212 CATAAACGAT
* *
80941222 TACGGATGTGAATCTT--GCACTAAGTG
1 TACGAATGTGAATATTGAGCACTAAGTG
**
80941248 TACGAATGTGTTTATTGAGCACTAAGTG
1 TACGAATGTGAATATTGAGCACTAAGTG
* * *
80941276 TGCGAGTTTGAATATTGAGCACTAAGTG
1 TACGAATGTGAATATTGAGCACTAAGTG
80941304 TAC
1 TAC
80941307 AAACTATATA
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
26 12 0.26
28 35 0.74
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.33
Consensus pattern (28 bp):
TACGAATGTGAATATTGAGCACTAAGTG
Found at i:80944587 original size:27 final size:27
Alignment explanation
Indices: 80944546--80944932 Score: 474
Period size: 27 Copynumber: 14.4 Consensus size: 27
80944536 CCCCAAAATA
* *
80944546 GGTAAAATGATCGTAATGCCCTTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
*
80944573 GGTAAAATAACCGTAATGCCCCTGTA-
1 GGTAAAATGACCGTAATGCCCCTGTAG
* *
80944599 GGTAAAATGACTGCAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
*** *
80944626 GGTAAAATGACTACAATGCCCCTGTAT
1 GGTAAAATGACCGTAATGCCCCTGTAG
* *
80944653 GGTAAAATGACTGTAATGCCCCTATAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* * *
80944680 GGTAAAATGATCGTAATGCCCTTATAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* * *
80944707 GGTAAAATGACCATAATACCCCTATAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* * *
80944734 GGTAAAATGACCATAATGCCTCTATAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* * *
80944761 GGTAAAATAACAGTAA-ACCCCATGTAG
1 GGTAAAATGACCGTAATGCCCC-TGTAG
80944788 GGTAAAATGACCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* *
80944815 GGTAAAA-GAACCATAATGCCCCTATAG
1 GGTAAAATG-ACCGTAATGCCCCTGTAG
80944842 GGTAAAATGACCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
80944869 GGTAAAATGACCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* * * *
80944896 GGTAAAATGAACGTAATACCCTTGTAT
1 GGTAAAATGACCGTAATGCCCCTGTAG
80944923 GGTAAAATGA
1 GGTAAAATGA
80944933 TGATTATCCC
Statistics
Matches: 317, Mismatches: 38, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
26 27 0.09
27 285 0.90
28 5 0.02
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (27 bp):
GGTAAAATGACCGTAATGCCCCTGTAG
Found at i:80946808 original size:42 final size:42
Alignment explanation
Indices: 80946751--80946910 Score: 185
Period size: 42 Copynumber: 3.8 Consensus size: 42
80946741 TAGGGTTATG
80946751 TGTGATTTCGTGTAAGACCATATCTGGGATATGACATCGATA
1 TGTGATTTCGTGTAAGACCATATCTGGGATATGACATCGATA
* * *
80946793 TGTGATTTCGTGTAAGACCATGTTTGGGACATGACATCGATA
1 TGTGATTTCGTGTAAGACCATATCTGGGATATGACATCGATA
* ** * * *
80946835 TGAGACATCGTGTAAGACCATAACTGGGCTATCAGCATCGATA
1 TGTGATTTCGTGTAAGACCATATCTGGGATATGA-CATCGATA
* ** * *
80946878 TATGATCCCATGTAAGACCATATCTAGGATATG
1 TGTGATTTCGTGTAAGACCATATCTGGGATATG
80946911 GCATTGGCAT
Statistics
Matches: 95, Mismatches: 22, Indels: 1
0.81 0.19 0.01
Matches are distributed among these distances:
42 64 0.67
43 31 0.33
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (42 bp):
TGTGATTTCGTGTAAGACCATATCTGGGATATGACATCGATA
Found at i:80950131 original size:40 final size:40
Alignment explanation
Indices: 80950076--80950155 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
80950066 CTAGTGTGTT
80950076 GCAATATAAACTCTGGGATGGAAGTTCAACATGAAGCAGG
1 GCAATATAAACTCTGGGATGGAAGTTCAACATGAAGCAGG
*
80950116 GCAATATAAACTCTGGGATGGAAGTTCAACATGAGGCAGG
1 GCAATATAAACTCTGGGATGGAAGTTCAACATGAAGCAGG
80950156 AATGTTTTTG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.36, C:0.15, G:0.29, T:0.20
Consensus pattern (40 bp):
GCAATATAAACTCTGGGATGGAAGTTCAACATGAAGCAGG
Found at i:80952280 original size:44 final size:44
Alignment explanation
Indices: 80952232--80952315 Score: 134
Period size: 44 Copynumber: 1.9 Consensus size: 44
80952222 CACTGGCTCT
*
80952232 CACATATCCAT-GTCGATGCATGTCCCAAACATGTCTTACATTAG
1 CACATAT-CATAGCCGATGCATGTCCCAAACATGTCTTACATTAG
*
80952276 CACATCTCATAGCCGATGCATGTCCCAAACATGTCTTACA
1 CACATATCATAGCCGATGCATGTCCCAAACATGTCTTACA
80952316 CTGGCTTACA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
43 3 0.08
44 34 0.92
ACGTcount: A:0.30, C:0.30, G:0.13, T:0.27
Consensus pattern (44 bp):
CACATATCATAGCCGATGCATGTCCCAAACATGTCTTACATTAG
Found at i:80952344 original size:46 final size:45
Alignment explanation
Indices: 80952194--80952415 Score: 166
Period size: 46 Copynumber: 4.8 Consensus size: 45
80952184 GGGTATAATA
** * *
80952194 CTGATGTCATGTCCCTGACATGGTCTTACACTGGCTCTCACATATCCATG
1 CTGATG-CATGTCCCAAACAT-GTCTTACACTGGCT-T-ACATCT-CAAG
* *
80952244 -TCGATGCATGTCCCAAACATGTCTTACATTAGC--ACATCTCATAG
1 CT-GATGCATGTCCCAAACATGTCTTACACTGGCTTACATCTCA-AG
* *
80952288 CCGATGCATGTCCCAAACATGTCTTACACTGGCTTACATCTCGAGG
1 CTGATGCATGTCCCAAACATGTCTTACACTGGCTTACATCTC-AAG
* * *
80952334 CTGATGCATGTCCCAGAA-ATGTCTTACACTAGCTCT-CGTCTCAAT
1 CTGATGCATGTCCCA-AACATGTCTTACACTGGCT-TACATCTCAAG
* * *
80952379 ATCGATGCCATATCCCAGACATGGTCTTACACTGGCT
1 CT-GATG-CATGTCCCAAACAT-GTCTTACACTGGCT
80952416 ATCATAATGT
Statistics
Matches: 141, Mismatches: 19, Indels: 26
0.76 0.10 0.14
Matches are distributed among these distances:
43 2 0.01
44 35 0.25
45 2 0.01
46 47 0.33
47 14 0.10
48 24 0.17
49 13 0.09
50 4 0.03
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.29
Consensus pattern (45 bp):
CTGATGCATGTCCCAAACATGTCTTACACTGGCTTACATCTCAAG
Found at i:80952438 original size:94 final size:92
Alignment explanation
Indices: 80952196--80952465 Score: 239
Period size: 94 Copynumber: 2.9 Consensus size: 92
80952186 GTATAATACT
* * * *
80952196 GATGTCATGTCCCTGACATGGTCTTACACTGGCTCTCACATATCCAT-GTCGATGCATGTCCCA-
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCT-TCATA-AT-CGTGGCCGATGCATGTCCCAG
*
80952259 AACATGTCTTACATTAG-CACATCTCATAGCC
62 AA-ATGTCTTACACTAGCCACATCTCATAGCC
* * * *
80952290 GATGCATGTCCCAAACAT-GTCTTACACTGGCTTACAT-CTCGAGGCTGATGCATGTCCCAGAAA
1 GATGCATGTCCCAGACATGGTCTTACACTGGCTT-CATAATCGTGGCCGATGCATGTCCCAGAAA
* * *
80952353 TGTCTTACACTAGCTCTCGTCTCAATA-TC
65 TGTCTTACACTAGC-CACATCTC-ATAGCC
* ** *
80952382 GATGCCATATCCCAGACATGGTCTTACACTGGCTATCATAAT-GTGGCCGATGCATGTCTTAGAC
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCT-TCATAATCGTGGCCGATGCATGTCCCAGAA
*
80952446 ACGTCTTACACTAGCACACA
64 ATGTCTTACACTAGC-CACA
80952466 CACATTGCCC
Statistics
Matches: 142, Mismatches: 24, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
89 1 0.01
90 28 0.20
91 3 0.02
92 27 0.19
93 27 0.19
94 54 0.38
95 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.29
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGGTCTTACACTGGCTTCATAATCGTGGCCGATGCATGTCCCAGAAAT
GTCTTACACTAGCCACATCTCATAGCC
Found at i:80954388 original size:5 final size:5
Alignment explanation
Indices: 80954378--80954402 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
80954368 TCTTGCTTTG
80954378 TATTT TATTT TATTT TATTT TATTT
1 TATTT TATTT TATTT TATTT TATTT
80954403 CGAAAATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TATTT
Found at i:80956759 original size:131 final size:129
Alignment explanation
Indices: 80956624--80956863 Score: 293
Period size: 130 Copynumber: 1.8 Consensus size: 129
80956614 CCACGGCTAT
* ** *
80956624 TAAAAATCCCTTAAACA-AAGGCAATATGCGATATTTGGCAATTCACAGAATCGTGCCCTAACGT
1 TAAAAATCCCTTAAA-AGAAGGCAATATGC-ATACTTGAAAATTC-CAGAATCATGCCCTAACGT
* * *
80956688 GTTGGGTTGCAATTTCTCGTTTGCTTAAAATAATCAAATATCCCTTCAAAATTTTACTCGTGTCT
63 GCTGGGTTGCAATTTCTCGTTTGCTCAAAACAATCAAATATCCCTTCAAAATTTTACTCGTGTCT
80956753 TC
128 TC
* * * **
80956755 TAAAAATCCGTTAAAATGAAGGCAATATTCATGCTTGAAAATTCGGGAATCATGCCCTAACGTGC
1 TAAAAATCCCTTAAAA-GAAGGCAATATGCATACTTGAAAATTCCAGAATCATGCCCTAACGTGC
** * *
80956820 TGGGTTGTGATTTCTCGTTTGCTCAAAACAATCGAATATTCCTT
65 TGGGTTGCAATTTCTCGTTTGCTCAAAACAATCAAATATCCCTT
80956864 TAGGTTTTCA
Statistics
Matches: 91, Mismatches: 16, Indels: 5
0.81 0.14 0.04
Matches are distributed among these distances:
130 56 0.62
131 24 0.26
132 11 0.12
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (129 bp):
TAAAAATCCCTTAAAAGAAGGCAATATGCATACTTGAAAATTCCAGAATCATGCCCTAACGTGCT
GGGTTGCAATTTCTCGTTTGCTCAAAACAATCAAATATCCCTTCAAAATTTTACTCGTGTCTTC
Found at i:80962153 original size:67 final size:67
Alignment explanation
Indices: 80962040--80962172 Score: 194
Period size: 67 Copynumber: 2.0 Consensus size: 67
80962030 CACCAGATAC
* * * * *
80962040 AGATATTGTGACTAGGCCAGCAGAATAGATATATATGGTGAAGCCACCAGATTGCAGCGAGGCTG
1 AGATATTGTGACGAAGCCACCAGAACAGATATATATGGCGAAGCCACCAGATTGCAGCGAGGCTG
80962105 CT
66 CT
* * *
80962107 AGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCTG
1 AGATATTGTGACGAAGCCACCAGAACAGATATATATGGCGAAGCCACCAGATTGCAGCGAGGCTG
80962172 C
66 C
80962173 CAGAACGCTT
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
67 58 1.00
ACGTcount: A:0.31, C:0.20, G:0.29, T:0.20
Consensus pattern (67 bp):
AGATATTGTGACGAAGCCACCAGAACAGATATATATGGCGAAGCCACCAGATTGCAGCGAGGCTG
CT
Found at i:80962154 original size:27 final size:26
Alignment explanation
Indices: 80962107--80962157 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
80962097 CGAGGCTGCT
*
80962107 AGATATTGTGACGAAGTCACCAGAAC
1 AGATATTGTGACGAAGCCACCAGAAC
* *
80962133 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
80962158 TTGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.20, G:0.27, T:0.18
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAC
Found at i:80962840 original size:27 final size:27
Alignment explanation
Indices: 80962810--80962955 Score: 202
Period size: 27 Copynumber: 5.4 Consensus size: 27
80962800 GAGGCAAAAT
* * * *
80962810 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80962837 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
80962864 GGTAATTCTATCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
80962891 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
80962918 GGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
80962945 AATAATTCTAC
1 GGTAATTCTAC
80962956 AACTTATCCA
Statistics
Matches: 105, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 105 1.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:80962868 original size:54 final size:54
Alignment explanation
Indices: 80962810--80962955 Score: 229
Period size: 54 Copynumber: 2.7 Consensus size: 54
80962800 GAGGCAAAAT
* * *
80962810 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
* *
80962864 GGTAATTCTATCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
* *
80962918 GGTAATTTTACCCTACAGGGGTATTTCAATAATTCTAC
1 GGTAATTTTACCCTACAAGGGTATTTCGATAATTCTAC
80962956 AACTTATCCA
Statistics
Matches: 83, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 83 1.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.34
Consensus pattern (54 bp):
GGTAATTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
Found at i:80966769 original size:17 final size:17
Alignment explanation
Indices: 80966747--80966783 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
80966737 GGTACTTTGG
80966747 AGAAACCATGGTAAAGA
1 AGAAACCATGGTAAAGA
80966764 AGAAACCATGGTAAAGA
1 AGAAACCATGGTAAAGA
80966781 AGA
1 AGA
80966784 TTTTGGTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.54, C:0.11, G:0.24, T:0.11
Consensus pattern (17 bp):
AGAAACCATGGTAAAGA
Found at i:80968536 original size:21 final size:21
Alignment explanation
Indices: 80968510--80968558 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
80968500 TATACATGAT
* *
80968510 ATGATATGATATGATATGCGC
1 ATGATATGATATGAGATGCAC
*
80968531 ATGATATGTTATGAGATGCAC
1 ATGATATGATATGAGATGCAC
80968552 ATGATAT
1 ATGATAT
80968559 ACTCATTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.35
Consensus pattern (21 bp):
ATGATATGATATGAGATGCAC
Found at i:80972383 original size:33 final size:34
Alignment explanation
Indices: 80972314--80972384 Score: 99
Period size: 34 Copynumber: 2.1 Consensus size: 34
80972304 GACGGAATAA
*
80972314 CAATGTGGGCCTTAGTCCAATACAGTAACAGTAT
1 CAATGTGGGCCTTAGCCCAATACAGTAACAGTAT
* **
80972348 CAATGTGGGCCTTAGCCCATTTTAGT-ACAGTAT
1 CAATGTGGGCCTTAGCCCAATACAGTAACAGTAT
80972381 CAAT
1 CAAT
80972385 AATGCACACA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
33 11 0.33
34 22 0.67
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.30
Consensus pattern (34 bp):
CAATGTGGGCCTTAGCCCAATACAGTAACAGTAT
Found at i:80972566 original size:44 final size:44
Alignment explanation
Indices: 80972498--80972584 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 44
80972488 ATATAGTACC
*
80972498 GGTTCAGGCACAAACAGTAATTGCAGCAGAGTTGCCAGTAATAG
1 GGTTCAGGCACAAACAGTAATTGCAGCAGAGCTGCCAGTAATAG
* * **
80972542 NGGTTCA-GCACAACCAGTATTTGCAGTTGAGCTGCCAGTAATA
1 -GGTTCAGGCACAAACAGTAATTGCAGCAGAGCTGCCAGTAATA
80972585 TGCTTATATC
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 31 0.84
45 6 0.16
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.23
Consensus pattern (44 bp):
GGTTCAGGCACAAACAGTAATTGCAGCAGAGCTGCCAGTAATAG
Found at i:80976554 original size:34 final size:33
Alignment explanation
Indices: 80976511--80976579 Score: 102
Period size: 34 Copynumber: 2.1 Consensus size: 33
80976501 GACACAATAA
*
80976511 CAATTTGGGCCTTAGCCCAATACAGTAACAGTAT
1 CAATGTGGGCCTTAGCCCAATACAGT-ACAGTAT
* *
80976545 CAATGTGGGCCTTAGCCCATTTCAGTACAGTAT
1 CAATGTGGGCCTTAGCCCAATACAGTACAGTAT
80976578 CA
1 CA
80976580 GTAATGCACA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
33 9 0.28
34 23 0.72
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.28
Consensus pattern (33 bp):
CAATGTGGGCCTTAGCCCAATACAGTACAGTAT
Found at i:80980404 original size:5 final size:5
Alignment explanation
Indices: 80980395--80980433 Score: 69
Period size: 5 Copynumber: 7.8 Consensus size: 5
80980385 TATCATATGT
*
80980395 CCCAC GCCAC CCCAC CCCAC CCCAC CCCAC CCCAC CCCA
1 CCCAC CCCAC CCCAC CCCAC CCCAC CCCAC CCCAC CCCA
80980434 TACAATGCAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.21, C:0.77, G:0.03, T:0.00
Consensus pattern (5 bp):
CCCAC
Found at i:80982590 original size:49 final size:47
Alignment explanation
Indices: 80982427--80982610 Score: 160
Period size: 49 Copynumber: 3.8 Consensus size: 47
80982417 GGGGCGTTAC
* * * *
80982427 ATGAGAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGAT
1 ATGAAAGC-AGTGTAAGACCTGTCTGGGACATGGCATCAGCCT-GACAT
* *
80982475 AT-ACAAGCTAGTGTAAGACCTGTCTGGGACATGGCATTGACA-CC-GATAG
1 ATGA-AAGC-AGTGTAAGACCTGTCTGGGACATGGCA-T--CAGCCTGACAT
* * *
80982524 ATGAGAGCCAGTATAAGACCTATCTGGGACATGGCATCAGCCTTGACAT
1 ATGAAAG-CAGTGTAAGACCTGTCTGGGACATGGCATCAGCC-TGACAT
*
80982573 ATGAAAGTCAGTGTAAGACCTGTCTGGGACATGACATC
1 ATGAAAG-CAGTGTAAGACCTGTCTGGGACATGGCATC
80982611 GACTTTGATG
Statistics
Matches: 111, Mismatches: 15, Indels: 19
0.77 0.10 0.13
Matches are distributed among these distances:
46 2 0.02
47 3 0.03
48 29 0.26
49 71 0.64
50 3 0.03
51 2 0.02
52 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (47 bp):
ATGAAAGCAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTGACAT
Found at i:80982601 original size:98 final size:97
Alignment explanation
Indices: 80982427--80982605 Score: 254
Period size: 98 Copynumber: 1.8 Consensus size: 97
80982417 GGGGCGTTAC
* * * * *
80982427 ATGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAG
1 ATGAGAGCCAGTATAAGACATATCTGGGACATGCATCAGCCTCGACATATACAAGCTAGTGTAAG
80982492 ACCTGTCTGGGACATGGCATTGACACCGATAG
66 ACCTGTCTGGGACATGGCATTGACACCGATAG
* *
80982524 ATGAGAGCCAGTATAAGACCTATCTGGGACATGGCATCAGCCTTGACATATGA-AAG-TCAGTGT
1 ATGAGAGCCAGTATAAGACATATCTGGGACAT-GCATCAGCCTCGACATAT-ACAAGCT-AGTGT
80982587 AAGACCTGTCTGGGACATG
63 AAGACCTGTCTGGGACATG
80982606 ACATCGACTT
Statistics
Matches: 72, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
97 29 0.40
98 42 0.58
99 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.23
Consensus pattern (97 bp):
ATGAGAGCCAGTATAAGACATATCTGGGACATGCATCAGCCTCGACATATACAAGCTAGTGTAAG
ACCTGTCTGGGACATGGCATTGACACCGATAG
Found at i:80989681 original size:54 final size:52
Alignment explanation
Indices: 80989612--80989782 Score: 189
Period size: 54 Copynumber: 3.2 Consensus size: 52
80989602 AAACATACAT
* *
80989612 CACATAGGGGTAAAATAGTCATCTTACCATAAAAGGGAAAAATAGTCATTTTAC
1 CACATAAGGGTAAAATAGTCATTTTACCAT--AAGGGAAAAATAGTCATTTTAC
* * * *
80989666 CACATAAGGGAAAAATAGTCATTTTACTTCATAAGGAAAAAACAATCATTTTAC
1 CACATAAGGGTAAAATAGTCATTTTAC--CATAAGGGAAAAATAGTCATTTTAC
* * * *
80989720 CTCCTAAGGGTAAAATAGTCATTTTACCTTGTAAGGGAAAAATAGTCGTTTTAC
1 CACATAAGGGTAAAATAGTCATTTTACC--ATAAGGGAAAAATAGTCATTTTAC
*
80989774 CCCATAAGG
1 CACATAAGG
80989783 AAAGGGCAAA
Statistics
Matches: 97, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
52 1 0.01
54 93 0.96
56 3 0.03
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (52 bp):
CACATAAGGGTAAAATAGTCATTTTACCATAAGGGAAAAATAGTCATTTTAC
Found at i:80989814 original size:59 final size:59
Alignment explanation
Indices: 80989671--80989839 Score: 161
Period size: 59 Copynumber: 2.9 Consensus size: 59
80989661 TTTACCACAT
* * ** *
80989671 AAGGGAAAAATAGTCATTTTACTTCATAAGGAAAAAACAATCATTTTACCTCC-T-----
1 AAGGGCAAAACAGTCATTTTACCCCATAAGGGAAAAACAATCATTTTACC-CCATAAGGA
* * *** * * *
80989725 AAGGGTAAAATAGTCATTTTACCTTGTAAGGGAAAAATAGTCGTTTTACCCCATAAGGA
1 AAGGGCAAAACAGTCATTTTACCCCATAAGGGAAAAACAATCATTTTACCCCATAAGGA
*
80989784 AAGGGCAAAACAGTCATTTTACCCCATAAGGGCAAAACAATCATTTTACCCCATAA
1 AAGGGCAAAACAGTCATTTTACCCCATAAGGGAAAAACAATCATTTTACCCCATAA
80989840 CGGCAAAACA
Statistics
Matches: 92, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
53 2 0.02
54 43 0.47
59 47 0.51
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (59 bp):
AAGGGCAAAACAGTCATTTTACCCCATAAGGGAAAAACAATCATTTTACCCCATAAGGA
Found at i:80989834 original size:27 final size:27
Alignment explanation
Indices: 80989644--80989858 Score: 189
Period size: 27 Copynumber: 7.8 Consensus size: 27
80989634 CTTACCATAA
* *
80989644 AAGGGAAAAATAGTCATTTTACCACAT
1 AAGGGAAAAACAGTCATTTTACCCCAT
* **
80989671 AAGGGAAAAATAGTCATTTTACTTCAT
1 AAGGGAAAAACAGTCATTTTACCCCAT
* *
80989698 AAGGAAAAAACAATCATTTTACCTCC-T
1 AAGGGAAAAACAGTCATTTTACC-CCAT
* * ***
80989725 AAGGGTAAAATAGTCATTTTACCTTGT
1 AAGGGAAAAACAGTCATTTTACCCCAT
* *
80989752 AAGGGAAAAATAGTCGTTTTACCCCAT
1 AAGGGAAAAACAGTCATTTTACCCCAT
*
80989779 AAGGAAAGGGCAAAACAGTCATTTTACCCCAT
1 -----AAGGGAAAAACAGTCATTTTACCCCAT
* *
80989811 AAGGGCAAAACAATCATTTTACCCCAT
1 AAGGGAAAAACAGTCATTTTACCCCAT
* * *
80989838 AACGGCAAAACAATCATTTTA
1 AAGGGAAAAACAGTCATTTTA
80989859 TCGATTAAGG
Statistics
Matches: 158, Mismatches: 23, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
27 133 0.84
28 1 0.01
32 24 0.15
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.27
Consensus pattern (27 bp):
AAGGGAAAAACAGTCATTTTACCCCAT
Found at i:80993164 original size:21 final size:21
Alignment explanation
Indices: 80993135--80993190 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
80993125 CAGCCTGTAG
* *
80993135 CACGGGCGTGTCCCAGGGTTA
1 CACGAGCGTGTCCCAGGGTCA
80993156 CACGAGCGTGTCCCAGGGTCA
1 CACGAGCGTGTCCCAGGGTCA
*
80993177 CACAAGCGTGTCCC
1 CACGAGCGTGTCCC
80993191 TCATACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.18, C:0.34, G:0.32, T:0.16
Consensus pattern (21 bp):
CACGAGCGTGTCCCAGGGTCA
Found at i:80994578 original size:42 final size:42
Alignment explanation
Indices: 80994531--80994695 Score: 150
Period size: 42 Copynumber: 3.9 Consensus size: 42
80994521 GGGTTATGGA
* *
80994531 TGATTTCGTGTAAAACCATATCCGGGATATGGCATCGATATT
1 TGATTTCATGTAAAACCATATCTGGGATATGGCATCGATATT
* * * * **
80994573 TGATTTCATGTAAGACCATGTCTGGGACATGGCATCCATACA
1 TGATTTCATGTAAAACCATATCTGGGATATGGCATCGATATT
* * * * * * *
80994615 AGATATCATGTAAGACCGTAGCTGGGCTATCGACATCGATATAT
1 TGATTTCATGTAAAACCATATCTGGGATAT-GGCATCGATAT-T
* *
80994659 GTGATTCCATGTAAAACCATATTTGGGATATGGCATC
1 -TGATTTCATGTAAAACCATATCTGGGATATGGCATC
80994696 TTATTATGTG
Statistics
Matches: 92, Mismatches: 28, Indels: 4
0.74 0.23 0.03
Matches are distributed among these distances:
42 57 0.62
43 8 0.09
44 5 0.05
45 22 0.24
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (42 bp):
TGATTTCATGTAAAACCATATCTGGGATATGGCATCGATATT
Found at i:80996662 original size:40 final size:39
Alignment explanation
Indices: 80996607--80996860 Score: 262
Period size: 40 Copynumber: 6.4 Consensus size: 39
80996597 ATGATAATCA
* * *
80996607 GGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TTCCG
* *
80996647 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TTCCG
* * **
80996687 GGCTAAGTCCCGAAGGCATTTGTGTGAGTTATTACACTCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTC-CG
* *
80996727 GGCTAAGTCCCGAAGGCATTTGTACGAGCTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-TCCG
* **
80996767 GGCTAAGTCCCAAAGGCATCGGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-TCCG
* *
80996807 GGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAT-TCCG
* *
80996845 GGTTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGG
80996861 TACTTGGCTT
Statistics
Matches: 183, Mismatches: 28, Indels: 8
0.84 0.13 0.04
Matches are distributed among these distances:
38 15 0.08
39 15 0.08
40 152 0.83
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTCCG
Found at i:80996820 original size:120 final size:120
Alignment explanation
Indices: 80996607--80996826 Score: 327
Period size: 120 Copynumber: 1.8 Consensus size: 120
80996597 ATGATAATCA
* * * **
80996607 GGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCATTTGCACGAGTGACTAGTTCCGGGCTAAGTCCCAAAGGCATCGGTGC
*
80996672 GAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTATTACACTCG
66 GAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTATTACACTCG
*
80996727 GGCTAAGTCCCGAAGGCATTTGTACGAGCT-ACTA-TATCCGGGCTAAGTCCCAAAGGCATCGGT
1 GGCTAAGTCCCGAAGGCATTTGCACGAG-TGACTAGT-TCCGGGCTAAGTCCCAAAGGCATCGGT
* *
80996790 GCGAGTTACTATATCCGGGCTATGTCCCGAAGGCATT
64 GCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATT
80996827 GAGCGAGTAG
Statistics
Matches: 89, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
119 1 0.01
120 87 0.98
121 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.26
Consensus pattern (120 bp):
GGCTAAGTCCCGAAGGCATTTGCACGAGTGACTAGTTCCGGGCTAAGTCCCAAAGGCATCGGTGC
GAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTATTACACTCG
Found at i:81007360 original size:39 final size:41
Alignment explanation
Indices: 81007265--81007448 Score: 208
Period size: 40 Copynumber: 4.6 Consensus size: 41
81007255 TTGAATGATG
*
81007265 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATA
*
81007304 TCCGGACTAAGAT-CCGAAGGCATTTGTGCG-AGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAG-TACTAATA
81007344 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATA
* *
81007383 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
* *
81007423 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
81007449 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 9, Indels: 19
0.82 0.06 0.12
Matches are distributed among these distances:
39 54 0.43
40 61 0.48
41 11 0.09
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
Found at i:81007400 original size:79 final size:81
Alignment explanation
Indices: 81007265--81007448 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 81
81007255 TTGAATGATG
81007265 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
81007328 TGTGCGAGA-TACTA-A
66 TGTGCGA-ATTACTATA
* * **
81007343 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGTTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
81007404 ATTTGTGCGAATTACTATA
63 ATTTGTGCGAATTACTATA
* *
81007423 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
81007449 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
78 11 0.12
79 58 0.63
80 23 0.25
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
TGTGCGAATTACTATA
Found at i:81007470 original size:79 final size:79
Alignment explanation
Indices: 81007317--81007481 Score: 194
Period size: 79 Copynumber: 2.1 Consensus size: 79
81007307 GGACTAAGAT
* ** *
81007317 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
81007382 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
*
81007396 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* *
81007458 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
81007475 CCGAAGG
1 CCGAAGG
81007482 TACGTGATTT
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
78 3 0.04
79 46 0.62
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:81024935 original size:28 final size:27
Alignment explanation
Indices: 81024872--81025023 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
81024862 ATATTAAGTC
* * *
81024872 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
81024899 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
81024927 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
81024954 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
81024982 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
81025009 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
81025024 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:81024956 original size:55 final size:55
Alignment explanation
Indices: 81024872--81025023 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
81024862 ATATTAAGTC
* * *
81024872 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
81024927 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
81024982 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
81025024 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:81027688 original size:22 final size:23
Alignment explanation
Indices: 81027646--81027688 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
81027636 TGAATGGCTT
* *
81027646 TTGACTTAAAATTTATTGAATAC
1 TTGAATTAAAATTGATTGAATAC
81027669 TTGAATTAAAA-TGATTGAAT
1 TTGAATTAAAATTGATTGAAT
81027689 TATACATTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.42, C:0.05, G:0.12, T:0.42
Consensus pattern (23 bp):
TTGAATTAAAATTGATTGAATAC
Found at i:81028899 original size:39 final size:39
Alignment explanation
Indices: 81028846--81028969 Score: 176
Period size: 39 Copynumber: 3.2 Consensus size: 39
81028836 CGGGACTAGC
* * **
81028846 CCGGACATATTTCCAGCATGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
* *
81028885 CCGGTTATAATTCCATCACATAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
* *
81028924 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGG
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
81028963 CCGGATA
1 CCGGATA
81028970 AACATCACTG
Statistics
Matches: 75, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 75 1.00
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
Found at i:81032245 original size:40 final size:40
Alignment explanation
Indices: 81032190--81032337 Score: 260
Period size: 40 Copynumber: 3.7 Consensus size: 40
81032180 GAGCATTGGA
* *
81032190 ATATATCCGGGCTAAGACCCGAAGGCAATTACGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
81032230 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
81032270 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
* *
81032310 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
81032338 ATGTGTTTGC
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
Found at i:81035655 original size:213 final size:213
Alignment explanation
Indices: 81035275--81035701 Score: 782
Period size: 213 Copynumber: 2.0 Consensus size: 213
81035265 GAGCATCTGA
81035275 GGCTAGTGTTGCAAATTTTGCGGGATAAGCAGTTATATGCTAAGTTCAGTAAGTGTGAGTTCTGG
1 GGCTAGTGTTGCAAATTTTGCGGGATAAGCAGTTATATGCTAAGTTCAGTAAGTGTGAGTTCTGG
81035340 TTAAGAGAGGTTAGCTTCTTGGGTCATGTGGTATCCGCATCGGGTATTCGAGTTGACCCGAACAA
66 TTAAGAGAGGTTAGCTTCTTGGGTCATGTGGTATCCGCATCGGGTATTCGAGTTGACCCGAACAA
* * * ** *
81035405 AATTTCAGCCATACTTAACTGGAAACCTCCGAGAAATATTACTGAGGTTCGGAGCTTTTTGGGGC
131 AATTTCAGCCATACTTAACTGGAAACCTCCAAGAAATATTACCGAAGTTCGGAGCTTCCTGGGAC
81035470 TCGCCGGTTATTACCGAC
196 TCGCCGGTTATTACCGAC
81035488 GGCTAGTGTTGCAAATTTTGCGGGATAAGCAGTTATATGCTAAGTTCAGTAAGTGTGAGTTCTGG
1 GGCTAGTGTTGCAAATTTTGCGGGATAAGCAGTTATATGCTAAGTTCAGTAAGTGTGAGTTCTGG
81035553 TTAAGAGAGGTTAGCTTCTTGGGTCATGTGGTATCCGCATCGGGTATTCGAGTTGACCCGAACAA
66 TTAAGAGAGGTTAGCTTCTTGGGTCATGTGGTATCCGCATCGGGTATTCGAGTTGACCCGAACAA
* *
81035618 AATTTCAGCCATACTTAACTGGAAGCCTCCAAGAAATATTACCGAAGTTTGGAGCTTCCTGGGAC
131 AATTTCAGCCATACTTAACTGGAAACCTCCAAGAAATATTACCGAAGTTCGGAGCTTCCTGGGAC
81035683 TCGCCGGTTATTACCGAC
196 TCGCCGGTTATTACCGAC
81035701 G
1 G
81035702 ATTTGTAAAA
Statistics
Matches: 206, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
213 206 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (213 bp):
GGCTAGTGTTGCAAATTTTGCGGGATAAGCAGTTATATGCTAAGTTCAGTAAGTGTGAGTTCTGG
TTAAGAGAGGTTAGCTTCTTGGGTCATGTGGTATCCGCATCGGGTATTCGAGTTGACCCGAACAA
AATTTCAGCCATACTTAACTGGAAACCTCCAAGAAATATTACCGAAGTTCGGAGCTTCCTGGGAC
TCGCCGGTTATTACCGAC
Found at i:81035862 original size:14 final size:14
Alignment explanation
Indices: 81035840--81035871 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
81035830 CAATTCTAGT
81035840 GCAACCCGAATCAG
1 GCAACCCGAATCAG
*
81035854 GCAAGCCGAATCAG
1 GCAACCCGAATCAG
81035868 GCAA
1 GCAA
81035872 AGAGTTTGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.38, C:0.31, G:0.25, T:0.06
Consensus pattern (14 bp):
GCAACCCGAATCAG
Found at i:81041821 original size:42 final size:42
Alignment explanation
Indices: 81041687--81041845 Score: 183
Period size: 42 Copynumber: 3.8 Consensus size: 42
81041677 GAAAATATTA
*
81041687 GAGATAGCTTCGGCTATACATTGGCACTTAGTGTGCGAGATC
1 GAGATAGCTTCGGCTATACATTGGCACTTAGTGTACGAGATC
* * * *
81041729 GGGATAGCTTCAGCTATACATTAGCACTTAGTGTATGAGATC
1 GAGATAGCTTCGGCTATACATTGGCACTTAGTGTACGAGATC
* * * *
81041771 AAGATAGCTTCGGCTATGCATTGGCACTTAGTGTACGTGATT
1 GAGATAGCTTCGGCTATACATTGGCACTTAGTGTACGAGATC
* * * ***
81041813 GAGTTAGCTTTGGGTACGTATTGGCACTTAGTG
1 GAGATAGCTTCGGCTATACATTGGCACTTAGTG
81041846 AGCGATATTC
Statistics
Matches: 98, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 98 1.00
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (42 bp):
GAGATAGCTTCGGCTATACATTGGCACTTAGTGTACGAGATC
Found at i:81041955 original size:32 final size:32
Alignment explanation
Indices: 81041919--81041985 Score: 98
Period size: 32 Copynumber: 2.1 Consensus size: 32
81041909 TGAGTATGAG
* * *
81041919 ATTGGTACGAGATGGTACAAGTATGTACGAAA
1 ATTGGTACAAGATGGTACAAGTATGCACAAAA
*
81041951 ATTGGTACAAGATGGTATAAGTATGCACAAAA
1 ATTGGTACAAGATGGTACAAGTATGCACAAAA
81041983 ATT
1 ATT
81041986 CAATTGAGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.27
Consensus pattern (32 bp):
ATTGGTACAAGATGGTACAAGTATGCACAAAA
Found at i:81044044 original size:37 final size:37
Alignment explanation
Indices: 81043989--81044109 Score: 174
Period size: 37 Copynumber: 3.3 Consensus size: 37
81043979 TGTGAGTACG
*
81043989 TGTAAGACCATAGCTGGGCTATGGCATCGTAATAGCA
1 TGTAAGACCATAGCTGGGCTATGGCATCGTGATAGCA
*
81044026 TGTAAGACCATAGTTGGGCTATGGCATCGTGAT-GACA
1 TGTAAGACCATAGCTGGGCTATGGCATCGTGATAG-CA
* * *
81044063 TGTATGACCATAGCTGGGCTATGACATTGTGATA-CA
1 TGTAAGACCATAGCTGGGCTATGGCATCGTGATAGCA
81044099 TGTAAGACCAT
1 TGTAAGACCAT
81044110 TTTTGGGACA
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
36 13 0.17
37 62 0.83
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.27
Consensus pattern (37 bp):
TGTAAGACCATAGCTGGGCTATGGCATCGTGATAGCA
Found at i:81044116 original size:73 final size:74
Alignment explanation
Indices: 81043989--81044127 Score: 201
Period size: 74 Copynumber: 1.9 Consensus size: 74
81043979 TGTGAGTACG
*
81043989 TGTAAGACCATAGCTGGGCTATGGCATCGTAATAGCATGTAAGACCATAGTTGGG-CTATGGCAT
1 TGTAAGACCATAGCTGGGCTATGACATCGTAATAGCATGTAAGACCATAGTTGGGAC-ATGGCAT
81044053 CGTGATGACA
65 CGTGATGACA
* * * **
81044063 TGTATGACCATAGCTGGGCTATGACATTGTGATA-CATGTAAGACCATTTTTGGGACATGGCATC
1 TGTAAGACCATAGCTGGGCTATGACATCGTAATAGCATGTAAGACCATAGTTGGGACATGGCATC
81044127 G
66 G
81044128 ATATGAGATC
Statistics
Matches: 58, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
73 27 0.47
74 31 0.53
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.28
Consensus pattern (74 bp):
TGTAAGACCATAGCTGGGCTATGACATCGTAATAGCATGTAAGACCATAGTTGGGACATGGCATC
GTGATGACA
Found at i:81044156 original size:41 final size:42
Alignment explanation
Indices: 81044099--81044188 Score: 112
Period size: 41 Copynumber: 2.2 Consensus size: 42
81044089 TTGTGATACA
*
81044099 TGTAAGACCATTTTTGGGACATGGCATC-GATATGAGA-TCCG
1 TGTAAGACCATATTTGGGACATGGCATCAG-TATGAGATTCCG
* * * *
81044140 TGTAAGACTATATTTGGGATATGGCTTCAGTATGAGATTTCG
1 TGTAAGACCATATTTGGGACATGGCATCAGTATGAGATTCCG
81044182 TGTAAGA
1 TGTAAGA
81044189 TCGTGTCTGG
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
41 31 0.74
42 11 0.26
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.33
Consensus pattern (42 bp):
TGTAAGACCATATTTGGGACATGGCATCAGTATGAGATTCCG
Found at i:81045810 original size:42 final size:42
Alignment explanation
Indices: 81045676--81045834 Score: 183
Period size: 42 Copynumber: 3.8 Consensus size: 42
81045666 GGAAATATTT
*
81045676 GAGATAGCTTCGGCTATACATTGGCACTTAGTGTGCGAGATC
1 GAGATAGCTTCGGCTATACATTGGCACTTAGTGTACGAGATC
* * * *
81045718 GGGATAGCTTCAGCTATACATTAGCACTTAGTGTATGAGATC
1 GAGATAGCTTCGGCTATACATTGGCACTTAGTGTACGAGATC
* * * *
81045760 AAGATAGCTTCGGCTATGCATTGGCACTTAGTGTACGTGATT
1 GAGATAGCTTCGGCTATACATTGGCACTTAGTGTACGAGATC
* * * ***
81045802 GAGTTAGCTTTGGGTACGTATTGGCACTTAGTG
1 GAGATAGCTTCGGCTATACATTGGCACTTAGTG
81045835 AGCGATATTC
Statistics
Matches: 98, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 98 1.00
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (42 bp):
GAGATAGCTTCGGCTATACATTGGCACTTAGTGTACGAGATC
Found at i:81045944 original size:32 final size:32
Alignment explanation
Indices: 81045908--81045974 Score: 98
Period size: 32 Copynumber: 2.1 Consensus size: 32
81045898 TGAGTATGAG
* * *
81045908 ATTGGTACGAGATGGTACAAGTATGTACGAAA
1 ATTGGTACAAGATGGTACAAGTATGCACAAAA
*
81045940 ATTGGTACAAGATGGTATAAGTATGCACAAAA
1 ATTGGTACAAGATGGTACAAGTATGCACAAAA
81045972 ATT
1 ATT
81045975 CAATTGAGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.27
Consensus pattern (32 bp):
ATTGGTACAAGATGGTACAAGTATGCACAAAA
Found at i:81046684 original size:37 final size:37
Alignment explanation
Indices: 81046629--81046749 Score: 174
Period size: 37 Copynumber: 3.3 Consensus size: 37
81046619 TGTGAGTACG
*
81046629 TGTAAGACCATAGCTGGGCTATGGCATCGTAATAGCA
1 TGTAAGACCATAGCTGGGCTATGGCATCGTGATAGCA
*
81046666 TGTAAGACCATAGTTGGGCTATGGCATCGTGAT-GACA
1 TGTAAGACCATAGCTGGGCTATGGCATCGTGATAG-CA
* * *
81046703 TGTATGACCATAGCTGGGCTATGACATTGTGATA-CA
1 TGTAAGACCATAGCTGGGCTATGGCATCGTGATAGCA
81046739 TGTAAGACCAT
1 TGTAAGACCAT
81046750 TTTTGGGACA
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
36 13 0.17
37 62 0.83
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.27
Consensus pattern (37 bp):
TGTAAGACCATAGCTGGGCTATGGCATCGTGATAGCA
Found at i:81046756 original size:73 final size:74
Alignment explanation
Indices: 81046629--81046767 Score: 201
Period size: 74 Copynumber: 1.9 Consensus size: 74
81046619 TGTGAGTACG
*
81046629 TGTAAGACCATAGCTGGGCTATGGCATCGTAATAGCATGTAAGACCATAGTTGGG-CTATGGCAT
1 TGTAAGACCATAGCTGGGCTATGACATCGTAATAGCATGTAAGACCATAGTTGGGAC-ATGGCAT
81046693 CGTGATGACA
65 CGTGATGACA
* * * **
81046703 TGTATGACCATAGCTGGGCTATGACATTGTGATA-CATGTAAGACCATTTTTGGGACATGGCATC
1 TGTAAGACCATAGCTGGGCTATGACATCGTAATAGCATGTAAGACCATAGTTGGGACATGGCATC
81046767 G
66 G
81046768 ATATGAGATC
Statistics
Matches: 58, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
73 27 0.47
74 31 0.53
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.28
Consensus pattern (74 bp):
TGTAAGACCATAGCTGGGCTATGACATCGTAATAGCATGTAAGACCATAGTTGGGACATGGCATC
GTGATGACA
Found at i:81046796 original size:41 final size:42
Alignment explanation
Indices: 81046739--81046830 Score: 116
Period size: 41 Copynumber: 2.2 Consensus size: 42
81046729 TTGTGATACA
*
81046739 TGTAAGACCATTTTTGGGACATGGCATC-GATATGAGA-TCCG
1 TGTAAGACCATATTTGGGACATGGCATCAG-TATGAGATTCCG
* * * *
81046780 TGTAAGACTATATTTGGGATATGGCTTCAGTATGAGATTTCG
1 TGTAAGACCATATTTGGGACATGGCATCAGTATGAGATTCCG
81046822 TGTAAGACC
1 TGTAAGACC
81046831 GTGTCTGGGA
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
41 31 0.72
42 12 0.28
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (42 bp):
TGTAAGACCATATTTGGGACATGGCATCAGTATGAGATTCCG
Found at i:81050845 original size:13 final size:13
Alignment explanation
Indices: 81050823--81050855 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
81050813 CTAAATTAAT
*
81050823 TTATTGAATGAAA
1 TTATTAAATGAAA
81050836 TTATTAAATGAAA
1 TTATTAAATGAAA
81050849 TTATTAA
1 TTATTAA
81050856 TTTAGATCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.42
Consensus pattern (13 bp):
TTATTAAATGAAA
Found at i:81051092 original size:42 final size:42
Alignment explanation
Indices: 81051031--81051194 Score: 197
Period size: 42 Copynumber: 3.9 Consensus size: 42
81051021 GGAAATATTT
81051031 GAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATC
1 GAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATC
* * * *
81051073 GGGATAGCTTTGGCTATGCATTAGCACTTAGTATGCGAGATC
1 GAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATC
* * * *
81051115 AAGATAGCTTTGGCTATGCATTGACACTTAGTGTGC-ATGATT
1 GAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGA-GATC
* * *
81051157 GAGTTAGCTTCGGCTACT-TATTGGCACTTAGTGAGCGA
1 GAGATAGCTTCGGCTA-TGCATTGGCACTTAGTGTGCGA
81051195 TATTCCTGAG
Statistics
Matches: 103, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
41 1 0.01
42 100 0.97
43 2 0.02
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (42 bp):
GAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATC
Found at i:81051299 original size:32 final size:32
Alignment explanation
Indices: 81051263--81051329 Score: 98
Period size: 32 Copynumber: 2.1 Consensus size: 32
81051253 TGAGTATGAG
* * *
81051263 ATTGGTACGAGATGGTACAAGTATGTACGAAA
1 ATTGGTACAAGATGGTACAAGTATGCACAAAA
*
81051295 ATTGGTACAAGATGGTATAAGTATGCACAAAA
1 ATTGGTACAAGATGGTACAAGTATGCACAAAA
81051327 ATT
1 ATT
81051330 CAATTGAGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.27
Consensus pattern (32 bp):
ATTGGTACAAGATGGTACAAGTATGCACAAAA
Found at i:81067037 original size:13 final size:13
Alignment explanation
Indices: 81067019--81067043 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81067009 GGTTTGTTTA
81067019 TTAAACTAATTAT
1 TTAAACTAATTAT
81067032 TTAAACTAATTA
1 TTAAACTAATTA
81067044 ACTAATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:81068991 original size:6 final size:5
Alignment explanation
Indices: 81068966--81069058 Score: 73
Period size: 6 Copynumber: 17.2 Consensus size: 5
81068956 TATGTCTTTC
* *
81068966 AAAAT AAAA- AAAATT TAAAT GAAAAT AAAAAT CAAAAGA AAAAT AAGAAT
1 AAAAT AAAAT AAAA-T AAAAT -AAAAT -AAAAT -AAAA-T AAAAT AA-AAT
81069016 AAAAT AAAAT AAAAT AAAAAT AAGAAT -AAAT AAAAAT AAAAT A
1 AAAAT AAAAT AAAAT -AAAAT AA-AAT AAAAT -AAAAT AAAAT A
81069059 GGAGGATTCA
Statistics
Matches: 73, Mismatches: 6, Indels: 18
0.75 0.06 0.19
Matches are distributed among these distances:
4 7 0.10
5 29 0.40
6 37 0.51
ACGTcount: A:0.76, C:0.01, G:0.04, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:81068997 original size:27 final size:28
Alignment explanation
Indices: 81068966--81069056 Score: 109
Period size: 27 Copynumber: 3.3 Consensus size: 28
81068956 TATGTCTTTC
* *
81068966 AAAATAAAA-AAAATTTA-AATGAAAATA
1 AAAATAAAAGAAAAATAAGAAT-AAAATA
81068993 AAAATCAAAAGAAAAATAAGAATAAAAT-
1 AAAAT-AAAAGAAAAATAAGAATAAAATA
*
81069021 AAAATAAAATAAAAATAAGAAT-AAATA
1 AAAATAAAAGAAAAATAAGAATAAAATA
81069048 AAAATAAAA
1 AAAATAAAA
81069057 TAGGAGGATT
Statistics
Matches: 57, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
26 4 0.07
27 30 0.53
28 9 0.16
29 11 0.19
30 3 0.05
ACGTcount: A:0.77, C:0.01, G:0.04, T:0.18
Consensus pattern (28 bp):
AAAATAAAAGAAAAATAAGAATAAAATA
Found at i:81069031 original size:21 final size:21
Alignment explanation
Indices: 81069006--81069058 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
81068996 ATCAAAAGAA
81069006 AAATAAGAATAA-AATAAA-ATA
1 AAATAA-AATAAGAATAAATA-A
81069027 AAATAAAAATAAGAATAAATAA
1 AAAT-AAAATAAGAATAAATAA
81069049 AAATAAAATA
1 AAATAAAATA
81069059 GGAGGATTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
21 15 0.52
22 13 0.45
23 1 0.03
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (21 bp):
AAATAAAATAAGAATAAATAA
Found at i:81075087 original size:28 final size:27
Alignment explanation
Indices: 81075028--81075099 Score: 72
Period size: 28 Copynumber: 2.6 Consensus size: 27
81075018 GTTCTGGTGG
* * * * *
81075028 CTCTGCCACAAATATCTGTTTTTGGTGG
1 CTCTGCCAC-AATATCTATATCTAGTGA
81075056 CTCTGCCACAATTATCTATATCTAGTGA
1 CTCTGCCACAA-TATCTATATCTAGTGA
*
81075084 CTCTGTCACAATATCT
1 CTCTGCCACAATATCT
81075100 GTTCTAGAAG
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
27 7 0.19
28 30 0.81
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.38
Consensus pattern (27 bp):
CTCTGCCACAATATCTATATCTAGTGA
Found at i:81081825 original size:27 final size:28
Alignment explanation
Indices: 81081787--81081898 Score: 140
Period size: 28 Copynumber: 4.1 Consensus size: 28
81081777 GGAAGCGTTA
81081787 TGGTGGCTCTGCCACAAATATTTG-ATC
1 TGGTGGCTCTGCCACAAATATTTGTATC
*
81081814 TGGTGGCTCTGCCACAAATATTTGTTTC
1 TGGTGGCTCTGCCACAAATATTTGTATC
* * *
81081842 TGGTGGCTCTGCCACAATTATCTGTATT
1 TGGTGGCTCTGCCACAAATATTTGTATC
* **
81081870 TGGTGACTCTATCAC-AATATTTGT-TC
1 TGGTGGCTCTGCCACAAATATTTGTATC
81081896 TGG
1 TGG
81081899 AAGCCATGCT
Statistics
Matches: 73, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
26 4 0.05
27 31 0.42
28 38 0.52
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (28 bp):
TGGTGGCTCTGCCACAAATATTTGTATC
Found at i:81081889 original size:55 final size:54
Alignment explanation
Indices: 81081787--81081898 Score: 145
Period size: 55 Copynumber: 2.1 Consensus size: 54
81081777 GGAAGCGTTA
* * *
81081787 TGGTGGCTCTGCCACAAATATTTGATCTGGTGGCTCTGCCACAAATATTTGTTTC
1 TGGTGGCTCTGCCACAAATATCTGATCTGGTGACTCTACCACAAATATTTG-TTC
* * *
81081842 TGGTGGCTCTGCCACAATTATCTGTATTTGGTGACTCTATCAC-AATATTTGTTC
1 TGGTGGCTCTGCCACAAATATCTG-ATCTGGTGACTCTACCACAAATATTTGTTC
81081896 TGG
1 TGG
81081899 AAGCCATGCT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
54 6 0.12
55 30 0.60
56 14 0.28
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (54 bp):
TGGTGGCTCTGCCACAAATATCTGATCTGGTGACTCTACCACAAATATTTGTTC
Found at i:81083936 original size:13 final size:13
Alignment explanation
Indices: 81083918--81083942 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81083908 GGTTTGTTTA
81083918 TTAAACTAATTAT
1 TTAAACTAATTAT
81083931 TTAAACTAATTA
1 TTAAACTAATTA
81083943 ACTAATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Done.