Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 245 of 276
Found at i:81085816 original size:28 final size:28
Alignment explanation
Indices: 81085734--81085821 Score: 121
Period size: 28 Copynumber: 3.3 Consensus size: 28
81085724 CATGGTTAGA
*
81085734 CCATGGCAATGTGCTAAGTGAAATAAGA
1 CCATGGCAATGTGCTAAGTGAAATAAGT
*
81085762 CCATGGCAA----CTGAGTGAAATAAGT
1 CCATGGCAATGTGCTAAGTGAAATAAGT
*
81085786 CCATGGCAATGTGCTAAATGAAATAAGT
1 CCATGGCAATGTGCTAAGTGAAATAAGT
81085814 CCATGGCA
1 CCATGGCA
81085822 TCTTTGTGCT
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
24 22 0.42
28 30 0.58
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.22
Consensus pattern (28 bp):
CCATGGCAATGTGCTAAGTGAAATAAGT
Found at i:81086111 original size:51 final size:51
Alignment explanation
Indices: 81085861--81086110 Score: 358
Period size: 51 Copynumber: 4.9 Consensus size: 51
81085851 TGAACCTTAG
* *
81085861 GAATAAAATAGCTTTGGACACAAGTGTGGTACAATGTGAAGGCCACTTTTT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* * *
81085912 GAATATAATAGCTTTGGACACAAGTGTGGTACTATTTGAAGACCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* * * *
81085963 AAATATAATAGATTTGGACACAAGTGTGGTACTATGTGAAGGCCGCTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* * *
81086014 GAATAAAATAGCTTTGGACACAAGTGTGGTACTTTGTGAAGGCCACCTCGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
81086065 GAATAAAATAGCTTTGG-CTACAAGGGTGGTACTATGTGAAAGCCAC
1 GAATAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCCAC
81086111 CGTGTATCTG
Statistics
Matches: 178, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
50 1 0.01
51 177 0.99
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.29
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:81095199 original size:27 final size:27
Alignment explanation
Indices: 81095099--81095203 Score: 108
Period size: 27 Copynumber: 3.9 Consensus size: 27
81095089 AGGAAGCGTC
* *
81095099 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGTCACAA-TATCTGTAT
*
81095126 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGTCACA-ATATCTGTAT
* *
81095153 CTGGTGGCTCTGTAATAATATCTGTAT
1 CTGGTGGCTCTGTCACAATATCTGTAT
*
81095180 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GTCACAATATCTG
81095204 GCATCCTTGT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
26 9 0.13
27 57 0.85
28 1 0.01
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGTCACAATATCTGTAT
Found at i:81099383 original size:93 final size:93
Alignment explanation
Indices: 81099258--81100165 Score: 1703
Period size: 93 Copynumber: 9.8 Consensus size: 93
81099248 AGTGATCTCT
* * * * * *
81099258 GACTCAACTCAACGAGCTCAGG-CGTTCACATCCATAAGTGAACTCGGACTCAACTCAACGAGTT
1 GACTCAACTTAACGAGTTC-GGACATTCGCATCCATAGGTTAACTCGGACTCAACTCAACGAGTT
81099322 CGGATGCCTAGTTACATCTCACGAACTCG
65 CGGATGCCTAGTTACATCTCACGAACTCG
81099351 GACTCAACTTAACGAGTTCGGACATTCGCATCCATAGGTTAACTCGGACTCAACTCAACGAGTTC
1 GACTCAACTTAACGAGTTCGGACATTCGCATCCATAGGTTAACTCGGACTCAACTCAACGAGTTC
***
81099416 GGATG-CTCAACCACATCTCACGAACTCG
66 GGATGCCT-AGTTACATCTCACGAACTCG
81099444 GACTCAACTTAACGAGTTCGGACATTCGCATCCATAGGTTAACTCGGACTCAACTCAACGAGTTC
1 GACTCAACTTAACGAGTTCGGACATTCGCATCCATAGGTTAACTCGGACTCAACTCAACGAGTTC
81099509 GGATGCCTAGTTACATCTCACGAACTCG
66 GGATGCCTAGTTACATCTCACGAACTCG
81099537 GACTCAACTTAACGAGTTCGGACATTCGCATCCATAGGTTAACTCGGACTCAACTCAACGAGTTC
1 GACTCAACTTAACGAGTTCGGACATTCGCATCCATAGGTTAACTCGGACTCAACTCAACGAGTTC
81099602 GGATGCCTAGTTACATCTCACGAACTCG
66 GGATGCCTAGTTACATCTCACGAACTCG
81099630 GACTCAACTTAACGAGTTCGGACATTCGCATCCATAGGTTAACTCGGACTCAACTCAACGAGTTC
1 GACTCAACTTAACGAGTTCGGACATTCGCATCCATAGGTTAACTCGGACTCAACTCAACGAGTTC
81099695 GGATGCCTAGTTACATCTCACGAACTCG
66 GGATGCCTAGTTACATCTCACGAACTCG
81099723 GACTCAACTTAACGAGTTCGGACATTCGCATCCATAGGTTAACTCGGACTCAACTCAACGAGTTC
1 GACTCAACTTAACGAGTTCGGACATTCGCATCCATAGGTTAACTCGGACTCAACTCAACGAGTTC
81099788 GGATGCCTAGTTACATCTCACGAACTCG
66 GGATGCCTAGTTACATCTCACGAACTCG
81099816 GACTCAACTTAACGAGTTCGGACATTCGCATCCATAGGTTAACTCGGACTCAACTCAACGAGTTC
1 GACTCAACTTAACGAGTTCGGACATTCGCATCCATAGGTTAACTCGGACTCAACTCAACGAGTTC
81099881 GGATGCCTAGTTACATCTCACGAACTCG
66 GGATGCCTAGTTACATCTCACGAACTCG
81099909 GACTCAACTTAACGAGTTCGGACATTCGCATCCATAGGTTAACTCGGACTCAACTCAACGAGTTC
1 GACTCAACTTAACGAGTTCGGACATTCGCATCCATAGGTTAACTCGGACTCAACTCAACGAGTTC
81099974 GGATGCCTAGTTACATCTCACGAACTCG
66 GGATGCCTAGTTACATCTCACGAACTCG
81100002 GACTCAACTTAACGAGTTCGGACATTCGCATCCATAGGTTAACTCGGACTCAACTCAACGAGTTC
1 GACTCAACTTAACGAGTTCGGACATTCGCATCCATAGGTTAACTCGGACTCAACTCAACGAGTTC
81100067 GGATGCCTAGTTACATCTCACGAACTCG
66 GGATGCCTAGTTACATCTCACGAACTCG
81100095 GACTCAACTTAACGAGTTCGGACATTCGCATCCATAGGTTAACTCGGACTCAACTCAACGAGTTC
1 GACTCAACTTAACGAGTTCGGACATTCGCATCCATAGGTTAACTCGGACTCAACTCAACGAGTTC
81100160 GGATGC
66 GGATGC
81100166 TCAACCATCC
Statistics
Matches: 800, Mismatches: 12, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
92 4 0.00
93 794 0.99
94 2 0.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.24
Consensus pattern (93 bp):
GACTCAACTTAACGAGTTCGGACATTCGCATCCATAGGTTAACTCGGACTCAACTCAACGAGTTC
GGATGCCTAGTTACATCTCACGAACTCG
Found at i:81106412 original size:47 final size:45
Alignment explanation
Indices: 81106350--81106662 Score: 281
Period size: 47 Copynumber: 6.8 Consensus size: 45
81106340 CATCCATAAG
81106350 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTTAGTT-ACATCTCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGC-TA-TTCACATC-CA
* *
81106397 TGAACTCGGACTCAACTTAACGAGTTCGGA--C-ATTCTCATCCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTATTCACATCCA
81106439 TAGGTTAACTCGGACTCAACTCAACGAGTTCGGATGCTTAGTT-ACATCTCA
1 T--G--AACTCGGACTCAACTCAACGAGTTCGGATGC-TA-TTCACATC-CA
* * *
81106490 TGAACTCGGACTCAACTTAACGAGGTCGGA--C-ATTCTCATCCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTATTCACATCCA
81106532 TAGGTTAACTCGGACTCAACTCAACGAGTTCGGATGCTTAGTT-ACATCTCA
1 T--G--AACTCGGACTCAACTCAACGAGTTCGGATGC-TA-TTCACATC-CA
* * *
81106583 TGAACTCGGACTCAACTTAACGAGGTCGGA--C-ATTCTCATCCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTATTCACATCCA
81106625 TAGGTTAACTCGGACTCAACTCAACGAGTTCGGATGCT
1 T--G--AACTCGGACTCAACTCAACGAGTTCGGATGCT
81106663 CAACCATCCT
Statistics
Matches: 221, Mismatches: 15, Indels: 58
0.75 0.05 0.20
Matches are distributed among these distances:
42 15 0.07
43 15 0.07
44 3 0.01
45 3 0.01
46 79 0.36
47 81 0.37
48 3 0.01
49 2 0.01
50 10 0.05
51 10 0.05
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGCTATTCACATCCA
Found at i:81106419 original size:93 final size:93
Alignment explanation
Indices: 81106304--81106662 Score: 630
Period size: 93 Copynumber: 3.9 Consensus size: 93
81106294 CGCCCCTAAG
* * * * * * *
81106304 TGAACTCTGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 TGAACTCGGACTCAACTTAACGAGGTC-GGACATTCTCATCCATAGGTTAACTCGGACTCAACTC
81106368 AACGAGTTCGGATGCTTAGTTACATCTCA
65 AACGAGTTCGGATGCTTAGTTACATCTCA
*
81106397 TGAACTCGGACTCAACTTAACGAGTTCGGACATTCTCATCCATAGGTTAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTTAACGAGGTCGGACATTCTCATCCATAGGTTAACTCGGACTCAACTCA
81106462 ACGAGTTCGGATGCTTAGTTACATCTCA
66 ACGAGTTCGGATGCTTAGTTACATCTCA
81106490 TGAACTCGGACTCAACTTAACGAGGTCGGACATTCTCATCCATAGGTTAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTTAACGAGGTCGGACATTCTCATCCATAGGTTAACTCGGACTCAACTCA
81106555 ACGAGTTCGGATGCTTAGTTACATCTCA
66 ACGAGTTCGGATGCTTAGTTACATCTCA
81106583 TGAACTCGGACTCAACTTAACGAGGTCGGACATTCTCATCCATAGGTTAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTTAACGAGGTCGGACATTCTCATCCATAGGTTAACTCGGACTCAACTCA
81106648 ACGAGTTCGGATGCT
66 ACGAGTTCGGATGCT
81106663 CAACCATCCT
Statistics
Matches: 257, Mismatches: 8, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
92 2 0.01
93 255 0.99
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (93 bp):
TGAACTCGGACTCAACTTAACGAGGTCGGACATTCTCATCCATAGGTTAACTCGGACTCAACTCA
ACGAGTTCGGATGCTTAGTTACATCTCA
Found at i:81106658 original size:46 final size:44
Alignment explanation
Indices: 81106306--81106658 Score: 285
Period size: 46 Copynumber: 7.6 Consensus size: 44
81106296 CCCCTAAGTG
* * * *
81106306 AACTCTGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGT
1 AACTCGGACTCAACTCAACGAGTTC-GGACATTCACATCCAT-AGT
81106351 GAACTCGGACTCAACTCAACGAGTTCGGATGCTTAGTT-ACATCTCAT-G-
1 -AACTCGGACTCAACTCAACGAGTTCGGA--C--A-TTCACATC-CATAGT
* *
81106399 AACTCGGACTCAACTTAACGAGTTCGGACATTCTCATCCATAGGTT
1 AACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATA-G-T
81106445 AACTCGGACTCAACTCAACGAGTTCGGATGCTTAGTT-ACATCTCAT-G-
1 AACTCGGACTCAACTCAACGAGTTCGGA--C--A-TTCACATC-CATAGT
* * *
81106492 AACTCGGACTCAACTTAACGAGGTCGGACATTCTCATCCATAGGTT
1 AACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATA-G-T
81106538 AACTCGGACTCAACTCAACGAGTTCGGATGCTTAGTT-ACATCTCAT-G-
1 AACTCGGACTCAACTCAACGAGTTCGGA--C--A-TTCACATC-CATAGT
* * *
81106585 AACTCGGACTCAACTTAACGAGGTCGGACATTCTCATCCATAGGTT
1 AACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATA-G-T
81106631 AACTCGGACTCAACTCAACGAGTTCGGA
1 AACTCGGACTCAACTCAACGAGTTCGGA
81106659 TGCTCAACCA
Statistics
Matches: 254, Mismatches: 19, Indels: 68
0.74 0.06 0.20
Matches are distributed among these distances:
42 15 0.06
43 15 0.06
44 3 0.01
45 5 0.02
46 102 0.40
47 79 0.31
48 3 0.01
49 3 0.01
50 14 0.06
51 15 0.06
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (44 bp):
AACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAGT
Found at i:81119184 original size:49 final size:48
Alignment explanation
Indices: 81119122--81120336 Score: 2106
Period size: 49 Copynumber: 25.1 Consensus size: 48
81119112 TTAAATGAGT
81119122 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGA
81119169 TAAGGCCTCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGG-C-CTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGA
81119220 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGA
81119269 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGA
81119318 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGA
81119367 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGA
81119416 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGA
81119465 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGA
81119514 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGA
81119563 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGA
81119612 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGA
81119661 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGA
81119710 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGA
81119759 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGA
81119808 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGA
81119857 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGA
81119906 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGA
81119955 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGA
81120004 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGA
* * *
81120051 TAAGGCCAAATAGCCGATGTGATGAATGTGAAAGTG-TATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGA
81120098 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGA
81120145 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGA
81120192 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGA
81120239 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGA
* * * * * *
81120286 CAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATA-A-ATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGA
81120333 TAAG
1 TAAG
81120337 TCCCGAAGGG
Statistics
Matches: 1148, Mismatches: 14, Indels: 12
0.98 0.01 0.01
Matches are distributed among these distances:
47 283 0.25
48 2 0.00
49 846 0.74
50 1 0.00
51 16 0.01
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (48 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGA
Found at i:81120511 original size:37 final size:37
Alignment explanation
Indices: 81120455--81120533 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
81120445 CCGAGCTCTA
* *
81120455 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
81120492 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
81120529 AAGAC
1 AAGAC
81120534 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:81124023 original size:46 final size:46
Alignment explanation
Indices: 81123953--81124133 Score: 170
Period size: 46 Copynumber: 3.9 Consensus size: 46
81123943 CGATATGTGT
* * *
81123953 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCATTGCGACGAGG
1 GCTAGTGTAAGACATGTTTTGGACATGCATCGGCATTGAGACGAGA
* ** * *
81123999 GCTAGTGTAAGACATGTTTTGGACATGAATCAACTTTGAGATACTTA-A
1 GCTAGTGTAAGACATGTTTTGGACATGCATCGGCATTGAG--AC-GAGA
* ** *
81124047 GCTACTGTAAGACATGTCAAT-GACATGTATCGGCATTGAGACGAGA
1 GCTAGTGTAAGACATGT-TTTGGACATGCATCGGCATTGAGACGAGA
* *
81124093 GCTAGTGTAAGACATG-TTTGGAACATGCATCAGCCTTGAGA
1 GCTAGTGTAAGACATGTTTTGG-ACATGCATCGGCATTGAGA
81124134 TATTGAAGCC
Statistics
Matches: 106, Mismatches: 22, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
44 1 0.01
45 2 0.02
46 68 0.64
48 33 0.31
49 2 0.02
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTTTTGGACATGCATCGGCATTGAGACGAGA
Found at i:81124119 original size:94 final size:94
Alignment explanation
Indices: 81123974--81124159 Score: 261
Period size: 94 Copynumber: 2.0 Consensus size: 94
81123964 ACATGTTTGG
* * *
81123974 GACATGCATCGGCATTGCGACGAGGGCTAGTGTAAGACATGTTTTGGACATGAATCAACTTTGAG
1 GACATGCATCGGCATTGAGACGAGAGCTAGTGTAAGACATGTTTTGGACATGAATCAACCTTGAG
81124039 ATACTT-AAGCTAC-TGTAAGACATGTCAAT
66 ATA-TTGAAGC-ACGTGTAAGACATGTCAAT
* * *
81124068 GACATGTATCGGCATTGAGACGAGAGCTAGTGTAAGACATG-TTTGGAACATGCATCAGCCTTGA
1 GACATGCATCGGCATTGAGACGAGAGCTAGTGTAAGACATGTTTTGG-ACATGAATCAACCTTGA
*
81124132 GATATTGAAGCCCGTGTAAGACATGTCA
65 GATATTGAAGCACGTGTAAGACATGTCA
81124160 GGGATATGCA
Statistics
Matches: 82, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
93 8 0.10
94 74 0.90
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (94 bp):
GACATGCATCGGCATTGAGACGAGAGCTAGTGTAAGACATGTTTTGGACATGAATCAACCTTGAG
ATATTGAAGCACGTGTAAGACATGTCAAT
Found at i:81124263 original size:48 final size:48
Alignment explanation
Indices: 81123953--81124265 Score: 211
Period size: 48 Copynumber: 6.6 Consensus size: 48
81123943 CGATATGTGT
** * * * *
81123953 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCATTGCGA-CGAG-G
1 GCTAGTGTAAGACATGTTTGGGACATGCATTAGCCTTGTGATAGAGAA
* * * * * * ***
81123999 GCTAGTGTAAGACATGTTTTGGACATGAATCAACTTTGAGATACTTAA
1 GCTAGTGTAAGACATGTTTGGGACATGCATTAGCCTTGTGATAGAGAA
* **** * ** * * *
81124047 GCTACTGTAAGACATGTCAATGACATGTATCGGCATTGAGA-CGAG-A
1 GCTAGTGTAAGACATGTTTGGGACATGCATTAGCCTTGTGATAGAGAA
* * * **
81124093 GCTAGTGTAAGACATGTTTGGAACATGCATCAGCCTTGAGATATTGAA
1 GCTAGTGTAAGACATGTTTGGGACATGCATTAGCCTTGTGATAGAGAA
** ** *
81124141 GCCCGTGTAAGACATGTCAGGGATATGCATTAGCCTTGTGATAGATGAGA
1 GCTAGTGTAAGACATGTTTGGGACATGCATTAGCCTTGTGATAGA-GA-A
* * *
81124191 ACTAGTGTATGACATGTTTGGGACATGCATTAGCCTTGTGATAGACAA
1 GCTAGTGTAAGACATGTTTGGGACATGCATTAGCCTTGTGATAGAGAA
* *
81124239 GCTAGTGTAAAACCTGTTTGGGACATG
1 GCTAGTGTAAGACATGTTTGGGACATG
81124266 GTGTCAGCTT
Statistics
Matches: 203, Mismatches: 58, Indels: 10
0.75 0.21 0.04
Matches are distributed among these distances:
46 68 0.33
47 1 0.00
48 92 0.45
49 3 0.01
50 39 0.19
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.28
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTTTGGGACATGCATTAGCCTTGTGATAGAGAA
Found at i:81128722 original size:14 final size:16
Alignment explanation
Indices: 81128698--81128730 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
81128688 ATTTTTTGTG
81128698 TTTATTATGTGT-AAA
1 TTTATTATGTGTGAAA
81128713 TTTA-TATGTGTGAAA
1 TTTATTATGTGTGAAA
81128728 TTT
1 TTT
81128731 TCGTGATCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (16 bp):
TTTATTATGTGTGAAA
Found at i:81132226 original size:46 final size:46
Alignment explanation
Indices: 81132173--81132345 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
81132163 TGGTTGAGCA
*
81132173 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * * *
81132219 TCTGAACTAGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
81132266 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
81132312 CCCGAGCTCTTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
81132346 GGGGCAGGTT
Statistics
Matches: 102, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 59 0.58
47 27 0.26
48 2 0.02
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:81132329 original size:93 final size:93
Alignment explanation
Indices: 81132170--81132340 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
81132160 GGATGGTTGA
* * *
81132170 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTAGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTAGTTGAGT
81132235 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * **
81132263 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGCCCGAGCTCTTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTAGTTGAGT
81132328 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
81132341 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTAGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:81139842 original size:46 final size:46
Alignment explanation
Indices: 81139792--81139967 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
81139782 TGGTTGAGCA
81139792 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
81139838 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
81139883 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
81139931 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81139968 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 28 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:81139948 original size:93 final size:93
Alignment explanation
Indices: 81139789--81139959 Score: 324
Period size: 93 Copynumber: 1.8 Consensus size: 93
81139779 GGATGGTTGA
* *
81139789 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
81139854 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
81139882 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
81139947 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
81139960 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:81142177 original size:34 final size:33
Alignment explanation
Indices: 81142135--81142214 Score: 115
Period size: 34 Copynumber: 2.4 Consensus size: 33
81142125 TTATTTGCAT
81142135 ACTGTACTGAAATGGGCTAAGGCCCAGACTGCC
1 ACTGTACTGAAATGGGCTAAGGCCCAGACTGCC
* *
81142168 ACTGTTACTGAAATGGGCTCAGGCCCAGACTGCT
1 ACTG-TACTGAAATGGGCTAAGGCCCAGACTGCC
*
81142202 ACTACTACTGAAA
1 ACT-GTACTGAAA
81142215 GAGGCGCTAA
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
33 4 0.10
34 38 0.90
ACGTcount: A:0.29, C:0.26, G:0.24, T:0.21
Consensus pattern (33 bp):
ACTGTACTGAAATGGGCTAAGGCCCAGACTGCC
Found at i:81142931 original size:55 final size:56
Alignment explanation
Indices: 81142866--81143000 Score: 227
Period size: 56 Copynumber: 2.4 Consensus size: 56
81142856 ACCATGGCAT
*
81142866 CGATATATGTGGGCGAGTAAGACCACGTTTAATA-GTTGGCATCGATATGTGACTC
1 CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGACTC
*
81142921 CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATTGATATGTGACTC
1 CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGACTC
* *
81142977 TGACATATGTGTGCGAGTAAGACC
1 CGATATATGTGTGCGAGTAAGACC
81143001 TTGTCTGGGA
Statistics
Matches: 75, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
55 33 0.44
56 42 0.56
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (56 bp):
CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGACTC
Found at i:81143018 original size:56 final size:56
Alignment explanation
Indices: 81142870--81143027 Score: 185
Period size: 56 Copynumber: 2.8 Consensus size: 56
81142860 TGGCATCGAT
* * * *
81142870 ATATGTGGGCGAGTAAGACCACGTTTAATA-GTTGGCATCGATATGTGACTCCGAT
1 ATATGTGTGCGAGTAAGACCACGTCTAAGACGTTGGCATCGATATGTGACTCCGAC
* * * *
81142925 ATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATTGATATGTGACTCTGAC
1 ATATGTGTGCGAGTAAGACCACGTCTAAGACGTTGGCATCGATATGTGACTCCGAC
** **
81142981 ATATGTGTGCGAGTAAGACCTTGTCTGGGACAG-TGGCATCGATATGT
1 ATATGTGTGCGAGTAAGACCACGTCTAAGAC-GTTGGCATCGATATGT
81143028 AATTACATGT
Statistics
Matches: 90, Mismatches: 11, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
55 29 0.32
56 60 0.67
57 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (56 bp):
ATATGTGTGCGAGTAAGACCACGTCTAAGACGTTGGCATCGATATGTGACTCCGAC
Found at i:81157076 original size:27 final size:27
Alignment explanation
Indices: 81157042--81157234 Score: 246
Period size: 27 Copynumber: 7.2 Consensus size: 27
81157032 TACTGAAATT
**
81157042 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* * * *
81157069 CCCACGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTACAGAATTACCATTTTA
* * *
81157096 CCCTCGATTTACAAAATTACCGTTGTA
1 CCCTCGATTTACAGAATTACCATTTTA
*
81157123 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
*
81157150 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
*
81157177 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
*
81157204 CCCTC-AGTTTACA-AAATACCATTTTA
1 CCCTCGA-TTTACAGAATTACCATTTTA
81157230 CCCTC
1 CCCTC
81157235 AATTGTGAAA
Statistics
Matches: 147, Mismatches: 18, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
26 18 0.12
27 129 0.88
ACGTcount: A:0.29, C:0.26, G:0.08, T:0.36
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCATTTTA
Found at i:81157158 original size:81 final size:81
Alignment explanation
Indices: 81157042--81157234 Score: 291
Period size: 81 Copynumber: 2.4 Consensus size: 81
81157032 TACTGAAATT
* * *
81157042 CCCTCGATTTGTAGAATTACCATTTTACCCACGATTTATAGAATTACCGTTTCACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTA
*
81157107 CAAAATTACCGTTGTA
66 CAAAATTACCATTGTA
*
81157123 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTA
*
81157188 CAAAATTACCATTTTA
66 CAAAATTACCATTGTA
* *
81157204 CCCTC-AGTTTACA-AAATACCATTTTACCCTC
1 CCCTCGA-TTTATAGAATTACCATTTTACCCTC
81157235 AATTGTGAAA
Statistics
Matches: 103, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
80 18 0.17
81 85 0.83
ACGTcount: A:0.29, C:0.26, G:0.08, T:0.36
Consensus pattern (81 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTA
CAAAATTACCATTGTA
Found at i:81157300 original size:27 final size:27
Alignment explanation
Indices: 81157270--81157396 Score: 166
Period size: 27 Copynumber: 4.7 Consensus size: 27
81157260 TGTAGGATAG
81157270 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
*
81157297 AATTACCAAAATACCCCTAGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * * *
81157324 AATTATCGAAATACCACTGGTTTGTCA
1 AATTACCAAAATACCCCTAGTTTGTAA
*
81157351 AATTACCAAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
*
81157378 AATTACCAAAATACTCCTA
1 AATTACCAAAATACCCCTA
81157397 ATTTACAAAA
Statistics
Matches: 85, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 3 0.04
27 79 0.93
28 3 0.04
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:81157309 original size:54 final size:54
Alignment explanation
Indices: 81157237--81157366 Score: 138
Period size: 54 Copynumber: 2.4 Consensus size: 54
81157227 TTACCCTCAA
* ** *
81157237 TTGTGAAATTACTGAAATACCCCT-GTAGGAT-AGAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGTAGG-TGA-AATTACCAAAATACCACTAGT
** * * *
81157291 TTGTAAAATTACCAAAATACCCCTAGTTTGTGAAATTATCGAAATACCACTGGT
1 TTGTAAAATTACCAAAATACCCCTAGTAGGTGAAATTACCAAAATACCACTAGT
*
81157345 TTGTCAAATTACCAAAATACCC
1 TTGTAAAATTACCAAAATACCC
81157367 TCAATTTGTA
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
54 60 0.94
55 4 0.06
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (54 bp):
TTGTAAAATTACCAAAATACCCCTAGTAGGTGAAATTACCAAAATACCACTAGT
Found at i:81157355 original size:81 final size:81
Alignment explanation
Indices: 81157270--81157419 Score: 221
Period size: 81 Copynumber: 1.9 Consensus size: 81
81157260 TGTAGGATAG
* * *** *
81157270 AATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTGAAATTATCGAA
1 AATTACCAAAATACCCTC-AATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTATAGAA
81157334 ATACCACTGGTTTGTCA
65 ATACCACTGGTTTGTCA
*
81157351 AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACTCCTAATTTACAAAATTATAGAAA
1 AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTATAGAAA
81157416 TACC
66 TACC
81157420 CTTGACTTTT
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
81 60 0.98
82 1 0.02
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.30
Consensus pattern (81 bp):
AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTATAGAAA
TACCACTGGTTTGTCA
Found at i:81158493 original size:24 final size:24
Alignment explanation
Indices: 81158410--81158493 Score: 107
Period size: 25 Copynumber: 3.4 Consensus size: 24
81158400 GAGGAAGTGC
*
81158410 TAAAAGGGCTTTGCCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
* *
81158435 GAAAAGGGCTTTTCCCCAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
81158459 TAGAAAGGGCTTTGCCCCAG-TTAT
1 TA-AAAGGGCTTTGCCCCAGTTTAT
81158483 TAAAAGAGGCT
1 TAAAAG-GGCT
81158494 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.08
24 11 0.21
25 37 0.71
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:81158503 original size:25 final size:24
Alignment explanation
Indices: 81158448--81158507 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 24
81158438 AAGGGCTTTT
**
81158448 CCCCAGTTTATTAGAAAGGGCTTTG
1 CCCCAG-TTATTAGAAAGGGCTAGG
81158473 CCCCAGTTATTA-AAAGAGGCTAGG
1 CCCCAGTTATTAGAAAG-GGCTAGG
81158497 CCTCCAGTTAT
1 CC-CCAGTTAT
81158508 ATGATAAAGC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
23 4 0.13
24 13 0.42
25 14 0.45
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (24 bp):
CCCCAGTTATTAGAAAGGGCTAGG
Found at i:81158737 original size:31 final size:31
Alignment explanation
Indices: 81158699--81158804 Score: 185
Period size: 31 Copynumber: 3.4 Consensus size: 31
81158689 TGTTTACAGT
*
81158699 AAAGGCTTCGGTCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
81158730 AAAGGCTTCAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
81158761 AAAGGCTTCGGCCCAGAGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
81158792 AAAGGCTTCGGCC
1 AAAGGCTTCGGCC
81158805 TAGTAACCGT
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 71 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:81160004 original size:39 final size:39
Alignment explanation
Indices: 81159951--81160081 Score: 151
Period size: 39 Copynumber: 3.4 Consensus size: 39
81159941 ATACATTACT
81159951 AGCATA-AGCCTGCGGGTCTTTAACCCGAATATTTTTCC
1 AGCATATAGCCTGCGGGTCTTTAACCCGAATATTTTTCC
* * * * * * *
81159989 AGCACATAGCTTGC-GGACCTCAAGTCCGGATATTTTTCC
1 AGCATATAGCCTGCGGGTCTTTAA-CCCGAATATTTTTCC
*
81160028 AGC-TATAGCCTGCAGGTCTTTAACCCGAATATTTTTCC
1 AGCATATAGCCTGCGGGTCTTTAACCCGAATATTTTTCC
*
81160066 AACATATAGCCTGCGG
1 AGCATATAGCCTGCGG
81160082 ACCTCATGTC
Statistics
Matches: 73, Mismatches: 16, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
38 34 0.47
39 39 0.53
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (39 bp):
AGCATATAGCCTGCGGGTCTTTAACCCGAATATTTTTCC
Found at i:81160084 original size:77 final size:78
Alignment explanation
Indices: 81159957--81160104 Score: 235
Period size: 77 Copynumber: 1.9 Consensus size: 78
81159947 TACTAGCATA
* * *
81159957 AGCCTGCGGGTCTTTAACCCGAATATTTTTCCAGCACATAGCTTGCGGACCTCAAGTCCGGATAT
1 AGCCTGCAGGTCTTTAACCCGAATATTTTTCCAACACATAGCCTGCGGACCTCAAGTCCGGATAT
81160022 -TTTTCCAGCTAT
66 ATTTTCCAGCTAT
* * *
81160034 AGCCTGCAGGTCTTTAACCCGAATATTTTTCCAACATATAGCCTGCGGACCTCATGTCTGGATAT
1 AGCCTGCAGGTCTTTAACCCGAATATTTTTCCAACACATAGCCTGCGGACCTCAAGTCCGGATAT
81160099 ATTTTC
66 ATTTTC
81160105 AATCTCATAC
Statistics
Matches: 64, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
77 59 0.92
78 5 0.08
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.32
Consensus pattern (78 bp):
AGCCTGCAGGTCTTTAACCCGAATATTTTTCCAACACATAGCCTGCGGACCTCAAGTCCGGATAT
ATTTTCCAGCTAT
Found at i:81164930 original size:39 final size:39
Alignment explanation
Indices: 81164881--81165051 Score: 177
Period size: 39 Copynumber: 4.4 Consensus size: 39
81164871 ATACATTACT
*
81164881 AGCATA-AGCCTGCGGGTCTTTAACCCGAATATTTTTCC
1 AGCATATAGCCTGCGGGTCTTCAACCCGAATATTTTTCC
* * * * * * *
81164919 AGCACATAGCCTGC-GGACCTCAAGTCCGGATATATTTCT
1 AGCATATAGCCTGCGGGTCTTCAA-CCCGAATATTTTTCC
** * **
81164958 AGCATATAGTGTGCGGATC-TCATGTCCGAATATTTTTCC
1 AGCATATAGCCTGCGGGTCTTCA-ACCCGAATATTTTTCC
*
81164997 AGCATATAGCCTGCGGGTCTTTAACCCGAATATTTTTCC
1 AGCATATAGCCTGCGGGTCTTCAACCCGAATATTTTTCC
81165036 AGCATATAGCCTGCGG
1 AGCATATAGCCTGCGG
81165052 ACCTCATGTC
Statistics
Matches: 105, Mismatches: 23, Indels: 9
0.77 0.17 0.07
Matches are distributed among these distances:
38 11 0.10
39 90 0.86
40 4 0.04
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.30
Consensus pattern (39 bp):
AGCATATAGCCTGCGGGTCTTCAACCCGAATATTTTTCC
Found at i:81165040 original size:78 final size:78
Alignment explanation
Indices: 81164905--81165074 Score: 207
Period size: 78 Copynumber: 2.2 Consensus size: 78
81164895 GGTCTTTAAC
* * * **
81164905 CCGAATATTTTTCCAGCACATAGCCTGCGGACCTCAAGTCCGGATATATTTCTAGCATATAGTGT
1 CCGAATATTTTTCCAGCACATAGCCTGCGGACCTCAAGCCCGAATATATTTCCAGCATATAGCCT
*
81164970 GCGGATCTCATGT
66 GCGGACCTCATGT
* * * * *
81164983 CCGAATATTTTTCCAGCATATAGCCTGCGGGTCTTTAA-CCCGAATATTTTTCCAGCATATAGCC
1 CCGAATATTTTTCCAGCACATAGCCTGC-GGACCTCAAGCCCGAATATATTTCCAGCATATAGCC
81165047 TGCGGACCTCATGT
65 TGCGGACCTCATGT
*
81165061 CCGGATATATTTTC
1 CCGAATAT-TTTTC
81165075 AATCTCATAC
Statistics
Matches: 78, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
78 67 0.86
79 11 0.14
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (78 bp):
CCGAATATTTTTCCAGCACATAGCCTGCGGACCTCAAGCCCGAATATATTTCCAGCATATAGCCT
GCGGACCTCATGT
Found at i:81166047 original size:45 final size:45
Alignment explanation
Indices: 81165983--81166071 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
81165973 AAATAAGTTT
* *
81165983 AATATAAAGTTTACCACTTAAATTCTGCCAAATCAAATCATATGC
1 AATATAAAGTTTACCACTTAAATTCAGACAAATCAAATCATATGC
81166028 AATATAAAGTTTACCACTTAAATTCAGACAAATCAAATCATATG
1 AATATAAAGTTTACCACTTAAATTCAGACAAATCAAATCATATG
81166072 TGTACATGAT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.45, C:0.18, G:0.07, T:0.30
Consensus pattern (45 bp):
AATATAAAGTTTACCACTTAAATTCAGACAAATCAAATCATATGC
Found at i:81166693 original size:224 final size:224
Alignment explanation
Indices: 81166303--81166749 Score: 858
Period size: 224 Copynumber: 2.0 Consensus size: 224
81166293 TAATTTATAA
81166303 TACATGCAATAAAATCAATCCAAATTCCCCTTTCCAAAACATATATATTTTATACTCATGCAAAA
1 TACATGCAATAAAATCAATCCAAATTCCCCTTTCCAAAACATATATATTTTATACTCATGCAAAA
81166368 AAAAACCATGATCGAATCACTTATAGATACTACCTAAGCCATCAACTATTTTAACACACAAACAT
66 AAAAACCATGATCGAATCACTTATAGATACTACCTAAGCCATCAACTATTTTAACACACAAACAT
*
81166433 TACTCAAAGATTACACTAGTTCACATTCGGCAAGTTTCACAACTACACAAGCCGAATTTTTTTTT
131 TACTCAAAGATTACACTAGTTCACATTCGGCAAGTTTCACAACTACACAAGCCAAATTTTTTTTT
*
81166498 CATCTCAACTACTAATATGAATATTAAAG
196 CATCTCAACTACTAATATGAACATTAAAG
81166527 TACATGCAATAAAATCAATCCAAATTCCCCTTTCCAAAACATATATATTTTATACTCATGCAAAA
1 TACATGCAATAAAATCAATCCAAATTCCCCTTTCCAAAACATATATATTTTATACTCATGCAAAA
81166592 AAAAACCATGATCGAATCACTTATAGATACTACCTAAGCCATCAACTATTTTAACACACAAACAT
66 AAAAACCATGATCGAATCACTTATAGATACTACCTAAGCCATCAACTATTTTAACACACAAACAT
81166657 TACTCAAAGATTACACTAGTTCACATTCGGCAAGTTTCACAACTACACAAGCCAAATTTTTTTTT
131 TACTCAAAGATTACACTAGTTCACATTCGGCAAGTTTCACAACTACACAAGCCAAATTTTTTTTT
* *
81166722 CATCTGAACTAGTAATATGAACATTAAA
196 CATCTCAACTACTAATATGAACATTAAA
81166750 CTATATTAAA
Statistics
Matches: 219, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
224 219 1.00
ACGTcount: A:0.41, C:0.23, G:0.07, T:0.30
Consensus pattern (224 bp):
TACATGCAATAAAATCAATCCAAATTCCCCTTTCCAAAACATATATATTTTATACTCATGCAAAA
AAAAACCATGATCGAATCACTTATAGATACTACCTAAGCCATCAACTATTTTAACACACAAACAT
TACTCAAAGATTACACTAGTTCACATTCGGCAAGTTTCACAACTACACAAGCCAAATTTTTTTTT
CATCTCAACTACTAATATGAACATTAAAG
Found at i:81173957 original size:46 final size:46
Alignment explanation
Indices: 81173887--81174157 Score: 207
Period size: 46 Copynumber: 5.8 Consensus size: 46
81173877 TGTAACCCAC
* * *
81173887 CCATAAGCGAACTCGGAC-CAAACTCAACGAGCTCGGGTGTTTGCAT
1 CCATAAGTGAACTCGGACTC-AACTCAACGAGTTCGGATGTTTGCAT
* *
81173933 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG--T--TTGCAT
* * * * * * * *
81173983 --TTCA-CGAACTCGAACTGAACTTAACGAGTTTGAATGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTTGCAT
* *
81174026 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG--T--TTGC-AT
* * * * *
81174077 TCA-CA---AACTCGGACTCAACGCAACGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTTGCAT
*
81174119 CCATAAGTGAACTCGGACTCAAATCAACGAGTTCGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
81174158 CCCAAATATC
Statistics
Matches: 171, Mismatches: 37, Indels: 34
0.71 0.15 0.14
Matches are distributed among these distances:
42 3 0.02
43 8 0.05
45 4 0.02
46 86 0.50
47 54 0.32
48 4 0.02
50 9 0.05
51 3 0.02
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTTGCAT
Found at i:81174053 original size:93 final size:93
Alignment explanation
Indices: 81173924--81174159 Score: 364
Period size: 93 Copynumber: 2.5 Consensus size: 93
81173914 CGAGCTCGGG
* *
81173924 TGTTTGCATCCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTTACATTTCACG
1 TGTTTGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACA
* ** *
81173989 AACTCGAACTGAACTTAACGAGTTTGAA
66 AACTCGAACTCAACGCAACGAGTTCGAA
*
81174017 TGTTTGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACGTTTCACA
1 TGTTTGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACA
* *
81174082 AACTCGGACTCAACGCAACGAGTTCGGA
66 AACTCGAACTCAACGCAACGAGTTCGAA
* * *
81174110 CGTTCGCATCCATAAGTGAACTCGGACTCAAATCAACGAGTTCGGATGCC
1 TGTTTGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC
81174160 CAAATATCCA
Statistics
Matches: 131, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 131 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (93 bp):
TGTTTGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACA
AACTCGAACTCAACGCAACGAGTTCGAA
Found at i:81174089 original size:47 final size:46
Alignment explanation
Indices: 81173942--81174109 Score: 146
Period size: 47 Copynumber: 3.6 Consensus size: 46
81173932 TCCATAAGTG
* *
81173942 AACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTTACATTTCACG
1 AACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTAC-TTTCACA
* * * * * * * * *
81173989 AACTCGAACTGAACTTAACGAGTTTGAATG--T--TTGCATCCATAA
1 AACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACTTTCA-CA
81174032 GTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACGTTTCACA
1 ---AACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTAC-TTTCACA
*
81174082 AACTCGGACTCAACGCAACGAGTTCGGA
1 AACTCGGACTCAACTCAACGAGTTCGGA
81174110 CGTTCGCATC
Statistics
Matches: 91, Mismatches: 21, Indels: 18
0.70 0.16 0.14
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
45 1 0.01
46 25 0.27
47 51 0.56
48 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (46 bp):
AACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACTTTCACA
Found at i:81176935 original size:15 final size:15
Alignment explanation
Indices: 81176897--81176956 Score: 66
Period size: 15 Copynumber: 4.0 Consensus size: 15
81176887 AAGAAAACCG
*
81176897 AATAAAGAAATCCAA
1 AATAAAGAAACCCAA
* **
81176912 GATTGAGAAACCCAA
1 AATAAAGAAACCCAA
* *
81176927 AATAAAGAAATCCAG
1 AATAAAGAAACCCAA
81176942 AATAAAGAAACCCAA
1 AATAAAGAAACCCAA
81176957 GATACGATAC
Statistics
Matches: 34, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.60, C:0.17, G:0.12, T:0.12
Consensus pattern (15 bp):
AATAAAGAAACCCAA
Found at i:81176951 original size:30 final size:30
Alignment explanation
Indices: 81176897--81176956 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
81176887 AAGAAAACCG
**
81176897 AATAAAGAAATCCAAGATTGAGAAACCCAA
1 AATAAAGAAATCCAAGATAAAGAAACCCAA
81176927 AATAAAGAAATCC-AGAATAAAGAAACCCAA
1 AATAAAGAAATCCAAG-ATAAAGAAACCCAA
81176957 GATACGATAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 2 0.07
30 25 0.93
ACGTcount: A:0.60, C:0.17, G:0.12, T:0.12
Consensus pattern (30 bp):
AATAAAGAAATCCAAGATAAAGAAACCCAA
Found at i:81179977 original size:93 final size:93
Alignment explanation
Indices: 81179867--81180039 Score: 274
Period size: 93 Copynumber: 1.9 Consensus size: 93
81179857 CGCACATAAG
** * *
81179867 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGAACTCAAATCA
1 CGAACTCAAACTCAACTCAACGAGCTCAGACGTTCGCATCCATAAGTGAACTCGAACTCAAATCA
81179932 ACGAGTTCAGATGCCTAGTTACATTTCA
66 ACGAGTTCAGATGCCTAGTTACATTTCA
* * *
81179960 CGAACTCAAACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAAACTCAACTCAACGAGCTCAGACGTTCGCATCCATAAGTGAACTCGAACTCAAATCA
*
81180025 ACGAGTTCGGATGCC
66 ACGAGTTCAGATGCC
81180040 CAAATATCGG
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (93 bp):
CGAACTCAAACTCAACTCAACGAGCTCAGACGTTCGCATCCATAAGTGAACTCGAACTCAAATCA
ACGAGTTCAGATGCCTAGTTACATTTCA
Found at i:81180022 original size:46 final size:46
Alignment explanation
Indices: 81179861--81180032 Score: 168
Period size: 46 Copynumber: 3.7 Consensus size: 46
81179851 GTAACCCGCA
* * * *
81179861 CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATC
1 CATAAGCGAACTCGAACTCAACTCAACGAGTTCAGACGTTCGCATC
* * * * * * *
81179907 CATAAGTGAACTCGAACTCAAATCAACGAGTTCAGATGCCTAG-TTA
1 CATAAGCGAACTCGAACTCAACTCAACGAGTTCAGACG-TTCGCATC
* *
81179953 CATTTCA-CGAACTCAAACTCAACTCAACGAGTTCAGACGTTCGCATC
1 CA--TAAGCGAACTCGAACTCAACTCAACGAGTTCAGACGTTCGCATC
* *
81180000 CATAAGTGAACTCGGACTCAACTCAACGAGTTC
1 CATAAGCGAACTCGAACTCAACTCAACGAGTTC
81180033 GGATGCCCAA
Statistics
Matches: 97, Mismatches: 24, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
45 2 0.02
46 60 0.62
47 33 0.34
48 2 0.02
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.22
Consensus pattern (46 bp):
CATAAGCGAACTCGAACTCAACTCAACGAGTTCAGACGTTCGCATC
Found at i:81185412 original size:34 final size:34
Alignment explanation
Indices: 81185333--81185397 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
81185323 TTGTTTGCAT
*
81185333 ACTG-TACTAAAATGGGCTAAGGCCCAGACTGCC
1 ACTGATACTGAAATGGGCTAAGGCCCAGACTGCC
**
81185366 ACTGATACTGAAATGGGCTCTGGCCCAGACTG
1 ACTGATACTGAAATGGGCTAAGGCCCAGACTG
81185398 TTTCTGCTAC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 4 0.14
34 24 0.86
ACGTcount: A:0.28, C:0.26, G:0.26, T:0.20
Consensus pattern (34 bp):
ACTGATACTGAAATGGGCTAAGGCCCAGACTGCC
Found at i:81189770 original size:29 final size:28
Alignment explanation
Indices: 81189686--81189798 Score: 118
Period size: 29 Copynumber: 4.0 Consensus size: 28
81189676 CCTGTATCTA
* * *
81189686 GCCCATTAAGCCCAATCATATTCATATG
1 GCCCATTAGGCCCAATCACATTTATATG
* * * **
81189714 GCCTAGTAGGCCCAAATCACCTGAATATG
1 GCCCATTAGGCCC-AATCACATTTATATG
81189743 GCCCATTAGGCCCAAATCACATTTATATG
1 GCCCATTAGGCCC-AATCACATTTATATG
* *
81189772 GCCCGTTAGGCCCAGTCACATTTATAT
1 GCCCATTAGGCCCAATCACATTTATAT
81189799 TCATGCTCAC
Statistics
Matches: 70, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
28 23 0.33
29 47 0.67
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (28 bp):
GCCCATTAGGCCCAATCACATTTATATG
Found at i:81190671 original size:19 final size:21
Alignment explanation
Indices: 81190630--81190677 Score: 64
Period size: 19 Copynumber: 2.3 Consensus size: 21
81190620 TAAGTGAAAT
81190630 AAAGAAAATTGTGTAGAGAAGA
1 AAAG-AAATTGTGTAGAGAAGA
*
81190652 ATAGAAATTG-GTAG-GAAGA
1 AAAGAAATTGTGTAGAGAAGA
81190671 AAAGAAA
1 AAAGAAA
81190678 GAAAAGCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 11 0.46
20 4 0.17
21 6 0.25
22 3 0.12
ACGTcount: A:0.56, C:0.00, G:0.27, T:0.17
Consensus pattern (21 bp):
AAAGAAATTGTGTAGAGAAGA
Found at i:81194289 original size:29 final size:28
Alignment explanation
Indices: 81194203--81194317 Score: 113
Period size: 29 Copynumber: 4.0 Consensus size: 28
81194193 TACCTGTATC
* *
81194203 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
* * * * **
81194231 TAGCCTATTAGACCCAAATCACCTGAATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
*
81194260 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
* *
81194289 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
81194317 T
1 T
81194318 TCATGCTCAC
Statistics
Matches: 69, Mismatches: 17, Indels: 2
0.78 0.19 0.02
Matches are distributed among these distances:
28 23 0.33
29 46 0.67
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:81199832 original size:222 final size:222
Alignment explanation
Indices: 81199446--81199887 Score: 787
Period size: 222 Copynumber: 2.0 Consensus size: 222
81199436 TAGACGATGA
*
81199446 GAGGGTGGTGGCTGAGTGTGAAGGTCCTTGTGACGGGGAGGGACATCATCAGTAATGTCCTCTAG
1 GAGGGTGGTGGCTGAGTGTGAAGGTCCTCGTGACGGGGAGGGACATCATCAGTAATGTCCTCTAG
81199511 GTCCTCCTTTTCGGTGGACTGGATGAGGCGGTACTGAGGAGGGTAGGTGCCACGTCGTTTCTCGA
66 GTCCTCCTTTTCGGTGGACTGGATGAGGCGGTACTGAGGAGGGTAGGTGCCACGTCGTTTCTCGA
* *
81199576 TCATTCTCATATGTGGCATGCTCAAGATGCCCTGTGGGGACATCTAGCCGATGACAGTGGGGGAG
131 TCATCCTCATATGTAGCATGCTCAAGATGCCCTGTGGGGACATCTAGCCGATGACAGTGGGGGAG
*
81199641 GACGATTGTGCCACTATGTTGAGGAGC
196 GACGATTGTGCCACTACGTTGAGGAGC
* * *
81199668 GAGGGTGGTGGCTGAGTCG-GAGGGTCCTCGTGATGGGGAGGGACATCATCAGTAATGTCCTCTG
1 GAGGGTGGTGGCTGAGT-GTGAAGGTCCTCGTGACGGGGAGGGACATCATCAGTAATGTCCTCTA
* *
81199732 GGTCCTCCTTTTCTGTGGACTGGATGAGGTGGTACTGAGGAGGGTAGGTGCCACGTCGTTTCTCG
65 GGTCCTCCTTTTCGGTGGACTGGATGAGGCGGTACTGAGGAGGGTAGGTGCCACGTCGTTTCTCG
81199797 ATCATCCTCATATGTAGCATGCTCAAGATGCCCTGTGGGGACATCTAGCCGATGACAGTGGGGGA
130 ATCATCCTCATATGTAGCATGCTCAAGATGCCCTGTGGGGACATCTAGCCGATGACAGTGGGGGA
81199862 GGACGATTGTGCCACTACGTTGAGGA
195 GGACGATTGTGCCACTACGTTGAGGA
81199888 CCCCAAAGTG
Statistics
Matches: 210, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
222 209 1.00
223 1 0.00
ACGTcount: A:0.19, C:0.20, G:0.36, T:0.26
Consensus pattern (222 bp):
GAGGGTGGTGGCTGAGTGTGAAGGTCCTCGTGACGGGGAGGGACATCATCAGTAATGTCCTCTAG
GTCCTCCTTTTCGGTGGACTGGATGAGGCGGTACTGAGGAGGGTAGGTGCCACGTCGTTTCTCGA
TCATCCTCATATGTAGCATGCTCAAGATGCCCTGTGGGGACATCTAGCCGATGACAGTGGGGGAG
GACGATTGTGCCACTACGTTGAGGAGC
Found at i:81210877 original size:56 final size:56
Alignment explanation
Indices: 81210816--81210949 Score: 205
Period size: 56 Copynumber: 2.4 Consensus size: 56
81210806 CATGGCATAT
* * * *
81210816 ATATATGTGTGCAAGTAAGACCACGTTTAATAGGTTGACATCGATATGTGACTTTG
1 ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGACATCGATATATGACTTCG
* *
81210872 ATATATGTGTCCGAGTAAGACCACGTTTAATACGTTGGCATCGATATATGACTTCG
1 ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGACATCGATATATGACTTCG
*
81210928 ATACATGTGTGCGAGTAAGACC
1 ATATATGTGTGCGAGTAAGACC
81210950 CAGTTTAGGA
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 70 1.00
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (56 bp):
ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGACATCGATATATGACTTCG
Found at i:81210956 original size:56 final size:56
Alignment explanation
Indices: 81210820--81210974 Score: 197
Period size: 56 Copynumber: 2.8 Consensus size: 56
81210810 GCATATATAT
* * * * * *
81210820 ATGTGTGCAAGTAAGACCACGTTTAATAGGTTGACATCGATATGTGACTTTGATAT
1 ATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATATGACTTCGATAC
*
81210876 ATGTGTCCGAGTAAGACCACGTTTAATACGTTGGCATCGATATATGACTTCGATAC
1 ATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATATGACTTCGATAC
**
81210932 ATGTGTGCGAGTAAGACC-CAGTTTAGGACAG-TGGCATCGATAT
1 ATGTGTGCGAGTAAGACCAC-GTTTAATAC-GTTGGCATCGATAT
81210975 GTGATTACAT
Statistics
Matches: 87, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
55 1 0.01
56 85 0.98
57 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (56 bp):
ATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATATGACTTCGATAC
Found at i:81216673 original size:24 final size:25
Alignment explanation
Indices: 81216644--81216699 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
81216634 TAATTTATAG
* *
81216644 AAATTAA-TAGTTCAATAAACTGAA
1 AAATTAACTAATTCAATAAAATGAA
* *
81216668 AAATTAACTAATTGAATAAAATTAA
1 AAATTAACTAATTCAATAAAATGAA
81216693 AAATTAA
1 AAATTAA
81216700 GAGAAACTAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
24 7 0.26
25 20 0.74
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.30
Consensus pattern (25 bp):
AAATTAACTAATTCAATAAAATGAA
Found at i:81224800 original size:49 final size:49
Alignment explanation
Indices: 81224728--81224825 Score: 178
Period size: 49 Copynumber: 2.0 Consensus size: 49
81224718 TATTTAATCA
* *
81224728 GCTAAAATTCTGATTTGGGTCAGCATATGGATGGTTTTGGGCTGCCCAT
1 GCTAAAATTATGATTTGGGTCAGCATATGGATGGTTCTGGGCTGCCCAT
81224777 GCTAAAATTATGATTTGGGTCAGCATATGGATGGTTCTGGGCTGCCCAT
1 GCTAAAATTATGATTTGGGTCAGCATATGGATGGTTCTGGGCTGCCCAT
81224826 TAGTGGCTGG
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.21, C:0.16, G:0.29, T:0.34
Consensus pattern (49 bp):
GCTAAAATTATGATTTGGGTCAGCATATGGATGGTTCTGGGCTGCCCAT
Found at i:81227751 original size:20 final size:20
Alignment explanation
Indices: 81227728--81227918 Score: 197
Period size: 20 Copynumber: 9.7 Consensus size: 20
81227718 AGACCTACTA
* *
81227728 ATGGCTTTGTGCCGTTACTG
1 ATGGCTTTGTGCCGCTATTG
* *
81227748 ATGGCTTTATGCCACTATTG
1 ATGGCTTTGTGCCGCTATTG
* *
81227768 ATGACTTTGTGTCGCTATTG
1 ATGGCTTTGTGCCGCTATTG
* *
81227788 ATAGCTTTGTGCCACTATTG
1 ATGGCTTTGTGCCGCTATTG
* *
81227808 ACGGCTTTGTGCCACTATTG
1 ATGGCTTTGTGCCGCTATTG
** *
81227828 ATGGCTTTGTGCTACTACTG
1 ATGGCTTTGTGCCGCTATTG
*
81227848 ATGG-TTTGCGCCGCTATTG
1 ATGGCTTTGTGCCGCTATTG
*
81227867 ATGGCTTTGTACCGCTATT-
1 ATGGCTTTGTGCCGCTATTG
* * *
81227886 ATGGCTTCGTGCCGCTACTC
1 ATGGCTTTGTGCCGCTATTG
*
81227906 ATGGATTTGTGCC
1 ATGGCTTTGTGCC
81227919 ATATGCTATT
Statistics
Matches: 141, Mismatches: 28, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
19 31 0.22
20 110 0.78
ACGTcount: A:0.15, C:0.21, G:0.25, T:0.39
Consensus pattern (20 bp):
ATGGCTTTGTGCCGCTATTG
Found at i:81227983 original size:26 final size:27
Alignment explanation
Indices: 81227925--81228003 Score: 74
Period size: 26 Copynumber: 3.0 Consensus size: 27
81227915 TGCCATATGC
* * *
81227925 TATTACTGGCAACTTTGCTGTGTTACT
1 TATTACTGGCAGCTTTGCTGCGATACT
*
81227952 GA-TACTGGCAGCTTTGCTGCGATA-T
1 TATTACTGGCAGCTTTGCTGCGATACT
* *
81227977 TATTACTGGTAGCTATGCTAG-GATACT
1 TATTACTGGCAGCTTTGCT-GCGATACT
81228004 AGTGTGTTGG
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
25 2 0.05
26 37 0.88
27 3 0.07
ACGTcount: A:0.22, C:0.18, G:0.23, T:0.38
Consensus pattern (27 bp):
TATTACTGGCAGCTTTGCTGCGATACT
Found at i:81228161 original size:33 final size:34
Alignment explanation
Indices: 81228099--81228171 Score: 96
Period size: 33 Copynumber: 2.2 Consensus size: 34
81228089 GCATGGTTGG
* * *
81228099 ACTG-TATTGTTTCTGTATTTGGCTAAGGCCCAC
1 ACTGTTATTGTTTCTGTAATGGGCTAAGGCCCAA
*
81228132 ACTGTTATTGTTTC-GTAATGGGCTCAGGCCCAA
1 ACTGTTATTGTTTCTGTAATGGGCTAAGGCCCAA
81228165 ACTGTTA
1 ACTGTTA
81228172 CTGATCTAGG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
33 26 0.74
34 9 0.26
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.37
Consensus pattern (34 bp):
ACTGTTATTGTTTCTGTAATGGGCTAAGGCCCAA
Found at i:81231254 original size:120 final size:120
Alignment explanation
Indices: 81231041--81231281 Score: 432
Period size: 120 Copynumber: 2.0 Consensus size: 120
81231031 TTCTGTACTG
81231041 TTCCTATAATTGTTTCGTTACTTCCATATGAAAGTAGATTCATCAAGGTTCGATTACATAATTTA
1 TTCCTATAATTGTTTCGTTACTTCCATATGAAAGTAGATTCATCAAGGTTCGATTACATAATTTA
81231106 TTCACTATTTAATTCCACTCCTACGAATTCT-TGTGATTTTTCCAA-TCCACACCAC
66 TTCACTATTTAATTCCACTCCTACGAATT-TATGTGATTTTT-CAATTCCACACCAC
*
81231161 TTCCTATAATTGTTTCGTTACTTCCATATGAAAGTAGATTCATCAAGGTTTGATTACATAATTTA
1 TTCCTATAATTGTTTCGTTACTTCCATATGAAAGTAGATTCATCAAGGTTCGATTACATAATTTA
*
81231226 TTCACTATTTAATTCCACTCCTACGAATTTATGTGATTTTTCAATTCTACACCAC
66 TTCACTATTTAATTCCACTCCTACGAATTTATGTGATTTTTCAATTCCACACCAC
81231281 T
1 T
81231282 GTTGCTGTCA
Statistics
Matches: 117, Mismatches: 2, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
119 4 0.03
120 113 0.97
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.41
Consensus pattern (120 bp):
TTCCTATAATTGTTTCGTTACTTCCATATGAAAGTAGATTCATCAAGGTTCGATTACATAATTTA
TTCACTATTTAATTCCACTCCTACGAATTTATGTGATTTTTCAATTCCACACCAC
Found at i:81232090 original size:40 final size:40
Alignment explanation
Indices: 81232046--81233033 Score: 1823
Period size: 40 Copynumber: 24.7 Consensus size: 40
81232036 GCAAACACAT
* * * *
81232046 TTGCCTTCGGGTCTTAGCCCGAACATATCAACTCGCATAA
1 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
*
81232086 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
81232126 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
**
81232166 TTGCCTTCGGGTCATAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
81232206 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
81232246 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
81232286 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
81232326 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
81232366 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
81232406 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
81232446 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
81232486 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
81232526 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
81232566 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
81232606 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
81232646 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
81232686 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
81232726 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
81232766 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
81232806 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
81232846 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
** *
81232886 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
* *
81232926 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
** *
81232966 TTGCCTTCGGGTCCTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
**
81233006 TTGCCTTCGGGTCATAGCCCGGATATAT
1 TTGCCTTCGGGTTTTAGCCCGGATATAT
81233034 TCCAATGCTC
Statistics
Matches: 934, Mismatches: 14, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 934 1.00
ACGTcount: A:0.21, C:0.26, G:0.20, T:0.34
Consensus pattern (40 bp):
TTGCCTTCGGGTTTTAGCCCGGATATATCATCTCGCATAA
Found at i:81238402 original size:43 final size:43
Alignment explanation
Indices: 81238335--81238417 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
81238325 TTGAGCAATG
* **
81238335 AATTCCAGCACAACAAAAGTATAGCATTCATATAGCTAAAAGA
1 AATTCCAGCACAACAAAAGCATAGCACACATATAGCTAAAAGA
* * *
81238378 AATTCCAGCATAACGAAAGCATAGCACACATTTAGCTAAA
1 AATTCCAGCACAACAAAAGCATAGCACACATATAGCTAAA
81238418 CGGAATATTT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.47, C:0.20, G:0.12, T:0.20
Consensus pattern (43 bp):
AATTCCAGCACAACAAAAGCATAGCACACATATAGCTAAAAGA
Found at i:81238577 original size:20 final size:20
Alignment explanation
Indices: 81238552--81238591 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
81238542 ATTTATTTGT
* *
81238552 AAGGGCTCGATTAAATTCAA
1 AAGGGCTCAACTAAATTCAA
81238572 AAGGGCTCAACTAAATTCAA
1 AAGGGCTCAACTAAATTCAA
81238592 GCACATACGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.42, C:0.17, G:0.17, T:0.23
Consensus pattern (20 bp):
AAGGGCTCAACTAAATTCAA
Found at i:81238926 original size:40 final size:40
Alignment explanation
Indices: 81238787--81238966 Score: 197
Period size: 40 Copynumber: 4.5 Consensus size: 40
81238777 GATTTAGTAA
* *
81238787 CCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACGAATG
1 CCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATG
* * *
81238827 CCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGG
1 CCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATG
81238867 CCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATG
** * * *
81238907 CCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA-G
1 CCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACAAATG
*
81238947 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
81238967 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 14, Indels: 11
0.83 0.10 0.08
Matches are distributed among these distances:
39 8 0.07
40 101 0.84
41 11 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATG
Found at i:81238926 original size:80 final size:80
Alignment explanation
Indices: 81238787--81238966 Score: 226
Period size: 80 Copynumber: 2.2 Consensus size: 80
81238777 GATTTAGTAA
* *
81238787 CCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGACTTAACCCGGA-ATTA
1 CCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGGACTTAACCCGGATA-TA
*
81238851 GT-A-TCTCGCACAAAGG
65 GTCACT-TAGCACAAA-G
**
81238867 CCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATAT
1 CCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATAT
81238930 AGTCACTTAGCACAAAG
64 AGTCACTTAGCACAAAG
*
81238947 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
81238967 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 6, Indels: 10
0.85 0.06 0.10
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAG
TCACTTAGCACAAAG
Found at i:81241835 original size:42 final size:43
Alignment explanation
Indices: 81241751--81241889 Score: 181
Period size: 42 Copynumber: 3.2 Consensus size: 43
81241741 ATCTCAGTCG
* * *
81241751 TGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACA
1 TGGTCTTACATGAAATCAAATATCGATGCCAATGTCCTAGACA
* * *
81241794 CGGTCTTACAAGAAATCATATA-CGATGCCAATGTCCTAGACA
1 TGGTCTTACATGAAATCAAATATCGATGCCAATGTCCTAGACA
* * *
81241836 TGGTCTTACATGTAAATCAAAAATCGATGCCAACGTCCTAGACG
1 TGGTCTTACATG-AAATCAAATATCGATGCCAATGTCCTAGACA
81241880 TGGTCTTACA
1 TGGTCTTACA
81241890 CGATAACACA
Statistics
Matches: 82, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
42 28 0.34
43 26 0.32
44 28 0.34
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (43 bp):
TGGTCTTACATGAAATCAAATATCGATGCCAATGTCCTAGACA
Found at i:81241874 original size:44 final size:44
Alignment explanation
Indices: 81241751--81241889 Score: 178
Period size: 44 Copynumber: 3.2 Consensus size: 44
81241741 ATCTCAGTCG
*
81241751 TGGTCTTACATGT-AATCAAATATCGATGCC-ACTGTCCCAGACA
1 TGGTCTTACATGTAAATCAAATATCGATGCCAAC-GTCCTAGACA
* * * *
81241794 CGGTCTTACAAG-AAATCATATA-CGATGCCAATGTCCTAGACA
1 TGGTCTTACATGTAAATCAAATATCGATGCCAACGTCCTAGACA
* *
81241836 TGGTCTTACATGTAAATCAAAAATCGATGCCAACGTCCTAGACG
1 TGGTCTTACATGTAAATCAAATATCGATGCCAACGTCCTAGACA
81241880 TGGTCTTACA
1 TGGTCTTACA
81241890 CGATAACACA
Statistics
Matches: 81, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
42 26 0.32
43 27 0.33
44 28 0.35
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (44 bp):
TGGTCTTACATGTAAATCAAATATCGATGCCAACGTCCTAGACA
Found at i:81245472 original size:45 final size:44
Alignment explanation
Indices: 81245367--81245588 Score: 204
Period size: 45 Copynumber: 5.0 Consensus size: 44
81245357 AAGTTATCTC
* ** *
81245367 ATATCGATGCC-ACTATCCCAGACAG-GGTCTTACATAAATCA-A-
1 ATATCGATGCCAAC-GTCCCAGAC-GTGGTCTTACCGAAAACACAT
* * * * *
81245409 ATA-CGATGCCGATGTCCCAGACATGGTCTTACTC-ATAACCATAT
1 ATATCGATGCCAACGTCCCAGACGTGGTCTTAC-CGA-AAACACAT
81245453 ATATCGATGCCAACGTCCCAGACGTGGTCTTACGCGAAAACACAT
1 ATATCGATGCCAACGTCCCAGACGTGGTCTTAC-CGAAAACACAT
* * *
81245498 ATATCAATGCCAACGTACCAGACGCGGTCTTACACGAAAACACAT
1 ATATCGATGCCAACGTCCCAGACGTGGTCTTAC-CGAAAACACAT
* * *
81245543 ATATCGATGCCAATGTTCCAGACGTGCTCTTACACGAAAACACAT
1 ATATCGATGCCAACGTCCCAGACGTGGTCTTAC-CGAAAACACAT
81245588 A
1 A
81245589 GCATAATCCT
Statistics
Matches: 152, Mismatches: 20, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
41 24 0.16
42 8 0.05
43 1 0.01
44 3 0.02
45 115 0.76
46 1 0.01
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (44 bp):
ATATCGATGCCAACGTCCCAGACGTGGTCTTACCGAAAACACAT
Found at i:81246160 original size:15 final size:15
Alignment explanation
Indices: 81246137--81246167 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
81246127 TCAAAAATTC
81246137 CAATACAAAACATAT
1 CAATACAAAACATAT
*
81246152 CAATCCAAAACATAT
1 CAATACAAAACATAT
81246167 C
1 C
81246168 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:81246699 original size:14 final size:15
Alignment explanation
Indices: 81246682--81246710 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
81246672 GCACGAAAAT
81246682 TTCACACA-AATAAA
1 TTCACACATAATAAA
81246696 TTCACACATAATAAA
1 TTCACACATAATAAA
81246711 CATAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.55, C:0.21, G:0.00, T:0.24
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:81251509 original size:53 final size:53
Alignment explanation
Indices: 81251315--81251521 Score: 171
Period size: 53 Copynumber: 3.8 Consensus size: 53
81251305 ATTAGGGTTT
* * * ** * * *
81251315 AAGGATACCAAGTAATACCACGCCAAGGCATGGCATTGGTAAGTTTTACAAGGA
1 AAGGATACCATGTAAGACCATGCCAAAACATGGCAATGGTAAG-TTCACAAGGC
* * * * * * * *
81251369 AAGGAAATCATGTAAGACCATGTCAAAACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAAACATGGCAATGGT-AAGTTC-ACAAGGC
* * ** *
81251424 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAAACATGGCAATGGTAAGTTCACAAGGC
* * *
81251477 AAGGATACCACGTAAGACCATGTCAAAACATGGAAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAAACATGGCAATGGTAAGTT
81251522 TAAAAAGGAA
Statistics
Matches: 116, Mismatches: 35, Indels: 5
0.74 0.22 0.03
Matches are distributed among these distances:
53 43 0.37
54 35 0.30
55 38 0.33
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAAACATGGCAATGGTAAGTTCACAAGGC
Found at i:81258528 original size:53 final size:53
Alignment explanation
Indices: 81258349--81258556 Score: 184
Period size: 55 Copynumber: 3.8 Consensus size: 53
81258339 ATTAGGGTTT
* * * *
81258349 AAGGATACCAAGTATGACCATGCCAAGGCATGGCATTGGTAAG-TCATGCCAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCAT---AAGGC
* * * * * * * * *
81258404 AAGGAAATCATGCAAGACCATGTCAAGATATGGCATTGATAAACTATTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGT-TCATAAGGC
* * * *
81258459 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* * *
81258512 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTCAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
81258557 TAAAAAGGAA
Statistics
Matches: 120, Mismatches: 30, Indels: 8
0.76 0.19 0.05
Matches are distributed among these distances:
53 47 0.39
54 2 0.02
55 66 0.55
56 2 0.02
58 3 0.03
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:81260597 original size:43 final size:42
Alignment explanation
Indices: 81260536--81260619 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 42
81260526 ACAATGCTAA
* * *
81260536 TGTCCCAAACATGGTCTTACATGTAATCAAATATCGATGCCAC
1 TGTCCCAAACAAGGTCTTACACGAAATCAAATA-CGATGCCAC
*
81260579 TGTCCCAGACAAGGTCTTACACGAAATCAAATACGATGCCA
1 TGTCCCAAACAAGGTCTTACACGAAATCAAATACGATGCCA
81260620 ACGTCCTAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 8 0.22
43 29 0.78
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (42 bp):
TGTCCCAAACAAGGTCTTACACGAAATCAAATACGATGCCAC
Found at i:81263990 original size:28 final size:29
Alignment explanation
Indices: 81263935--81264061 Score: 159
Period size: 29 Copynumber: 4.3 Consensus size: 29
81263925 AAGTCTACAT
* * *
81263935 ACATGCATATGGCCTACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
81263963 TCATTCATATGGCCCATTA-GCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
81263991 ATATTCATATGGCTGCCCATTAGGCCCAAATC
1 ACATTCATAT-G--GCCCATTAGGCCCAAATC
*
81264023 ACATTCATACGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
81264052 ACATTCATAT
1 ACATTCATAT
81264062 ACATGCTTTC
Statistics
Matches: 85, Mismatches: 9, Indels: 9
0.83 0.09 0.09
Matches are distributed among these distances:
27 4 0.05
28 27 0.32
29 28 0.33
31 9 0.11
32 17 0.20
ACGTcount: A:0.30, C:0.31, G:0.13, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:81265777 original size:20 final size:21
Alignment explanation
Indices: 81265752--81265792 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
81265742 CATATCGATC
*
81265752 TTTAGCATA-CCCTAGGGAAA
1 TTTAGCATAGCCCGAGGGAAA
81265772 TTTAGCATAGCCCGAGGGAAA
1 TTTAGCATAGCCCGAGGGAAA
81265793 GATCGAGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (21 bp):
TTTAGCATAGCCCGAGGGAAA
Found at i:81294748 original size:39 final size:40
Alignment explanation
Indices: 81294593--81294814 Score: 249
Period size: 40 Copynumber: 5.6 Consensus size: 40
81294583 TCCTCGTTCG
** * *
81294593 AATGCCTTCGGGACAGAGCCCGG-TTATAGTAATTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACA
* * *
81294633 AATGCCTTCGGGACTTAACCCGGATTTAGTAAATCGCACA
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACA
* *
81294673 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACA
*
81294713 AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACA
* * *
81294752 AATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCACA
81294792 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
81294815 CAGCATTCAA
Statistics
Matches: 163, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
38 2 0.01
39 49 0.30
40 102 0.63
41 10 0.06
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACA
Found at i:81294775 original size:79 final size:81
Alignment explanation
Indices: 81294593--81294814 Score: 260
Period size: 79 Copynumber: 2.8 Consensus size: 81
81294583 TCCTCGTTCG
** * * * *
81294593 AATGCCTTCGGGACAGAGCCCGGTTA-TAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 AATGCCTTCGGGACTTAACCCGGATATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
81294657 TTTAGTAAATCGCACA
66 ATTAGTAAATCGCACA
81294673 AATGCCTTCGGGACTTAACCCGGAT-TTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGATATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
**
81294736 ATTAGTATCTCGCACA
66 ATTAGTAAATCGCACA
** * *
81294752 AATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 AATGCCTTCGGGA-CTTAACCCGGATATTAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
81294813 GA
64 GA
81294815 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
78 12 0.10
79 59 0.48
80 53 0.43
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAACCCGGATATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
ATTAGTAAATCGCACA
Found at i:81297718 original size:47 final size:44
Alignment explanation
Indices: 81297608--81297732 Score: 144
Period size: 47 Copynumber: 2.7 Consensus size: 44
81297598 TTATTTGTCT
* *
81297608 GCTAGTGTAAGACATGTCTGGGACATGCACCGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-C-CATTACGAGA
*
81297654 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTGAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCATT---ACGAGA
*
81297702 GCTAGAGTAAGACATGTCTGGGACATGCATC
1 GCTAGTGTAAGACATGTCTGGGACATGCATC
81297733 AGCTATGAGA
Statistics
Matches: 69, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
45 4 0.06
46 16 0.23
47 28 0.41
48 21 0.30
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.21
Consensus pattern (44 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATTACGAGA
Found at i:81298089 original size:161 final size:161
Alignment explanation
Indices: 81297824--81298145 Score: 644
Period size: 161 Copynumber: 2.0 Consensus size: 161
81297814 GGGACATGGC
81297824 ATCGGCATTTTACCCTATGTTTGAGGCTTAGTGAATATCCAATAGTATTCCAAATGGTTCAACGG
1 ATCGGCATTTTACCCTATGTTTGAGGCTTAGTGAATATCCAATAGTATTCCAAATGGTTCAACGG
81297889 TGAAAGTTACAATTTAGATTGAACGAGAAAAGCATAACCATTTTGTGAGTGGTACAGGTATCTAT
66 TGAAAGTTACAATTTAGATTGAACGAGAAAAGCATAACCATTTTGTGAGTGGTACAGGTATCTAT
81297954 TTGAATTGTATAAAATGTGAGCTCAATATAT
131 TTGAATTGTATAAAATGTGAGCTCAATATAT
81297985 ATCGGCATTTTACCCTATGTTTGAGGCTTAGTGAATATCCAATAGTATTCCAAATGGTTCAACGG
1 ATCGGCATTTTACCCTATGTTTGAGGCTTAGTGAATATCCAATAGTATTCCAAATGGTTCAACGG
81298050 TGAAAGTTACAATTTAGATTGAACGAGAAAAGCATAACCATTTTGTGAGTGGTACAGGTATCTAT
66 TGAAAGTTACAATTTAGATTGAACGAGAAAAGCATAACCATTTTGTGAGTGGTACAGGTATCTAT
81298115 TTGAATTGTATAAAATGTGAGCTCAATATAT
131 TTGAATTGTATAAAATGTGAGCTCAATATAT
81298146 GCTATGTGAA
Statistics
Matches: 161, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
161 161 1.00
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.34
Consensus pattern (161 bp):
ATCGGCATTTTACCCTATGTTTGAGGCTTAGTGAATATCCAATAGTATTCCAAATGGTTCAACGG
TGAAAGTTACAATTTAGATTGAACGAGAAAAGCATAACCATTTTGTGAGTGGTACAGGTATCTAT
TTGAATTGTATAAAATGTGAGCTCAATATAT
Found at i:81308741 original size:42 final size:42
Alignment explanation
Indices: 81308629--81308792 Score: 177
Period size: 42 Copynumber: 3.9 Consensus size: 42
81308619 TAAGATGCCA
* * ** *
81308629 ATGCCATATCCCAGATATGGTCTTACATGGGACCACATATCG
1 ATGCCATATCCCAGACATGGTCTTACACGAAATCACATATCG
* ** * *
81308671 ATGCCGATATCCTAG-CTATGGTCTTACACGATGTCTCATGTCG
1 ATGCC-ATATCCCAGAC-ATGGTCTTACACGAAATCACATATCG
* *
81308714 ATGCCATGTCCCAGACATGGTCTTACACGAAATCACATATTG
1 ATGCCATATCCCAGACATGGTCTTACACGAAATCACATATCG
* *
81308756 ATTCCATATCCCAGATATGGTCTTACACGAAATCACA
1 ATGCCATATCCCAGACATGGTCTTACACGAAATCACA
81308793 CATAACCCTA
Statistics
Matches: 100, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
42 67 0.67
43 33 0.33
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (42 bp):
ATGCCATATCCCAGACATGGTCTTACACGAAATCACATATCG
Found at i:81308753 original size:85 final size:84
Alignment explanation
Indices: 81308629--81308785 Score: 215
Period size: 85 Copynumber: 1.9 Consensus size: 84
81308619 TAAGATGCCA
* * ** * *
81308629 ATGCCATATCCCAGATATGGTCTTACATGGGACCACATATCGATGCCGATATCCTAGCTATGGTC
1 ATGCCATATCCCAGACATGGTCTTACACGAAACCACATATCGATGCC-ATATCCCAGATATGGTC
81308694 TTACACGATGTCTCATGTCG
65 TTACACGATGTCTCATGTCG
* * * *
81308714 ATGCCATGTCCCAGACATGGTCTTACACGAAATCACATATTGATTCCATATCCCAGATATGGTCT
1 ATGCCATATCCCAGACATGGTCTTACACGAAACCACATATCGATGCCATATCCCAGATATGGTCT
81308779 TACACGA
66 TACACGA
81308786 AATCACACAT
Statistics
Matches: 62, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
84 23 0.37
85 39 0.63
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (84 bp):
ATGCCATATCCCAGACATGGTCTTACACGAAACCACATATCGATGCCATATCCCAGATATGGTCT
TACACGATGTCTCATGTCG
Found at i:81314743 original size:40 final size:40
Alignment explanation
Indices: 81314699--81314782 Score: 123
Period size: 40 Copynumber: 2.1 Consensus size: 40
81314689 TGAGGAATTG
**
81314699 TATCCGGAATTAAAGACCCGTAGGCTATATGCTGGAATGT
1 TATCCGGAATTAAAGACCCACAGGCTATATGCTGGAATGT
** *
81314739 TATCCGGGCTTAAAGACCCACAGGCTATATGTTGGAATGT
1 TATCCGGAATTAAAGACCCACAGGCTATATGCTGGAATGT
81314779 TATC
1 TATC
81314783 TAGGCTTAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (40 bp):
TATCCGGAATTAAAGACCCACAGGCTATATGCTGGAATGT
Found at i:81314789 original size:40 final size:40
Alignment explanation
Indices: 81314708--81314844 Score: 152
Period size: 40 Copynumber: 3.5 Consensus size: 40
81314698 GTATCCGGAA
* *
81314708 TTAAAGACCCGTAGGCTATATGCTGGAATGTTATCCGGGC
1 TTAAAGACCCGCAGGCTATATGCTGGAATGTTATCCAGGC
* * *
81314748 TTAAAGACCCACAGGCTATATGTTGGAATGTTATCTAGGC
1 TTAAAGACCCGCAGGCTATATGCTGGAATGTTATCCAGGC
* * * * *
81314788 TTAAAGGCCCGCAGGCT-TCGTGCTAGAATGCTATCCGGGC
1 TTAAAGACCCGCAGGCTAT-ATGCTGGAATGTTATCCAGGC
*
81314828 -TAGAGACCCGCAGGCTA
1 TTAAAGACCCGCAGGCTA
81314845 CGAGCTGGTA
Statistics
Matches: 80, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
39 15 0.19
40 65 0.81
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TTAAAGACCCGCAGGCTATATGCTGGAATGTTATCCAGGC
Found at i:81317633 original size:18 final size:18
Alignment explanation
Indices: 81317607--81317649 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
81317597 TGATAGTAAA
*
81317607 GAATTAGAAAAGAAGCTT
1 GAATCAGAAAAGAAGCTT
81317625 GAATCAGAAAAGAAGCTT
1 GAATCAGAAAAGAAGCTT
81317643 GAATCAG
1 GAATCAG
81317650 TACCAGTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.49, C:0.09, G:0.23, T:0.19
Consensus pattern (18 bp):
GAATCAGAAAAGAAGCTT
Found at i:81319232 original size:47 final size:47
Alignment explanation
Indices: 81319163--81319335 Score: 337
Period size: 47 Copynumber: 3.7 Consensus size: 47
81319153 GCCCCTAAGT
81319163 GAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTTACATTTCAC
81319210 GAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTTACATTTCAC
81319257 GAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTTACATTTCAC
*
81319304 GAACTCGGACTCAACTCAACGAGTTCGGATGC
1 GAACTCGGACTCAACTCAACGAGTTTGGATGC
81319336 TCAACCATCC
Statistics
Matches: 125, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 125 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTTACATTTCAC
Found at i:81319789 original size:30 final size:30
Alignment explanation
Indices: 81319755--81319814 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
81319745 ATTTAATACG
81319755 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
81319785 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
81319815 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:81326486 original size:19 final size:20
Alignment explanation
Indices: 81326462--81326499 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
81326452 GGTACCACCA
81326462 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
81326481 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
81326500 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:81326843 original size:93 final size:93
Alignment explanation
Indices: 81326728--81326898 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
81326718 GCCCCTAAGT
*
81326728 GAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCATCCATAAATGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGA-CATTCGCATCCATAAATGAACTCGGACTCAACTCA
*
81326792 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACAAGTTCGGATGCCTAGTTACATCTCAC
* * *
81326821 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
81326886 CAAGTTCGGATGC
66 CAAGTTCGGATGC
81326899 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
93 70 0.97
94 2 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CAAGTTCGGATGCCTAGTTACATCTCAC
Found at i:81326894 original size:46 final size:47
Alignment explanation
Indices: 81326723--81326895 Score: 203
Period size: 46 Copynumber: 3.7 Consensus size: 47
81326713 AACCCGCCCC
* * *
81326723 TAAGTGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTTGCATCCA
* * *
81326769 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-G-C-ATTTGCATCCA
* *
81326817 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-CATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTTGCATCCA
*
81326862 TAAGTGAACTCGGACTCAACTCAACAAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
81326896 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 57 0.53
47 31 0.29
48 3 0.03
49 2 0.02
50 4 0.04
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.22
Consensus pattern (47 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTTGCATCCA
Found at i:81330636 original size:20 final size:19
Alignment explanation
Indices: 81330611--81330655 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
81330601 CATTATTTTG
*
81330611 AAATAAAAAAATAATTAGTA
1 AAATAAAAAAATAATGA-TA
* *
81330631 AAATAAGAAAATGATGATA
1 AAATAAAAAAATAATGATA
81330650 AAATAA
1 AAATAA
81330656 TGGGTGTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.69, C:0.00, G:0.09, T:0.22
Consensus pattern (19 bp):
AAATAAAAAAATAATGATA
Found at i:81332232 original size:40 final size:40
Alignment explanation
Indices: 81332174--81332272 Score: 112
Period size: 40 Copynumber: 2.5 Consensus size: 40
81332164 ATTGTATCTA
* * *
81332174 GGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATGTTATCCG
1 GGCTTAAAGACCCACAGGCT-TCATGCTAGAATGCTATCCG
* *
81332214 GGCTTAAAGACCTACAGGCTTCGTGCTAGAATGCTATCCG
1 GGCTTAAAGACCCACAGGCTTCATGCTAGAATGCTATCCG
* *
81332254 GGC-TAGAGACCCGCAGGCT
1 GGCTTAAAGACCCACAGGCT
81332273 ACGAGCTGGT
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
39 14 0.28
40 36 0.72
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
GGCTTAAAGACCCACAGGCTTCATGCTAGAATGCTATCCG
Found at i:81338802 original size:164 final size:165
Alignment explanation
Indices: 81338610--81338939 Score: 565
Period size: 164 Copynumber: 2.0 Consensus size: 165
81338600 GGAATGTCAT
*
81338610 AAGTGAACAGTTTGAGTCATTTTTTAGAATTTTGGACTTAATCAGATAAAAATATGATGAAGATA
1 AAGTGAACAATTTGAGTCATTTTTTAGAATTTTGGA-TTAATCAGATAAAAATATGATGAAGATA
* * *
81338675 -TTTTTTCATTGGCACTTATGGCTATTAATGTATTAGTGTTTATAAGCATGTGTGGTGATGGGAT
65 TTTTTTTCATTAGCACTTATGGCTATTAATGTATTAGTGTTTATAAGCATGTGTGGTGATAGGAG
* *
81338739 GAAATTTTTATTTTTAAAACCAATTTT-ATATTGAA
130 GAAAATTTGATTTTTAAAACCAATTTTGATATTGAA
*
81338774 AAGTGAACAATTTGAGTCATTTTTTAGAATTTTGGATTAATCAGATAAAAATATGATGAGGATAT
1 AAGTGAACAATTTGAGTCATTTTTTAGAATTTTGGATTAATCAGATAAAAATATGATGAAGATAT
*
81338839 TTTTTTCATTAGCACTTATGGCTGTTAATGTATTAGTGTTTATAAGCATGTGTGGTGATAGGAGG
66 TTTTTTCATTAGCACTTATGGCTATTAATGTATTAGTGTTTATAAGCATGTGTGGTGATAGGAGG
81338904 AAAATTTGATTTTTAAAACCAATTTTGATATTGAA
131 AAAATTTGATTTTTAAAACCAATTTTGATATTGAA
81338939 A
1 A
81338940 GTTAATCACC
Statistics
Matches: 156, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
163 27 0.17
164 120 0.77
165 9 0.06
ACGTcount: A:0.34, C:0.06, G:0.19, T:0.41
Consensus pattern (165 bp):
AAGTGAACAATTTGAGTCATTTTTTAGAATTTTGGATTAATCAGATAAAAATATGATGAAGATAT
TTTTTTCATTAGCACTTATGGCTATTAATGTATTAGTGTTTATAAGCATGTGTGGTGATAGGAGG
AAAATTTGATTTTTAAAACCAATTTTGATATTGAA
Found at i:81342203 original size:27 final size:27
Alignment explanation
Indices: 81342172--81342349 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
81342162 TAAATTGTAC
*
81342172 AGCACTGAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
81342199 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
81342225 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
81342253 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
81342281 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
81342308 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
81342335 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
81342350 GACTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:81342340 original size:82 final size:81
Alignment explanation
Indices: 81342169--81342349 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
81342159 GATTAAATTG
* *
81342169 TACAGCACTGAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTGAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
81342234 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
81342250 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTGAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
81342314 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
*
81342332 TATAGCACTGAGTGTGCG
1 TACAGCACTGAGTGTGCG
81342350 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 17 0.20
82 66 0.80
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTGAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:81344811 original size:38 final size:38
Alignment explanation
Indices: 81344719--81344843 Score: 160
Period size: 39 Copynumber: 3.2 Consensus size: 38
81344709 GGCACGAAGG
* * * *
81344719 CCCGAATATAATACCAGCACTAGGCCTGCGGGATATTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGAT-TTAA
81344758 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
** *
81344796 CCCGGATATTTTACCAGCACGAAGCCTGCGGGTCTTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGG-ATTTAA
81344835 GCCCGGATA
1 -CCCGGATA
81344844 CACATCAAAT
Statistics
Matches: 77, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
38 33 0.43
39 36 0.47
40 8 0.10
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:81352295 original size:42 final size:42
Alignment explanation
Indices: 81352175--81352341 Score: 115
Period size: 42 Copynumber: 4.0 Consensus size: 42
81352165 AATCATACCA
* * **** ***
81352175 ATGCCATATCTCAGATATGGTCTTACATGTGATCTCATATTA
1 ATGCCATATCCCAGACATGGTCTTACACAAAATCTCATAACG
* * * *
81352217 ATGCCAATAGCCCAG-CTATGGTCTTACAC-GATTCTCATATCG
1 ATGCC-ATATCCCAGAC-ATGGTCTTACACAAAATCTCATAACG
* * *
81352259 ATGCCATGTTCCTGACATGGTCTTACACAAAATCTCATAACG
1 ATGCCATATCCCAGACATGGTCTTACACAAAATCTCATAACG
* * *
81352301 ATGTCATATCCCAGATATGGTTTTACACATAAA-CTCATAAC
1 ATGCCATATCCCAGACATGGTCTTACACA-AAATCTCATAAC
81352342 CCTAATGTCA
Statistics
Matches: 98, Mismatches: 22, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
41 17 0.17
42 60 0.61
43 21 0.21
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGACATGGTCTTACACAAAATCTCATAACG
Found at i:81362671 original size:49 final size:49
Alignment explanation
Indices: 81362616--81362711 Score: 174
Period size: 49 Copynumber: 2.0 Consensus size: 49
81362606 AACTCTTCCC
81362616 TGTTCTGCTGTTCGACAGTTTCAACTATTCTTCACTAAAAATTAATCCT
1 TGTTCTGCTGTTCGACAGTTTCAACTATTCTTCACTAAAAATTAATCCT
* *
81362665 TGTTCTGTTGTTCGACAGTTTCAACTCTTCTTCACTAAAAATTAATC
1 TGTTCTGCTGTTCGACAGTTTCAACTATTCTTCACTAAAAATTAATC
81362712 ATCTCCTAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.26, C:0.22, G:0.10, T:0.42
Consensus pattern (49 bp):
TGTTCTGCTGTTCGACAGTTTCAACTATTCTTCACTAAAAATTAATCCT
Found at i:81363658 original size:48 final size:48
Alignment explanation
Indices: 81363558--81363693 Score: 150
Period size: 48 Copynumber: 2.8 Consensus size: 48
81363548 GTAAAATGTT
* * ** *
81363558 GATGCCATATCCCAGACATGGTCTTACACTGGCTCACATGTTGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAATGAGGCC
* **
81363606 GATGCCGTGTCCCAGACATGGTCTTACACTAGCTCTTATAATGTA-GCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAATG-AGGCC
* *
81363654 GATGCCATGTCCCAAACATGGTATTACACTAG-TGCACATA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCT-CACATA
81363694 TCACCCAAAT
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
47 1 0.01
48 71 0.97
49 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAATGAGGCC
Found at i:81363920 original size:168 final size:168
Alignment explanation
Indices: 81363642--81363978 Score: 674
Period size: 168 Copynumber: 2.0 Consensus size: 168
81363632 CACTAGCTCT
81363642 TATAATGTAGCCGATGCCATGTCCCAAACATGGTATTACACTAGTGCACATATCACCCAAATGTC
1 TATAATGTAGCCGATGCCATGTCCCAAACATGGTATTACACTAGTGCACATATCACCCAAATGTC
81363707 TTGGCATGGATATCCGATCTATTCTTAGGTTCAACCAGGAATTTACCACATTTAAATTTCATCAT
66 TTGGCATGGATATCCGATCTATTCTTAGGTTCAACCAGGAATTTACCACATTTAAATTTCATCAT
81363772 GCATTATACATATGCATATTCAACCATATTATGCAAAA
131 GCATTATACATATGCATATTCAACCATATTATGCAAAA
81363810 TATAATGTAGCCGATGCCATGTCCCAAACATGGTATTACACTAGTGCACATATCACCCAAATGTC
1 TATAATGTAGCCGATGCCATGTCCCAAACATGGTATTACACTAGTGCACATATCACCCAAATGTC
81363875 TTGGCATGGATATCCGATCTATTCTTAGGTTCAACCAGGAATTTACCACATTTAAATTTCATCAT
66 TTGGCATGGATATCCGATCTATTCTTAGGTTCAACCAGGAATTTACCACATTTAAATTTCATCAT
81363940 GCATTATACATATGCATATTCAACCATATTATGCAAAA
131 GCATTATACATATGCATATTCAACCATATTATGCAAAA
81363978 T
1 T
81363979 CAATCATTCA
Statistics
Matches: 169, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
168 169 1.00
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.32
Consensus pattern (168 bp):
TATAATGTAGCCGATGCCATGTCCCAAACATGGTATTACACTAGTGCACATATCACCCAAATGTC
TTGGCATGGATATCCGATCTATTCTTAGGTTCAACCAGGAATTTACCACATTTAAATTTCATCAT
GCATTATACATATGCATATTCAACCATATTATGCAAAA
Found at i:81366666 original size:64 final size:64
Alignment explanation
Indices: 81366546--81366666 Score: 145
Period size: 64 Copynumber: 1.9 Consensus size: 64
81366536 GTATCGAGTA
* * ** * *
81366546 ATGCAATATGTACTCTATTTTAAATGGTTAAATATTGCAGGTACGGTAAGTTCATATGCAAATT
1 ATGCAATATGTACTATATTTTAAATGCTTAAATATTGCACATACGGTAAATACATATGCAAATT
* * *
81366610 ATGCAATATGTAGC-ATATTTTAAATTCTTTAATATTGCACATATGGTAAATACATAT
1 ATGCAATATGTA-CTATATTTTAAATGCTTAAATATTGCACATACGGTAAATACATAT
81366667 ATAATTGATG
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
64 46 0.98
65 1 0.02
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.39
Consensus pattern (64 bp):
ATGCAATATGTACTATATTTTAAATGCTTAAATATTGCACATACGGTAAATACATATGCAAATT
Found at i:81371161 original size:46 final size:46
Alignment explanation
Indices: 81371109--81371237 Score: 170
Period size: 46 Copynumber: 2.8 Consensus size: 46
81371099 TGTAACCCGC
* * * *
81371109 CCATAAGTGAACTCGGAATCAACTGAACAAGCTC-GAGCGTTAGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA-CGTTAGCAT
* * *
81371155 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTAGCAT
*
81371201 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
81371238 TGCCTAGTTA
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
46 70 0.97
47 2 0.03
ACGTcount: A:0.32, C:0.25, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTAGCAT
Found at i:81376253 original size:46 final size:46
Alignment explanation
Indices: 81376186--81376314 Score: 206
Period size: 46 Copynumber: 2.8 Consensus size: 46
81376176 TGTAACCCGC
* *
81376186 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA-CGTTCGCAT
*
81376232 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
*
81376278 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
81376315 TGCCTAGTTA
Statistics
Matches: 77, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
46 75 0.97
47 2 0.03
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
Found at i:81382168 original size:22 final size:21
Alignment explanation
Indices: 81382139--81382184 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
81382129 AAGATGATAA
81382139 TATTTAATATATA-ATTATATC
1 TATTTAATATATATATTA-ATC
*
81382160 TATTATAATTTATATATTAATC
1 TATT-TAATATATATATTAATC
81382182 TAT
1 TAT
81382185 ATCAACTTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 4 0.18
22 14 0.64
23 4 0.18
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.54
Consensus pattern (21 bp):
TATTTAATATATATATTAATC
Found at i:81384748 original size:25 final size:25
Alignment explanation
Indices: 81384673--81384748 Score: 68
Period size: 25 Copynumber: 3.0 Consensus size: 25
81384663 TAACCATTCC
81384673 CATGGCCAATCCTTGTCAAGCATAT
1 CATGGCCAATCCTTGTCAAGCATAT
* ** *
81384698 CCAT-ACCAAATGATTAT-AA-CATTAT
1 -CATGGCC-AATCCTTGTCAAGCA-TAT
81384723 CATGGCCAATCCTTGTCAAGCATAT
1 CATGGCCAATCCTTGTCAAGCATAT
81384748 C
1 C
81384749 CACAGCTCTC
Statistics
Matches: 37, Mismatches: 8, Indels: 11
0.66 0.14 0.20
Matches are distributed among these distances:
24 11 0.30
25 15 0.41
26 11 0.30
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (25 bp):
CATGGCCAATCCTTGTCAAGCATAT
Found at i:81384864 original size:84 final size:84
Alignment explanation
Indices: 81384723--81384877 Score: 301
Period size: 84 Copynumber: 1.8 Consensus size: 84
81384713 ATAACATTAT
*
81384723 CATGGCCAATCCTTGTCAAGCATATCCACAGCTCTCAATAACCATATCCATACCAAATGATTATA
1 CATGGCCAATCCTTGTCAAGCATATCCACACCTCTCAATAACCATATCCATACCAAATGATTATA
81384788 ACATTAAATTAACCATTCC
66 ACATTAAATTAACCATTCC
81384807 CATGGCCAATCCTTGTCAAGCATATCCACACCTCTCAATAACCATATCCATACCAAATGATTATA
1 CATGGCCAATCCTTGTCAAGCATATCCACACCTCTCAATAACCATATCCATACCAAATGATTATA
81384872 ACATTA
66 ACATTA
81384878 TACTCAAACA
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
84 70 1.00
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (84 bp):
CATGGCCAATCCTTGTCAAGCATATCCACACCTCTCAATAACCATATCCATACCAAATGATTATA
ACATTAAATTAACCATTCC
Found at i:81385561 original size:40 final size:40
Alignment explanation
Indices: 81385456--81385597 Score: 164
Period size: 40 Copynumber: 3.5 Consensus size: 40
81385446 GCTACTCGTT
*
81385456 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
81385496 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
81385536 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
81385577 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
81385598 GGGACATCAT
Statistics
Matches: 87, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
39 3 0.03
40 71 0.82
41 13 0.15
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:81386202 original size:90 final size:90
Alignment explanation
Indices: 81386095--81386274 Score: 351
Period size: 90 Copynumber: 2.0 Consensus size: 90
81386085 TGCATTACTC
81386095 ATTAATATACAAAAATTATATTCGGCCTTAGCACACAACTTGCTAGCCAATTCTTCTCCATCTAG
1 ATTAATATACAAAAATTATATTCGGCCTTAGCACACAACTTGCTAGCCAATTCTTCTCCATCTAG
81386160 CAACCAATGCACATATGTGCTCACT
66 CAACCAATGCACATATGTGCTCACT
*
81386185 ATTAATATACAAAAATTATATTCGGCCTTAGCACACAACTTGCTAGCCGATTCTTCTCCATCTAG
1 ATTAATATACAAAAATTATATTCGGCCTTAGCACACAACTTGCTAGCCAATTCTTCTCCATCTAG
81386250 CAACCAATGCACATATGTGCTCACT
66 CAACCAATGCACATATGTGCTCACT
81386275 CAAAAATGCT
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
90 89 1.00
ACGTcount: A:0.33, C:0.27, G:0.11, T:0.30
Consensus pattern (90 bp):
ATTAATATACAAAAATTATATTCGGCCTTAGCACACAACTTGCTAGCCAATTCTTCTCCATCTAG
CAACCAATGCACATATGTGCTCACT
Found at i:81387812 original size:50 final size:50
Alignment explanation
Indices: 81387737--81387836 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
81387727 AATTTTACTT
*
81387737 TCACCGAGCTCGGTCCAAAATAATGGTGTACGGCATTTACGACCGTACAA
1 TCACCGAGCTCGGTCCAAAACAATGGTGTACGGCATTTACGACCGTACAA
81387787 TCACCGAGCTCGGTCCAAAACAATGGTGTACGGCATTTACGACCGTACAA
1 TCACCGAGCTCGGTCCAAAACAATGGTGTACGGCATTTACGACCGTACAA
81387837 AGCCTCGTAA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.21
Consensus pattern (50 bp):
TCACCGAGCTCGGTCCAAAACAATGGTGTACGGCATTTACGACCGTACAA
Found at i:81393415 original size:40 final size:40
Alignment explanation
Indices: 81393378--81393889 Score: 633
Period size: 40 Copynumber: 12.7 Consensus size: 40
81393368 GCTACTCGTT
* *
81393378 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
* * *
81393418 CAATTGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
81393458 CAAACTCGCACATTTGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAA-T-GC-C--TT--C---GGGACTTAACCCGGATTTAGTAACTCGCA
* * *
81393508 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
81393547 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
81393587 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
81393626 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
81393666 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
81393705 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
81393745 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
81393784 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * * *
81393824 CAAATGCCTTC-GGATCTTAGTCCAGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
81393865 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
81393890 CATCATTCAA
Statistics
Matches: 413, Mismatches: 41, Indels: 36
0.84 0.08 0.07
Matches are distributed among these distances:
39 147 0.36
40 208 0.50
41 14 0.03
42 2 0.00
43 2 0.00
45 4 0.01
47 1 0.00
48 2 0.00
49 1 0.00
50 32 0.08
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:81393485 original size:50 final size:50
Alignment explanation
Indices: 81393410--81393511 Score: 186
Period size: 50 Copynumber: 2.0 Consensus size: 50
81393400 CGGTTATAGT
*
81393410 AACTCGCACAATTGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCGCA
1 AACTCGCACAATTGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCACA
*
81393460 AACTCGCACATTTGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCACA
1 AACTCGCACAATTGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCACA
81393510 AA
1 AA
81393512 TGCCTTCGGG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.26
Consensus pattern (50 bp):
AACTCGCACAATTGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCACA
Found at i:81393593 original size:79 final size:79
Alignment explanation
Indices: 81393462--81393836 Score: 723
Period size: 79 Copynumber: 4.7 Consensus size: 79
81393452 CTCGCGCAAA
** *
81393462 CTCGCACATTTGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGCTTAG
1 CTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGCTTAG
81393527 CCCGGAATTAGTAT
66 CCCGGAATTAGTAT
81393541 CTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGCTTAG
1 CTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGCTTAG
81393606 CCCGGAATTAGTAT
66 CCCGGAATTAGTAT
81393620 CTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGCTTAG
1 CTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGCTTAG
81393685 CCCGGAATTAGTAT
66 CCCGGAATTAGTAT
81393699 CTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGCTTAG
1 CTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGCTTAG
81393764 CCCGGAATTAGTAT
66 CCCGGAATTAGTAT
81393778 CTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGG
1 CTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGG
81393837 ATCTTAGTCC
Statistics
Matches: 293, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 293 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (79 bp):
CTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGCTTAG
CCCGGAATTAGTAT
Found at i:81411708 original size:39 final size:41
Alignment explanation
Indices: 81411637--81411821 Score: 204
Period size: 40 Copynumber: 4.6 Consensus size: 41
81411627 GCTACTCGTT
* *
81411637 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCA
*
81411677 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCA
* * *
81411716 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCA
* * * * *
81411756 CAAATGCCTTC-GGATCTTAGTCTGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAATATAGTAAC-TCGCA
81411797 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
81411822 CATCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 13
0.81 0.11 0.09
Matches are distributed among these distances:
39 39 0.32
40 73 0.60
41 10 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCA
Found at i:81415353 original size:40 final size:40
Alignment explanation
Indices: 81415309--81415518 Score: 289
Period size: 40 Copynumber: 5.2 Consensus size: 40
81415299 GAGATTTAAT
* **
81415309 CGGATATAGCAACTCGCACAAATGCCTTCGGGTTTTAGCC
1 CGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCC
**
81415349 CGGATATAGTC-ACTAGCATGAATGCCTTCGGGACTTAGCC
1 CGGATATAG-CAACTAGCACAAATGCCTTCGGGACTTAGCC
81415389 CGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCC
1 CGGATATAG-CAACTAGCACAAATGCCTTCGGGACTTAGCC
*
81415429 CGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCC
1 CGGATATAGCAACTA---GCACAAATGCCTTCGGGACTTAGCC
* *
81415472 CGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCC
1 CGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCC
81415512 CGGATAT
1 CGGATAT
81415519 CATCCGAATA
Statistics
Matches: 154, Mismatches: 11, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
39 1 0.01
40 115 0.75
41 1 0.01
43 37 0.24
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCC
Found at i:81415491 original size:83 final size:80
Alignment explanation
Indices: 81415309--81415518 Score: 296
Period size: 83 Copynumber: 2.6 Consensus size: 80
81415299 GAGATTTAAT
* * ** **
81415309 CGGATATAGCAACTCGCACAAATGCCTTCGGGTTTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
81415374 CTTCGGGACTTAGCC
66 CTTCGGGACTTAGCC
* *
81415389 CGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAA
1 CGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAA
81415453 ATGCCTTCGGGACTTAGCC
62 ATGCCTTCGGGACTTAGCC
*
81415472 CGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
81415519 CATCCGAATA
Statistics
Matches: 115, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
79 1 0.01
80 47 0.41
83 67 0.58
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
CGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
CTTCGGGACTTAGCC
Found at i:81423585 original size:65 final size:64
Alignment explanation
Indices: 81423483--81423607 Score: 164
Period size: 65 Copynumber: 1.9 Consensus size: 64
81423473 ATGTGAGAAC
*
81423483 TGAGGGGTATACTGACTTATCAACACGGTCGAGTCACACGCCCATGTGCT-AGGCCGTGTACCAT
1 TGAGGGGTATACTGACTTATCAACACGGCCGAGTCACACGCCCATGTG-TGAGGCCGTGTACCAT
* * * *
81423547 TGAGGGGATATACTGACTTGTACCACATGGCCGA-TCACACGCCCGTGTGTGAGGCCGTGTA
1 TGAGGGG-TATACTGACTTAT-CAACACGGCCGAGTCACACGCCCATGTGTGAGGCCGTGTA
81423608 GAGCATACTG
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
64 8 0.15
65 36 0.68
66 9 0.17
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (64 bp):
TGAGGGGTATACTGACTTATCAACACGGCCGAGTCACACGCCCATGTGTGAGGCCGTGTACCAT
Found at i:81425639 original size:68 final size:64
Alignment explanation
Indices: 81425522--81425774 Score: 217
Period size: 68 Copynumber: 3.9 Consensus size: 64
81425512 ATACAGATGG
** * * *
81425522 TATGTAGCTAGGTCACATGTATGGTGCTAAGTGCACATCATGTGTACAAGAGAGCTACGAGACAT
1 TATGTAGCTAGGTCACATGGGTGGTACTAAGTGTACACCATGTGTACAAGAGAGCTACGAG--A-
81425587 TA
63 TA
* * * * *
81425589 TGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGATCTACGGGAT
1 T-ATGTAGCTAGGTCACATGGGTGGTACTAAGTGTACACCATGT-GTACAAGAGAGCTACGAGAT
81425653 A
64 A
* * * * * * *
81425654 TATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAG-ACAAGAGAGCTATGAG
1 TATGTAGCTAGGTCACATGGGTGGTACTAAGT---GTACACCATGT-GTACAAGAGAGCTACGAG
81425718 ATA
62 ATA
* *
81425721 AACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGTGTACAAGAGAGC
1 TA-TGTAGCTAGGTCACATGGGTGGTACTAAGTGTACACCATGTGTACAAGAGAGC
81425775 CAAAATTATG
Statistics
Matches: 152, Mismatches: 27, Indels: 18
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 26 0.17
65 3 0.02
66 22 0.14
67 30 0.20
68 50 0.33
69 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.25
Consensus pattern (64 bp):
TATGTAGCTAGGTCACATGGGTGGTACTAAGTGTACACCATGTGTACAAGAGAGCTACGAGATA
Found at i:81431394 original size:24 final size:26
Alignment explanation
Indices: 81431362--81431430 Score: 81
Period size: 24 Copynumber: 2.8 Consensus size: 26
81431352 AGCTGATGGA
81431362 CAGTAAGCTCATAAGAGCTGAGA-AT
1 CAGTAAGCTCATAAGAGCTGAGATAT
* *
81431387 -AGTAAGCTC-TTAGAGCTGATATAT
1 CAGTAAGCTCATAAGAGCTGAGATAT
* *
81431411 CGGTAAGCTCATATGAGCTG
1 CAGTAAGCTCATAAGAGCTG
81431431 TAGTGAGTCC
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
23 10 0.28
24 11 0.31
25 8 0.22
26 7 0.19
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (26 bp):
CAGTAAGCTCATAAGAGCTGAGATAT
Found at i:81435096 original size:54 final size:54
Alignment explanation
Indices: 81435030--81435138 Score: 200
Period size: 54 Copynumber: 2.0 Consensus size: 54
81435020 GCCATTTACA
81435030 TAATGTACAATAAAACTCATTATCATAATTCATTCATTCACTTCTTCCAAGGTC
1 TAATGTACAATAAAACTCATTATCATAATTCATTCATTCACTTCTTCCAAGGTC
* *
81435084 TAATGTATAATAAAACTCATTATCATAATTCATTCATTCATTTCTTCCAAGGTC
1 TAATGTACAATAAAACTCATTATCATAATTCATTCATTCACTTCTTCCAAGGTC
81435138 T
1 T
81435139 CATTGATTCA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.35, C:0.20, G:0.06, T:0.39
Consensus pattern (54 bp):
TAATGTACAATAAAACTCATTATCATAATTCATTCATTCACTTCTTCCAAGGTC
Found at i:81435414 original size:43 final size:46
Alignment explanation
Indices: 81435316--81435442 Score: 143
Period size: 48 Copynumber: 2.8 Consensus size: 46
81435306 TCAAATCTTG
*
81435316 GATATGGTCTTACATAGGATCACATATCGATGCCAATGCCATGTCCTA
1 GATATGGTCTTACATGGGATCACATATCGATGCCAAT--CATGTCCTA
* *
81435364 GACATGGTCTTACATGGGATCACATATCGATGCCGAT-A-G-CCTA
1 GATATGGTCTTACATGGGATCACATATCGATGCCAATCATGTCCTA
* * ** *
81435407 GTTATGGTCTTACACGAAATTACATATCGATGCCAA
1 GATATGGTCTTACATGGGATCACATATCGATGCCAA
81435443 AGCCATGTCC
Statistics
Matches: 69, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
43 33 0.48
44 1 0.01
45 1 0.01
48 34 0.49
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (46 bp):
GATATGGTCTTACATGGGATCACATATCGATGCCAATCATGTCCTA
Found at i:81441500 original size:37 final size:37
Alignment explanation
Indices: 81441447--81441549 Score: 152
Period size: 37 Copynumber: 2.8 Consensus size: 37
81441437 CGAATAGTCC
* * *
81441447 CCACACGTAGTTATCGGATCTTACCCGGGCAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
81441484 CTACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
81441521 CCACACGTAGTCATCGGGTTTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
81441550 ATATATTTCC
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.25
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:81441816 original size:48 final size:48
Alignment explanation
Indices: 81441690--81442993 Score: 2396
Period size: 48 Copynumber: 27.0 Consensus size: 48
81441680 ATATACACAC
* *
81441690 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
81441738 ATCTCATATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
81441788 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
81441836 ATCTCATAAATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCAT--ACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
81441886 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
81441934 ATCTCATAAATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCAT--ACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
81441984 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
81442032 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
81442080 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATGC--
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
81442128 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
81442176 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
81442224 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
81442272 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
81442320 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
81442368 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
81442416 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
81442464 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
81442512 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
81442560 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
81442608 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
81442656 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
81442704 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
81442752 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
81442800 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
81442848 ATCTCACACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
81442896 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
81442944 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
81442992 AT
1 AT
81442994 ATATTTATCT
Statistics
Matches: 1232, Mismatches: 14, Indels: 20
0.97 0.01 0.02
Matches are distributed among these distances:
46 39 0.03
48 1014 0.82
50 179 0.15
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:81452045 original size:15 final size:17
Alignment explanation
Indices: 81452015--81452046 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
81452005 TTGATACTTG
81452015 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
81452032 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
81452047 AATTATGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:81460960 original size:94 final size:94
Alignment explanation
Indices: 81460799--81460983 Score: 325
Period size: 94 Copynumber: 2.0 Consensus size: 94
81460789 GTTAGGGGGC
* *
81460799 GGGGGAGGTCTTGTTATATTGGGGTGATTTATCAGATAATCCCCAAAACATTCATCCATCATATC
1 GGGGGAGGTCTTGTTATATTAGGGCGATTTATCAGATAATCCCCAAAACATTCATCCATCATATC
81460864 AAAGAAGGCAGCTCGGGCCTCTTTTCAGA
66 AAAGAAGGCAGCTCGGGCCTCTTTTCAGA
* *
81460893 GGGGGAGGTCTTGTTATATTAGGGCGATTTCTCAGATAATCCCCAAACCATTCATCCATCATATC
1 GGGGGAGGTCTTGTTATATTAGGGCGATTTATCAGATAATCCCCAAAACATTCATCCATCATATC
*
81460958 AAAGAAGGCAGCTTGGGCCTCTTTTC
66 AAAGAAGGCAGCTCGGGCCTCTTTTC
81460984 GGCCTTCTGA
Statistics
Matches: 86, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
94 86 1.00
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (94 bp):
GGGGGAGGTCTTGTTATATTAGGGCGATTTATCAGATAATCCCCAAAACATTCATCCATCATATC
AAAGAAGGCAGCTCGGGCCTCTTTTCAGA
Found at i:81465143 original size:21 final size:21
Alignment explanation
Indices: 81465113--81465163 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
81465103 TTTATCCTAA
*
81465113 ACCCCTAAACATTTTTACTTT
1 ACCCCCAAACATTTTTACTTT
81465134 ACCCCCAAACATTTTTACTTT
1 ACCCCCAAACATTTTTACTTT
**
81465155 TTCCCCAAA
1 ACCCCCAAA
81465164 ACTTTACTCC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.29, C:0.33, G:0.00, T:0.37
Consensus pattern (21 bp):
ACCCCCAAACATTTTTACTTT
Found at i:81466670 original size:8 final size:8
Alignment explanation
Indices: 81466652--81466682 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
81466642 ACTGAAAAAA
81466652 AAAACCTTC
1 AAAA-CTTC
81466661 AAAACTTC
1 AAAACTTC
81466669 AAAACTTC
1 AAAACTTC
81466677 AAAACT
1 AAAACT
81466683 AAACAAAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 18 0.82
9 4 0.18
ACGTcount: A:0.52, C:0.26, G:0.00, T:0.23
Consensus pattern (8 bp):
AAAACTTC
Found at i:81467192 original size:22 final size:22
Alignment explanation
Indices: 81467149--81467204 Score: 53
Period size: 22 Copynumber: 2.6 Consensus size: 22
81467139 TAGTCATATA
* * *
81467149 ATAAATTATTAATATAAGAAAT
1 ATAATTTATTATTTTAAGAAAT
*
81467171 ATAATTTATTATTTTAATAAAT
1 ATAATTTATTATTTTAAGAAAT
*
81467193 -T-ATTTAATATTT
1 ATAATTTATTATTT
81467205 CAATTTTATT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 10 0.34
21 1 0.03
22 18 0.62
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (22 bp):
ATAATTTATTATTTTAAGAAAT
Done.