Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 247 of 276
Found at i:81846862 original size:27 final size:27
Alignment explanation
Indices: 81846811--81846899 Score: 99
Period size: 27 Copynumber: 3.2 Consensus size: 27
81846801 GTGACAGAGT
*
81846811 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAAATA-TTTGTGGCAGTGC
* *
81846840 CACCAGAACAAATATATGTGGCAGGGC
1 CACCAGAACAAATATTTGTGGCAGTGC
*
81846867 CACCAGAACATATAATTTGTGGCA-TAGC
1 CACCAGAACAAAT-ATTTGTGGCAGT-GC
81846895 CACCA
1 CACCA
81846900 TGACCCTTCC
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.21
Consensus pattern (27 bp):
CACCAGAACAAATATTTGTGGCAGTGC
Found at i:81847053 original size:28 final size:28
Alignment explanation
Indices: 81847006--81847070 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
81846996 AAATTAACCC
*
81847006 TAGGGGTATAAAGGTCATTTTGCACACA
1 TAGGGGTATAAAGGTAATTTTGCACACA
* *
81847034 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCACACA
81847062 TAGGGGTAT
1 TAGGGGTAT
81847071 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.31, C:0.09, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCACACA
Found at i:81854548 original size:27 final size:28
Alignment explanation
Indices: 81854497--81854562 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 28
81854487 GTGACAGAGT
* * *
81854497 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAAATATTATGTGGCAGGGC
81854526 CACCAGAACAAATA-TATGTGGCAGGGC
1 CACCAGAACAAATATTATGTGGCAGGGC
81854553 CACCAGAACA
1 CACCAGAACA
81854563 GATAATTTGT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 21 0.62
28 6 0.18
29 7 0.21
ACGTcount: A:0.35, C:0.24, G:0.23, T:0.18
Consensus pattern (28 bp):
CACCAGAACAAATATTATGTGGCAGGGC
Found at i:81854582 original size:28 final size:27
Alignment explanation
Indices: 81854497--81854585 Score: 81
Period size: 27 Copynumber: 3.2 Consensus size: 27
81854487 GTGACAGAGT
* *
81854497 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGG-AATGC
* * **
81854526 CACCAGAACAAAT-ATATGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGG-AATGC
81854553 CACCAGAACAGATAATTTGTGGAATAGC
1 CACCAGAACAGATAATTTGTGGAAT-GC
81854581 CACCA
1 CACCA
81854586 TGACCCTTCC
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
27 24 0.48
28 19 0.38
29 7 0.14
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGAATGC
Found at i:81854651 original size:71 final size:71
Alignment explanation
Indices: 81854563--81854704 Score: 275
Period size: 71 Copynumber: 2.0 Consensus size: 71
81854553 CACCAGAACA
*
81854563 GATAATTTGTGGAATAGCCACCATGACCCTTCCTCCATAATATAACCCATGTCCCCATGCAACAA
1 GATAATTTGTGGAATAGCCACCAGGACCCTTCCTCCATAATATAACCCATGTCCCCATGCAACAA
81854628 ATATTC
66 ATATTC
81854634 GATAATTTGTGGAATAGCCACCAGGACCCTTCCTCCATAATATAACCCATGTCCCCATGCAACAA
1 GATAATTTGTGGAATAGCCACCAGGACCCTTCCTCCATAATATAACCCATGTCCCCATGCAACAA
81854699 ATATTC
66 ATATTC
81854705 ATTCATGGCA
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 70 1.00
ACGTcount: A:0.32, C:0.30, G:0.12, T:0.26
Consensus pattern (71 bp):
GATAATTTGTGGAATAGCCACCAGGACCCTTCCTCCATAATATAACCCATGTCCCCATGCAACAA
ATATTC
Found at i:81855886 original size:12 final size:13
Alignment explanation
Indices: 81855867--81855899 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
81855857 GGGTTCGGCT
81855867 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
81855880 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
81855892 ATGGAGAA
1 ATGGAGAA
81855900 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:81866643 original size:40 final size:40
Alignment explanation
Indices: 81866599--81866677 Score: 140
Period size: 40 Copynumber: 2.0 Consensus size: 40
81866589 CCCGGTTGTC
*
81866599 ATTCCAGCACGAAGCCTACGGGTCTTTAAGCCCGGATACA
1 ATTCCAGCACAAAGCCTACGGGTCTTTAAGCCCGGATACA
*
81866639 ATTCCAGCACAAAGCCTACGGGTTTTTAAGCCCGGATAC
1 ATTCCAGCACAAAGCCTACGGGTCTTTAAGCCCGGATAC
81866678 TGTAACACCT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
ATTCCAGCACAAAGCCTACGGGTCTTTAAGCCCGGATACA
Found at i:81868090 original size:37 final size:37
Alignment explanation
Indices: 81868040--81868118 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
81868030 TTATTACGAA
* *
81868040 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
81868077 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
81868114 GTCTT
1 GTCTT
81868119 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:81868315 original size:47 final size:47
Alignment explanation
Indices: 81868237--81868772 Score: 838
Period size: 47 Copynumber: 11.4 Consensus size: 47
81868227 CCCTTCGGGA
* * * * * * * *
81868237 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
81868284 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
81868331 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
81868378 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
81868425 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
81868472 CTTATCACATATATACACTCTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
81868519 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * * * *
81868566 CTTATCATACATATACATTTTCACATTCATCTCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
81868613 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
81868660 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * * *
81868707 CTTATCATACATATACACTTTCACATTCATCTCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
81868754 CTTATCACATATATACACT
1 CTTATCACATATATACACT
81868773 GTCTTGGCTG
Statistics
Matches: 459, Mismatches: 30, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 459 1.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:81870639 original size:53 final size:53
Alignment explanation
Indices: 81870577--81870682 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
81870567 TGTTTCTATC
81870577 ACTCTTTCCTTCTTTTAATTATTCTTTCTTCCATAATATAAAGCCATTAACTA
1 ACTCTTTCCTTCTTTTAATTATTCTTTCTTCCATAATATAAAGCCATTAACTA
*
81870630 ACTCTTTCCTTCTTTTTATTATTCTTTCTTCCATAATATAAAGCCATTAACTA
1 ACTCTTTCCTTCTTTTAATTATTCTTTCTTCCATAATATAAAGCCATTAACTA
81870683 TTATCATGCT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.27, C:0.23, G:0.02, T:0.48
Consensus pattern (53 bp):
ACTCTTTCCTTCTTTTAATTATTCTTTCTTCCATAATATAAAGCCATTAACTA
Found at i:81877381 original size:17 final size:17
Alignment explanation
Indices: 81877359--81877401 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
81877349 TTCAAGTGAC
81877359 TGAATTTACATCCTAGG
1 TGAATTTACATCCTAGG
81877376 TGAATTTACATCCTAGG
1 TGAATTTACATCCTAGG
*
81877393 TAAATTTAC
1 TGAATTTAC
81877402 TATTTTGCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (17 bp):
TGAATTTACATCCTAGG
Found at i:81880958 original size:6 final size:6
Alignment explanation
Indices: 81880928--81881002 Score: 73
Period size: 6 Copynumber: 12.3 Consensus size: 6
81880918 AAGAAACATT
* * *
81880928 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGCTAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT-C-AGA
*
81880977 ATCAAA ATCAGA ATCAGA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCAGA AT
81881003 GAAGCCCATA
Statistics
Matches: 56, Mismatches: 8, Indels: 10
0.76 0.11 0.14
Matches are distributed among these distances:
5 2 0.04
6 49 0.88
7 4 0.07
8 1 0.02
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:81881382 original size:27 final size:27
Alignment explanation
Indices: 81881352--81881466 Score: 72
Period size: 27 Copynumber: 4.3 Consensus size: 27
81881342 TCACTTGCCC
81881352 ACAAGGGCAAAAT-GGTAATTTTACCCT
1 ACAAGGG-AAAATCGGTAATTTTACCCT
* **
81881379 ACAAGGGTATCTCGGTAATTTTACCCT
1 ACAAGGGAAAATCGGTAATTTTACCCT
* * ** *
81881406 ACAGGGGTATTTCGGT-ATTTCTACTCT
1 ACAAGGGAAAATCGGTAATTT-TACCCT
* * ** * *
81881433 ATAAGGGTATTTTGGTAATTCTACCCT
1 ACAAGGGAAAATCGGTAATTTTACCCT
81881460 ACAAGGG
1 ACAAGGG
81881467 TATTTCAGTA
Statistics
Matches: 73, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
26 6 0.08
27 64 0.88
28 3 0.04
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (27 bp):
ACAAGGGAAAATCGGTAATTTTACCCT
Found at i:81881467 original size:27 final size:27
Alignment explanation
Indices: 81881365--81881497 Score: 160
Period size: 27 Copynumber: 5.0 Consensus size: 27
81881355 AGGGCAAAAT
* *
81881365 GGTAATTTTACCCTACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
81881392 GGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
81881419 GGTATTTCTACTCTATAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
81881446 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
81881473 AGTAATTCTA-CCTATAGGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
81881498 TAATAATTTT
Statistics
Matches: 91, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
26 13 0.14
27 78 0.86
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:81884625 original size:17 final size:16
Alignment explanation
Indices: 81884596--81884629 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
81884586 TCTGCTTACC
81884596 AGATTCATAGAATTTT
1 AGATTCATAGAATTTT
*
81884612 AGATATCATGGAATTTT
1 AGAT-TCATAGAATTTT
81884629 A
1 A
81884630 ATCTCCACTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.38, C:0.06, G:0.15, T:0.41
Consensus pattern (16 bp):
AGATTCATAGAATTTT
Found at i:81889566 original size:47 final size:47
Alignment explanation
Indices: 81889485--81889765 Score: 409
Period size: 47 Copynumber: 5.9 Consensus size: 47
81889475 AATGTGAAAG
*
81889485 TGTATATGTGTGAATAGGGCCGAATGGCCAATGTGATGAAAGTGAACA
1 TGTATATGTGTG-ATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
81889533 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* * *
81889580 TGTGTATGTGTGAATAGGGCCGAATGGCCAATGTGATGAATGTGAACA
1 TGTATATGTGTG-ATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* * * * *
81889628 TGCATATATGAGATAAGGCCGAATGGCCGATGTGATGAATGTGAACA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* * *
81889675 TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* * *
81889722 TGTGTATGTGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGA
81889766 GCTTGATTGC
Statistics
Matches: 214, Mismatches: 18, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
47 161 0.75
48 53 0.25
ACGTcount: A:0.32, C:0.11, G:0.31, T:0.25
Consensus pattern (47 bp):
TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
Found at i:81889602 original size:95 final size:95
Alignment explanation
Indices: 81889475--81889765 Score: 433
Period size: 95 Copynumber: 3.1 Consensus size: 95
81889465 TAATTGAATA
*
81889475 AATGTGAA-AGTGTATATGTGTGAATAGGGCCGAATGGCCAATGTGATGAAAGTGAACATGTATA
1 AATGTGAACA-TGCATATGTGTGAATAGGGCCGAATGGCCAATGTGATGAAAGTGAACATGTATA
81889539 TGTGTGATAAGGCCGAATGGCCAATGTGATG
65 TGTGTGATAAGGCCGAATGGCCAATGTGATG
* ** * *
81889570 AAAGTGAACATGTGTATGTGTGAATAGGGCCGAATGGCCAATGTGATGAATGTGAACATGCATAT
1 AATGTGAACATGCATATGTGTGAATAGGGCCGAATGGCCAATGTGATGAAAGTGAACATGTATAT
* * *
81889635 ATGAGATAAGGCCGAATGGCCGATGTGATG
66 GTGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
81889665 AATGTGAACATGCATATATGAG-ATAAGGCCGAATGGCCAATGTGATGAAAGTGAACATGTGTAT
1 AATGTGAACATGCATATGTGTGAATAGGGCCGAATGGCCAATGTGATGAAAGTGAACATGTATAT
*
81889729 GTGTGATAAGGCCGAGTGGCCAATGTGATG
66 GTGTGATAAGGCCGAATGGCCAATGTGATG
81889759 AATGTGA
1 AATGTGA
81889766 GCTTGATTGC
Statistics
Matches: 175, Mismatches: 20, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
94 71 0.41
95 103 0.59
96 1 0.01
ACGTcount: A:0.33, C:0.11, G:0.31, T:0.25
Consensus pattern (95 bp):
AATGTGAACATGCATATGTGTGAATAGGGCCGAATGGCCAATGTGATGAAAGTGAACATGTATAT
GTGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:81889675 original size:142 final size:141
Alignment explanation
Indices: 81889502--81889765 Score: 456
Period size: 142 Copynumber: 1.9 Consensus size: 141
81889492 GTGTGAATAG
* * *
81889502 GGCCGAATGGCCAATGTGATGAAAGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTG
1 GGCCGAATGGCCAATGTGATGAAAGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTG
*
81889567 ATGAAAGTGAACATGTGTATGTGTGAATAGGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
66 ATGAAAGTGAACATGTGTATGTGTG-ATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
81889632 TATATGAGATAA
130 TATATGAGATAA
* *
81889644 GGCCGAATGGCCGATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTG
1 GGCCGAATGGCCAATGTGATGAAAGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTG
*
81889709 ATGAAAGTGAACATGTGTATGTGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGA
66 ATGAAAGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
81889766 GCTTGATTGC
Statistics
Matches: 115, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
141 30 0.26
142 85 0.74
ACGTcount: A:0.33, C:0.12, G:0.31, T:0.24
Consensus pattern (141 bp):
GGCCGAATGGCCAATGTGATGAAAGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTG
ATGAAAGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCAT
ATATGAGATAA
Found at i:81890791 original size:84 final size:84
Alignment explanation
Indices: 81890649--81890815 Score: 307
Period size: 84 Copynumber: 2.0 Consensus size: 84
81890639 AGTGTAGTCG
*
81890649 ATCCCTGTAACATGGGAGACTTTGACTAATAAACTGTACTAATTGGCGGGACCAAAAATTCTAGA
1 ATCCCTGTAACATGGGAGACTTTGACTAATAAACTGTACTAATTGGCCGGACCAAAAATTCTAGA
*
81890714 AAACAATATGTAGATGGGA
66 AAAAAATATGTAGATGGGA
*
81890733 ATCCCTGTAACATGGGAGACTTTGACTAATAAACTGTACTAATTGGCCGGACCGAAAATTCTAGA
1 ATCCCTGTAACATGGGAGACTTTGACTAATAAACTGTACTAATTGGCCGGACCAAAAATTCTAGA
81890798 AAAAAATATGTAGATGGG
66 AAAAAATATGTAGATGGG
81890816 CTAAACTGTA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
84 80 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (84 bp):
ATCCCTGTAACATGGGAGACTTTGACTAATAAACTGTACTAATTGGCCGGACCAAAAATTCTAGA
AAAAAATATGTAGATGGGA
Found at i:81890846 original size:55 final size:55
Alignment explanation
Indices: 81890762--81890870 Score: 191
Period size: 55 Copynumber: 2.0 Consensus size: 55
81890752 CTTTGACTAA
*
81890762 TAAACTGTACTAATTGGCCGGACCGAAAATTCTAGAAAAAAATATGTAGATGGGC
1 TAAACTGTACTAATTGGCCGGACCAAAAATTCTAGAAAAAAATATGTAGATGGGC
* *
81890817 TAAACTGTACTAATTGGCGGGACCAAAAATTCTAGAAAACAATATGTAGATGGG
1 TAAACTGTACTAATTGGCCGGACCAAAAATTCTAGAAAAAAATATGTAGATGGG
81890871 AATATGAGTC
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 51 1.00
ACGTcount: A:0.40, C:0.14, G:0.22, T:0.24
Consensus pattern (55 bp):
TAAACTGTACTAATTGGCCGGACCAAAAATTCTAGAAAAAAATATGTAGATGGGC
Found at i:81891590 original size:40 final size:40
Alignment explanation
Indices: 81891509--81892489 Score: 1763
Period size: 40 Copynumber: 24.5 Consensus size: 40
81891499 GAATGATGTT
* *
81891509 CGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATATC
* * * * *
81891549 CGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAATC
1 CGGGCTAAG-TCCCGAAGAGCATTCGTGCTAGTGA-TATATC
81891589 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
81891629 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
81891669 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
81891709 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
81891749 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
81891789 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
81891829 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
81891869 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
81891909 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
81891949 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
81891989 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
81892029 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
81892069 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
81892109 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
81892149 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
81892189 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
81892229 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
81892269 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
* *
81892309 CGGGCTAAGTCCCGAAGAGCATTCGTGCTTGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
*
81892349 CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
* *
81892389 CGGGCTAAGTCCCGAAGAGCATTTGTGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
*
81892429 CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
* *
81892469 CGTGCTAAATCCCGAAGAGCA
1 CGGGCTAAGTCCCGAAGAGCA
81892490 ATCATGCTGG
Statistics
Matches: 912, Mismatches: 25, Indels: 8
0.97 0.03 0.01
Matches are distributed among these distances:
39 1 0.00
40 891 0.98
41 20 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
Found at i:81917864 original size:49 final size:49
Alignment explanation
Indices: 81917792--81918066 Score: 300
Period size: 49 Copynumber: 5.5 Consensus size: 49
81917782 TGAGGTCACG
**
81917792 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGATAATTGGTCGCA
* * * * * * * *
81917841 TGTGTATTACTAAGTGCAAGCTACTATGCGTACCCGAAAACTATGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGATAA-T-TGGTCGCA
*
81917892 TGTGTAGTACTAAGTGCAGGCTATTACGTGTA-CCGAATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCG-ATAATTGGTCGCA
* * * * * *
81917941 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGATAA-T-TGGTCGCA
* ** *
81917992 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCAAATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGATAATTGGTCGCA
*
81918041 TGTGTAGTACTAAGTGTAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
81918067 TGCGTACCAG
Statistics
Matches: 182, Mismatches: 38, Indels: 12
0.78 0.16 0.05
Matches are distributed among these distances:
49 99 0.54
50 10 0.05
51 73 0.40
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGATAATTGGTCGCA
Found at i:81917964 original size:100 final size:100
Alignment explanation
Indices: 81917787--81918074 Score: 486
Period size: 100 Copynumber: 2.9 Consensus size: 100
81917777 TATTGTGAGG
* * *
81917787 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCGCATGTGTATTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGTACT
*
81917852 AAGTGCAAGCTACTATGCGTACCCGAAAACTATGA
66 AAGTGCAGGCTACTATGCGTACCCGAAAACTATGA
*
81917887 TCACGTGTGTAGTACTAAGTGCAGGCTATTACGTGTACCGAATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGTACT
*
81917952 AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
66 AAGTGCAGGCTACTATGCGTACCCGAAAACTATGA
* * *
81917987 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAAATTATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGTACT
*
81918052 AAGTGTAGGCTACTATGCGTACC
66 AAGTGCAGGCTACTATGCGTACC
81918075 AGATAGCTTC
Statistics
Matches: 177, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 177 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCCGAAAACTATGA
Found at i:81919929 original size:19 final size:19
Alignment explanation
Indices: 81919905--81919943 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
81919895 AACCATATCG
81919905 AAACTAGCCTATACATGCC
1 AAACTAGCCTATACATGCC
81919924 AAACTAGCCTATACATGCC
1 AAACTAGCCTATACATGCC
81919943 A
1 A
81919944 CATTACCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.31, G:0.10, T:0.21
Consensus pattern (19 bp):
AAACTAGCCTATACATGCC
Found at i:81923520 original size:21 final size:21
Alignment explanation
Indices: 81923496--81923550 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
81923486 AGACCAAGTT
81923496 ACACGACCGTGTGGCTGAGGG
1 ACACGACCGTGTGGCTGAGGG
*
81923517 ACAC-ACCTGTGTGGTTGAGGG
1 ACACGACC-GTGTGGCTGAGGG
* *
81923538 ACATGCCCGTGTG
1 ACACGACCGTGTG
81923551 ATAGGGGTAC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 3 0.10
21 24 0.83
22 2 0.07
ACGTcount: A:0.18, C:0.24, G:0.38, T:0.20
Consensus pattern (21 bp):
ACACGACCGTGTGGCTGAGGG
Found at i:81932278 original size:47 final size:46
Alignment explanation
Indices: 81932202--81932366 Score: 222
Period size: 47 Copynumber: 3.5 Consensus size: 46
81932192 CTTCGGGACT
* * * * * *
81932202 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCTC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC-C
*
81932249 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
81932295 TCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 T-ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
* *
81932342 TTATCACATATATATACATTCACAT
1 -TATCACATATATACACTTTCACAT
81932367 CGCAATTATC
Statistics
Matches: 106, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
46 2 0.02
47 103 0.97
48 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (46 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
Found at i:81941941 original size:22 final size:22
Alignment explanation
Indices: 81941915--81941994 Score: 90
Period size: 22 Copynumber: 3.6 Consensus size: 22
81941905 TGTGCTGATA
81941915 AACAGTAAGCTCTATTGAGCTG
1 AACAGTAAGCTCTATTGAGCTG
** *
81941937 AACAGTAAGCTCGT-TCAAGCTA
1 AACAGTAAGCTC-TATTGAGCTG
* *
81941959 AATCAGTAAGCTCCAATGAGCTG
1 AA-CAGTAAGCTCTATTGAGCTG
81941982 AACAGTAAGCTCT
1 AACAGTAAGCTCT
81941995 TACGAGGTAT
Statistics
Matches: 46, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
22 29 0.63
23 17 0.37
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (22 bp):
AACAGTAAGCTCTATTGAGCTG
Found at i:81953129 original size:30 final size:30
Alignment explanation
Indices: 81953095--81953155 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
81953085 TCCTTAACTC
81953095 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * *
81953125 AAACTTTTGCATATTTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
81953155 A
1 A
81953156 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:81953326 original size:12 final size:12
Alignment explanation
Indices: 81953309--81953334 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
81953299 AAAATAGGGC
81953309 TTTAGTGGCGTT
1 TTTAGTGGCGTT
81953321 TTTAGTGGCGTT
1 TTTAGTGGCGTT
81953333 TT
1 TT
81953335 ATAAAAACCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.08, G:0.31, T:0.54
Consensus pattern (12 bp):
TTTAGTGGCGTT
Found at i:81953451 original size:41 final size:39
Alignment explanation
Indices: 81953398--81953621 Score: 232
Period size: 41 Copynumber: 5.5 Consensus size: 39
81953388 AAAACACCAG
* **
81953398 TAAAAATAGAGCAACAGCGGCGTTTTCGTAAAAAATGCCGC
1 TAAAAACAGAGCATTAGCGGCGTTTTCGT--AAAATGCCGC
* **
81953439 TAAAAACAGAGCATTAGCGGCGCTTTCGGTAAAACACCGC
1 TAAAAACAGAGCATTAGCGGCGTTTTC-GTAAAATGCCGC
* *
81953479 TAAAAGCTAGAGCATTAGCGGCGCTTTTGGTAAAATGCCGC
1 TAAAAAC-AGAGCATTAGCGGCG-TTTTCGTAAAATGCCGC
* * *
81953520 TAAAAGCCAGAGCATTAGCGGCGCTTTCATCAAAATGCCGC
1 TAAAA-ACAGAGCATTAGCGGCGTTTTCGT-AAAATGCCGC
* * *
81953561 TAAAAACCAGAGCACTAGCGGCGCTTTTGGTAAAACGCCGC
1 TAAAAA-CAGAGCATTAGCGGCG-TTTTCGTAAAATGCCGC
81953602 TAAAAACCAGAGCATTAGCG
1 TAAAAA-CAGAGCATTAGCG
81953622 ACACTTTTGC
Statistics
Matches: 154, Mismatches: 22, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
40 18 0.12
41 126 0.82
42 10 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.19
Consensus pattern (39 bp):
TAAAAACAGAGCATTAGCGGCGTTTTCGTAAAATGCCGC
Found at i:81953540 original size:82 final size:81
Alignment explanation
Indices: 81953387--81953621 Score: 282
Period size: 82 Copynumber: 2.9 Consensus size: 81
81953377 GTGTTCTAAA
* * *
81953387 CAAAACACCAG-TAAAAA-TAGAGCAAC-AGCGGCG-TTTTCGTAAAAAATGCCGCTAAAAACAG
1 CAAAACACC-GCTAAAAACCAGAGC-ACTAGCGGCGCTTTTGGT--AAAATGCCGCTAAAACCAG
*
81953448 AGCATTAGCGGCGCTTTCGGT
62 AGCATTAGCGGCGCTTTC-AT
* * *
81953469 -AAAACACCGCTAAAAGCTAGAGCATTAGCGGCGCTTTTGGTAAAATGCCGCTAAAAGCCAGAGC
1 CAAAACACCGCTAAAAACCAGAGCACTAGCGGCGCTTTTGGTAAAATGCCGCTAAAA-CCAGAGC
81953533 ATTAGCGGCGCTTTCAT
65 ATTAGCGGCGCTTTCAT
** *
81953550 CAAAATGCCGCTAAAAACCAGAGCACTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACCAGAGC
1 CAAAACACCGCTAAAAACCAGAGCACTAGCGGCGCTTTTGGTAAAATGCCGCT-AAAACCAGAGC
81953615 ATTAGCG
65 ATTAGCG
81953622 ACACTTTTGC
Statistics
Matches: 135, Mismatches: 11, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
80 1 0.01
81 30 0.22
82 94 0.70
83 10 0.07
ACGTcount: A:0.35, C:0.24, G:0.23, T:0.18
Consensus pattern (81 bp):
CAAAACACCGCTAAAAACCAGAGCACTAGCGGCGCTTTTGGTAAAATGCCGCTAAAACCAGAGCA
TTAGCGGCGCTTTCAT
Found at i:81953629 original size:41 final size:41
Alignment explanation
Indices: 81953429--81953648 Score: 282
Period size: 41 Copynumber: 5.4 Consensus size: 41
81953419 GTTTTCGTAA
* *
81953429 AAAATGCCGCTAAAAA-CAGAGCATTAGCGGCGCTTTCGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
* * *
81953469 AAAACACCGCTAAAAGCTAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
* * **
81953510 AAAATGCCGCTAAAAGCCAGAGCATTAGCGGCGC-TTTCAT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
* *
81953550 CAAAATGCCGCTAAAAACCAGAGCACTAGCGGCGCTTTTGGT
1 -AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
* * *
81953592 AAAACGCCGCTAAAAACCAGAGCATTAGCGACACTTTTGCT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
*
81953633 AAAACGCCACTAAAAA
1 AAAACGCCGCTAAAAA
81953649 TCCCATAACC
Statistics
Matches: 157, Mismatches: 20, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
40 17 0.11
41 136 0.87
42 4 0.03
ACGTcount: A:0.35, C:0.25, G:0.21, T:0.19
Consensus pattern (41 bp):
AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
Found at i:81953814 original size:14 final size:14
Alignment explanation
Indices: 81953792--81953831 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
81953782 TTAATTATCA
* *
81953792 TTATAGTTTAAGGT
1 TTATGGTTTAAGAT
81953806 TTATGGTTTAAGAT
1 TTATGGTTTAAGAT
*
81953820 ATATGGTTTAAG
1 TTATGGTTTAAG
81953832 CAGGTTTAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.30, C:0.00, G:0.23, T:0.47
Consensus pattern (14 bp):
TTATGGTTTAAGAT
Found at i:81964535 original size:27 final size:27
Alignment explanation
Indices: 81964505--81964682 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
81964495 ATATTGAGTC
* * * *
81964505 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
81964532 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
81964559 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
81964587 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
81964614 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
81964641 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
81964668 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
81964683 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:81964644 original size:82 final size:81
Alignment explanation
Indices: 81964526--81964681 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
81964516 TGCTATATAA
* *
81964526 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
81964591 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
81964608 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
81964672 CACTTAGTGC
65 CACTTAGTGC
81964682 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:81967270 original size:40 final size:41
Alignment explanation
Indices: 81967226--81967411 Score: 184
Period size: 40 Copynumber: 4.6 Consensus size: 41
81967216 CCAGCATGGT
*
81967226 TGCTCTTCGGGACCTAGCCCGGATATAA-CACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAATCACCAGCACAAA
* * ** * *
81967266 TGCTCTTCGGAACTTAGTCCGGATA-CCTCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAATCACCAGCACAAA
* * * * *
81967306 TGCTCTTCGGAATTTAGCCCGGATTTAATAACTC-GCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATAATCAC-CAGCACAAA
* * * *
81967347 TGC-CTTCGGGTCTTAGCCCGGATATAATCACTAGCTCAAT
1 TGCTCTTCGGGACTTAGCCCGGATATAATCACCAGCACAAA
81967387 TGC-CTTCGGGACTTAGCCCGGATAT
1 TGCTCTTCGGGACTTAGCCCGGATAT
81967412 CATTCAAATG
Statistics
Matches: 117, Mismatches: 25, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
40 105 0.90
41 12 0.10
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (41 bp):
TGCTCTTCGGGACTTAGCCCGGATATAATCACCAGCACAAA
Found at i:81967738 original size:29 final size:29
Alignment explanation
Indices: 81967704--81967806 Score: 172
Period size: 29 Copynumber: 3.6 Consensus size: 29
81967694 TAATCAACCA
81967704 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGTACTTTAAACT
81967733 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGTACTTTAAACT
* *
81967762 CGCACACTTAGTGCCATGCA-TTTCAAGCT
1 CGCACACTTAGTGCCATGTACTTT-AAACT
81967791 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
81967807 ATCTCACAAC
Statistics
Matches: 71, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
28 3 0.04
29 68 0.96
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGTACTTTAAACT
Found at i:81974762 original size:40 final size:40
Alignment explanation
Indices: 81974532--81974795 Score: 322
Period size: 40 Copynumber: 6.6 Consensus size: 40
81974522 TTTGAATGAT
* * *
81974532 ATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAA
* *
81974572 ATCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAA
* *
81974612 ATCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAA
*
81974652 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAA
* *
81974692 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAA
* *
81974732 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTACA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTA-A
**
81974773 A-CCGGGCTGTGTCCCGAAGGCAT
1 ATCCGGGCTAAGTCCCGAAGGCAT
81974796 GTGAACGAGG
Statistics
Matches: 208, Mismatches: 11, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
39 1 0.00
40 194 0.93
41 12 0.06
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAA
Found at i:81974816 original size:80 final size:80
Alignment explanation
Indices: 81974532--81974831 Score: 274
Period size: 80 Copynumber: 3.8 Consensus size: 80
81974522 TTTGAATGAT
* * * * **
81974532 ATCCGGGCTAAGTCCCGAAGGCTTTGTG--CTAAGTGACCATATCCGGACTAAGAT-CCGAAGGC
1 ATCCGGGCTAAGTCCCGAAGGC-ATGTGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGC
*
81974594 CTTTGTGCGAGATACTAA
63 ATTTGTGCGAGATACTAA
* * * **
81974612 ATCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCA
1 ATCCGGGCTAAG-TCCCGAAGGCATGTGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCA
81974675 TTTGTGCGAGATACTAA
64 TTTGTGCGAGATACTAA
* * ** *
81974692 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATGTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATT
*
81974757 TGTGCGAGTTACTACA
66 TGTGCGAGATACTA-A
** * * *
81974773 A-CCGGGCTGTGTCCCGAAGGCATGTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGGCATGTGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
81974832 TACGTGATTT
Statistics
Matches: 188, Mismatches: 23, Indels: 19
0.82 0.10 0.08
Matches are distributed among these distances:
79 21 0.11
80 162 0.86
81 5 0.03
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCATGTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATT
TGTGCGAGATACTAA
Found at i:81974816 original size:120 final size:119
Alignment explanation
Indices: 81974586--81974831 Score: 291
Period size: 120 Copynumber: 2.1 Consensus size: 119
81974576 GGACTAAGAT
* *
81974586 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCCTTTGTGCGAGATACTA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTA
* * ** *
81974651 AATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
66 AATCCGGGCTAAGTCCCGAAGGCATGTGAACGAGATACTAAATCC-GGTTAAATC
* ** *
81974706 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT
** * * *
81974770 ACAA-CCGGGCTGTGTCCCGAAGGCATGTGAACGAGGA-GCTATATCCGGTTAAATT
65 A-AATCCGGGCTAAGTCCCGAAGGCATGTGAACGA-GATACTAAATCCGGTTAAATC
81974825 CCGAAGG
1 CCGAAGG
81974832 TACGTGATTT
Statistics
Matches: 107, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
119 15 0.14
120 88 0.82
121 4 0.04
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (119 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTA
AATCCGGGCTAAGTCCCGAAGGCATGTGAACGAGATACTAAATCCGGTTAAATC
Found at i:81975675 original size:91 final size:91
Alignment explanation
Indices: 81975518--81975699 Score: 346
Period size: 91 Copynumber: 2.0 Consensus size: 91
81975508 TAGTTGGTCC
81975518 ATGAAACCCCAAATTAGGTAAGGTTTACTTTGAAAACAGAAGCTGATAGCAGCAGTGGTATAGAT
1 ATGAAACCCCAAATTAGGTAAGGTTTACTTTGAAAACAGAAGCTGATAGCAGCAGTGGTATAGAT
81975583 TGGAAAAATCACAAGAATTCGTAGGA
66 TGGAAAAATCACAAGAATTCGTAGGA
* *
81975609 ATGAAACCCCAAATTAGGTAAGGTTTACTTTGAAAACAGAAGCTGATAGCAGCAGTGGTGTGGAT
1 ATGAAACCCCAAATTAGGTAAGGTTTACTTTGAAAACAGAAGCTGATAGCAGCAGTGGTATAGAT
81975674 TGGAAAAATCACAAGAATTCGTAGGA
66 TGGAAAAATCACAAGAATTCGTAGGA
81975700 GTAGAATTAA
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
91 89 1.00
ACGTcount: A:0.40, C:0.13, G:0.24, T:0.23
Consensus pattern (91 bp):
ATGAAACCCCAAATTAGGTAAGGTTTACTTTGAAAACAGAAGCTGATAGCAGCAGTGGTATAGAT
TGGAAAAATCACAAGAATTCGTAGGA
Found at i:81983822 original size:19 final size:20
Alignment explanation
Indices: 81983764--81983823 Score: 52
Period size: 21 Copynumber: 2.9 Consensus size: 20
81983754 ACAACTAATC
*
81983764 GAAAAAGAAGAAAACGAAGGA
1 GAAAAAGAAGAAGA-GAAGGA
*
81983785 GAAGAAA-AATGGAGAAGAAGG-
1 GAA-AAAGAA-GAAG-AGAAGGA
81983806 GAAAAAGAAGAAGAGAAG
1 GAAAAAGAAGAAGAGAAG
81983824 TTCGACAGCT
Statistics
Matches: 32, Mismatches: 3, Indels: 10
0.71 0.07 0.22
Matches are distributed among these distances:
19 5 0.16
20 6 0.19
21 10 0.31
22 10 0.31
23 1 0.03
ACGTcount: A:0.63, C:0.02, G:0.33, T:0.02
Consensus pattern (20 bp):
GAAAAAGAAGAAGAGAAGGA
Found at i:81989205 original size:38 final size:38
Alignment explanation
Indices: 81989150--81989231 Score: 130
Period size: 38 Copynumber: 2.2 Consensus size: 38
81989140 ATCTAAAGTA
*
81989150 ATAA-ATACTTAATCAAAATTGTACCTTTTCGATTCGT
1 ATAAGATACTTAATCAAAATTGTACCTTTTCGATTCAT
**
81989187 ATAAGATACTTAATCAAAATTGTACCTTTTCTTTTCAT
1 ATAAGATACTTAATCAAAATTGTACCTTTTCGATTCAT
81989225 ATAAGAT
1 ATAAGAT
81989232 GAATTTTTTG
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
37 4 0.10
38 37 0.90
ACGTcount: A:0.37, C:0.15, G:0.07, T:0.41
Consensus pattern (38 bp):
ATAAGATACTTAATCAAAATTGTACCTTTTCGATTCAT
Found at i:81997769 original size:46 final size:46
Alignment explanation
Indices: 81997719--81997894 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
81997709 TGTTTGGGCA
*
81997719 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
81997765 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * * *
81997812 TCTGAACTCGTTGAGTTGAGTCAGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
81997858 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81997895 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 60 0.58
47 27 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:81997874 original size:93 final size:93
Alignment explanation
Indices: 81997715--81997887 Score: 274
Period size: 93 Copynumber: 1.9 Consensus size: 93
81997705 AGGATGTTTG
* * * *
81997715 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCAGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAG
*
81997780 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCAAGTTCGTGAGATGTAACTA
* * *
81997808 GGCATCTGAACTCGTTGAGTTGAGTCAGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCAGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAG
81997873 TTGAGTCCAAGTTCG
66 TTGAGTCCAAGTTCG
81997888 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCAGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCAAGTTCGTGAGATGTAACTA
Found at i:82011706 original size:39 final size:39
Alignment explanation
Indices: 82011663--82011782 Score: 95
Period size: 39 Copynumber: 3.1 Consensus size: 39
82011653 ACTAGTCTTG
82011663 CACTTGCACATATTTTACCGTGGCCTTTCCATTATCACA
1 CACTTGCACATATTTTACCGTGGCCTTTCCATTATCACA
* * * * * ** * ***
82011702 CACTT-TATCACA--TTGCCATAG-CTTAGCACTAGTCTTG
1 CACTTGCA-CATATTTTACCGTGGCCTTTCCATTA-TCACA
82011739 CACTTGCACATATTTTACCGTGGCCTTTCCATTATCACA
1 CACTTGCACATATTTTACCGTGGCCTTTCCATTATCACA
82011778 CACTT
1 CACTT
82011783 TATCACATTG
Statistics
Matches: 53, Mismatches: 22, Indels: 12
0.61 0.25 0.14
Matches are distributed among these distances:
36 7 0.13
37 16 0.30
38 2 0.04
39 21 0.40
40 7 0.13
ACGTcount: A:0.23, C:0.30, G:0.11, T:0.36
Consensus pattern (39 bp):
CACTTGCACATATTTTACCGTGGCCTTTCCATTATCACA
Found at i:82011707 original size:76 final size:76
Alignment explanation
Indices: 82011620--82011903 Score: 507
Period size: 76 Copynumber: 3.7 Consensus size: 76
82011610 ATTTGCCCTG
*
82011620 ATCATACACTTTATCACATTGCCATAGCTTAGCACTAGTCTTGCACTTGCACATATTTTACCGTG
1 ATCACACACTTTATCACATTGCCATAGCTTAGCACTAGTCTTGCACTTGCACATATTTTACCGTG
82011685 GCCTTTCCATT
66 GCCTTTCCATT
82011696 ATCACACACTTTATCACATTGCCATAGCTTAGCACTAGTCTTGCACTTGCACATATTTTACCGTG
1 ATCACACACTTTATCACATTGCCATAGCTTAGCACTAGTCTTGCACTTGCACATATTTTACCGTG
82011761 GCCTTTCCATT
66 GCCTTTCCATT
*
82011772 ATCACACACTTTATCACATTGCCATAGCTTAGCACTAGTCTTGCACTTGCAGATATTTTACCGTG
1 ATCACACACTTTATCACATTGCCATAGCTTAGCACTAGTCTTGCACTTGCACATATTTTACCGTG
82011837 GCCTTTCCATT
66 GCCTTTCCATT
* * *
82011848 ATCACACACTTTATCACATTGCCATAGCTTAGCTA-TGGTCTTACACTTACACATAT
1 ATCACACACTTTATCACATTGCCATAGCTTAGC-ACTAGTCTTGCACTTGCACATAT
82011904 ATGTAACTGC
Statistics
Matches: 201, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
76 200 1.00
77 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.12, T:0.36
Consensus pattern (76 bp):
ATCACACACTTTATCACATTGCCATAGCTTAGCACTAGTCTTGCACTTGCACATATTTTACCGTG
GCCTTTCCATT
Found at i:82022266 original size:40 final size:40
Alignment explanation
Indices: 82022117--82022302 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
82022107 TTGAATGATG
* * * *
82022117 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
82022157 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
82022197 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
82022237 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
82022278 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
82022303 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 119 0.92
41 9 0.07
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:82025016 original size:43 final size:44
Alignment explanation
Indices: 82024963--82025075 Score: 133
Period size: 43 Copynumber: 2.6 Consensus size: 44
82024953 AAACGCTGCC
82024963 AAAGAACATGACTTTTAGTGGCGTTTTTAGGAAAAATG-GT-GCT
1 AAAGAACATGACTTTTAGTGGCGTTTTTAGGAAAAA-GAGTCGCT
* * *
82025006 AAAGAACATGACTTTTAGCT-GCATTTTTTGGGAAAAGAGTCGCT
1 AAAGAACATGACTTTTAG-TGGCGTTTTTAGGAAAAAGAGTCGCT
* * *
82025050 AAAGGACGTGAATTTTAGTGGCGTTT
1 AAAGAACATGACTTTTAGTGGCGTTT
82025076 GTGGGGAAAG
Statistics
Matches: 59, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
42 1 0.02
43 34 0.58
44 24 0.41
ACGTcount: A:0.31, C:0.11, G:0.26, T:0.33
Consensus pattern (44 bp):
AAAGAACATGACTTTTAGTGGCGTTTTTAGGAAAAAGAGTCGCT
Found at i:82025083 original size:44 final size:43
Alignment explanation
Indices: 82024963--82025095 Score: 128
Period size: 43 Copynumber: 3.1 Consensus size: 43
82024953 AAACGCTGCC
* *
82024963 AAAGAACATGACTTTTAGTGGCGTTTTTAGGAAAAATGGT-GCT
1 AAAGAACATGAATTTTAGTGGCGTTTTTAGGGAAAA-GGTCGCT
* * *
82025006 AAAGAACATGACTTTTAGCT-GCATTTTTTGGGAAAAGAGTCGCT
1 AAAGAACATGAATTTTAG-TGGCGTTTTTAGGGAAAAG-GTCGCT
* * * *
82025050 AAAGGACGTGAATTTTAGTGGCGTTTGT-GGGGAAAGCGTCGCT
1 AAAGAACATGAATTTTAGTGGCGTTTTTAGGGAAAAG-GTCGCT
82025093 AAA
1 AAA
82025096 AGTCATGTTC
Statistics
Matches: 76, Mismatches: 10, Indels: 8
0.81 0.11 0.09
Matches are distributed among these distances:
42 1 0.01
43 50 0.66
44 25 0.33
ACGTcount: A:0.31, C:0.11, G:0.28, T:0.30
Consensus pattern (43 bp):
AAAGAACATGAATTTTAGTGGCGTTTTTAGGGAAAAGGTCGCT
Found at i:82025116 original size:43 final size:43
Alignment explanation
Indices: 82025069--82025234 Score: 158
Period size: 43 Copynumber: 3.9 Consensus size: 43
82025059 GAATTTTAGT
* *
82025069 GGCGTTTGTGGGGAAAGCGTCGCTAAAAGTCATGTTCTTTAAC
1 GGCGTTTGTGGGGAAAGCGCCGCTAAAGGTCATGTTCTTTAAC
*
82025112 GGCGTTTGT-GGGAAAGCGCCGCTAAAGGTTATGTTCTTTAAC
1 GGCGTTTGTGGGGAAAGCGCCGCTAAAGGTCATGTTCTTTAAC
** * * * * *
82025154 AACATTTGTGAGGAAAGTGCCCCTAAAGGTCATGTT-TTATAGC
1 GGCGTTTGTGGGGAAAGCGCCGCTAAAGGTCATGTTCTT-TAAC
* * * * *
82025197 GGCATTTTTGTGAGAAA-CGCCACTAAAGGTCATATTCT
1 GGCGTTTGTG-GGGAAAGCGCCGCTAAAGGTCATGTTCT
82025235 ATAGCTGCGT
Statistics
Matches: 100, Mismatches: 19, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
42 38 0.38
43 57 0.57
44 5 0.05
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.31
Consensus pattern (43 bp):
GGCGTTTGTGGGGAAAGCGCCGCTAAAGGTCATGTTCTTTAAC
Found at i:82027171 original size:13 final size:13
Alignment explanation
Indices: 82027155--82027184 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
82027145 AATTTTAAAT
82027155 TATTGTGTTAACA
1 TATTGTGTTAACA
*
82027168 TATTGTTTTAACA
1 TATTGTGTTAACA
82027181 TATT
1 TATT
82027185 ATTTCAATAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.07, G:0.10, T:0.53
Consensus pattern (13 bp):
TATTGTGTTAACA
Found at i:82027635 original size:13 final size:13
Alignment explanation
Indices: 82027617--82027644 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
82027607 TTAACTTCAG
82027617 ACGATATTGATCC
1 ACGATATTGATCC
82027630 ACGATATTGATCC
1 ACGATATTGATCC
82027643 AC
1 AC
82027645 CCATCGAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (13 bp):
ACGATATTGATCC
Found at i:82040644 original size:39 final size:41
Alignment explanation
Indices: 82040566--82040644 Score: 108
Period size: 39 Copynumber: 2.0 Consensus size: 41
82040556 TTGTATGCAT
**
82040566 ACTGTATCTGAGATGGGCTAAGGCCCTAATTTATATCTGAG
1 ACTGTATCTGAGATGGGCTAAGGCCCTAAACTATATCTGAG
* *
82040607 ACTGTATCTGA-ATGGGTTAAGG-CCTAAACTGTATCTGA
1 ACTGTATCTGAGATGGGCTAAGGCCCTAAACTATATCTGA
82040645 ATCCGTAATG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
39 13 0.38
40 10 0.29
41 11 0.32
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (41 bp):
ACTGTATCTGAGATGGGCTAAGGCCCTAAACTATATCTGAG
Found at i:82044683 original size:18 final size:18
Alignment explanation
Indices: 82044662--82044699 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
82044652 CAAAACTTAG
82044662 CACCTAGCCCATAATCAT
1 CACCTAGCCCATAATCAT
82044680 CACCTAGCCCATAATCAT
1 CACCTAGCCCATAATCAT
82044698 CA
1 CA
82044700 TGATAATCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.34, C:0.39, G:0.05, T:0.21
Consensus pattern (18 bp):
CACCTAGCCCATAATCAT
Found at i:82045267 original size:14 final size:13
Alignment explanation
Indices: 82045234--82045258 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82045224 ACCAAACCAA
82045234 AAAATAACAAAAT
1 AAAATAACAAAAT
82045247 AAAATAACAAAA
1 AAAATAACAAAA
82045259 ATCCAATAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.08, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAATAACAAAAT
Found at i:82050885 original size:26 final size:26
Alignment explanation
Indices: 82050851--82050902 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
82050841 TTTACAGCAC
82050851 ATGTATTCTATAAAATTCAAAATTTT
1 ATGTATTCTATAAAATTCAAAATTTT
82050877 ATGTATTCTATAAAATTCAAAATTTT
1 ATGTATTCTATAAAATTCAAAATTTT
82050903 TCTTCAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.08, G:0.04, T:0.46
Consensus pattern (26 bp):
ATGTATTCTATAAAATTCAAAATTTT
Found at i:82055228 original size:245 final size:245
Alignment explanation
Indices: 82054798--82055290 Score: 632
Period size: 245 Copynumber: 2.0 Consensus size: 245
82054788 TCGGCTAGGG
* * * *
82054798 GTGGTAATGGTATAGGCCTTGGACAGAGGGCACCAGGCAGAGGTGCTAGTCAGATAGAGGTGAGA
1 GTGGTAATGGTATAGGCCGTGGACAGAGGGCACCAGGCAGAGGTGCTAGTCAAACAGAGGCGAGA
* * * * *
82054863 CAGCCTGTACTGGATTATGCTGCTCGACAATAAGAGGATAGAGATGCTCCTGATGTTATCACAGG
66 CAGCCTGCACTGCATTATGCTGCTCAACAACAAGAGGATAGAGATGCTACTGATGTTATCACAGG
* * * **
82054928 TACGTTCTTTATTTTTTATGTTCTTATACTGTTTTGATCGACATAGGTTCTACACACTCCTATAT
131 TACGTTCTTTATTTTTTATGTCCTCATACTGCTTTGATAAACATAGGTTCTACACACTCCTATAT
* * * **
82054993 AACTAGTATTATTTCTGAAAACTTGGAGATTTTTGTTGAGAGCACTTCTA
196 AACTAGTATTATTTCTAAAAACCTAGAGATTTTAATTGAGAGCACTTCTA
* * *
82055043 GTGGTAATGGTATGGGCCGTGGACAG-GGAGCACCGGGCAGAGGTGCTAGTCAAACAGATGCGAG
1 GTGGTAATGGTATAGGCCGTGGACAGAGG-GCACCAGGCAGAGGTGCTAGTCAAACAGAGGCGAG
* * * * * * **
82055107 GCAGCCTGCACT-CATTTATGCTGCTCAACACCGAGATGATAGAGATGGTATTGATGTTATCATG
65 ACAGCCTGCACTGCA-TTATGCTGCTCAACAACAAGAGGATAGAGATGCTACTGATGTTATCACA
*
82055171 GGTACGTTCTTTA-TTTTTATGTACCTCATACTGCTTTGATAAACATAGGTTCTACACACTTCTA
129 GGTACGTTCTTTATTTTTTATGT-CCTCATACTGCTTTGATAAACATAGGTTCTACACACTCCTA
* * *
82055235 TGTAACTAGTATTGTTTCTAAAAACCTAGAGATTTTAATTGAGATCACTTCTA
193 TATAACTAGTATTATTTCTAAAAACCTAGAGATTTTAATTGAGAGCACTTCTA
82055288 GTG
1 GTG
82055291 AGATTGCTTT
Statistics
Matches: 211, Mismatches: 34, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
244 12 0.06
245 199 0.94
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (245 bp):
GTGGTAATGGTATAGGCCGTGGACAGAGGGCACCAGGCAGAGGTGCTAGTCAAACAGAGGCGAGA
CAGCCTGCACTGCATTATGCTGCTCAACAACAAGAGGATAGAGATGCTACTGATGTTATCACAGG
TACGTTCTTTATTTTTTATGTCCTCATACTGCTTTGATAAACATAGGTTCTACACACTCCTATAT
AACTAGTATTATTTCTAAAAACCTAGAGATTTTAATTGAGAGCACTTCTA
Found at i:82063002 original size:54 final size:54
Alignment explanation
Indices: 82062911--82063053 Score: 232
Period size: 54 Copynumber: 2.6 Consensus size: 54
82062901 TTTACAATAT
* *
82062911 TTCTCCAAAGCCTATATTATATACATAAGAAGCATAAATGAAATAAAACTATAC
1 TTCTCCAAAGTCTATATTATATACATAAGAAGTATAAATGAAATAAAACTATAC
* *
82062965 TTCTCCAAAGTCTATATTATATACATAATAAGTATAAATGAAATAAAATTATAC
1 TTCTCCAAAGTCTATATTATATACATAAGAAGTATAAATGAAATAAAACTATAC
* *
82063019 TTCTTCAAAGTCTGTATTATATACATAAGAAGTAT
1 TTCTCCAAAGTCTATATTATATACATAAGAAGTAT
82063054 CTTGATCCAT
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 82 1.00
ACGTcount: A:0.45, C:0.13, G:0.08, T:0.34
Consensus pattern (54 bp):
TTCTCCAAAGTCTATATTATATACATAAGAAGTATAAATGAAATAAAACTATAC
Found at i:82064778 original size:14 final size:14
Alignment explanation
Indices: 82064759--82064788 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
82064749 TGTTTGCCAG
*
82064759 TAAAATATTTTTCT
1 TAAAATATTTTCCT
82064773 TAAAATATTTTCCT
1 TAAAATATTTTCCT
82064787 TA
1 TA
82064789 TTTTACAGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.53
Consensus pattern (14 bp):
TAAAATATTTTCCT
Found at i:82064955 original size:28 final size:29
Alignment explanation
Indices: 82064922--82064983 Score: 85
Period size: 28 Copynumber: 2.2 Consensus size: 29
82064912 CATTTTTCTC
*
82064922 CACTCTCA-TCACAGCAGTCGTTCTCCTT
1 CACTCTCATTCACAACAGTCGTTCTCCTT
*
82064950 CACTCT-ATTCACAATAGTCGTTCTCCTT
1 CACTCTCATTCACAACAGTCGTTCTCCTT
82064978 C-CTCTC
1 CACTCTC
82064984 TGTCCATCAG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 5 0.17
28 25 0.83
ACGTcount: A:0.18, C:0.39, G:0.08, T:0.35
Consensus pattern (29 bp):
CACTCTCATTCACAACAGTCGTTCTCCTT
Found at i:82066893 original size:10 final size:10
Alignment explanation
Indices: 82066878--82066909 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
82066868 TAAATACATT
82066878 TAATTAAAGA
1 TAATTAAAGA
82066888 TAATTAAAGA
1 TAATTAAAGA
82066898 TAATTAAA-A
1 TAATTAAAGA
82066907 TAA
1 TAA
82066910 AATCCTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (10 bp):
TAATTAAAGA
Found at i:82066954 original size:15 final size:15
Alignment explanation
Indices: 82066934--82066963 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
82066924 ATAATCCTAA
82066934 TAATTATCTTAATAT
1 TAATTATCTTAATAT
82066949 TAATTATCTTAATAT
1 TAATTATCTTAATAT
82066964 AAATAAAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (15 bp):
TAATTATCTTAATAT
Found at i:82072244 original size:53 final size:53
Alignment explanation
Indices: 82072163--82072318 Score: 228
Period size: 53 Copynumber: 3.0 Consensus size: 53
82072153 GACGAAAAAT
* *
82072163 ATGTGATAAGTGTG-C-CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCA
1 ATGTGATAA-TGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTACA
82072215 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTACA
1 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTACA
* * *
82072268 ATGTGATAATGTGATTCCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTA
1 ATGTGATAATGTGACTCCGTATAAGACCATAG-CTGGGCTATGGCATCGGTA
82072319 TGATATGTGA
Statistics
Matches: 96, Mismatches: 5, Indels: 5
0.91 0.05 0.05
Matches are distributed among these distances:
51 4 0.04
52 11 0.11
53 81 0.84
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (53 bp):
ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTACA
Found at i:82074348 original size:38 final size:38
Alignment explanation
Indices: 82074296--82074394 Score: 121
Period size: 38 Copynumber: 2.6 Consensus size: 38
82074286 TTGAGATTTA
*
82074296 ATGGCATTAGCGGCG-TTTTTAAAAAAGTGCCGCTAATAG
1 ATGGCATTAGCGGCGCTTTTTAAAAAA-CGCCG-TAATAG
*
82074335 -TGGCATTAGCGGCGCTTTTTGAAAAACGCCGTAATAG
1 ATGGCATTAGCGGCGCTTTTTAAAAAACGCCGTAATAG
*
82074372 ATTGAGTATTAGCGGCGCTTTTT
1 A-TG-GCATTAGCGGCGCTTTTT
82074395 GATAAATGCC
Statistics
Matches: 53, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
37 6 0.11
38 18 0.34
39 12 0.23
40 17 0.32
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.31
Consensus pattern (38 bp):
ATGGCATTAGCGGCGCTTTTTAAAAAACGCCGTAATAG
Found at i:82074383 original size:40 final size:39
Alignment explanation
Indices: 82074297--82074396 Score: 125
Period size: 40 Copynumber: 2.6 Consensus size: 39
82074287 TGAGATTTAA
* *
82074297 TGGCATTAGCGGCG-TTTTTAAAAAAGTGCCGCTAATAG
1 TGGCATTAGCGGCGCTTTTTGAAAAAGCGCCGCTAATAG
82074335 TGGCATTAGCGGCGCTTTTTGAAAAA-CGCCG-TAATAG
1 TGGCATTAGCGGCGCTTTTTGAAAAAGCGCCGCTAATAG
*
82074372 ATTGAGTATTAGCGGCGCTTTTTGA
1 --TG-GCATTAGCGGCGCTTTTTGA
82074397 TAAATGCCAC
Statistics
Matches: 55, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
37 6 0.11
38 18 0.33
39 12 0.22
40 19 0.35
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (39 bp):
TGGCATTAGCGGCGCTTTTTGAAAAAGCGCCGCTAATAG
Found at i:82074959 original size:22 final size:22
Alignment explanation
Indices: 82074914--82074975 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
82074904 CTATAGGCCT
82074914 TAAAT-CTCAAAC-CTTAAACTA
1 TAAATCCT-AAACTCTTAAACTA
82074935 TAAATCCTAAACTCTTAAA-TCA
1 TAAATCCTAAACTCTTAAACT-A
* *
82074957 TAAACCCTAAAATCTTAAA
1 TAAATCCTAAACTCTTAAA
82074976 AATAAATTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
21 10 0.28
22 26 0.72
ACGTcount: A:0.48, C:0.23, G:0.00, T:0.29
Consensus pattern (22 bp):
TAAATCCTAAACTCTTAAACTA
Found at i:82075444 original size:41 final size:42
Alignment explanation
Indices: 82075355--82075459 Score: 113
Period size: 41 Copynumber: 2.5 Consensus size: 42
82075345 TTTAAAATTT
* * * *
82075355 AAGTTCAAGGTTTAGGGTATTGGGTTTAGAATTTAGTTTATA
1 AAGTTTAAGGATTAGGGTATTGGGTTTAGAATCTAGTCTATA
**
82075397 AAGTTTAAGGATT-GGGTATTGGGTTTAGGGTCTAGTCTATA
1 AAGTTTAAGGATTAGGGTATTGGGTTTAGAATCTAGTCTATA
** * *
82075438 TGGTTTAGGGTTTAGGGTATTG
1 AAGTTTAAGGATTAGGGTATTG
82075460 TGCATTTGGT
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
41 33 0.63
42 19 0.37
ACGTcount: A:0.24, C:0.03, G:0.31, T:0.42
Consensus pattern (42 bp):
AAGTTTAAGGATTAGGGTATTGGGTTTAGAATCTAGTCTATA
Found at i:82075964 original size:84 final size:84
Alignment explanation
Indices: 82075851--82076043 Score: 298
Period size: 84 Copynumber: 2.3 Consensus size: 84
82075841 GGTAGTGGAT
* * *
82075851 TTAGTGGTGCTATCTTATAAACGCCACTAATAATATGAAAAATCGAATGAAAACTACGTCGTTTT
1 TTAGTGGCGCTACCTTATAAACGCCACTAAGAATATGAAAAATCGAATGAAAACTACGTCGTTTT
*
82075916 ATGTGGCGCAGTTTAGAAA
66 ATGTGGCACAGTTTAGAAA
*
82075935 TTAGTGGCGCTACCTTATAAACGCCACTAAGAATATGAGAAATCGAATGAAAACTACGTCGTTTT
1 TTAGTGGCGCTACCTTATAAACGCCACTAAGAATATGAAAAATCGAATGAAAACTACGTCGTTTT
* *
82076000 ATGTGGCACGGTTTAGGAA
66 ATGTGGCACAGTTTAGAAA
*
82076019 TTAGTGGCGCTATCC-TAAAAACGCC
1 TTAGTGGCGCTA-CCTTATAAACGCC
82076044 GCAAAAAAAT
Statistics
Matches: 100, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
84 98 0.98
85 2 0.02
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (84 bp):
TTAGTGGCGCTACCTTATAAACGCCACTAAGAATATGAAAAATCGAATGAAAACTACGTCGTTTT
ATGTGGCACAGTTTAGAAA
Found at i:82077896 original size:12 final size:13
Alignment explanation
Indices: 82077879--82077907 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
82077869 TTAGTTAATC
82077879 TTTTTTTTTC-TT
1 TTTTTTTTTCATT
82077891 TTTTTTTTTCATT
1 TTTTTTTTTCATT
82077904 TTTT
1 TTTT
82077908 AAATTACTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.03, C:0.07, G:0.00, T:0.90
Consensus pattern (13 bp):
TTTTTTTTTCATT
Found at i:82079450 original size:9 final size:9
Alignment explanation
Indices: 82079427--82079502 Score: 71
Period size: 9 Copynumber: 8.1 Consensus size: 9
82079417 ATTGATCATT
*
82079427 ACTTAAATA
1 ACTTACATA
*
82079436 AATTACATA
1 ACTTACATA
82079445 ACTTACATA
1 ACTTACATA
* *
82079454 ACTCATATA
1 ACTTACATA
82079463 ACTTACATA
1 ACTTACATA
*
82079472 ATTTACATAACA
1 ACTTACAT---A
82079484 ACTTACATA
1 ACTTACATA
*
82079493 ACTCACATA
1 ACTTACATA
82079502 A
1 A
82079503 TTTCCTTAAA
Statistics
Matches: 54, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
9 46 0.85
12 8 0.15
ACGTcount: A:0.49, C:0.20, G:0.00, T:0.32
Consensus pattern (9 bp):
ACTTACATA
Found at i:82079488 original size:21 final size:21
Alignment explanation
Indices: 82079444--82079502 Score: 70
Period size: 21 Copynumber: 3.0 Consensus size: 21
82079434 TAAATTACAT
*
82079444 AACTTACATAACT--CAT-AT
1 AACTTACATAACTCACATAAC
* *
82079462 AACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAAC
82079483 AACTTACATAACTCACATAA
1 AACTTACATAACTCACATAA
82079503 TTTCCTTAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
18 12 0.35
20 3 0.09
21 19 0.56
ACGTcount: A:0.47, C:0.22, G:0.00, T:0.31
Consensus pattern (21 bp):
AACTTACATAACTCACATAAC
Found at i:82085042 original size:21 final size:21
Alignment explanation
Indices: 82085012--82085062 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
82085002 TCAACTTAGA
*
82085012 GCGGAGGCAGCAGCGAGGGAG
1 GCGGAAGCAGCAGCGAGGGAG
82085033 GCGGAAGCAGCAGCGAGGGAG
1 GCGGAAGCAGCAGCGAGGGAG
82085054 GCGG-AGCAG
1 GCGGAAGCAG
82085063 AACAGAAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 5 0.17
21 24 0.83
ACGTcount: A:0.25, C:0.20, G:0.55, T:0.00
Consensus pattern (21 bp):
GCGGAAGCAGCAGCGAGGGAG
Found at i:82086394 original size:27 final size:26
Alignment explanation
Indices: 82086364--82086426 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
82086354 AGATAATTAA
82086364 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
82086391 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
82086418 AATATAAAT
1 AATA-AAAT
82086427 AAAATGGAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 19 0.66
28 10 0.34
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:82086413 original size:15 final size:15
Alignment explanation
Indices: 82086393--82086422 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
82086383 ATAATCCTAA
*
82086393 TAATTATCTTAATAT
1 TAATTATCCTAATAT
82086408 TAATTATCCTAATAT
1 TAATTATCCTAATAT
82086423 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:82088206 original size:13 final size:14
Alignment explanation
Indices: 82088177--82088214 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
82088167 CTAGAAAAGT
82088177 AAATTATTTTTTAA
1 AAATTATTTTTTAA
*
82088191 AAATTATTTTTCAA
1 AAATTATTTTTTAA
*
82088205 AAAATATTTT
1 AAATTATTTT
82088215 ATTGACAAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (14 bp):
AAATTATTTTTTAA
Found at i:82089543 original size:11 final size:11
Alignment explanation
Indices: 82089529--82089576 Score: 64
Period size: 11 Copynumber: 4.5 Consensus size: 11
82089519 TCAATATTCC
82089529 CTCAAATTTCT
1 CTCAAATTTCT
82089540 CTCAAA--TCT
1 CTCAAATTTCT
82089549 CTCAAATTTCT
1 CTCAAATTTCT
* *
82089560 CTTAAATTCCT
1 CTCAAATTTCT
82089571 CTCAAA
1 CTCAAA
82089577 ACTCTCGTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
9 9 0.28
11 23 0.72
ACGTcount: A:0.31, C:0.29, G:0.00, T:0.40
Consensus pattern (11 bp):
CTCAAATTTCT
Found at i:82089547 original size:31 final size:31
Alignment explanation
Indices: 82089512--82089582 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
82089502 TTTCAATCTG
* *
82089512 AAATCTTTC-AATATTCCCTCAAATTTCTCTC
1 AAATCTCTCAAAT-TTCCCTCAAATTCCTCTC
* *
82089543 AAATCTCTCAAATTTCTCTTAAATTCCTCTC
1 AAATCTCTCAAATTTCCCTCAAATTCCTCTC
*
82089574 AAAACTCTC
1 AAATCTCTC
82089583 GTTAATTTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
31 31 0.91
32 3 0.09
ACGTcount: A:0.31, C:0.30, G:0.00, T:0.39
Consensus pattern (31 bp):
AAATCTCTCAAATTTCCCTCAAATTCCTCTC
Found at i:82089552 original size:20 final size:22
Alignment explanation
Indices: 82089519--82089576 Score: 77
Period size: 20 Copynumber: 2.7 Consensus size: 22
82089509 CTGAAATCTT
82089519 TCAATATTCC-CTCAAATTTCTC
1 TCAA-ATTCCTCTCAAATTTCTC
82089541 TCAAA-T-CTCTCAAATTTCTC
1 TCAAATTCCTCTCAAATTTCTC
*
82089561 TTAAATTCCTCTCAAA
1 TCAAATTCCTCTCAAA
82089577 ACTCTCGTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
19 1 0.03
20 17 0.53
21 2 0.06
22 12 0.38
ACGTcount: A:0.31, C:0.29, G:0.00, T:0.40
Consensus pattern (22 bp):
TCAAATTCCTCTCAAATTTCTC
Found at i:82089637 original size:14 final size:15
Alignment explanation
Indices: 82089603--82089638 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
82089593 TCAAAAAAGC
*
82089603 TCTAATTTTATTTTT
1 TCTAAATTTATTTTT
82089618 TCTAAATTTATTTTT
1 TCTAAATTTATTTTT
82089633 T-TAAAT
1 TCTAAAT
82089639 AAAAAGATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 5 0.25
15 15 0.75
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.67
Consensus pattern (15 bp):
TCTAAATTTATTTTT
Found at i:82090663 original size:7 final size:7
Alignment explanation
Indices: 82090651--82090677 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
82090641 TAGTGGATTC
82090651 GTATTTA
1 GTATTTA
82090658 GTATTTA
1 GTATTTA
82090665 GTATTTA
1 GTATTTA
82090672 GTATTT
1 GTATTT
82090678 TTTATTTAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.15, T:0.59
Consensus pattern (7 bp):
GTATTTA
Found at i:82091216 original size:30 final size:30
Alignment explanation
Indices: 82091176--82091240 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
82091166 GACGACGCAA
*
82091176 GCCCATCAACAGCG-CCCACACAATCACCCG
1 GCCCAGCAACAG-GACCCACACAATCACCCG
* * *
82091206 GCCCAGCAACAGGACCTACACAGTCACCGG
1 GCCCAGCAACAGGACCCACACAATCACCCG
82091236 GCCCA
1 GCCCA
82091241 ACAGTTCAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 1 0.03
30 29 0.97
ACGTcount: A:0.29, C:0.46, G:0.18, T:0.06
Consensus pattern (30 bp):
GCCCAGCAACAGGACCCACACAATCACCCG
Found at i:82091321 original size:18 final size:18
Alignment explanation
Indices: 82091294--82091331 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
82091284 TGCCAGGTAC
* *
82091294 GTATCCTAGCCCTTTTAT
1 GTATCATAGCCCTTATAT
82091312 GTATCATAGCCCTTATAT
1 GTATCATAGCCCTTATAT
82091330 GT
1 GT
82091332 TTCCTTTTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.21, C:0.24, G:0.13, T:0.42
Consensus pattern (18 bp):
GTATCATAGCCCTTATAT
Found at i:82091917 original size:61 final size:58
Alignment explanation
Indices: 82091735--82092036 Score: 191
Period size: 61 Copynumber: 5.2 Consensus size: 58
82091725 TTTTGAATCT
*
82091735 TTTTATATTATTTCATGTAATTAGATAAAAAGTTGTTTTAAATAAAGTAATTGTAATTTAC
1 TTTTATATTATTTCATGTAA-TA-AT-AAAAGTTGTTTTAAATAAAGTAATTATAATTTAC
* * * * * * * *
82091796 TTTTATATT-TTT-A-ATAA-AATGGAAA-TTATTTAAAATAAGGCAACATTTTGAA--TAT
1 TTTTATATTATTTCATGTAATAAT-AAAAGTTGTTTTAAATAAAG-TA-ATTAT-AATTTAC
*
82091851 TTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAATTGTAATTTAC
1 TTTTATATTATTTCATGTAA-TA-ATAAAA-GTTGTTTTAAATAAAGTAATTATAATTTAC
* * * * * * *
82091912 TTTTATATT-TTTGA--TAA-AATGGAAA-TTATTTTAAATAAGGCAACATTTTGAA--TAT
1 TTTTATATTATTTCATGTAATAAT-AAAAGTTGTTTTAAATAAAG-TA-ATTAT-AATTTAC
*
82091967 TTTTATATTATTTCATGTGATAATATAAAATGTTGTTTTAAATAAAGTAATTATAATTTAC
1 TTTTATATTATTTCATGTAAT-A-ATAAAA-GTTGTTTTAAATAAAGTAATTATAATTTAC
82092028 TTTTATATT
1 TTTTATATT
82092037 TTAATAAAAT
Statistics
Matches: 182, Mismatches: 32, Indels: 54
0.68 0.12 0.20
Matches are distributed among these distances:
54 25 0.14
55 31 0.17
56 20 0.11
57 5 0.03
58 11 0.06
59 5 0.03
60 23 0.13
61 37 0.20
62 25 0.14
ACGTcount: A:0.39, C:0.03, G:0.10, T:0.48
Consensus pattern (58 bp):
TTTTATATTATTTCATGTAATAATAAAAGTTGTTTTAAATAAAGTAATTATAATTTAC
Found at i:82091929 original size:116 final size:116
Alignment explanation
Indices: 82091721--82092102 Score: 649
Period size: 116 Copynumber: 3.3 Consensus size: 116
82091711 TATTTGTACA
*
82091721 AACATTTTGAATCTTTTTATATTATTTCATGTAATTAGATAAAAAGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAAGTTGTTTTAAATAAAGTAAT
*
82091786 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTAAAATAAGGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
*
82091837 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAAGTTGTTTTAAATAAAGTAAT
*
82091902 TGTAATTTACTTTTATATTTTTGATAAAATGGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
* * * *
82091953 AACATTTTGAATATTTTTATATTATTTCATGTGATAATATAAAATGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAAGTTGTTTTAAATAAAGTAAT
* * *
82092018 TATAATTTACTTTTATA-TTTTAATAAAATGAAAATTATTTTAAATAAAGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
*
82092068 AATATTTTGAATATTTTTATATTATTTCATGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAAT
82092103 AAAATATAAA
Statistics
Matches: 252, Mismatches: 14, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
115 63 0.25
116 189 0.75
ACGTcount: A:0.40, C:0.04, G:0.09, T:0.47
Consensus pattern (116 bp):
AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAAGTTGTTTTAAATAAAGTAAT
TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
Found at i:82095357 original size:126 final size:126
Alignment explanation
Indices: 82095119--82095655 Score: 783
Period size: 126 Copynumber: 4.3 Consensus size: 126
82095109 GCCTAAGTTA
* * * * * *
82095119 TTTCAGAAACCACTGTAGCAAAATATCGTCTACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAA
* ***
82095184 TGCATCCTGCTTGAAGTGTTTTTGACACTATTTATGCAGACACGTCTTCTCAAAATTATTT
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCACAGACACGTCTTCTCAAAATTATTT
* * * * *
82095245 TTCCAGAGACCATTGTAGCAAAAGAGCATCCACGTGGGAGCTTC-TTCTAGTAATTTTGCTGGA-
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTC-AGTACTTTTGCT-GAC
*
82095308 AATGCATCCTGCTTGAAGCGTTTTT-ACCACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
64 AATGCATCCTGCTTGAAGCGTTTTTGA-CACTATTTGCACAGACACGTCTTCTCAAAATTATTT
* * *
82095371 TTTCAGAGACTATTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTACTGACAA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAA
* * *
82095436 TGCATCATGCTTGAAGCGTTTTTTACACTATTTGCACAAACACGTCTTCTCAAAATTATTT
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCACAGACACGTCTTCTCAAAATTATTT
* *
82095497 TTTCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTTAGTACTTTTGCTGACAA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAA
* * *
82095562 TACATCCTGCTTGAAGCGTTTTTGACACTATTTGCACAGACACGTCTTCTTAAATTTATTT
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCACAGACACGTCTTCTCAAAATTATTT
82095623 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCAC
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCAC
82095656 ATAGAAGCTT
Statistics
Matches: 373, Mismatches: 32, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
125 6 0.02
126 361 0.97
127 6 0.02
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (126 bp):
TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAA
TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCACAGACACGTCTTCTCAAAATTATTT
Found at i:82095757 original size:15 final size:15
Alignment explanation
Indices: 82095737--82095766 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
82095727 TTTTTTAAAT
82095737 ACCCTAAAACCCTAA
1 ACCCTAAAACCCTAA
*
82095752 ACCCTAAAATCCTAA
1 ACCCTAAAACCCTAA
82095767 TCTAATTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (15 bp):
ACCCTAAAACCCTAA
Found at i:82095908 original size:95 final size:98
Alignment explanation
Indices: 82095708--82095945 Score: 279
Period size: 95 Copynumber: 2.4 Consensus size: 98
82095698 CCTAAACCCC
* *
82095708 AAACCCTAATTTATTTGATTTTTTTAAATACCCTAAAACCCTAAACCCTAAAATCCTAATCTAAT
1 AAACCCTAATTTATTTGA-TTTTTT---T-CCCTAAAACCATAAACACTAAAATCCTAATCTAAT
* ** **
82095773 TTTTTTAAAATTTATAATTAATTTACTCAAGTAATTCT
61 TTTTTTAAAATTTATAATTAATTTAATCAACAAACACT
82095811 AAACCCTAATTTATTTGA-TTTTTTCCCTAAAACCATAAACACT-AAA-CCATAATCTAA-TTTT
1 AAACCCTAATTTATTTGATTTTTTTCCCTAAAACCATAAACACTAAAATCC-TAATCTAATTTTT
*
82095872 TTAAAA-TTAGTAATTAATTTAATTAACAAACACT
65 TTAAAATTTA-TAATTAATTTAATCAACAAACACT
* * *
82095906 AAACCCTAATTTATTTAATTTTTTTCCTTAAAACCTTAAA
1 AAACCCTAATTTATTTGATTTTTTTCCCTAAAACCATAAA
82095946 ATTTAAAAAC
Statistics
Matches: 121, Mismatches: 11, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
94 3 0.02
95 47 0.39
96 30 0.25
97 17 0.14
98 1 0.01
101 5 0.04
103 18 0.15
ACGTcount: A:0.40, C:0.17, G:0.02, T:0.41
Consensus pattern (98 bp):
AAACCCTAATTTATTTGATTTTTTTCCCTAAAACCATAAACACTAAAATCCTAATCTAATTTTTT
TAAAATTTATAATTAATTTAATCAACAAACACT
Found at i:82097511 original size:5 final size:5
Alignment explanation
Indices: 82097503--82097542 Score: 53
Period size: 5 Copynumber: 7.8 Consensus size: 5
82097493 TTATTTTATT
* *
82097503 TTTTC TTTTC TTCTC TTTTC TTTTC TTTTT TTTTC ATTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC -TTTT
82097543 GAATTTTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
5 26 0.87
6 4 0.13
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTC
Found at i:82103817 original size:12 final size:12
Alignment explanation
Indices: 82103790--82103823 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
82103780 TTATTTTAGG
82103790 CTTA-GTTTTCT
1 CTTAGGTTTTCT
82103801 C-TAGGTTTTCT
1 CTTAGGTTTTCT
82103812 CTTAGGTTTTCT
1 CTTAGGTTTTCT
82103824 TCCTCTTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 2 0.10
11 9 0.43
12 10 0.48
ACGTcount: A:0.09, C:0.18, G:0.15, T:0.59
Consensus pattern (12 bp):
CTTAGGTTTTCT
Found at i:82105880 original size:18 final size:18
Alignment explanation
Indices: 82105853--82105889 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
82105843 CCATACTACG
*
82105853 TTTGATCCCCCGAATGAC
1 TTTGACCCCCCGAATGAC
*
82105871 TTTGACCCCCTGAATGAC
1 TTTGACCCCCCGAATGAC
82105889 T
1 T
82105890 AAGTTATTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.32, G:0.16, T:0.30
Consensus pattern (18 bp):
TTTGACCCCCCGAATGAC
Found at i:82107113 original size:21 final size:22
Alignment explanation
Indices: 82107079--82107131 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
82107069 AAATAAATTA
* * **
82107079 TTTTAATATCTAGATATTATAT
1 TTTTTATATCTAGAAAGAATAT
82107101 TTTTTATAT-TAGAAAGAATAT
1 TTTTTATATCTAGAAAGAATAT
82107122 TGTTTTATAT
1 T-TTTTATAT
82107132 ACTTATAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 10 0.38
22 16 0.62
ACGTcount: A:0.36, C:0.02, G:0.08, T:0.55
Consensus pattern (22 bp):
TTTTTATATCTAGAAAGAATAT
Found at i:82107217 original size:25 final size:20
Alignment explanation
Indices: 82107170--82107212 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 20
82107160 TGATATAGTT
82107170 ATTAATAAATATAAAAATAA
1 ATTAATAAATATAAAAATAA
82107190 ATTAATACAATATTTAAAAATAA
1 ATTAATA-AATA--TAAAAATAA
82107213 TAATTTTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 7 0.35
21 4 0.20
23 9 0.45
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (20 bp):
ATTAATAAATATAAAAATAA
Found at i:82108736 original size:51 final size:51
Alignment explanation
Indices: 82108681--82108785 Score: 167
Period size: 51 Copynumber: 2.1 Consensus size: 51
82108671 TGCAATACAC
* *
82108681 ATACAAAC-AGATTAATTTATCCAATTTAATTTAATAAATTATTAAAAATAA
1 ATACAAACTA-ATTAATTTATCCAATTCAATTAAATAAATTATTAAAAATAA
*
82108732 ATACAAACTATTTAATTTATCCAATTCAATTAAATAAATTATTAAAAATAA
1 ATACAAACTAATTAATTTATCCAATTCAATTAAATAAATTATTAAAAATAA
82108783 ATA
1 ATA
82108786 AAATCAGTTC
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
51 49 0.98
52 1 0.02
ACGTcount: A:0.53, C:0.09, G:0.01, T:0.37
Consensus pattern (51 bp):
ATACAAACTAATTAATTTATCCAATTCAATTAAATAAATTATTAAAAATAA
Found at i:82109349 original size:3 final size:3
Alignment explanation
Indices: 82109341--82109372 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
82109331 GCTCCTAACA
82109341 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
82109373 AGCATTGGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:82112869 original size:12 final size:12
Alignment explanation
Indices: 82112849--82112878 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
82112839 AACCATAATT
*
82112849 AATATATTATTA
1 AATAAATTATTA
82112861 AATAAATTATTA
1 AATAAATTATTA
82112873 AATAAA
1 AATAAA
82112879 ATATAATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
AATAAATTATTA
Found at i:82130681 original size:30 final size:30
Alignment explanation
Indices: 82130647--82130725 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 30
82130637 AGCCGAAGCT
* * *
82130647 ATCCCTGTTCATTATTTGATGGTTGTCACC
1 ATCCCTTTTCATTATTTGATGGTCGCCACC
*
82130677 ATCCCTTTTCATT-GTTGATGGTCGCCACC
1 ATCCCTTTTCATTATTTGATGGTCGCCACC
* *
82130706 ATCACTTTTCATAATTTGAT
1 ATCCCTTTTCATTATTTGAT
82130726 AGCTGAAGCT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
29 24 0.59
30 17 0.41
ACGTcount: A:0.19, C:0.24, G:0.14, T:0.43
Consensus pattern (30 bp):
ATCCCTTTTCATTATTTGATGGTCGCCACC
Found at i:82130777 original size:30 final size:30
Alignment explanation
Indices: 82130711--82130777 Score: 98
Period size: 30 Copynumber: 2.2 Consensus size: 30
82130701 CCACCATCAC
* * *
82130711 TTTTCATAATTTGATAGCTGAAGCTATCCC
1 TTTTCATAATTCGATAGCTGAAGATATCCA
*
82130741 TGTTCATAATTCGATAGCTGAAGATATCCA
1 TTTTCATAATTCGATAGCTGAAGATATCCA
82130771 TTTTCAT
1 TTTTCAT
82130778 TGTTCGATGG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.40
Consensus pattern (30 bp):
TTTTCATAATTCGATAGCTGAAGATATCCA
Found at i:82130822 original size:29 final size:30
Alignment explanation
Indices: 82130771--82130836 Score: 116
Period size: 29 Copynumber: 2.2 Consensus size: 30
82130761 AAGATATCCA
*
82130771 TTTTCATTGTTCGATGGTCATCACCACCCC
1 TTTTCATTGTTCGATGGTCATCACCAACCC
82130801 TTTTCATTGTT-GATGGTCATCACCAACCC
1 TTTTCATTGTTCGATGGTCATCACCAACCC
82130830 TTTTCAT
1 TTTTCAT
82130837 AATTCGATAG
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
29 24 0.69
30 11 0.31
ACGTcount: A:0.18, C:0.29, G:0.12, T:0.41
Consensus pattern (30 bp):
TTTTCATTGTTCGATGGTCATCACCAACCC
Found at i:82130835 original size:119 final size:119
Alignment explanation
Indices: 82130633--82130866 Score: 308
Period size: 119 Copynumber: 2.0 Consensus size: 119
82130623 TTTCATAGCA
* * * ** *
82130633 CGATAGCCGAAGCTATCCCTGTTCATTATTTGATGGTTGTCACCATCCCTTTTCATTGTTGATGG
1 CGATAGCCGAAGATATCCATGTTCATTATTCGATGGTCATCACCACCCCTTTTCATTGTTGATGG
* * *
82130698 TCGCCACCATCACTTTTCATAATTTGATA-GCTGAAGCTATCCCTGTTCATAATT
66 TCACCACCAACACTTTTCATAATTCGATAGGC-GAAGCTATCCCTGTTCATAATT
* * *
82130752 CGATAGCTGAAGATATCCATTTTCATTGTTCGATGGTCATCACCACCCCTTTTCATTGTTGATGG
1 CGATAGCCGAAGATATCCATGTTCATTATTCGATGGTCATCACCACCCCTTTTCATTGTTGATGG
* * * *
82130817 TCATCACCAACCCTTTTCATAATTCGATAGGCGAGGCTATCCCTTTTCAT
66 TCACCACCAACACTTTTCATAATTCGATAGGCGAAGCTATCCCTGTTCAT
82130867 TGTTTTAACA
Statistics
Matches: 98, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
119 96 0.98
120 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.37
Consensus pattern (119 bp):
CGATAGCCGAAGATATCCATGTTCATTATTCGATGGTCATCACCACCCCTTTTCATTGTTGATGG
TCACCACCAACACTTTTCATAATTCGATAGGCGAAGCTATCCCTGTTCATAATT
Found at i:82130985 original size:12 final size:12
Alignment explanation
Indices: 82130968--82130998 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
82130958 AAATAATAGC
82130968 ATTTAAAACATA
1 ATTTAAAACATA
*
82130980 ATTTAAAACATT
1 ATTTAAAACATA
82130992 ATTTAAA
1 ATTTAAA
82130999 TGTACAAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (12 bp):
ATTTAAAACATA
Found at i:82137668 original size:19 final size:19
Alignment explanation
Indices: 82137622--82137670 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
82137612 GTGACCTTTG
*
82137622 TTTTCAAATTTTTTAACTTT
1 TTTT-AAATTTTTTAACTTA
82137642 TTTCTAAATTTTTTGAA-TTA
1 TTT-TAAATTTTTT-AACTTA
82137662 TTTTAAATT
1 TTTTAAATT
82137671 AGTCCCGGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 6 0.23
20 17 0.65
21 3 0.12
ACGTcount: A:0.29, C:0.06, G:0.02, T:0.63
Consensus pattern (19 bp):
TTTTAAATTTTTTAACTTA
Found at i:82140828 original size:31 final size:29
Alignment explanation
Indices: 82140793--82140897 Score: 94
Period size: 31 Copynumber: 3.6 Consensus size: 29
82140783 GAGAATTATT
82140793 AAGTTTAGGTACCAAATTAGGAAAAAGTGTC
1 AAGTTTAGGTACCAAATTAGGAAAAA-T-TC
*
82140824 AAGTTT-GGATATCAAATTA-GACAAAA---
1 AAGTTTAGG-TACCAAATTAGGA-AAAATTC
*
82140850 AAGTTTAGGTACCAAATTAGAAAAAATTATC
1 AAGTTTAGGTACCAAATTAGGAAAAA-T-TC
*
82140881 AAGTTTAGATACCAAAT
1 AAGTTTAGGTACCAAAT
82140898 GTTATATTAA
Statistics
Matches: 61, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
26 19 0.31
27 3 0.05
30 4 0.07
31 35 0.57
ACGTcount: A:0.47, C:0.10, G:0.16, T:0.28
Consensus pattern (29 bp):
AAGTTTAGGTACCAAATTAGGAAAAATTC
Found at i:82146606 original size:16 final size:16
Alignment explanation
Indices: 82146560--82146604 Score: 65
Period size: 17 Copynumber: 2.8 Consensus size: 16
82146550 AAAATATAAG
82146560 AAAAAAACATAAATTAT
1 AAAAAAA-ATAAATTAT
82146577 AAAAAAAATTAAATT-T
1 AAAAAAAA-TAAATTAT
82146593 AAAAAAAATAAA
1 AAAAAAAATAAA
82146605 ATAATTGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
15 4 0.15
16 10 0.37
17 13 0.48
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (16 bp):
AAAAAAAATAAATTAT
Found at i:82151767 original size:21 final size:21
Alignment explanation
Indices: 82151750--82151800 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
82151740 CCATCGCTCG
82151750 TGCCTCTGCCTCTCTCGCTGC
1 TGCCTCTGCCTCTCTCGCTGC
* * *
82151771 AGCCGCTGCCTCTCTCTCTGC
1 TGCCTCTGCCTCTCTCGCTGC
82151792 TGCCTCTGC
1 TGCCTCTGC
82151801 TCTAAGTTGT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.02, C:0.47, G:0.20, T:0.31
Consensus pattern (21 bp):
TGCCTCTGCCTCTCTCGCTGC
Found at i:82157449 original size:9 final size:9
Alignment explanation
Indices: 82157437--82157653 Score: 134
Period size: 9 Copynumber: 23.6 Consensus size: 9
82157427 ATGATATATA
82157437 TTATGTAAG
1 TTATGTAAG
*
82157446 TTATGTAAT
1 TTATGTAAG
*
82157455 TTATGATATG
1 TTATG-TAAG
* * *
82157465 ATATAT-AT
1 TTATGTAAG
*
82157473 TTATGTAAA
1 TTATGTAAG
* *
82157482 TTATAT-AT
1 TTATGTAAG
*
82157490 TTATCTAAG
1 TTATGTAAG
*
82157499 TTATATAAG
1 TTATGTAAG
82157508 TTATGTAAG
1 TTATGTAAG
*
82157517 TTATGTAAA
1 TTATGTAAG
*
82157526 TTATGATATAAAA
1 TTATG---T-AAG
*
82157539 TATATTTAAG
1 T-TATGTAAG
82157549 TATTATGTAAG
1 --TTATGTAAG
82157560 TTATGTAAG
1 TTATGTAAG
* *
82157569 TTATAT-AT
1 TTATGTAAG
*
82157577 TTATCTAAG
1 TTATGTAAG
*
82157586 TTATATAAG
1 TTATGTAAG
*
82157595 TTATGTATG
1 TTATGTAAG
*
82157604 TTATATAAG
1 TTATGTAAG
82157613 TTATGTAAG
1 TTATGTAAG
* *
82157622 TTATATATG
1 TTATGTAAG
*
82157631 TTATATAAG
1 TTATGTAAG
*
82157640 TTATGTAAA
1 TTATGTAAG
82157649 TTATG
1 TTATG
82157654 ATATCAAATA
Statistics
Matches: 162, Mismatches: 35, Indels: 22
0.74 0.16 0.10
Matches are distributed among these distances:
8 16 0.10
9 122 0.75
10 7 0.04
11 8 0.05
12 2 0.01
13 4 0.02
14 3 0.02
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:82157466 original size:35 final size:36
Alignment explanation
Indices: 82157421--82157634 Score: 181
Period size: 35 Copynumber: 6.1 Consensus size: 36
82157411 ACTAGTTATG
*
82157421 TATGATATGATATATA-TTATGTAAGTTATGTAATT
1 TATGATATGATATATATTTATGTAAGTTATGTAAGT
* * *
82157456 TATGATATGATATATATTTATGTAAATTATAT-ATT
1 TATGATATGATATATATTTATGTAAGTTATGTAAGT
* * * * *
82157491 TAT-CTAAGTTATATAAGTTATGTAAGTTATGTAAAT
1 TATGATATGATATAT-ATTTATGTAAGTTATGTAAGT
* * *
82157527 TATGATATAAAATATATTTAAGT-A-TTATGTAAGT
1 TATGATATGATATATATTTATGTAAGTTATGTAAGT
* * * *
82157561 TATG-TAAGTTATATATTTATCTAAGTTATATAAGT
1 TATGATATGATATATATTTATGTAAGTTATGTAAGT
* * * *
82157596 TATG-TATGTTATATAAGTTATGTAAGTTATATATGT
1 TATGATATGATATAT-ATTTATGTAAGTTATGTAAGT
82157632 TAT
1 TAT
82157635 ATAAGTTATG
Statistics
Matches: 144, Mismatches: 28, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
33 12 0.08
34 22 0.15
35 59 0.41
36 45 0.31
37 6 0.04
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (36 bp):
TATGATATGATATATATTTATGTAAGTTATGTAAGT
Found at i:82157516 original size:18 final size:18
Alignment explanation
Indices: 82157437--82157653 Score: 162
Period size: 18 Copynumber: 12.3 Consensus size: 18
82157427 ATGATATATA
* *
82157437 TTATGTAAGTTATGTAAT
1 TTATGTAAGTTATATAAG
* * *
82157455 TTATGATATGATATAT-AT
1 TTATG-TAAGTTATATAAG
* *
82157473 TTATGTAAATTATAT-AT
1 TTATGTAAGTTATATAAG
*
82157490 TTATCTAAGTTATATAAG
1 TTATGTAAGTTATATAAG
* *
82157508 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATATAAG
*
82157526 TTATG--A--TATA-AAA
1 TTATGTAAGTTATATAAG
* *
82157539 TATATTTAAGTATTATGTAAG
1 T-TATGTAAG--TTATATAAG
*
82157560 TTATGTAAGTTATAT-AT
1 TTATGTAAGTTATATAAG
*
82157577 TTATCTAAGTTATATAAG
1 TTATGTAAGTTATATAAG
*
82157595 TTATGTATGTTATATAAG
1 TTATGTAAGTTATATAAG
*
82157613 TTATGTAAGTTATATATG
1 TTATGTAAGTTATATAAG
* * *
82157631 TTATATAAGTTATGTAAA
1 TTATGTAAGTTATATAAG
82157649 TTATG
1 TTATG
82157654 ATATCAAATA
Statistics
Matches: 158, Mismatches: 30, Indels: 22
0.75 0.14 0.10
Matches are distributed among these distances:
13 4 0.03
14 6 0.04
16 2 0.01
17 37 0.23
18 89 0.56
19 7 0.04
20 10 0.06
21 3 0.02
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (18 bp):
TTATGTAAGTTATATAAG
Found at i:82157553 original size:114 final size:120
Alignment explanation
Indices: 82157435--82157684 Score: 325
Period size: 123 Copynumber: 2.1 Consensus size: 120
82157425 ATATGATATA
* *
82157435 TATTATGTAAGTTATGTAA-TT-TATGA-TA-T-GATATAT-ATTTATGTAAATTATAT-ATTTA
1 TATTATGTAAGTTATGTAAGTTATAT-ATTACTAGATATATAAGTTATGTAAATTATATAAGTTA
*
82157493 TCTAAGTTATATAAGTTATGTAAGTTATGTAAATTATGATATAAAATATATTTAAG
65 TCTAAGTTATATAAGTTATATAAGTTATGTAAATTATGATATAAAATATATTTAAG
* **
82157549 TATTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTATGTTATATAAGT
1 TATTATGTAAGTTATGTAAGTTATATA-TTA-CT-AGATATATAAGTTATGTAAATTATATAAGT
* * * *
82157614 TATGTAAGTTATATATGTTATATAAGTTATGTAAATTATGATATCAAATATATTTATG
63 TATCTAAGTTATATAAGTTATATAAGTTATGTAAATTATGATATAAAATATATTTAAG
82157672 TATTATGTAAGTT
1 TATTATGTAAGTT
82157685 TTTTATTTCA
Statistics
Matches: 116, Mismatches: 10, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
114 19 0.16
115 3 0.03
116 3 0.03
117 2 0.02
119 1 0.01
121 6 0.05
122 14 0.12
123 68 0.59
ACGTcount: A:0.38, C:0.01, G:0.12, T:0.48
Consensus pattern (120 bp):
TATTATGTAAGTTATGTAAGTTATATATTACTAGATATATAAGTTATGTAAATTATATAAGTTAT
CTAAGTTATATAAGTTATATAAGTTATGTAAATTATGATATAAAATATATTTAAG
Found at i:82157778 original size:15 final size:15
Alignment explanation
Indices: 82157758--82157813 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
82157748 AAGTAGCGGG
82157758 ATTAAATAATATTTA
1 ATTAAATAATATTTA
82157773 ATTAAATAATATTT-
1 ATTAAATAATATTTA
82157787 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
82157802 ATTAAATAATAT
1 ATTAAATAATAT
82157814 ACGTGTCGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
12 2 0.06
13 6 0.17
14 4 0.11
15 16 0.44
16 6 0.17
17 2 0.06
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:82158018 original size:24 final size:24
Alignment explanation
Indices: 82157990--82158057 Score: 102
Period size: 24 Copynumber: 2.8 Consensus size: 24
82157980 ACTTAAATGG
82157990 TAAAACGGACGATAATATTTGTAA
1 TAAAACGGACGATAATATTTGTAA
*
82158014 TAAAACGGA-GAATAATATTTGTGA
1 TAAAACGGACG-ATAATATTTGTAA
*
82158038 TAAAACGGACGAGAATATTT
1 TAAAACGGACGATAATATTT
82158058 CAATAATAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
23 1 0.03
24 38 0.95
25 1 0.03
ACGTcount: A:0.46, C:0.07, G:0.19, T:0.28
Consensus pattern (24 bp):
TAAAACGGACGATAATATTTGTAA
Found at i:82158830 original size:373 final size:373
Alignment explanation
Indices: 82158145--82159432 Score: 2531
Period size: 373 Copynumber: 3.5 Consensus size: 373
82158135 AATTGAAACA
82158145 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
82158210 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
*
82158275 AATAAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAA
131 AATAAGATTGGAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAA
82158340 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATA
196 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATA
82158405 TAATAATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTAT
261 TAATAATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTAT
82158470 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
326 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
82158518 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
82158583 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
82158648 AATAAGATTGGAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAA
131 AATAAGATTGGAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAA
82158713 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATA
196 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATA
82158778 TAATAATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTAT
261 TAATAATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTAT
82158843 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
326 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
82158891 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
*
82158956 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATTTACTTTGAATCTTTAAAATATTTAA
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
82159021 AATAAGATTGGAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAA
131 AATAAGATTGGAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAA
82159086 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATA
196 GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATA
82159151 TAATAATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTAT
261 TAATAATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTAT
82159216 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
326 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
82159264 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
1 TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
82159329 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
66 CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
* * *
82159394 AACAAGGTTGGAGAGAAAGTCAGCTATTGTTGTAATTTT
131 AATAAGATTGGAGAGAAGGTCAGCTATTGTTGTAATTTT
82159433 AATGGACAAG
Statistics
Matches: 909, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
373 909 1.00
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (373 bp):
TTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTG
CAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAA
AATAAGATTGGAGAGAAGGTCAGCTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAA
GAAATTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATA
TAATAATATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTAT
ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTT
Found at i:82162876 original size:14 final size:15
Alignment explanation
Indices: 82162852--82162881 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
82162842 CACAAACTTC
82162852 AGAATTTATGTATTT
1 AGAATTTATGTATTT
82162867 AGAA-TTATGTATTT
1 AGAATTTATGTATTT
82162881 A
1 A
82162882 TATAAACACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (15 bp):
AGAATTTATGTATTT
Found at i:82165238 original size:41 final size:40
Alignment explanation
Indices: 82165193--82165301 Score: 110
Period size: 41 Copynumber: 2.6 Consensus size: 40
82165183 AACTTTTTGC
* *
82165193 GGCGTTTGGACCAAAAACACCGCTATTAATCAGTTTTTAGT
1 GGCGTTTGGA-CAAAAACACCACAATTAATCAGTTTTTAGT
* * * *
82165234 GGCGTTTTGGATAAAAACGCCACAATTGATCAGTTTTTTGT
1 GGCG-TTTGGACAAAAACACCACAATTAATCAGTTTTTAGT
* * *
82165275 GGCGTTTGGGAAAAAAACGCCGCAATT
1 GGCGTTT-GGACAAAAACACCACAATT
82165302 TAGTGGCATT
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
40 3 0.05
41 49 0.84
42 6 0.10
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.30
Consensus pattern (40 bp):
GGCGTTTGGACAAAAACACCACAATTAATCAGTTTTTAGT
Found at i:82165323 original size:72 final size:71
Alignment explanation
Indices: 82165228--82165368 Score: 185
Period size: 72 Copynumber: 2.0 Consensus size: 71
82165218 TTAATCAGTT
* * *
82165228 TTTAGTGGCGTTTTGGATAAAAACGCCACAATTGATCAGTTTTTTGTGGCGTTTGGGAAAAAAAC
1 TTTAGTGGCGATTTGGATAAAAACGCCACAATTGATCAGCTTTTAGTGGCGTTT-GGAAAAAAAC
82165293 GCCGCAA
65 GCCGCAA
* * * * *
82165300 TTTAGTGGC-ATTTGAGATTAAAACGCCGCTATTGATCAGCTTTTAGTGGCGTTTTGATAAAAAC
1 TTTAGTGGCGATTTG-GATAAAAACGCCACAATTGATCAGCTTTTAGTGGCGTTTGGAAAAAAAC
82165364 GCCGC
65 GCCGC
82165369 TATTGACCAG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
71 17 0.28
72 43 0.72
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (71 bp):
TTTAGTGGCGATTTGGATAAAAACGCCACAATTGATCAGCTTTTAGTGGCGTTTGGAAAAAAACG
CCGCAA
Found at i:82165367 original size:40 final size:40
Alignment explanation
Indices: 82165300--82165434 Score: 162
Period size: 41 Copynumber: 3.3 Consensus size: 40
82165290 AACGCCGCAA
* * *
82165300 TTTAGTGGCATTTGAGATTAAAACGCCGCTATTGATCAGCT
1 TTTAGTGGCGTTT-TGATAAAAACGCCGCTATTGATCAGCT
* *
82165341 TTTAGTGGCGTTTTGATAAAAACGCCGCTATTGACCAGTT
1 TTTAGTGGCGTTTTGATAAAAACGCCGCTATTGATCAGCT
** * * *
82165381 TTTAGTGGCGTTTTTGGCAAAAACGCCGCTATAGTTTAGCT
1 TTTAGTGGCG-TTTTGATAAAAACGCCGCTATTGATCAGCT
82165422 TTTAGTGGCGTTT
1 TTTAGTGGCGTTT
82165435 CGGACAAACG
Statistics
Matches: 81, Mismatches: 12, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
40 36 0.44
41 45 0.56
ACGTcount: A:0.23, C:0.16, G:0.24, T:0.37
Consensus pattern (40 bp):
TTTAGTGGCGTTTTGATAAAAACGCCGCTATTGATCAGCT
Found at i:82165408 original size:41 final size:40
Alignment explanation
Indices: 82165319--82165434 Score: 151
Period size: 40 Copynumber: 2.9 Consensus size: 40
82165309 ATTTGAGATT
* *
82165319 AAAACGCCGCTATTGATCAGCTTTTAGTGGCGTTTTGATA
1 AAAACGCCGCTATTGACCAGCTTTTAGTGGCGTTTTGACA
* *
82165359 AAAACGCCGCTATTGACCAGTTTTTAGTGGCGTTTTTGGCA
1 AAAACGCCGCTATTGACCAGCTTTTAGTGGCG-TTTTGACA
* ***
82165400 AAAACGCCGCTATAGTTTAGCTTTTAGTGGCGTTT
1 AAAACGCCGCTATTGACCAGCTTTTAGTGGCGTTT
82165435 CGGACAAACG
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
40 33 0.50
41 33 0.50
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.35
Consensus pattern (40 bp):
AAAACGCCGCTATTGACCAGCTTTTAGTGGCGTTTTGACA
Found at i:82178306 original size:26 final size:25
Alignment explanation
Indices: 82178257--82178306 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
82178247 TTTTTCAAAA
*
82178257 TTTTAAATTTTTATATATTCTTTAT
1 TTTTAAATTTTTAAATATTCTTTAT
82178282 TTTTAAAATTTTTAAATTATT-TTTA
1 TTTT-AAATTTTTAAA-TATTCTTTA
82178307 AAATATAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 4 0.18
26 14 0.64
27 4 0.18
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (25 bp):
TTTTAAATTTTTAAATATTCTTTAT
Found at i:82181646 original size:19 final size:19
Alignment explanation
Indices: 82181622--82181661 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
82181612 TTAAGTAATT
82181622 GAGAGTTAAATTTAAAAAA
1 GAGAGTTAAATTTAAAAAA
82181641 GAGAGTTAAATTTAAAAAA
1 GAGAGTTAAATTTAAAAAA
82181660 GA
1 GA
82181662 AAAAGAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.17, T:0.25
Consensus pattern (19 bp):
GAGAGTTAAATTTAAAAAA
Found at i:82181664 original size:6 final size:6
Alignment explanation
Indices: 82181655--82181688 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
82181645 GTTAAATTTA
82181655 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAA
82181689 GATATAATGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAAAG
Done.