Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 246 of 276
Found at i:81467305 original size:15 final size:15
Alignment explanation
Indices: 81467285--81467341 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
81467275 ATTCAATATT
81467285 AATATTTTAATAATA
1 AATATTTTAATAATA
*
81467300 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
81467319 AATATATTAATAATA
1 AATATTTTAATAATA
*
81467334 AATGTTTT
1 AATATTTT
81467342 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:81467742 original size:13 final size:13
Alignment explanation
Indices: 81467724--81467756 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
81467714 TATTTTACTT
81467724 TTTTCAGAAATTA
1 TTTTCAGAAATTA
*
81467737 TTTTCAGAAGTTA
1 TTTTCAGAAATTA
81467750 TTTTCAG
1 TTTTCAG
81467757 TGAAACAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.30, C:0.09, G:0.12, T:0.48
Consensus pattern (13 bp):
TTTTCAGAAATTA
Found at i:81478373 original size:48 final size:46
Alignment explanation
Indices: 81478287--81478417 Score: 174
Period size: 47 Copynumber: 2.8 Consensus size: 46
81478277 CTTCCGTCGA
* * *
81478287 GGCCGATGCATGTCCTAGACATGTCTTACACTGGCACTCAT-CTCT
1 GGCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATAATGT
* *
81478332 GTGCCGATGCCATGTCCCAGACATGGTCTTATATTGGCACTCATAATGT
1 G-GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATAATGT
*
81478381 GGCTGATGCATGTCCCAGACATGTCTTACACTGGCAC
1 GGCCGATGCATGTCCCAGACATGTCTTACACTGGCAC
81478418 ACAAGAAATC
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
45 1 0.01
46 20 0.27
47 27 0.36
48 23 0.31
49 3 0.04
ACGTcount: A:0.21, C:0.28, G:0.22, T:0.28
Consensus pattern (46 bp):
GGCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATAATGT
Found at i:81478561 original size:17 final size:17
Alignment explanation
Indices: 81478536--81478568 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
81478526 ATACTATATC
*
81478536 AATTTAATGACAATTCG
1 AATTCAATGACAATTCG
81478553 AATTCAATGACAATTC
1 AATTCAATGACAATTC
81478569 AAATACATAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.15, G:0.09, T:0.33
Consensus pattern (17 bp):
AATTCAATGACAATTCG
Found at i:81481724 original size:46 final size:46
Alignment explanation
Indices: 81481652--81481825 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
81481642 TGTAATCTGC
*
81481652 CCATAAGGGAACTCGGACTCAACTCAACGAGCTCGAGCGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGCGTTCGTAT
* * *
81481698 CCATAAGTGAACTCGGACTCAGCTCAACGAGCTC-AG-GATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGCG-TTCGTA--T
* * * * * *
81481745 ACATCTCA-CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGCTCGAGCGTTCGTAT
*
81481792 CCATAAGTGAACTCGGACTCAACTCAATGAGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC
81481826 TGATGCCCAA
Statistics
Matches: 103, Mismatches: 17, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
44 1 0.01
45 8 0.08
46 57 0.55
47 6 0.06
48 25 0.24
49 6 0.06
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGCGTTCGTAT
Found at i:81487743 original size:35 final size:34
Alignment explanation
Indices: 81487703--81487771 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 34
81487693 CCGCCCCTTC
81487703 AGCAGGAGCTGGCGCATTGCTCTCTACATCATCA
1 AGCAGGAGCTGGCGCATTGCTCTCTACATCATCA
*
81487737 ANGCAGGAGCTGGTGCATTGCTCTCTACATCATCA
1 A-GCAGGAGCTGGCGCATTGCTCTCTACATCATCA
81487772 GCCACAGTTG
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 1 0.03
35 32 0.97
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (34 bp):
AGCAGGAGCTGGCGCATTGCTCTCTACATCATCA
Found at i:81489407 original size:46 final size:46
Alignment explanation
Indices: 81489239--81489413 Score: 137
Period size: 46 Copynumber: 3.8 Consensus size: 46
81489229 TGTAACCCGC
* * * * *
81489239 CCATAAGCGAACTCGGACTCAGCTCAATGAGCTC-GAGCGTTCGCAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCAG-GCATTCACAT
* * *
81489285 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTCTAGTT-ACAT
1 CCATAAGCGAACTCAGACTCAACTCAACGAGCTC--A-GGC-A-TTCACAT
* * *
81489335 -C-TCA-CGAACT-AGGACTCAACTTAACGAGATCAGGCATTCACAT
1 CCATAAGCGAACTCA-GACTCAACTCAACGAGCTCAGGCATTCACAT
*
81489378 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCAG
1 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCAG
81489414 ATGCCCAAAT
Statistics
Matches: 101, Mismatches: 16, Indels: 24
0.72 0.11 0.17
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 3 0.03
45 3 0.03
46 55 0.54
47 23 0.23
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCAGACTCAACTCAACGAGCTCAGGCATTCACAT
Found at i:81491414 original size:43 final size:42
Alignment explanation
Indices: 81491336--81491449 Score: 140
Period size: 43 Copynumber: 2.7 Consensus size: 42
81491326 GTTAAGATTA
* **
81491336 CATGTAAGACCATATCTGGGATATGGCATCAATATGATATTT
1 CATGTAAGACCATATCTGGGATATGGCATCAATATGAGATCC
* * *
81491378 CGTGTAAGACCATAGT-TGGGCTATTGGCATCGATATGAGATCC
1 CATGTAAGACCATA-TCTGGGATA-TGGCATCAATATGAGATCC
*
81491421 CATGTAAGACCATATCTGGGATTTGGCAT
1 CATGTAAGACCATATCTGGGATATGGCAT
81491450 TGGTATGGTA
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
42 26 0.43
43 34 0.57
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.31
Consensus pattern (42 bp):
CATGTAAGACCATATCTGGGATATGGCATCAATATGAGATCC
Found at i:81493004 original size:53 final size:53
Alignment explanation
Indices: 81492826--81493034 Score: 211
Period size: 53 Copynumber: 3.9 Consensus size: 53
81492816 TTTAGGGTTT
* * * * *
81492826 AAGGATACCAAGTAAGACCATGCCAAGGCATGACATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTTATAAGGC
* * * * * * * ** *
81492880 AAGGAAATCATGAAAGACCATGTCAAGACATGGCATTGATAAACTACGATCAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGT-TTATAAGGC
* * * *
81492935 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTTATAAGGC
*
81492988 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTTA
81493035 AAAAGGAAAG
Statistics
Matches: 121, Mismatches: 32, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
53 48 0.40
54 35 0.29
55 38 0.31
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTTATAAGGC
Found at i:81498147 original size:16 final size:17
Alignment explanation
Indices: 81498116--81498148 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
81498106 CGGGTTAGAG
81498116 ACACGGGCGTGTGTGACA
1 ACACGGGCG-GTGTGACA
81498134 ACACGGGC-GTGTGAC
1 ACACGGGCGGTGTGAC
81498149 CCCTATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.21, C:0.24, G:0.39, T:0.15
Consensus pattern (17 bp):
ACACGGGCGGTGTGACA
Found at i:81502713 original size:21 final size:21
Alignment explanation
Indices: 81502674--81502714 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
81502664 ATTACTCTAA
*
81502674 GGAAGCCGATTGATCCATCTC
1 GGAAGCCGATTCATCCATCTC
81502695 GGAAGCCGGATTCAT-CATCT
1 GGAAGCC-GATTCATCCATCT
81502715 AAACTGAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (21 bp):
GGAAGCCGATTCATCCATCTC
Found at i:81510720 original size:28 final size:28
Alignment explanation
Indices: 81510652--81510752 Score: 141
Period size: 28 Copynumber: 3.6 Consensus size: 28
81510642 ATATTAAGTC
* * *
81510652 CGCACACTCAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTACATAATCAAACT
*
81510679 CGCACACCTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
81510707 TGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
81510735 CGCACACTTAGTGCTACA
1 CGCACACTTAGTGCTACA
81510753 CAATTTAAAC
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
27 20 0.31
28 45 0.69
ACGTcount: A:0.32, C:0.30, G:0.14, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:81510773 original size:29 final size:28
Alignment explanation
Indices: 81510679--81510774 Score: 95
Period size: 28 Copynumber: 3.4 Consensus size: 28
81510669 ATAATCAGCT
* *
81510679 CGCACACCTAGTGCTACATAA-TCAAACT
1 CGCACACTTAGTGCTACA-AAGTCAAACC
* * *
81510707 TGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACAAAGTCAAACC
* *
81510735 CGCACACTTAGTGCTACACAATTTAAACC
1 CGCACACTTAGTGCTACA-AAGTCAAACC
*
81510764 CGCACTCTTAG
1 CGCACACTTAG
81510775 CGCCAATCTC
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
27 1 0.02
28 40 0.70
29 16 0.28
ACGTcount: A:0.32, C:0.30, G:0.12, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTACAAAGTCAAACC
Found at i:81518260 original size:48 final size:48
Alignment explanation
Indices: 81518189--81518283 Score: 154
Period size: 48 Copynumber: 2.0 Consensus size: 48
81518179 AATGTTCTCC
* *
81518189 TAGACCGACTAAAAAGAAGATACCAAAAGTTGCTAGCCGGTGTGATGT
1 TAGACCAACTAAAAAGAAAATACCAAAAGTTGCTAGCCGGTGTGATGT
* *
81518237 TAGACCAACTAAGAAGAAAATACCAAAGGTTGCTAGCCGGTGTGATG
1 TAGACCAACTAAAAAGAAAATACCAAAAGTTGCTAGCCGGTGTGATG
81518284 ACTCCAATGA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.20
Consensus pattern (48 bp):
TAGACCAACTAAAAAGAAAATACCAAAAGTTGCTAGCCGGTGTGATGT
Found at i:81518873 original size:28 final size:28
Alignment explanation
Indices: 81518810--81518960 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
81518800 ATATTAAGTC
*
81518810 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
81518837 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
81518865 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
81518893 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
81518921 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
81518950 CGCACACTTAG
1 CGCACACTTAG
81518961 CGCCAATCTC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.19
28 76 0.67
29 15 0.13
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:81527088 original size:29 final size:29
Alignment explanation
Indices: 81527025--81527092 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
81527015 TAATCAACCG
*
81527025 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
81527054 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
81527083 CGCACACTTA
1 CGCACACTTA
81527093 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:81527205 original size:174 final size:174
Alignment explanation
Indices: 81526914--81527241 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
81526904 AACTCAAGGT
* * *
81526914 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
*
81526979 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
81527044 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
81527088 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
81527153 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
*
81527218 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
81527242 TGTACAATTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:81527233 original size:29 final size:30
Alignment explanation
Indices: 81527194--81527272 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
81527184 CTTAATAATC
81527194 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
81527224 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
81527253 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
81527273 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:81528779 original size:47 final size:47
Alignment explanation
Indices: 81528700--81528870 Score: 252
Period size: 47 Copynumber: 3.6 Consensus size: 47
81528690 TGCAATTGGC
* * *
81528700 CACATATATGCATGTTCATATTCACCAAATTGGCCATTCGGCCTTAT
1 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
* * *
81528747 CACACATATGCGTGCTCACATTCATCACATTGGCCATTCGGCCTTAT
1 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
81528794 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
1 CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
* * **
81528841 CTCATATATGTACATTCACATTCATCACAT
1 CACATATATGCATGTTCACATTCATCACAT
81528871 AAAATCCTAA
Statistics
Matches: 111, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 111 1.00
ACGTcount: A:0.27, C:0.28, G:0.12, T:0.33
Consensus pattern (47 bp):
CACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
Found at i:81528797 original size:22 final size:22
Alignment explanation
Indices: 81528770--81528841 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
81528760 GCTCACATTC
81528770 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
81528792 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
81528816 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
81528839 ATC
1 ATC
81528842 TCATATATGT
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:81539818 original size:27 final size:26
Alignment explanation
Indices: 81539800--81539971 Score: 159
Period size: 27 Copynumber: 6.4 Consensus size: 26
81539790 TACTGAAATG
*
81539800 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACGA-TTTA
81539827 CCCTCGATTTATAGAATTACCG-TTTCA
1 CCCTCGATTTATAGAATTA-CGATTT-A
*
81539854 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACGA-TTTA
* * *
81539881 CCCTTGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTA-CGATTTA
* * *
81539908 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACGA-TTTA
* * *
81539935 CCCTC-AGTTTACAAAATTACCATTTTA
1 CCCTCGA-TTTATAGAATTACGA-TTTA
81539962 CCCTCGATTT
1 CCCTCGATTT
81539972 TGAAATTACT
Statistics
Matches: 127, Mismatches: 10, Indels: 16
0.83 0.07 0.10
Matches are distributed among these distances:
26 6 0.05
27 115 0.91
28 6 0.05
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.39
Consensus pattern (26 bp):
CCCTCGATTTATAGAATTACGATTTA
Found at i:81539869 original size:54 final size:54
Alignment explanation
Indices: 81539800--81539971 Score: 265
Period size: 54 Copynumber: 3.2 Consensus size: 54
81539790 TACTGAAATG
* *
81539800 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTA
*
81539854 CCCTCGATTTATAGAATTACCATTTTACCCTTGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTA
* * * *
81539908 CCCTCGATTTACAAAATTACCATTTTACCCTC-AGTTTACAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGA-TTTACAGAATTACCGTTTTA
81539962 CCCTCGATTT
1 CCCTCGATTT
81539972 TGAAATTACT
Statistics
Matches: 109, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
53 1 0.01
54 108 0.99
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.39
Consensus pattern (54 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTA
Found at i:81539926 original size:81 final size:81
Alignment explanation
Indices: 81539800--81539971 Score: 247
Period size: 81 Copynumber: 2.1 Consensus size: 81
81539790 TACTGAAATG
* * * *
81539800 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTC-GATTT
1 CCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTTCACCCTCAG-TTT
* *
81539864 ATAGAATTACCATTTTA
65 ACAAAATTACCATTTTA
* * *
81539881 CCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAGTTTA
1 CCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTTCACCCTCAGTTTA
81539946 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
81539962 CCCTCGATTT
1 CCCTCGATTT
81539972 TGAAATTACT
Statistics
Matches: 80, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
81 79 0.99
82 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.39
Consensus pattern (81 bp):
CCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTTCACCCTCAGTTTA
CAAAATTACCATTTTA
Found at i:81540043 original size:54 final size:53
Alignment explanation
Indices: 81539974--81540128 Score: 166
Period size: 54 Copynumber: 2.9 Consensus size: 53
81539964 CTCGATTTTG
* * *
81539974 AAATTACTAAAATACCCCTATAGGATAGAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTATTGG-TAAAATTACCAAAATACCCCTAGTTTGTA
* * ** * *
81540028 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAATACCATTGGTTTGTG
1 AAATTACCAAAATACCCCTA-TTGGTAAAATTACCAAAATACCCCTAGTTTGTA
* * * *
81540082 AAATTATCGAAATAGCCTCAATTGGTAAAATTACCAAAATACCCCTA
1 AAATTACCAAAATA-CCCCTATTGGTAAAATTACCAAAATACCCCTA
81540129 ATTTACAAAA
Statistics
Matches: 81, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
54 75 0.93
55 6 0.07
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.28
Consensus pattern (53 bp):
AAATTACCAAAATACCCCTATTGGTAAAATTACCAAAATACCCCTAGTTTGTA
Found at i:81540131 original size:27 final size:27
Alignment explanation
Indices: 81539974--81540141 Score: 142
Period size: 27 Copynumber: 6.2 Consensus size: 27
81539964 CTCGATTTTG
* **
81539974 AAATTACTAAAATACCCCT-ATAGGATA
1 AAATTACCAAAATACCCCTAATTTG-TA
* *
81540001 GAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAATTTGTA
*
81540028 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAATTTGTA
* ** ** *
81540055 AAATTACCGAAATACCATTGGTTTGTG
1 AAATTACCAAAATACCCCTAATTTGTA
* * * *
81540082 AAATTATCGAAATA-GCCTCAATTGGTA
1 AAATTACCAAAATACCCCT-AATTTGTA
**
81540109 AAATTACCAAAATACCCCTAATTTACA
1 AAATTACCAAAATACCCCTAATTTGTA
81540136 AAATTA
1 AAATTA
81540142 TAGAAATACC
Statistics
Matches: 113, Mismatches: 25, Indels: 6
0.78 0.17 0.04
Matches are distributed among these distances:
26 1 0.01
27 107 0.95
28 5 0.04
ACGTcount: A:0.42, C:0.19, G:0.10, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAATTTGTA
Found at i:81540140 original size:54 final size:54
Alignment explanation
Indices: 81539983--81540152 Score: 164
Period size: 54 Copynumber: 3.1 Consensus size: 54
81539973 GAAATTACTA
* * * *
81539983 AAATACCCCT-ATAGGATAGAATTACCAAAATACCCCTAGTTTGTAAAATTACCA
1 AAATACCCCTAATTGG-TAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCG
* * * ** * *
81540037 AAATACCCCTAGTTTGTAAAATTACCGAAATACCATTGGTTTGTGAAATTATCG
1 AAATACCCCTAATTGGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCG
* * ** *
81540091 AAATA-GCCTCAATTGGTAAAATTACCAAAATACCCCTAATTTACAAAATTATAG
1 AAATACCCCT-AATTGGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCG
81540145 AAATACCC
1 AAATACCC
81540153 TTGACTTTCT
Statistics
Matches: 89, Mismatches: 24, Indels: 5
0.75 0.20 0.04
Matches are distributed among these distances:
53 3 0.03
54 83 0.93
55 3 0.03
ACGTcount: A:0.42, C:0.20, G:0.10, T:0.28
Consensus pattern (54 bp):
AAATACCCCTAATTGGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCG
Found at i:81540148 original size:27 final size:27
Alignment explanation
Indices: 81540118--81540210 Score: 91
Period size: 27 Copynumber: 3.4 Consensus size: 27
81540108 AAAATTACCA
*
81540118 AAATACCCCTAATTTACAAAATTATAG
1 AAATACCCTTAATTTACAAAATTATAG
*
81540145 AAATACCCTTGACTTT-CTAAAAATTATAG
1 AAATACCCTT-AATTTAC--AAAATTATAG
* **
81540174 AAATACCATTGGTTTACAAAATTACTA-
1 AAATACCCTTAATTTACAAAATTA-TAG
81540201 AAATACCCTT
1 AAATACCCTT
81540211 GGTTTGTAGA
Statistics
Matches: 55, Mismatches: 6, Indels: 10
0.77 0.08 0.14
Matches are distributed among these distances:
27 26 0.47
28 9 0.16
29 20 0.36
ACGTcount: A:0.44, C:0.18, G:0.05, T:0.32
Consensus pattern (27 bp):
AAATACCCTTAATTTACAAAATTATAG
Found at i:81540212 original size:27 final size:27
Alignment explanation
Indices: 81540130--81540215 Score: 104
Period size: 27 Copynumber: 3.1 Consensus size: 27
81540120 ATACCCCTAA
*
81540130 TTTACAAAATTATAGAAATACCCTTGAC
1 TTTACAAAATTATAGAAATACCCTTG-G
*
81540158 TTT-CTAAAAATTATAGAAATACCATTGG
1 TTTAC--AAAATTATAGAAATACCCTTGG
81540186 TTTACAAAATTACTA-AAATACCCTTGG
1 TTTACAAAATTA-TAGAAATACCCTTGG
81540213 TTT
1 TTT
81540216 GTAGATTTAC
Statistics
Matches: 51, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
27 22 0.43
28 8 0.16
29 21 0.41
ACGTcount: A:0.41, C:0.15, G:0.08, T:0.36
Consensus pattern (27 bp):
TTTACAAAATTATAGAAATACCCTTGG
Found at i:81540333 original size:27 final size:27
Alignment explanation
Indices: 81540269--81540333 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
81540259 ATCTCTAATA
*
81540269 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
81540296 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
81540323 GGTAAAATGAC
1 GGTAAAATGAC
81540334 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:81541177 original size:25 final size:25
Alignment explanation
Indices: 81541144--81541213 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
81541134 AGGAAGTGTT
*
81541144 GAAAGGGCTCTGCCCCAGTTTACC-
1 GAAAGGGCTTTGCCCCAGTTTACCA
*
81541168 GAAAAGGGCTTTGCCCCAGTTTATCA
1 G-AAAGGGCTTTGCCCCAGTTTACCA
*
81541194 GAAAGGGCTTTGCCCTAGTT
1 GAAAGGGCTTTGCCCCAGTT
81541214 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
24 1 0.02
25 39 0.95
26 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (25 bp):
GAAAGGGCTTTGCCCCAGTTTACCA
Found at i:81541226 original size:24 final size:23
Alignment explanation
Indices: 81541145--81541240 Score: 75
Period size: 25 Copynumber: 3.9 Consensus size: 23
81541135 GGAAGTGTTG
* * *
81541145 AAAGGGCTCTGCCCCAGTTTACCGA
1 AAAGGGCTTTGCCCTAG-TTATC-A
*
81541170 AAAGGGCTTTGCCCCAGTTTATCA
1 AAAGGGCTTTGCCCTAG-TTATCA
*
81541194 GAAAGGGCTTTGCCCTAGTTATTA
1 -AAAGGGCTTTGCCCTAGTTATCA
**
81541218 AAAGAGGCTAGGCCTCTAGTTAT
1 AAAG-GGCTTTGCC-CTAGTTAT
81541241 ATGATAAAGC
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.06
24 13 0.21
25 45 0.73
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (23 bp):
AAAGGGCTTTGCCCTAGTTATCA
Found at i:81541420 original size:42 final size:42
Alignment explanation
Indices: 81541361--81541452 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
81541351 TAGTCTCCCC
* *
81541361 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTAACATTACATGTGATATTG
81541403 AAATGGGCTTGCATACATCCATTAACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTAACATTACATGTGATATTG
81541445 AAATGGGC
1 AAATGGGC
81541453 CTAAGGGCCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.33
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTAACATTACATGTGATATTG
Found at i:81542701 original size:27 final size:27
Alignment explanation
Indices: 81542671--81542744 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 27
81542661 TAATATCACA
**
81542671 GCAAAGCTGCCAGTAACAGTAAATGTG
1 GCAAAGCCACCAGTAACAGTAAATGTG
* **
81542698 GCAAAGCCACTAGTAACAGTAGTTGTG
1 GCAAAGCCACCAGTAACAGTAAATGTG
*
81542725 GCAGAGCCACCAGT-ACAGTA
1 GCAAAGCCACCAGTAACAGTA
81542745 CTTCCTCCGA
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
26 6 0.15
27 34 0.85
ACGTcount: A:0.35, C:0.22, G:0.26, T:0.18
Consensus pattern (27 bp):
GCAAAGCCACCAGTAACAGTAAATGTG
Found at i:81568782 original size:27 final size:28
Alignment explanation
Indices: 81568698--81568795 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
81568688 CATGAGATTG
* * * *
81568698 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
81568727 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
81568755 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
81568782 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
81568796 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:81568806 original size:27 final size:27
Alignment explanation
Indices: 81568726--81568808 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
81568716 TAAATTGTAC
* *
81568726 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
81568754 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
81568781 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
81568808 A
1 A
81568809 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:81568809 original size:29 final size:27
Alignment explanation
Indices: 81568698--81568809 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
81568688 CATGAGATTG
** * *
81568698 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
81568727 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
81568755 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
81568782 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
81568810 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:81572934 original size:40 final size:41
Alignment explanation
Indices: 81572890--81573074 Score: 252
Period size: 40 Copynumber: 4.6 Consensus size: 41
81572880 GCCACTTGCT
** *
81572890 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAGTTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
* *
81572930 CAAATGCCTTCGGGACTTAACCCGGATA-TAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
*
81572970 CAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
* * *
81573010 CAAATGCCTTCGGGACTTAGCCC-GAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
*
81573050 CAAATGCCTTCAGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
81573075 TTATCATCCG
Statistics
Matches: 132, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 3 0.02
40 128 0.97
41 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
Found at i:81583554 original size:43 final size:43
Alignment explanation
Indices: 81583491--81583584 Score: 125
Period size: 43 Copynumber: 2.2 Consensus size: 43
81583481 TCTTACTCGA
* * *
81583491 AATCAAATAATAATGCCAATGTCTCAAACATGATTTTACACAT
1 AATCACATAATAATGCCAATGTCCCAAACATGATCTTACACAT
* * * *
81583534 AATCACATAATGATGTCAATGTCCCAGACATGGTCTTACACAT
1 AATCACATAATAATGCCAATGTCCCAAACATGATCTTACACAT
81583577 AATCACAT
1 AATCACAT
81583585 CTCGTTAATC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (43 bp):
AATCACATAATAATGCCAATGTCCCAAACATGATCTTACACAT
Found at i:81586667 original size:40 final size:39
Alignment explanation
Indices: 81586583--81586807 Score: 190
Period size: 40 Copynumber: 5.6 Consensus size: 39
81586573 TTGAATGCTG
* * *
81586583 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACTATA
1 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGA-T-ACTAAA
**
81586623 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCGAAGGCATTTGTGCGAGATACTAAA
* *
81586662 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAG-TCCGAAGGCATTTGTGCGAGATACTAAA
* *
81586703 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGA-ATTATTAAA
1 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGA-TACTAAA
* * *
81586743 TCCGGGTTATGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGATACTAAA
* * *
81586782 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGT-CCGAAGGCATTTG
81586808 AACGAGGAGC
Statistics
Matches: 157, Mismatches: 19, Indels: 18
0.81 0.10 0.09
Matches are distributed among these distances:
39 35 0.22
40 108 0.69
41 13 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:81586720 original size:80 final size:79
Alignment explanation
Indices: 81586583--81586807 Score: 242
Period size: 80 Copynumber: 2.8 Consensus size: 79
81586573 TTGAATGCTG
* * * *
81586583 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGACTATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGA-T-ACTAAATCCGGGCTAAG-TCCCGAAGGCAT
81586646 TTGTGCGAGA-TA-CAAA
63 TTGTGCGA-ATTATCAAA
* *
81586662 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 -TCCGGGTTAAGTCCCGAAGG-CTTTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATT
* *
81586727 CGTGCGAATTATTAAA
64 TGTGCGAATTATCAAA
* * * * * *
81586743 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
81586808 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 11
0.81 0.11 0.07
Matches are distributed among these distances:
79 40 0.33
80 69 0.56
81 13 0.11
82 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAATTATCAAA
Found at i:81594295 original size:43 final size:43
Alignment explanation
Indices: 81594231--81594324 Score: 116
Period size: 43 Copynumber: 2.2 Consensus size: 43
81594221 TCTTATTCGA
* * *
81594231 AATCAAATAACGATGCCAATGTCCCAAAAATGATTTTACACGT
1 AATCACATAACGATGCCAATGTCCCAAAAATGATCTTACACAT
* * * * *
81594274 AATCACATAATGATGTCAATGTCCCAGACATGGTCTTACACAT
1 AATCACATAACGATGCCAATGTCCCAAAAATGATCTTACACAT
81594317 AATCACAT
1 AATCACAT
81594325 CTCATTAATC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27
Consensus pattern (43 bp):
AATCACATAACGATGCCAATGTCCCAAAAATGATCTTACACAT
Found at i:81598895 original size:126 final size:126
Alignment explanation
Indices: 81598670--81598924 Score: 402
Period size: 126 Copynumber: 2.0 Consensus size: 126
81598660 TTATAGCCTC
* * * *
81598670 ATTTTTCTACGAACTACTGTAGTAAAAGAGCGTCCACGTGGGAGCTTTTTTTAAAAATTTTGCTA
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCATCCACGTGAGAGCTTTTTTCAAAAATTTTGCTA
* * * *
81598735 ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTTAGAAACGTTTACTCAAAATT
66 ACAGTGCATCCTGCTTGAAACATTTTCGACACTATTTGTTCAGAAACGTCTACTCAAAATT
* *
81598796 ATTTTTCTACGAACTACTGTAGCAAAAGAGCATCCACGTGAGAGCTTTTTTCAGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCATCCACGTGAGAGCTTTTTTCAAAAATTTTGCTA
* *
81598861 ACAGTGCATCCTGCTTGAAACATTTTTGACACTATTTGTTCAGAAACGTCTACTTAAAATT
66 ACAGTGCATCCTGCTTGAAACATTTTCGACACTATTTGTTCAGAAACGTCTACTCAAAATT
81598922 ATT
1 ATT
81598925 CTTGCAGAAA
Statistics
Matches: 117, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
126 117 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.36
Consensus pattern (126 bp):
ATTTTTCTACGAACTACTGTAGCAAAAGAGCATCCACGTGAGAGCTTTTTTCAAAAATTTTGCTA
ACAGTGCATCCTGCTTGAAACATTTTCGACACTATTTGTTCAGAAACGTCTACTCAAAATT
Found at i:81599507 original size:16 final size:16
Alignment explanation
Indices: 81599486--81599516 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
81599476 ATAAATATAT
81599486 CCTAATTTAATCAATC
1 CCTAATTTAATCAATC
81599502 CCTAATTTAATCAAT
1 CCTAATTTAATCAAT
81599517 TAACCCTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39
Consensus pattern (16 bp):
CCTAATTTAATCAATC
Found at i:81599660 original size:21 final size:22
Alignment explanation
Indices: 81599618--81599664 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
81599608 CCTTAAATTA
*
81599618 TAAACCCTAAAAACCCTAACCC
1 TAAACCCTAAAAACCATAACCC
81599640 TAAACCCTAAAAACCAT-ACCC
1 TAAACCCTAAAAACCATAACCC
81599661 TAAA
1 TAAA
81599665 TCAATTAAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 8 0.33
22 16 0.67
ACGTcount: A:0.49, C:0.36, G:0.00, T:0.15
Consensus pattern (22 bp):
TAAACCCTAAAAACCATAACCC
Found at i:81601266 original size:26 final size:26
Alignment explanation
Indices: 81601230--81601279 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
81601220 AAAAGAGTAA
81601230 GCCTATTTTATGTGATTGAATAATGG
1 GCCTATTTTATGTGATTGAATAATGG
* *
81601256 GCCTGTTTTATGTGATTGAGTAAT
1 GCCTATTTTATGTGATTGAATAAT
81601280 AAAATGAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.08, G:0.24, T:0.44
Consensus pattern (26 bp):
GCCTATTTTATGTGATTGAATAATGG
Found at i:81601984 original size:28 final size:28
Alignment explanation
Indices: 81601908--81601984 Score: 91
Period size: 28 Copynumber: 2.8 Consensus size: 28
81601898 AACACAACAG
* **
81601908 GAAAGAATAAGCCTTAATGTTGAACTAT
1 GAAAGAATAAGCCTTTATGGCGAACTAT
* * *
81601936 GAAAGACTAAACGTTTATGGCGAACTAT
1 GAAAGAATAAGCCTTTATGGCGAACTAT
*
81601964 GAAAGAATAAGCCTTTGTGGC
1 GAAAGAATAAGCCTTTATGGC
81601985 AGACTCCATA
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.39, C:0.13, G:0.22, T:0.26
Consensus pattern (28 bp):
GAAAGAATAAGCCTTTATGGCGAACTAT
Found at i:81607683 original size:33 final size:35
Alignment explanation
Indices: 81607646--81607725 Score: 87
Period size: 34 Copynumber: 2.4 Consensus size: 35
81607636 CCTAAGCCCA
* *
81607646 TTCAGATAACAGTGATACTGGG-C-TAGAGCCC-TT
1 TTCAGATAACAGTGAAACTGGGCCTTAG-CCCCTTT
* *
81607679 TTCAGATTACA-TTAAACTGGGCCTTAGCCCCTTT
1 TTCAGATAACAGTGAAACTGGGCCTTAGCCCCTTT
81607713 TTCAGATAACAGT
1 TTCAGATAACAGT
81607726 ACAGTACGGC
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
32 8 0.21
33 14 0.37
34 15 0.39
35 1 0.03
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.31
Consensus pattern (35 bp):
TTCAGATAACAGTGAAACTGGGCCTTAGCCCCTTT
Found at i:81608070 original size:26 final size:26
Alignment explanation
Indices: 81608041--81608093 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
81608031 TCAAACATGC
81608041 ATTTAGGTCAATATA-CTCCTAGGGGT
1 ATTTAGGT-AATATATCTCCTAGGGGT
* * *
81608067 ATTTCGGTACTTTATCTCCTAGGGGT
1 ATTTAGGTAATATATCTCCTAGGGGT
81608093 A
1 A
81608094 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 4 0.17
26 19 0.83
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.38
Consensus pattern (26 bp):
ATTTAGGTAATATATCTCCTAGGGGT
Found at i:81609329 original size:24 final size:24
Alignment explanation
Indices: 81609287--81609392 Score: 140
Period size: 24 Copynumber: 4.4 Consensus size: 24
81609277 GCCGGCCAAC
*
81609287 TCCTGCTCCTTGATCAGCTCCTAAA
1 TCCT-CTCCTTTATCAGCTCCTAAA
* * *
81609312 TCTTCTCCTTTATTAGCTCTTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
81609336 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
81609360 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
81609384 TCTTCTCCT
1 TCCTCTCCT
81609393 GACAGCCTTT
Statistics
Matches: 71, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
24 68 0.96
25 3 0.04
ACGTcount: A:0.19, C:0.37, G:0.06, T:0.39
Consensus pattern (24 bp):
TCCTCTCCTTTATCAGCTCCTAAA
Found at i:81612413 original size:40 final size:40
Alignment explanation
Indices: 81612355--81612523 Score: 241
Period size: 40 Copynumber: 4.2 Consensus size: 40
81612345 CGGGATTTAA
* * * *
81612355 CCGGATATAGCAAATCGCACAAATGGCTTTGGAACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGC
81612395 CCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGC
* *
81612435 CCGGATATAGTAACCCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGC
* *
81612475 CCGGATATAGTCACTAGCACAAAATGCCTTTGGGTA-TTAGC
1 CCGGATATAGTAACTCGCAC-AAATGCCTTTGGG-ACTTAGC
81612516 CCGGATAT
1 CCGGATAT
81612524 CATCCGAATA
Statistics
Matches: 117, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
40 91 0.78
41 25 0.21
42 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGC
Found at i:81619246 original size:26 final size:26
Alignment explanation
Indices: 81619217--81619269 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
81619207 TCAAACATGC
*
81619217 ATTTAGGTCAATTTA-CTCCTCGGGGT
1 ATTTAGGT-AATTTATCTCCTAGGGGT
* *
81619243 ATTTCGGTACTTTATCTCCTAGGGGT
1 ATTTAGGTAATTTATCTCCTAGGGGT
81619269 A
1 A
81619270 AAACTATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.40
Consensus pattern (26 bp):
ATTTAGGTAATTTATCTCCTAGGGGT
Found at i:81620560 original size:24 final size:24
Alignment explanation
Indices: 81620533--81620593 Score: 86
Period size: 24 Copynumber: 2.5 Consensus size: 24
81620523 CTTGATCATT
* **
81620533 TCCTAAATATTCTCTTTTATCAGC
1 TCCTAAATCTTCTCCCTTATCAGC
*
81620557 TCCTAAATCCTCTCCCTTATCAGC
1 TCCTAAATCTTCTCCCTTATCAGC
81620581 TCCTAAATCTTCT
1 TCCTAAATCTTCT
81620594 ACTGACAGCC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.23, C:0.33, G:0.03, T:0.41
Consensus pattern (24 bp):
TCCTAAATCTTCTCCCTTATCAGC
Found at i:81623168 original size:27 final size:28
Alignment explanation
Indices: 81623084--81623181 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
81623074 CATGAGGTTG
* * * *
81623084 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
81623113 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
81623141 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
81623168 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
81623182 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:81623192 original size:27 final size:27
Alignment explanation
Indices: 81623112--81623194 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
81623102 TAAATTGTAC
* *
81623112 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
81623140 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
81623167 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
81623194 A
1 A
81623195 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:81623195 original size:29 final size:27
Alignment explanation
Indices: 81623084--81623195 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
81623074 CATGAGGTTG
** * *
81623084 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
81623113 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
81623141 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
81623168 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
81623196 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:81623418 original size:52 final size:52
Alignment explanation
Indices: 81623340--81623445 Score: 194
Period size: 52 Copynumber: 2.0 Consensus size: 52
81623330 TATGTGACAA
*
81623340 TTATAATTGAAGTCACGTACATAAGATTTATCGTGGAATAGGTGAAAGGTCG
1 TTATAATTGAAGTCACGTACATAAGATTTATCGTGGAATAGGTGAAAGGCCG
*
81623392 TTATACTTGAAGTCACGTACATAAGATTTATCGTGGAATAGGTGAAAGGCCG
1 TTATAATTGAAGTCACGTACATAAGATTTATCGTGGAATAGGTGAAAGGCCG
81623444 TT
1 TT
81623446 TAGTTGTATG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.33, C:0.11, G:0.25, T:0.31
Consensus pattern (52 bp):
TTATAATTGAAGTCACGTACATAAGATTTATCGTGGAATAGGTGAAAGGCCG
Found at i:81632778 original size:50 final size:50
Alignment explanation
Indices: 81632703--81632804 Score: 195
Period size: 50 Copynumber: 2.0 Consensus size: 50
81632693 TTCTGGTTAA
81632703 GAGAGGTTAGCTTCTTGGGTCACGTGGTATCCGCATCAGCTATTCGAGTT
1 GAGAGGTTAGCTTCTTGGGTCACGTGGTATCCGCATCAGCTATTCGAGTT
*
81632753 GAGAGGTTAGCTTCTTGGGTCACGTGGTATCCGCATCAGGTATTCGAGTT
1 GAGAGGTTAGCTTCTTGGGTCACGTGGTATCCGCATCAGCTATTCGAGTT
81632803 GA
1 GA
81632805 CCCGAACAAA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.19, C:0.19, G:0.31, T:0.31
Consensus pattern (50 bp):
GAGAGGTTAGCTTCTTGGGTCACGTGGTATCCGCATCAGCTATTCGAGTT
Found at i:81633090 original size:58 final size:58
Alignment explanation
Indices: 81633000--81633115 Score: 232
Period size: 58 Copynumber: 2.0 Consensus size: 58
81632990 GTTTCGATCA
81633000 ACTGAAAACTTATTTGACTGAAGCTCCAATTTTAGTGCAACCCGAATCAGGCAAAGAG
1 ACTGAAAACTTATTTGACTGAAGCTCCAATTTTAGTGCAACCCGAATCAGGCAAAGAG
81633058 ACTGAAAACTTATTTGACTGAAGCTCCAATTTTAGTGCAACCCGAATCAGGCAAAGAG
1 ACTGAAAACTTATTTGACTGAAGCTCCAATTTTAGTGCAACCCGAATCAGGCAAAGAG
81633116 TTTGTCATTT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (58 bp):
ACTGAAAACTTATTTGACTGAAGCTCCAATTTTAGTGCAACCCGAATCAGGCAAAGAG
Found at i:81638826 original size:40 final size:40
Alignment explanation
Indices: 81638740--81638964 Score: 237
Period size: 40 Copynumber: 5.7 Consensus size: 40
81638730 TTGAATGATG
* * * * *
81638740 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
81638780 TTCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
81638820 TCCGGACTCAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* **
81638860 TTCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
81638900 TCCAGG-TTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAA
1 TCC-GGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
81638941 -CCGG-CTATGTCCCGAAGACATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
81638965 AACGTGTAGC
Statistics
Matches: 163, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
39 20 0.12
40 131 0.80
41 12 0.07
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:81643226 original size:26 final size:26
Alignment explanation
Indices: 81643196--81643258 Score: 90
Period size: 27 Copynumber: 2.4 Consensus size: 26
81643186 TCACACAAGT
*
81643196 TAGTCATTTACGCACGAGGGGCAAAA
1 TAGTCATTTACACACGAGGGGCAAAA
* *
81643222 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTT-ACACACGAGGGGCAAAA
81643249 TAGTCATTTA
1 TAGTCATTTA
81643259 TTTTACCCCA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
26 10 0.30
27 23 0.70
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (26 bp):
TAGTCATTTACACACGAGGGGCAAAA
Found at i:81643292 original size:27 final size:27
Alignment explanation
Indices: 81643279--81643507 Score: 269
Period size: 27 Copynumber: 8.5 Consensus size: 27
81643269 CAAGGATATC
81643279 TCGGTAATTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* * * * *
81643306 TCGATATTTCTACCTTATAAGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* * *
81643333 TCGGTAATTCTATCCTGCAGGGATATT
1 TCGGTAATTCTACCCTACAGGGGTATT
81643360 TCGGTAATTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
*** *
81643387 TTAATAATTCTACCCTATAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* * *
81643414 TCGATAATTCTACCCTACAAGGGAATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* *
81643441 TCAGTAATTCTACCTTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* *
81643468 TCAGTAATTCTACCCTATAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
**
81643495 TTAGTAATTCTAC
1 TCGGTAATTCTAC
81643508 GACTTATCCA
Statistics
Matches: 169, Mismatches: 33, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 169 1.00
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (27 bp):
TCGGTAATTCTACCCTACAGGGGTATT
Found at i:81643411 original size:81 final size:82
Alignment explanation
Indices: 81643262--81643507 Score: 336
Period size: 81 Copynumber: 3.0 Consensus size: 82
81643252 TCATTTATTT
* * * * * *
81643262 TACCCCACAA-GGATATCTCGGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACCTTATAA
1 TACCCTACAAGGGATATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTATAG
81643326 GGGTATTTCGGTAATTC
66 GGGTATTTCGGTAATTC
* * *
81643343 TATCCTGC-AGGGATATTTCGGTAATTCTACCCTACAGGGGTATTTTAATAATTCTACCCTATAG
1 TACCCTACAAGGGATATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTATAG
*
81643407 GGGTATTTCGATAATTC
66 GGGTATTTCGGTAATTC
* * *
81643424 TACCCTACAAGGGA-ATTTCAGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTATAG
1 TACCCTACAAGGGATATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTATAG
**
81643488 GGGTATTTTAGTAATTC
66 GGGTATTTCGGTAATTC
81643505 TAC
1 TAC
81643508 GACTTATCCA
Statistics
Matches: 144, Mismatches: 19, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
80 1 0.01
81 138 0.96
82 5 0.03
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (82 bp):
TACCCTACAAGGGATATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTATAG
GGGTATTTCGGTAATTC
Found at i:81645404 original size:86 final size:85
Alignment explanation
Indices: 81645279--81645436 Score: 196
Period size: 85 Copynumber: 1.8 Consensus size: 85
81645269 TGTGTTATCA
* *
81645279 TGTAAGACCACGTCTGGGATGTTGGCATCGACTTGTGATTTACATGTAATACCATGTCTAGGACA
1 TGTAAGACCACGTCTGGGATGTTGGCATCGACTTGTGA-TTACATGTAAGACCACGTCTAGGACA
*
81645344 TTGGCATCATATATGATTTCG
65 CTGGCATCATATATGATTTCG
* * *
81645365 TGTAAGACC-CTGTTTGGGATAG-TGGCATCGA-TATTTGATTACATGTAAGACCACGTCTGGGA
1 TGTAAGACCAC-GTCTGGGAT-GTTGGCATCGACT-TGTGATTACATGTAAGACCACGTCTAGGA
*
81645427 CGCTGGCATC
63 CACTGGCATC
81645437 GTATGAGCTT
Statistics
Matches: 62, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
85 31 0.50
86 30 0.48
87 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (85 bp):
TGTAAGACCACGTCTGGGATGTTGGCATCGACTTGTGATTACATGTAAGACCACGTCTAGGACAC
TGGCATCATATATGATTTCG
Found at i:81645434 original size:43 final size:43
Alignment explanation
Indices: 81645264--81645441 Score: 161
Period size: 43 Copynumber: 4.2 Consensus size: 43
81645254 CATAGGATTC
*
81645264 CGATATGTG-TTATCATGTAAGACCACGTCTGGGATGTTGGCAT
1 CGATATGTGATTA-CATGTAAGACCACGTCTGGGACGTTGGCAT
* * * *
81645307 CGACT-TGTGATTTACATGTAATACCATGTCTAGGACATTGGCAT
1 CGA-TATGTGA-TTACATGTAAGACCACGTCTGGGACGTTGGCAT
* * * * *
81645351 C-ATATATGATTTCGTGTAAGACC-CTGTTTGGGATAG-TGGCAT
1 CGATATGTGATTACATGTAAGACCAC-GTCTGGGA-CGTTGGCAT
* *
81645393 CGATATTTGATTACATGTAAGACCACGTCTGGGACGCTGGCAT
1 CGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
81645436 CG-TATG
1 CGATATG
81645442 AGCTTATGAG
Statistics
Matches: 106, Mismatches: 20, Indels: 19
0.73 0.14 0.13
Matches are distributed among these distances:
42 29 0.27
43 46 0.43
44 28 0.26
45 3 0.03
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (43 bp):
CGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:81675136 original size:28 final size:28
Alignment explanation
Indices: 81675073--81675223 Score: 232
Period size: 28 Copynumber: 5.4 Consensus size: 28
81675063 ATATTAAGTC
*
81675073 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
81675100 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
81675128 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
81675156 CGCATACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
81675184 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
81675213 CGCACACTTAG
1 CGCACACTTAG
81675224 CGCCAATCTC
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 22 0.19
28 77 0.67
29 16 0.14
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:81687590 original size:31 final size:31
Alignment explanation
Indices: 81687550--81687757 Score: 310
Period size: 31 Copynumber: 6.7 Consensus size: 31
81687540 TTAGTCTTGA
*
81687550 CATAT-ACTAGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
* * *
81687580 CATATCACTAGGCTGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
* * *
81687611 CATTTCACTGGGCCGAAACCGTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
*
81687642 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
*
81687673 CATATCACTGGGCCGAAGCCGTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
* *
81687704 CATATCACTGGGCCGAAGCCTTTTCATAGAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
81687735 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
81687758 ACTGTAAACG
Statistics
Matches: 160, Mismatches: 17, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
30 5 0.03
31 155 0.97
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTCCATAAAT
Found at i:81688006 original size:25 final size:25
Alignment explanation
Indices: 81687965--81688048 Score: 102
Period size: 25 Copynumber: 3.4 Consensus size: 25
81687955 CTGGAGGCCT
81687965 AGCCTCTTTTAA-T-AACTGGGGCAA
1 AGCC-CTTTTAAGTAAACTGGGGCAA
*
81687989 AGCCCTTTCTGA-TAAACTGGGGCAA
1 AGCCCTTT-TAAGTAAACTGGGGCAA
**
81688014 AGCCCTTTTAAGTAAACTGGGGCGG
1 AGCCCTTTTAAGTAAACTGGGGCAA
81688039 AGCCCTTTTA
1 AGCCCTTTTA
81688049 GCACTTCCTC
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
23 4 0.08
24 9 0.17
25 40 0.75
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (25 bp):
AGCCCTTTTAAGTAAACTGGGGCAA
Found at i:81717940 original size:87 final size:88
Alignment explanation
Indices: 81717743--81717984 Score: 337
Period size: 87 Copynumber: 2.8 Consensus size: 88
81717733 TAAACATACA
* ** * ** *
81717743 TTTTCATATTTGATGGTCATCACCATCCCTTTTCATATTCGACGGTCGAAACCATCCCTTTTCAT
1 TTTTCATAGTTGATGGTTGTCACCATCCCTTTTCATAGTCGATAGTCGAAACTATCCCTTTTCAT
* *
81717808 -TAATCGATGGTCGTTACAATCCC
66 AT-ATCGATGGCCGTCACAATCCC
* *
81717831 TTTTCATAGTTGATGGTTGTCACCATCCCTTTTTATAGTCTATAGTCGAAACTATCCCTTTTCAT
1 TTTTCATAGTTGATGGTTGTCACCATCCCTTTTCATAGTCGATAGTCGAAACTATCCCTTTTCAT
*
81717896 ATA-CGATGGCCGTCACCATCCC
66 ATATCGATGGCCGTCACAATCCC
*
81717918 TTTTCATAGTTGATGGTTGTCACCATCCCTTTTCATAGTCGATAGTCGAAACTATCCGTTTTC-T
1 TTTTCATAGTTGATGGTTGTCACCATCCCTTTTCATAGTCGATAGTCGAAACTATCCCTTTTCAT
81717982 ATA
66 ATA
81717985 ATTGATGCTT
Statistics
Matches: 138, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
86 4 0.03
87 76 0.55
88 57 0.41
89 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.14, T:0.39
Consensus pattern (88 bp):
TTTTCATAGTTGATGGTTGTCACCATCCCTTTTCATAGTCGATAGTCGAAACTATCCCTTTTCAT
ATATCGATGGCCGTCACAATCCC
Found at i:81717974 original size:29 final size:29
Alignment explanation
Indices: 81717724--81717980 Score: 210
Period size: 29 Copynumber: 8.8 Consensus size: 29
81717714 GTGTGCTAAA
* * * * *
81717724 CGATGTTCGTAAACATACATTTTCATATT
1 CGATGGTCGTAACCATCCCTTTTCATAGT
* * * *
81717753 TGATGGTCATCACCATCCCTTTTCATATT
1 CGATGGTCGTAACCATCCCTTTTCATAGT
* * *
81717782 CGACGGTCGAAACCATCCCTTTTCATTAAT
1 CGATGGTCGTAACCATCCCTTTTCA-TAGT
* *
81717812 CGATGGTCGTTACAATCCCTTTTCATAGT
1 CGATGGTCGTAACCATCCCTTTTCATAGT
* * * *
81717841 TGATGGTTGTCACCATCCCTTTTTATAGT
1 CGATGGTCGTAACCATCCCTTTTCATAGT
* * * *
81717870 CTATAGTCGAAACTATCCCTTTTCATA-T
1 CGATGGTCGTAACCATCCCTTTTCATAGT
* *
81717898 ACGATGGCCGTCACCATCCCTTTTCATAGT
1 -CGATGGTCGTAACCATCCCTTTTCATAGT
* * *
81717928 TGATGGTTGTCACCATCCCTTTTCATAGT
1 CGATGGTCGTAACCATCCCTTTTCATAGT
* * * *
81717957 CGATAGTCGAAACTATCCGTTTTC
1 CGATGGTCGTAACCATCCCTTTTC
81717981 TATAATTGAT
Statistics
Matches: 178, Mismatches: 47, Indels: 6
0.77 0.20 0.03
Matches are distributed among these distances:
28 1 0.01
29 152 0.85
30 25 0.14
ACGTcount: A:0.23, C:0.25, G:0.14, T:0.38
Consensus pattern (29 bp):
CGATGGTCGTAACCATCCCTTTTCATAGT
Found at i:81734835 original size:43 final size:43
Alignment explanation
Indices: 81734686--81734842 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 43
81734676 TGTATTTTCA
* * *
81734686 TGTAAGACCACGTCTGGGACGTTGGCATCGACT-TATGATTTATG
1 TGTAAGACCACGTCTGGGACATTGGCATCGA-TATTTG-TTTACG
*
81734730 TGTAAGACCACGTCTGGGACATTGGCATC-ATATTT-TATTTCG
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGT-TTACG
* * * *
81734772 TGTAAGACC-CTGTCTAGGACAATGCCATCGATATTTGTTTACA
1 TGTAAGACCAC-GTCTGGGACATTGGCATCGATATTTGTTTACG
*
81734815 TATAAGACCACGTCTGGGACATTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
81734843 TGTATGAGCT
Statistics
Matches: 94, Mismatches: 13, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
41 2 0.02
42 28 0.30
43 34 0.36
44 30 0.32
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGTTTACG
Found at i:81742618 original size:46 final size:46
Alignment explanation
Indices: 81742482--81742608 Score: 209
Period size: 46 Copynumber: 2.8 Consensus size: 46
81742472 TATATATACA
** * * *
81742482 CATCTCATACATATCTCACATTAACCATTCGGCTTTACCTCATATC
1 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
81742528 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
81742574 CATCTCATACACGTTTCGCATTAGCCATTCGGCTT
1 CATCTCATACACGTTTCGCATTAGCCATTCGGCTT
81742609 CGCCACATAT
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.24, C:0.32, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
Found at i:81742661 original size:22 final size:22
Alignment explanation
Indices: 81742635--81742757 Score: 65
Period size: 23 Copynumber: 5.3 Consensus size: 22
81742625 TTCCACGTTC
81742635 ATCACATTGGCCATTCTACCTT
1 ATCACATTGGCCATTCTACCTT
* *
81742657 ATCACATATATG-CATGT-TCACATT
1 ATCACAT-T-GGCCAT-TCT-ACCTT
**
81742681 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCTACCTT
* *
81742704 ATCACACATAT-GCAAGTTC-ACATT
1 AT--CACAT-TGGCCA-TTCTACCTT
*
81742728 CATCACATTGGCCATTCTGCCTT
1 -ATCACATTGGCCATTCTACCTT
81742751 ATCACAT
1 ATCACAT
81742758 ATATGCAAGT
Statistics
Matches: 75, Mismatches: 12, Indels: 28
0.65 0.10 0.24
Matches are distributed among these distances:
22 20 0.27
23 21 0.28
24 21 0.28
25 13 0.17
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCTACCTT
Found at i:81742663 original size:47 final size:47
Alignment explanation
Indices: 81742632--81743154 Score: 884
Period size: 47 Copynumber: 11.1 Consensus size: 47
81742622 CACTTCCACG
**
81742632 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
81742679 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
81742726 TTCATCACATTGGCCATTCTGCCTTATCACATATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * * * *
81742773 TTCATCGCATTGGTCATTCAGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
81742820 TTCATCGCATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
81742867 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
81742914 TTCATCACATTGGCCATTCGGCCTTATCACATATATGTATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * *
81742961 TTCATCACATTGGCCATTCAGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
81743008 TCCATCACATTGGCCATTTGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
81743055 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
81743102 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
81743149 TTCATC
1 TTCATC
81743155 TCATAAAATC
Statistics
Matches: 449, Mismatches: 27, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 449 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:81742898 original size:22 final size:22
Alignment explanation
Indices: 81742827--81742945 Score: 66
Period size: 22 Copynumber: 5.1 Consensus size: 22
81742817 ACATTCATCG
81742827 CATTGGCCATTCGGCCTTATCA
1 CATTGGCCATTCGGCCTTATCA
* * *
81742849 CATATATG-CATGTTC-ACATTCATCA
1 CAT-T-GGCCA--TTCGGCCTT-ATCA
81742874 CATTGGCCATTCGGCCTTATCA
1 CATTGGCCATTCGGCCTTATCA
* * *
81742896 CATATATG-CATGTTC-ACATTCATCA
1 CAT-T-GGCCA--TTCGGCCTT-ATCA
81742921 CATTGGCCATTCGGCCTTATCA
1 CATTGGCCATTCGGCCTTATCA
81742943 CAT
1 CAT
81742946 ATATGTATGT
Statistics
Matches: 71, Mismatches: 12, Indels: 28
0.64 0.11 0.25
Matches are distributed among these distances:
22 23 0.32
23 14 0.20
24 14 0.20
25 20 0.28
ACGTcount: A:0.24, C:0.29, G:0.13, T:0.34
Consensus pattern (22 bp):
CATTGGCCATTCGGCCTTATCA
Found at i:81746571 original size:26 final size:26
Alignment explanation
Indices: 81746519--81746572 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
81746509 ATGTGGCGTC
* **
81746519 GACACGGTGTTGAAGAGCCTATGTGG
1 GACACAGTGTTGAAGAGCCTACATGG
*
81746545 GACACAGTGTTGAAGAGGCTACATGG
1 GACACAGTGTTGAAGAGCCTACATGG
81746571 GA
1 GA
81746573 GCCTACGGAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.15, G:0.37, T:0.20
Consensus pattern (26 bp):
GACACAGTGTTGAAGAGCCTACATGG
Found at i:81747983 original size:43 final size:42
Alignment explanation
Indices: 81747877--81748004 Score: 163
Period size: 42 Copynumber: 3.0 Consensus size: 42
81747867 ACATAGGATC
*
81747877 CGATATGTGTTTTCATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATTTG-TTTCATGTAAGACCACGTCTGGGACGTTGGCAT
*
81747920 CG-TATTTGATTTCATGTAAGACC-CTGTCTTGGACAG-TGGCAT
1 CGATATTTG-TTTCATGTAAGACCAC-GTCTGGGAC-GTTGGCAT
*
81747962 CGATATTTGTTTACATGTAAGACCACGTCTGAGACGTTGGCAT
1 CGATATTTGTTT-CATGTAAGACCACGTCTGGGACGTTGGCAT
81748005 TGTATGAGCT
Statistics
Matches: 74, Mismatches: 5, Indels: 12
0.81 0.05 0.13
Matches are distributed among these distances:
41 1 0.01
42 39 0.53
43 33 0.45
44 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.34
Consensus pattern (42 bp):
CGATATTTGTTTCATGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:81750174 original size:54 final size:54
Alignment explanation
Indices: 81750100--81750299 Score: 240
Period size: 54 Copynumber: 3.7 Consensus size: 54
81750090 ATTACTGAAA
** * **
81750100 TACCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAATTATCATTT
* *** *
81750154 CACCCTCGATTTACAAAATTATTGTTTTACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAATTATCATTT
* * * *
81750208 TAACCTCGATTTACAGAATTACCATTTTACTCTCGATTTATAAAATTATCATTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAATTATCATTT
* *
81750262 TACCCTC-AGTTTACAAAATTACCGTTTTACCCTTGATT
1 TACCCTCGA-TTTACAAAATTACCATTTTACCCTCGATT
81750300 GTGAAATTAC
Statistics
Matches: 121, Mismatches: 24, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
53 1 0.01
54 120 0.99
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAATTATCATTT
Found at i:81750188 original size:81 final size:81
Alignment explanation
Indices: 81750100--81750299 Score: 249
Period size: 81 Copynumber: 2.5 Consensus size: 81
81750090 ATTACTGAAA
* * ***
81750100 TACCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTATTGTTTCACCCTCGATT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTCACCCTCGATT
**
81750165 TACAAAATTATTGTTT
66 TACAAAATTATCATTT
* * *
81750181 TACCCTCGATTTATAGAATTACCATTTTAACCTCGATTTACAGAATTACCATTTTACTCTCGATT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTCACCCTCGATT
*
81750246 TATAAAATTATCATTT
66 TACAAAATTATCATTT
* * * *
81750262 TACCCTC-AGTTTACAAAATTACCGTTTTACCCTTGATT
1 TACCCTCGA-TTTATAGAATTACCATTTTACCCTCGATT
81750300 GTGAAATTAC
Statistics
Matches: 102, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
80 1 0.01
81 101 0.99
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTCACCCTCGATT
TACAAAATTATCATTT
Found at i:81750260 original size:27 final size:27
Alignment explanation
Indices: 81750100--81750299 Score: 213
Period size: 27 Copynumber: 7.4 Consensus size: 27
81750090 ATTACTGAAA
*
81750100 TACCCTCGATTTGTAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
***
81750127 TACCCTCGATTTATAGAATTATTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* * * ***
81750154 CACCCTCGATTTACAAAATTATTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
81750181 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
81750208 TAACCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
81750235 TACTCTCGATTTATAAAATTATCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
81750262 TACCCTC-AGTTTACAAAATTACCGTTT
1 TACCCTCGA-TTTATAGAATTACCATTT
*
81750289 TACCCTTGATT
1 TACCCTCGATT
81750300 GTGAAATTAC
Statistics
Matches: 146, Mismatches: 25, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 144 0.99
28 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:81750334 original size:27 final size:27
Alignment explanation
Indices: 81750303--81750457 Score: 134
Period size: 27 Copynumber: 5.7 Consensus size: 27
81750293 CTTGATTGTG
*
81750303 AAATTACTAAAATACCCCTA-TAGGATA
1 AAATTACCAAAATACCCCTAGTAGG-TA
* **
81750330 GAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTAGGTA
**
81750357 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTAGGTA
* * ** *
81750384 AAATTACCGAAATACCACTAGTTTGTG
1 AAATTACCAAAATACCCCTAGTAGGTA
* * **
81750411 AAATTACCGAAATA-CCCTCAATTTGTA
1 AAATTACCAAAATACCCCT-AGTAGGTA
*
81750438 AAATTACCAAAATACTCCTA
1 AAATTACCAAAATACCCCTA
81750458 ATTTAAAAAA
Statistics
Matches: 112, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
26 3 0.03
27 104 0.93
28 5 0.04
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.28
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTAGGTA
Found at i:81750372 original size:54 final size:53
Alignment explanation
Indices: 81750298--81750481 Score: 197
Period size: 54 Copynumber: 3.4 Consensus size: 53
81750288 TTACCCTTGA
* * ** *
81750298 TTGTGAAATTACTAAAATACCCCTATAGGATAGAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTATTTG-TAAAATTACCAAAATACCCCTAGT
* *
81750352 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAATACCACTAGT
1 TTGTAAAATTACCAAAATACCCCTA-TTTGTAAAATTACCAAAATACCCCTAGT
* * * * *
81750406 TTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACTCCTAAT
1 TTGTAAAATTACCAAAATACCC-CTATTTGTAAAATTACCAAAATACCCCTAGT
** **
81750460 TTAAAAAATTATAAAAATACCC
1 TTGTAAAATTACCAAAATACCC
81750482 TTGACTTTCT
Statistics
Matches: 108, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
54 104 0.96
55 4 0.04
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.29
Consensus pattern (53 bp):
TTGTAAAATTACCAAAATACCCCTATTTGTAAAATTACCAAAATACCCCTAGT
Found at i:81750460 original size:27 final size:26
Alignment explanation
Indices: 81750331--81750482 Score: 178
Period size: 27 Copynumber: 5.7 Consensus size: 26
81750321 TATAGGATAG
81750331 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATA-CCCTAGTTTGTAA
81750358 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATA-CCCTAGTTTGTAA
* *
81750385 AATTACCGAAATACCACTAGTTTGTGA
1 AATTACCAAAATACC-CTAGTTTGTAA
* *
81750412 AATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCT-AGTTTGTAA
* **
81750439 AATTACCAAAATACTCCTAATTTAAAA
1 AATTACCAAAATAC-CCTAGTTTGTAA
**
81750466 AATTATAAAAATACCCT
1 AATTACCAAAATACCCT
81750483 TGACTTTCTA
Statistics
Matches: 113, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
26 7 0.06
27 103 0.91
28 3 0.03
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.30
Consensus pattern (26 bp):
AATTACCAAAATACCCTAGTTTGTAA
Found at i:81750478 original size:81 final size:81
Alignment explanation
Indices: 81750331--81750480 Score: 203
Period size: 81 Copynumber: 1.9 Consensus size: 81
81750321 TATAGGATAG
* * ** **
81750331 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAA
1 AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTAATTTAAAAAATTACAAAAA
81750396 TACCACTAGTTTGTGA
66 TACCACTAGTTTGTGA
* * *
81750412 AATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAATACTCCTAATTTAAAAAATTATAAAA
1 AATTACCAAAATACCCCT-AATTTGTAAAATTACCAAAATACCCCTAATTTAAAAAATTACAAAA
81750476 ATACC
65 ATACC
81750481 CTTGACTTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
80 4 0.07
81 55 0.93
ACGTcount: A:0.44, C:0.20, G:0.07, T:0.29
Consensus pattern (81 bp):
AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTAATTTAAAAAATTACAAAAA
TACCACTAGTTTGTGA
Found at i:81750532 original size:27 final size:27
Alignment explanation
Indices: 81750493--81750544 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
81750483 TGACTTTCTA
81750493 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
81750520 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
81750545 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:81750674 original size:27 final size:28
Alignment explanation
Indices: 81750602--81750675 Score: 84
Period size: 27 Copynumber: 2.8 Consensus size: 28
81750592 CTAATAGGTA
*
81750602 AAAAAGACCGTAA-AGCCCTTGTAGGGT
1 AAAATGACCGTAATAGCCCTTGTAGGGT
* *
81750629 AAAGTGACCGTAATA-CCCTTGTATGGT
1 AAAATGACCGTAATAGCCCTTGTAGGGT
81750656 AAAATGA-CG-AATATGCCCTT
1 AAAATGACCGTAATA-GCCCTT
81750676 ATGTTCCGTA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
25 4 0.10
26 2 0.05
27 33 0.82
28 1 0.03
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (28 bp):
AAAATGACCGTAATAGCCCTTGTAGGGT
Found at i:81751555 original size:24 final size:25
Alignment explanation
Indices: 81751473--81751542 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
81751463 AGGAAGTGCT
* *
81751473 AAAAGGGCTCTGCCCCAGTTTA-CCG
1 AAAA-GGCTTTGCCCCAGTTTATCAG
*
81751498 AAAAGGTTTTTGCCCCAGTTTATCAG
1 AAAAGG-CTTTGCCCCAGTTTATCAG
81751524 AAAAGGCTTTGCCCCAGTT
1 AAAAGGCTTTGCCCCAGTT
81751543 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
24 2 0.05
25 29 0.74
26 8 0.21
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (25 bp):
AAAAGGCTTTGCCCCAGTTTATCAG
Found at i:81751749 original size:42 final size:42
Alignment explanation
Indices: 81751690--81751780 Score: 155
Period size: 42 Copynumber: 2.2 Consensus size: 42
81751680 TTGTCTCCCC
* * *
81751690 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGATTGCATACATCCATTGACATTACATGTGATATTA
81751732 AAATGGGATTGCATACATCCATTGACATTACATGTGATATTA
1 AAATGGGATTGCATACATCCATTGACATTACATGTGATATTA
81751774 AAATGGG
1 AAATGGG
81751781 CCTAAGGGCC
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.33
Consensus pattern (42 bp):
AAATGGGATTGCATACATCCATTGACATTACATGTGATATTA
Found at i:81754567 original size:19 final size:20
Alignment explanation
Indices: 81754537--81754576 Score: 73
Period size: 19 Copynumber: 2.0 Consensus size: 20
81754527 AAGTACATAG
81754537 GATTATTTTTTTTTGTGTAT
1 GATTATTTTTTTTTGTGTAT
81754557 GATTA-TTTTTTTTGTGTAT
1 GATTATTTTTTTTTGTGTAT
81754576 G
1 G
81754577 GATGTTTACT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.15, C:0.00, G:0.17, T:0.68
Consensus pattern (20 bp):
GATTATTTTTTTTTGTGTAT
Found at i:81754666 original size:30 final size:30
Alignment explanation
Indices: 81754630--81754690 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
81754620 GTTATTGTTT
81754630 TTTTTCATGGTGCTTAGATTATATTAATGA
1 TTTTTCATGGTGCTTAGATTATATTAATGA
*
81754660 TTTTTCATGGTGCTTGGATTATATTAATGA
1 TTTTTCATGGTGCTTAGATTATATTAATGA
81754690 T
1 T
81754691 GTGAATAATG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.25, C:0.07, G:0.18, T:0.51
Consensus pattern (30 bp):
TTTTTCATGGTGCTTAGATTATATTAATGA
Found at i:81762672 original size:17 final size:15
Alignment explanation
Indices: 81762625--81762672 Score: 60
Period size: 17 Copynumber: 2.9 Consensus size: 15
81762615 AGACATGTAG
81762625 AAATAAATATATTTAA
1 AAATAAATATA-TTAA
81762641 AAATAGAATATATTAA
1 AAATA-AATATATTAA
81762657 ATAATGAAATATATTA
1 A-AAT-AAATATATTA
81762673 TTTGAAATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
16 10 0.34
17 18 0.62
18 1 0.03
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.35
Consensus pattern (15 bp):
AAATAAATATATTAA
Found at i:81770192 original size:869 final size:869
Alignment explanation
Indices: 81768514--81770253 Score: 3282
Period size: 869 Copynumber: 2.0 Consensus size: 869
81768504 TACATCTTTA
* *
81768514 CCAAGACCATGGCAATTCAAGGAAAACTCTAGGCAGAGGTTGCTTAATAAGTTAGTCTTTTTTTT
1 CCAAGACCATGGCAATTCAAGGAAAACTCTAGGCAGAGGTTGCTTAATAAGTTAGTCTTCTTTTC
* * * ** * * * * * * *
81768579 ATAGATTTTTTTGTGATTTTTTTACGTTATTATTGTTGGAAGTGGAAAAATAACTGTATTGAGTA
66 AAACATCTTAATGTAAATATATAACGTCATCATTGTTGGAAGTGGAAAAATAACTGTATTGAGTA
81768644 CAATAAATGAAGAGTTAATTTGAGTTGGTAAATTTTAGTAATTAGTATCTGTTCAACTCTATTTT
131 CAATAAATGAAGAGTTAATTTGAGTTGGTAAATTTTAGTAATTAGTATCTGTTCAACTCTATTTT
* *
81768709 TGCTTTCGTCCTTAATGCTCTATTCTTATCTGCTAACTTTATGTCCTCAACTATCCACATCTCAA
196 TGCTTTCGTCCTTAATGCTCTATTCTTAGCTGCTAACTTTATGTCCACAACTATCCACATCTCAA
81768774 TTGTGTAATAGGCAGTAGGAGCCAAAATCTCACCATCAATAACTGTTTTCAAGGTTTAAAAGGGT
261 TTGTGTAATAGGCAGTAGGAGCCAAAATCTCACCATCAATAACTGTTTTCAAGGTTTAAAAGGGT
*
81768839 TTAGAGTTGGCATAATTGAAGTAGGGATATTTTGCACGGAATTTTATATGGAATCACAAACCATA
326 TTAGAGTTGGCATAATTGAAGTAGGGATATTTTCCACGGAATTTTATATGGAATCACAAACCATA
*
81768904 TGTAACTAAGACTCGGTATTTATAATTCCATTGTAGCTACATGCAACTCTACCCTTTCAGTCATT
391 TGTAACTAAGACTCGGTATTGATAATTCCATTGTAGCTACATGCAACTCTACCCTTTCAGTCATT
81768969 TAGATACTACCAAGGAACAAGCACTTGTATACATCAGGGGAAGTAGGAAAGAAAAAACAAGCTAA
456 TAGATACTACCAAGGAACAAGCACTTGTATACATCAGGGGAAGTAGGAAAGAAAAAACAAGCTAA
*
81769034 TCTTTTTAATATTTCCAAATAGATTAAAACAACAGATGATAAATATGGCATTTTGCTCCATAAGC
521 TCTTTTTAATATTTCCAAATAGATTAAAACAACAGATGATAAACATGGCATTTTGCTCCATAAGC
81769099 TTTTTACTTGCCCTGTCCGTCCCGCTGGGAGGCTAACATCCTAAACATGATATAACAGCAAACAT
586 TTTTTACTTGCCCTGTCCGTCCCGCTGGGAGGCTAACATCCTAAACATGATATAACAGCAAACAT
81769164 GTTACCGTGTTGTTTTTTCCCATTGTCTAGGAAGAAACGCTTTGATAGAATACATCTATACTGAG
651 GTTACCGTGTTGTTTTTTCCCATTGTCTAGGAAGAAACGCTTTGATAGAATACATCTATACTGAG
81769229 AGAAAAAGGGGGAAAATAAATAATTGATGAAAAGAGGTTGGGAAAAAGATAATTTAACTAGTCAA
716 AGAAAAAGGGGGAAAATAAATAATTGATGAAAAGAGGTTGGGAAAAAGATAATTTAACTAGTCAA
81769294 CATTATGGTTTACCATTGGGTTTTGGTGATTGATAAGGATATTGATGGTGATAGGGAGAAGCATG
781 CATTATGGTTTACCATTGGGTTTTGGTGATTGATAAGGATATTGATGGTGATAGGGAGAAGCATG
81769359 GGAACCATTTGGAATGGAAAGACT
846 GGAACCATTTGGAATGGAAAGACT
81769383 CCAAGACCATGGCAATTCAAGGAAAACTCTAGGCAGAGGTTGCTTAATAAGTTAGTCTTCTTTTC
1 CCAAGACCATGGCAATTCAAGGAAAACTCTAGGCAGAGGTTGCTTAATAAGTTAGTCTTCTTTTC
81769448 AAACATCTTAATGTAAATATATAACGTCATCATTGTTGGAAGTGGAAAAATAACTGTATTGAGTA
66 AAACATCTTAATGTAAATATATAACGTCATCATTGTTGGAAGTGGAAAAATAACTGTATTGAGTA
81769513 CAATAAATGAAGAGTTAATTTGAGTTGGTAAATTTTAGTAATTAGTATCTGTTCAACTCTATTTT
131 CAATAAATGAAGAGTTAATTTGAGTTGGTAAATTTTAGTAATTAGTATCTGTTCAACTCTATTTT
81769578 TGCTTTCGTCCTTAATGCTCTATTCTTAGCTGCTAACTTTATGTCCACAACTATCCACATCTCAA
196 TGCTTTCGTCCTTAATGCTCTATTCTTAGCTGCTAACTTTATGTCCACAACTATCCACATCTCAA
*
81769643 TTGTGTAATAGGCAGTAGGAGGCAAAATCTCACCATCAATAACTGTTTTCAAGGTTTAAAAGGGT
261 TTGTGTAATAGGCAGTAGGAGCCAAAATCTCACCATCAATAACTGTTTTCAAGGTTTAAAAGGGT
81769708 TTAGAGTTGGCATAATTGAAGTAGGGATATTTTCCACGGAATTTTATATGGAATCACAAACCATA
326 TTAGAGTTGGCATAATTGAAGTAGGGATATTTTCCACGGAATTTTATATGGAATCACAAACCATA
* *
81769773 TGTAATTAAGACTCGGTGTTGATAATTCCATTGTAGCTACATGCAACTCTACCCTTTCAGTCATT
391 TGTAACTAAGACTCGGTATTGATAATTCCATTGTAGCTACATGCAACTCTACCCTTTCAGTCATT
81769838 TAGATACTACCAAGGAACAAGCACTTGTATACATCAGGGGAAGTAGGAAAGAAAAAACAAGCTAA
456 TAGATACTACCAAGGAACAAGCACTTGTATACATCAGGGGAAGTAGGAAAGAAAAAACAAGCTAA
81769903 TCTTTTTAATATTTCCAAATAGATTAAAACAACAGATGATAAACATGGCATTTTGCTCCATAAGC
521 TCTTTTTAATATTTCCAAATAGATTAAAACAACAGATGATAAACATGGCATTTTGCTCCATAAGC
81769968 TTTTTACTTGCCCTGTCCGTCCCGCTGGGAGGCTAACATCCTAAACATGATATAACAGCAAACAT
586 TTTTTACTTGCCCTGTCCGTCCCGCTGGGAGGCTAACATCCTAAACATGATATAACAGCAAACAT
81770033 GTTACCGTGTTGTTTTTTCCCATTGTCTAGGAAGAAACGCTTTGATAGAATACATCTATACTGAG
651 GTTACCGTGTTGTTTTTTCCCATTGTCTAGGAAGAAACGCTTTGATAGAATACATCTATACTGAG
81770098 AGAAAAAGGGGGAAAATAAATAATTGATGAAAAGAGGTTGGGAAAAAGATAATTTAACTAGTCAA
716 AGAAAAAGGGGGAAAATAAATAATTGATGAAAAGAGGTTGGGAAAAAGATAATTTAACTAGTCAA
81770163 CATTATGGTTTACCATTGGGTTTTGGTGATTGATAAGGATATTGATGGTGATAGGGAGAAGCATG
781 CATTATGGTTTACCATTGGGTTTTGGTGATTGATAAGGATATTGATGGTGATAGGGAGAAGCATG
81770228 GGAACCATTTGGAATGGAAAGACT
846 GGAACCATTTGGAATGGAAAGACT
81770252 CC
1 CC
81770254 TGTGTCCATT
Statistics
Matches: 849, Mismatches: 22, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
869 849 1.00
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32
Consensus pattern (869 bp):
CCAAGACCATGGCAATTCAAGGAAAACTCTAGGCAGAGGTTGCTTAATAAGTTAGTCTTCTTTTC
AAACATCTTAATGTAAATATATAACGTCATCATTGTTGGAAGTGGAAAAATAACTGTATTGAGTA
CAATAAATGAAGAGTTAATTTGAGTTGGTAAATTTTAGTAATTAGTATCTGTTCAACTCTATTTT
TGCTTTCGTCCTTAATGCTCTATTCTTAGCTGCTAACTTTATGTCCACAACTATCCACATCTCAA
TTGTGTAATAGGCAGTAGGAGCCAAAATCTCACCATCAATAACTGTTTTCAAGGTTTAAAAGGGT
TTAGAGTTGGCATAATTGAAGTAGGGATATTTTCCACGGAATTTTATATGGAATCACAAACCATA
TGTAACTAAGACTCGGTATTGATAATTCCATTGTAGCTACATGCAACTCTACCCTTTCAGTCATT
TAGATACTACCAAGGAACAAGCACTTGTATACATCAGGGGAAGTAGGAAAGAAAAAACAAGCTAA
TCTTTTTAATATTTCCAAATAGATTAAAACAACAGATGATAAACATGGCATTTTGCTCCATAAGC
TTTTTACTTGCCCTGTCCGTCCCGCTGGGAGGCTAACATCCTAAACATGATATAACAGCAAACAT
GTTACCGTGTTGTTTTTTCCCATTGTCTAGGAAGAAACGCTTTGATAGAATACATCTATACTGAG
AGAAAAAGGGGGAAAATAAATAATTGATGAAAAGAGGTTGGGAAAAAGATAATTTAACTAGTCAA
CATTATGGTTTACCATTGGGTTTTGGTGATTGATAAGGATATTGATGGTGATAGGGAGAAGCATG
GGAACCATTTGGAATGGAAAGACT
Found at i:81773424 original size:20 final size:20
Alignment explanation
Indices: 81773399--81773439 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
81773389 AATGGAGTCA
81773399 AATTCTTTGGTCTTCACACT
1 AATTCTTTGGTCTTCACACT
81773419 AATTCTTTGGTCTTCACACT
1 AATTCTTTGGTCTTCACACT
81773439 A
1 A
81773440 TATCGCTATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.22, C:0.24, G:0.10, T:0.44
Consensus pattern (20 bp):
AATTCTTTGGTCTTCACACT
Found at i:81778421 original size:29 final size:29
Alignment explanation
Indices: 81778389--81778445 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 29
81778379 ACCACAAAGG
*
81778389 CTCTTTTCATA-AAGAATTAGCCAAAAACT
1 CTCTTTTCATACAAG-ATCAGCCAAAAACT
81778418 CTCTTTTCATATCAAGATCAGCCAAAAA
1 CTCTTTTCATA-CAAGATCAGCCAAAAA
81778446 GGCTCTTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 11 0.44
30 11 0.44
31 3 0.12
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (29 bp):
CTCTTTTCATACAAGATCAGCCAAAAACT
Found at i:81778477 original size:30 final size:29
Alignment explanation
Indices: 81778372--81778479 Score: 94
Period size: 30 Copynumber: 3.7 Consensus size: 29
81778362 CGCCTTTAAT
* * *
81778372 AGAATCAACCACAAAGGCTCTTTT-CATAA
1 AGAATCAGCCAAAAAGGCTCTTTTACAT-C
* ** *
81778401 AGAATTAGCCAAAAACTCTCTTTTCATATC
1 AGAATCAGCCAAAAAGGCTCTTTT-ACATC
81778431 A-AGATCAGCCAAAAAGGCTCTTCTTACATC
1 AGA-ATCAGCCAAAAAGGCTCTT-TTACATC
*
81778461 AGAATCAGCCACAAAGGCT
1 AGAATCAGCCAAAAAGGCT
81778480 TCTCTATGAT
Statistics
Matches: 62, Mismatches: 12, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
29 20 0.32
30 37 0.60
31 5 0.08
ACGTcount: A:0.39, C:0.25, G:0.12, T:0.24
Consensus pattern (29 bp):
AGAATCAGCCAAAAAGGCTCTTTTACATC
Found at i:81785036 original size:19 final size:19
Alignment explanation
Indices: 81785012--81785052 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
81785002 TATGTGCAAG
81785012 ATTCCGTGTATCCAATAGT
1 ATTCCGTGTATCCAATAGT
81785031 ATTCCGTGTATCCAATAGT
1 ATTCCGTGTATCCAATAGT
81785050 ATT
1 ATT
81785053 TCGAGTGTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.39
Consensus pattern (19 bp):
ATTCCGTGTATCCAATAGT
Found at i:81789932 original size:27 final size:26
Alignment explanation
Indices: 81789915--81789984 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
81789905 ATATTAAGTC
81789915 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
81789942 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
81789970 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
81789985 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:81789978 original size:28 final size:28
Alignment explanation
Indices: 81789915--81790012 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
81789905 ATATTAAGTC
*
81789915 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
81789942 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
81789970 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
81789999 CGCACACTTAGTGC
1 CGCACACTTAGTGC
81790013 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:81797018 original size:25 final size:25
Alignment explanation
Indices: 81796971--81797018 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
81796961 TTATAATATG
* * *
81796971 AAAATGACCATTTTTCCCTTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
81796996 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
81797019 GTTTAAATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.12, T:0.29
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:81798818 original size:79 final size:81
Alignment explanation
Indices: 81798682--81798866 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
81798672 TTGAATGATG
* *
81798682 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
81798746 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
81798761 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
81798823 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
81798841 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
81798867 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:81798880 original size:40 final size:40
Alignment explanation
Indices: 81798683--81798866 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
81798673 TGAATGATGT
* * * *
81798683 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
81798723 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
81798763 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
81798801 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
81798842 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
81798867 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:81798888 original size:79 final size:79
Alignment explanation
Indices: 81798735--81798889 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
81798725 GGACTAAGAT
* * **
81798735 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
81798800 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
81798814 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
*
81798877 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
81798890 ATTCTGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 39 0.59
80 25 0.38
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:81806397 original size:20 final size:20
Alignment explanation
Indices: 81806348--81806397 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
81806338 TTCGGGGTGT
*
81806348 TACACATGACATGTATGATA
1 TACACATGATATGTATGATA
81806368 TACACATGATATGTATGATA
1 TACACATGATATGTATGATA
*
81806388 TGCACATGAT
1 TACACATGAT
81806398 GTATTCATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.32
Consensus pattern (20 bp):
TACACATGATATGTATGATA
Found at i:81806505 original size:24 final size:24
Alignment explanation
Indices: 81806446--81806565 Score: 163
Period size: 24 Copynumber: 5.0 Consensus size: 24
81806436 GGAGGAAGTG
81806446 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
81806470 GATAAAGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
81806495 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
* *
81806519 TAAAATGGCTT-TGCCCCAATTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
81806542 TAAAAGAGGC-TAGGCCTCCAGTTA
1 TAAAAG-GGCTTATGCC-CCAGTTA
81806566 AATGATAAAG
Statistics
Matches: 85, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
23 17 0.20
24 39 0.46
25 29 0.34
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:81806518 original size:49 final size:48
Alignment explanation
Indices: 81806446--81806575 Score: 165
Period size: 49 Copynumber: 2.6 Consensus size: 48
81806436 GGAGGAAGTG
*
81806446 TAAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTT-TGCCCCAATTAT
* *
81806495 TAAAAGGGCTTATGCCCCAGTTATTA-AAATGGCTTTGCCCCAATTAT
1 TAAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTTGCCCCAATTAT
*
81806542 TAAAAGAGGC-TAGGCCTCCAGTTAAATGATAAAG
1 TAAAAG-GGCTTATGCC-CCAGTT--ATGATAAAG
81806576 CAGCTATGCT
Statistics
Matches: 70, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
47 22 0.31
48 17 0.24
49 25 0.36
50 3 0.04
51 3 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (48 bp):
TAAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTTGCCCCAATTAT
Found at i:81806795 original size:31 final size:31
Alignment explanation
Indices: 81806760--81806822 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
81806750 CGTTTACAGT
*
81806760 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATACGAAATATGA
**
81806791 AAAGGCTTCGGCCCAGTGTTACGAAATATGA
1 AAAGGCTTCGGCCCAGTAATACGAAATATGA
81806822 A
1 A
81806823 GTGTGAAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATACGAAATATGA
Found at i:81808138 original size:25 final size:25
Alignment explanation
Indices: 81808095--81808165 Score: 115
Period size: 25 Copynumber: 2.8 Consensus size: 25
81808085 GAGGAAGTGC
*
81808095 AAAAGGGCTTTTGCCCCAGTTTACCG
1 AAAAGGGC-TTTGCCCCAGTTTACCA
*
81808121 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
81808146 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
81808166 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
25 35 0.81
26 8 0.19
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:81808454 original size:31 final size:30
Alignment explanation
Indices: 81808386--81808463 Score: 95
Period size: 30 Copynumber: 2.6 Consensus size: 30
81808376 CATTTACTAT
* * *
81808386 AAAGGCTTCAGCCCAGTGATATGATAACGA
1 AAAGGCTTCGGCCCAGTGACAAGATAACGA
*
81808416 AAAGGCTTCGGCCCAGTGACAAGAATAA-TA
1 AAAGGCTTCGGCCCAGTGACAAG-ATAACGA
81808446 CAAAGGCTTCGGCCCAGT
1 -AAAGGCTTCGGCCCAGT
81808464 ACATGTTGAG
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
30 21 0.50
31 21 0.50
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTGACAAGATAACGA
Found at i:81816314 original size:22 final size:22
Alignment explanation
Indices: 81816272--81816315 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
81816262 AAAGTGTGCA
* *
81816272 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATACACTTAGC
81816294 TATATGAATGTTATAC-CTTAGC
1 TATATGAA-GTTATACACTTAGC
81816316 CGAAACTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATATGAAGTTATACACTTAGC
Found at i:81824046 original size:40 final size:40
Alignment explanation
Indices: 81823991--81824126 Score: 204
Period size: 40 Copynumber: 3.4 Consensus size: 40
81823981 GGATGATAAC
81823991 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATT
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATT
* *
81824031 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTGTATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATT
* *
81824071 CGGGCTAGGACCCGAAGGCATTTGTGCGAGTTGTTATA-T
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATT
*
81824110 CCGGCTAA-ATCCCGAAG
1 CGGGCTAAGA-CCCGAAG
81824127 ATACTTGGGT
Statistics
Matches: 87, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
38 1 0.01
39 13 0.15
40 73 0.84
ACGTcount: A:0.22, C:0.22, G:0.31, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATT
Found at i:81825655 original size:25 final size:25
Alignment explanation
Indices: 81825612--81825682 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
81825602 GAGGAAGTGC
* *
81825612 AAAAGGGCTTTTGTCCCAGTTTACCG
1 AAAAGGGC-TTTGCCCCAGTTTACCA
*
81825638 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
81825663 AAAAGGGCTTTACCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
81825683 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
25 33 0.80
26 8 0.20
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:81825695 original size:24 final size:25
Alignment explanation
Indices: 81825626--81825695 Score: 74
Period size: 25 Copynumber: 2.8 Consensus size: 25
81825616 GGGCTTTTGT
* *
81825626 CCCAGTTTACCGAAAAG-GGCTTTGC
1 CCCAGTTTATC-AAAAGAGGCTTTAC
81825651 CCCAGTTTATCAAAA-AGGGCTTTAC
1 CCCAGTTTATCAAAAGA-GGCTTTAC
*
81825676 CCCAG-TTATTAAAAGAGGCT
1 CCCAGTTTATCAAAAGAGGCT
81825696 AGGCGTCCAG
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
24 16 0.41
25 23 0.59
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (25 bp):
CCCAGTTTATCAAAAGAGGCTTTAC
Found at i:81825937 original size:30 final size:31
Alignment explanation
Indices: 81825903--81825985 Score: 125
Period size: 30 Copynumber: 2.7 Consensus size: 31
81825893 CGTTTACAGT
81825903 AAAGGCTTCGGCCCAGTGATATG-ATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
81825933 AAAGGCTTCGGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
81825964 AAAGGCTTCGGCCTAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
81825986 TTGAGATTGA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
30 26 0.54
31 22 0.46
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:81831392 original size:46 final size:46
Alignment explanation
Indices: 81831316--81831574 Score: 331
Period size: 46 Copynumber: 5.6 Consensus size: 46
81831306 TGATGTCACA
* * * * *
81831316 GTATCTTTCAACTACGGTTTTACTCGTTTTC-TGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTC-ATTTCATGTCAGGTTGCCATG
* ** *
81831362 GTATCTTTCAACCATGGTCTTATTCATTTTCCCGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCA-TTTCATGTCAGGTTGCCATG
* * *
81831409 GCATCTTTCAACCATGGTATTACTCATTTCAAGTCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGTTGCCATG
* * *
81831455 GTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGTTGCCATG
* *
81831501 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGTTGCCATG
*
81831547 GTATCTTTCAACCATGGTCTTACACATT
1 GTATCTTTCAACCATGGTCTTACTCATT
81831575 CCATATTAGA
Statistics
Matches: 190, Mismatches: 21, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
46 153 0.81
47 37 0.19
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (46 bp):
GTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGTTGCCATG
Found at i:81834788 original size:16 final size:16
Alignment explanation
Indices: 81834769--81834799 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
81834759 CTTCTTCACT
81834769 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
81834785 TACTTACTTACTTAA
1 TACTCACTTACTTAA
81834800 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:81834805 original size:20 final size:20
Alignment explanation
Indices: 81834766--81834805 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
81834756 AAACTTCTTC
* *
81834766 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
81834786 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
81834806 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:81835097 original size:53 final size:54
Alignment explanation
Indices: 81835007--81835222 Score: 183
Period size: 55 Copynumber: 4.0 Consensus size: 54
81834997 TACGTGGTAT
* * ***
81835007 CCTTTTGAAACTTACCATTGCCATG-TCTCAACATGGTCTTACATGGTATCCTTG
1 CCTTATGAAACTTACCAATGCCATGCT-TTGGCATGGTCTTACATGGTATCCTTG
* *
81835061 CCTTATG-AACTCACCAATGCCATGCTTTGGCATGGTCTTACATGGGA-CCTTTG
1 CCTTATGAAACTTACCAATGCCATGCTTTGGCATGGTCTTACATGGTATCC-TTG
** * * *
81835114 CCTTATAGAAACTTATTAATGCCATGTCTTAGTG--TGGTCTTACATGATATCCTTT
1 CCTTAT-GAAACTTACCAATGCCATG-CTTTG-GCATGGTCTTACATGGTATCCTTG
** * *
81835169 CCTTA-GAAACCTTACCAATTTTCATGCCTTGGCATGGTCTTGCATGGTATCCTT
1 CCTTATGAAA-CTTACCAA-TGCCATGCTTTGGCATGGTCTTACATGGTATCCTT
81835223 AAACCCTAAT
Statistics
Matches: 129, Mismatches: 22, Indels: 21
0.75 0.13 0.12
Matches are distributed among these distances:
52 2 0.02
53 46 0.36
54 17 0.13
55 57 0.44
56 6 0.05
57 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (54 bp):
CCTTATGAAACTTACCAATGCCATGCTTTGGCATGGTCTTACATGGTATCCTTG
Found at i:81839522 original size:53 final size:54
Alignment explanation
Indices: 81839342--81839548 Score: 236
Period size: 53 Copynumber: 3.8 Consensus size: 54
81839332 ATTAGGGTTT
* * * *
81839342 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
* * * * * * *
81839396 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTCTATAAGGC
** * * *
81839451 AAATATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
* *
81839504 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGCAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
81839549 TAAAAAGAAA
Statistics
Matches: 124, Mismatches: 28, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
53 45 0.36
54 37 0.30
55 42 0.34
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.20
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
Found at i:81843944 original size:28 final size:29
Alignment explanation
Indices: 81843904--81844016 Score: 142
Period size: 29 Copynumber: 4.0 Consensus size: 29
81843894 CCTGTATCTA
* *
81843904 GCCCATTAAGCCC-AATCATATTCATATG
1 GCCCATTAGGCCCAAATCACATTCATATG
*
81843932 GCCCATTAGGCCCAAATCACCTGT-ATATG
1 GCCCATTAGGCCCAAATCACAT-TCATATG
*
81843961 GCCCATTAGGCCCAAATCACATTTATATG
1 GCCCATTAGGCCCAAATCACATTCATATG
* *
81843990 GCCCGTTAGGCCC-AGTCACATTCATAT
1 GCCCATTAGGCCCAAATCACATTCATAT
81844017 TGATGCTCAC
Statistics
Matches: 75, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
28 25 0.33
29 49 0.65
30 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (29 bp):
GCCCATTAGGCCCAAATCACATTCATATG
Found at i:81844002 original size:58 final size:57
Alignment explanation
Indices: 81843893--81844003 Score: 159
Period size: 58 Copynumber: 1.9 Consensus size: 57
81843883 AATTTCACAT
* *
81843893 ACCTGTATCTAGCCCATTAAGCCCAATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATAGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
* * * *
81843950 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTGTATATAGCCCATTAAGCCC-AATCACATTCATATGGCCCATTAGGCCCA
81844004 GTCACATTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 21 0.45
58 26 0.55
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.26
Consensus pattern (57 bp):
ACCTGTATATAGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:81845379 original size:16 final size:16
Alignment explanation
Indices: 81845358--81845391 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
81845348 AGAAAATTCG
*
81845358 GGATTTCGGGATTTTT
1 GGATTTCGAGATTTTT
81845374 GGATTTCGAGATTTTT
1 GGATTTCGAGATTTTT
81845390 GG
1 GG
81845392 GCAGTTACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.15, C:0.06, G:0.32, T:0.47
Consensus pattern (16 bp):
GGATTTCGAGATTTTT
Done.