Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 248 of 276
Found at i:82185236 original size:16 final size:16
Alignment explanation
Indices: 82185215--82185246 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
82185205 TATGTTGCTA
82185215 AAATAAAGCTATCAAT
1 AAATAAAGCTATCAAT
82185231 AAATAAAGCTATCAAT
1 AAATAAAGCTATCAAT
82185247 CTTCTTACAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.12, G:0.06, T:0.25
Consensus pattern (16 bp):
AAATAAAGCTATCAAT
Found at i:82194383 original size:11 final size:11
Alignment explanation
Indices: 82194367--82194391 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
82194357 TTACATATAC
82194367 TAATAAAATAA
1 TAATAAAATAA
82194378 TAATAAAATAA
1 TAATAAAATAA
82194389 TAA
1 TAA
82194392 AATATCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:82194696 original size:31 final size:30
Alignment explanation
Indices: 82194661--82194719 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
82194651 CACCCTTAAA
*
82194661 ATATTTGCACTATT-AGCCCTTCAAATTTTTC
1 ATATTTACACT-TTAAGCCC-TCAAATTTTTC
*
82194692 ATATTTACACTTTAATCCCTCAAATTTT
1 ATATTTACACTTTAAGCCCTCAAATTTT
82194720 GATTATTTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 11 0.44
31 14 0.56
ACGTcount: A:0.29, C:0.22, G:0.03, T:0.46
Consensus pattern (30 bp):
ATATTTACACTTTAAGCCCTCAAATTTTTC
Found at i:82195637 original size:17 final size:18
Alignment explanation
Indices: 82195615--82195649 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
82195605 TATTCACTTA
*
82195615 TTAACT-CATTCTCAATT
1 TTAACTGCATTATCAATT
82195632 TTAACTGCATTATCAATT
1 TTAACTGCATTATCAATT
82195650 GTTCAACTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.20, G:0.03, T:0.46
Consensus pattern (18 bp):
TTAACTGCATTATCAATT
Found at i:82200323 original size:7 final size:7
Alignment explanation
Indices: 82200313--82200361 Score: 98
Period size: 7 Copynumber: 7.0 Consensus size: 7
82200303 TAAAATATTA
82200313 AATTTTT
1 AATTTTT
82200320 AATTTTT
1 AATTTTT
82200327 AATTTTT
1 AATTTTT
82200334 AATTTTT
1 AATTTTT
82200341 AATTTTT
1 AATTTTT
82200348 AATTTTT
1 AATTTTT
82200355 AATTTTT
1 AATTTTT
82200362 TTAAATATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 42 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (7 bp):
AATTTTT
Found at i:82200383 original size:9 final size:8
Alignment explanation
Indices: 82200310--82200387 Score: 76
Period size: 7 Copynumber: 9.9 Consensus size: 8
82200300 AACTAAAATA
82200310 TTAAATTT
1 TTAAATTT
82200318 TT-AATTT
1 TTAAATTT
82200325 TT-AATTT
1 TTAAATTT
82200332 TT-AATTT
1 TTAAATTT
82200339 TT-AATTT
1 TTAAATTT
82200346 TT-AATTT
1 TTAAATTT
*
82200353 TTAATTTTT
1 TTAA-ATTT
82200362 TTAAATATTT
1 TT-AA-ATTT
82200372 TTATAATTT
1 TTA-AATTT
82200381 TTAAATT
1 TTAAATT
82200388 AACATATAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
7 35 0.55
8 7 0.11
9 13 0.20
10 9 0.14
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (8 bp):
TTAAATTT
Found at i:82200639 original size:14 final size:15
Alignment explanation
Indices: 82200612--82200644 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
82200602 TTAAAAGTTA
*
82200612 GTTTTAGGACTTGGG
1 GTTTAAGGACTTGGG
82200627 GTTTAAGGA-TTGGG
1 GTTTAAGGACTTGGG
82200641 GTTT
1 GTTT
82200645 GGGTGTTAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.15, C:0.03, G:0.39, T:0.42
Consensus pattern (15 bp):
GTTTAAGGACTTGGG
Found at i:82200843 original size:66 final size:65
Alignment explanation
Indices: 82200668--82200844 Score: 182
Period size: 66 Copynumber: 2.7 Consensus size: 65
82200658 TACAGGTTGG
* ** * * *
82200668 AGTTTTAAGGGTTTATGATTTGAGATTTAGGGTTTAAGGTGTT-GGGATTAAGGTTTATCGTTTT
1 AGTTTTAAGGGTTTATGATTTGAGATTTAGGGTTT-AGGGGTTAAAGAGTAAGCTTTATCGTTTG
82200732 T
65 T
* * * *
82200733 AGTCTTAAGGGGTTATGATTTGAGATTTAGGGTGT-GGTGTTTAAAGAGTAA-CTAATTAGT-GT
1 AGTTTTAAGGGTTTATGATTTGAGATTTAGGGTTTAGG-GGTTAAAGAGTAAGCT--TTA-TCGT
82200795 TTGT
62 TTGT
*
82200799 AGTTTTAAGGGTTTATGATTAGAGATTTAGGGTTTAGGGGTTAAAG
1 AGTTTTAAGGGTTTATGATTTGAGATTTAGGGTTTAGGGGTTAAAG
82200845 GGTTATTGAT
Statistics
Matches: 91, Mismatches: 15, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
63 2 0.02
64 3 0.03
65 37 0.41
66 46 0.51
67 3 0.03
ACGTcount: A:0.25, C:0.02, G:0.31, T:0.43
Consensus pattern (65 bp):
AGTTTTAAGGGTTTATGATTTGAGATTTAGGGTTTAGGGGTTAAAGAGTAAGCTTTATCGTTTGT
Found at i:82201580 original size:40 final size:40
Alignment explanation
Indices: 82201508--82201593 Score: 104
Period size: 40 Copynumber: 2.1 Consensus size: 40
82201498 AGTTCTGCTT
* *
82201508 AATCTTTTAGCGGCGTTTTTAAGAAAGTGCCGCTAATGCTC
1 AATC-TTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATACTC
*
82201549 GATCTTTAGCGGCGCTTTCTTAA-AAA-CGCCGCTAATACTC
1 AATCTTTAGCGGCG-TTT-TTAAGAAAGCGCCGCTAATACTC
82201589 AATCT
1 AATCT
82201594 ATTCGATTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
40 26 0.67
41 9 0.23
42 4 0.10
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.33
Consensus pattern (40 bp):
AATCTTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATACTC
Found at i:82202878 original size:72 final size:72
Alignment explanation
Indices: 82202788--82202930 Score: 196
Period size: 72 Copynumber: 2.0 Consensus size: 72
82202778 TGCGAGCCTA
* ** *
82202788 TTGAAGACACCAACTGAAGACAGTAAGCCAAAGTGCGAGCCTGTCAAAGGTGTATGGTTGCAAGC
1 TTGAAGACACCAACTGAAGACAGTAAGCAAAAAAGCGAGCCTGTCAAAGGTGTATAGTTGCAAGC
82202853 AGCAAAG
66 AGCAAAG
*** * * *
82202860 TTGAAGACACCTGTTGAAGATAGTAAGCAAAAAAGTGAGCCTGTCAAAGGTGTATAGTTGCGAGC
1 TTGAAGACACCAACTGAAGACAGTAAGCAAAAAAGCGAGCCTGTCAAAGGTGTATAGTTGCAAGC
82202925 AGCAAA
66 AGCAAA
82202931 ATGCAAGCCC
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
72 61 1.00
ACGTcount: A:0.37, C:0.17, G:0.27, T:0.19
Consensus pattern (72 bp):
TTGAAGACACCAACTGAAGACAGTAAGCAAAAAAGCGAGCCTGTCAAAGGTGTATAGTTGCAAGC
AGCAAAG
Found at i:82211470 original size:130 final size:131
Alignment explanation
Indices: 82211236--82211496 Score: 497
Period size: 130 Copynumber: 2.0 Consensus size: 131
82211226 AGCAGAAAAG
82211236 AAAGATTTTTTATTGAAAAAAAAAGGAAGGTCTCACGTAGATCCAGTAAAGTCATGAACAATGTA
1 AAAGATTTTTTATTGAAAAAAAAAGGAAGGTCTCACGTAGATCCAGTAAAGTCATGAACAATGTA
*
82211301 GCGCCTCTAGTAAGTTCACCCTGGAAAACAGGGTCTTGAGGAAATCTACATCTCAATGAAATGGA
66 GCGCCTCAAGTAAGTTCACCCTGGAAAACAGGGTCTTGAGGAAATCTACATCTCAATGAAATGGA
82211366 T
131 T
*
82211367 AAAGATTTTTTATTG-AAAAAAAAGGGAGGTCTCACGTAGATCCAGTAAAGTCATGAACAATGTA
1 AAAGATTTTTTATTGAAAAAAAAAGGAAGGTCTCACGTAGATCCAGTAAAGTCATGAACAATGTA
82211431 GCGCCTCAAGTAAGTTCACCCTGGAAAACAGGGTCTTGAGGAAATCTACATCTCAATGAAATGGA
66 GCGCCTCAAGTAAGTTCACCCTGGAAAACAGGGTCTTGAGGAAATCTACATCTCAATGAAATGGA
82211496 T
131 T
82211497 TACTCATCAT
Statistics
Matches: 128, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
130 113 0.88
131 15 0.12
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (131 bp):
AAAGATTTTTTATTGAAAAAAAAAGGAAGGTCTCACGTAGATCCAGTAAAGTCATGAACAATGTA
GCGCCTCAAGTAAGTTCACCCTGGAAAACAGGGTCTTGAGGAAATCTACATCTCAATGAAATGGA
T
Found at i:82215845 original size:13 final size:13
Alignment explanation
Indices: 82215829--82215853 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82215819 AAAAGAGCTA
82215829 TGAAAAAGTGTTG
1 TGAAAAAGTGTTG
82215842 TGAAAAAGTGTT
1 TGAAAAAGTGTT
82215854 ATTTGTTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.28, T:0.32
Consensus pattern (13 bp):
TGAAAAAGTGTTG
Found at i:82218410 original size:24 final size:22
Alignment explanation
Indices: 82218370--82218434 Score: 64
Period size: 21 Copynumber: 3.1 Consensus size: 22
82218360 TAGGTAGTAG
82218370 AAAAAGAAGGAGAAGAAGAAAA
1 AAAAAGAAGGAGAAGAAGAAAA
* * *
82218392 AAAAAGAA-GAGGAGGAG-AAG
1 AAAAAGAAGGAGAAGAAGAAAA
**
82218412 AAGGAGAAGGAGAAG-AGAAAA
1 AAAAAGAAGGAGAAGAAGAAAA
82218433 AA
1 AA
82218435 TAGAGATGCT
Statistics
Matches: 34, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
20 10 0.29
21 16 0.47
22 8 0.24
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (22 bp):
AAAAAGAAGGAGAAGAAGAAAA
Found at i:82219488 original size:22 final size:22
Alignment explanation
Indices: 82219449--82219505 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
82219439 GGGAAGTTTG
* *
82219449 TAACTGAGTT-AGGGTAACCTC
1 TAACTGAGTTGGGGGTAACATC
*
82219470 TAACTGAGTTGGGGGTAACATG
1 TAACTGAGTTGGGGGTAACATC
*
82219492 TTACTGAGTTGGGG
1 TAACTGAGTTGGGG
82219506 CAACCACTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
21 10 0.32
22 21 0.68
ACGTcount: A:0.25, C:0.12, G:0.33, T:0.30
Consensus pattern (22 bp):
TAACTGAGTTGGGGGTAACATC
Found at i:82229959 original size:60 final size:61
Alignment explanation
Indices: 82229884--82230005 Score: 192
Period size: 60 Copynumber: 2.0 Consensus size: 61
82229874 CCAAGGTCTA
* * *
82229884 TTTGGGCTGGACGGCAAGGGGCATGAAATCAG-AGTAAAATTGATGAATTAAGGGCAAAAT
1 TTTGGGCTGAACGGCAAGGGGCACGAAATCAGCAGGAAAATTGATGAATTAAGGGCAAAAT
* *
82229944 TTTGGGCTTAACGGCAAGGGGCACGAAATCAGCAGGAAAATTGATGAATTAAGGGTAAAAT
1 TTTGGGCTGAACGGCAAGGGGCACGAAATCAGCAGGAAAATTGATGAATTAAGGGCAAAAT
82230005 T
1 T
82230006 GGAATATTGC
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
60 29 0.52
61 27 0.48
ACGTcount: A:0.37, C:0.11, G:0.30, T:0.22
Consensus pattern (61 bp):
TTTGGGCTGAACGGCAAGGGGCACGAAATCAGCAGGAAAATTGATGAATTAAGGGCAAAAT
Found at i:82231534 original size:51 final size:51
Alignment explanation
Indices: 82231458--82231621 Score: 283
Period size: 51 Copynumber: 3.2 Consensus size: 51
82231448 ACTTCTGATC
* *
82231458 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
1 AGTGATAAATGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
*
82231509 AGTGATAAATGATAAGTGGTAGCTTTAGCTACACTTATATGATCAATGACA
1 AGTGATAAATGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
* *
82231560 AGTGATAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAATGACA
1 AGTGATAAATGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
82231611 AGTGATAAATG
1 AGTGATAAATG
82231622 TGATCAATGT
Statistics
Matches: 106, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 106 1.00
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.31
Consensus pattern (51 bp):
AGTGATAAATGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACA
Found at i:82231652 original size:102 final size:99
Alignment explanation
Indices: 82231458--82231673 Score: 237
Period size: 102 Copynumber: 2.1 Consensus size: 99
82231448 ACTTCTGATC
*
82231458 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACAAGTGATAAATGATA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACAAGTGATAAATGATA
** **
82231523 AGTGGTAGCTTTAGCTACACTTATATGA-TCAATGACA
66 AGTGGTAGCCGTAGC-ACACGGATATGACTCAA--A-A
*
82231560 AGTGATAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAATGACAAGTGATAAATGTGA
1 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACAAGTGATAAA--TGA
82231625 TCAA-T-GTAAGACCGT-G-ACA-GGACTATGACTTCAAAA
64 T-AAGTGGT-AG-CCGTAGCACACGGA-TATGAC-TCAAAA
82231661 AGTGATAAGTGAT
1 AGTGATAAGTGAT
82231674 CATACGCAAG
Statistics
Matches: 100, Mismatches: 6, Indels: 17
0.81 0.05 0.14
Matches are distributed among these distances:
101 15 0.15
102 67 0.67
103 2 0.02
104 12 0.12
105 4 0.04
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.30
Consensus pattern (99 bp):
AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAATGACAAGTGATAAATGATA
AGTGGTAGCCGTAGCACACGGATATGACTCAAAA
Found at i:82232521 original size:17 final size:17
Alignment explanation
Indices: 82232499--82232538 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
82232489 TAAATAAAAT
82232499 AAAGAAC-AAGAACAGAG
1 AAAGAACGAA-AACAGAG
*
82232516 AAAGAACGAAAAGAGAG
1 AAAGAACGAAAACAGAG
82232533 AAAGAA
1 AAAGAA
82232539 AAAGTGAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 19 0.90
18 2 0.10
ACGTcount: A:0.68, C:0.07, G:0.25, T:0.00
Consensus pattern (17 bp):
AAAGAACGAAAACAGAG
Found at i:82245356 original size:21 final size:21
Alignment explanation
Indices: 82245316--82245356 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
82245306 TCAGTTCAGC
* *
82245316 CTCTTTTGCTTTAAGTTCCTT
1 CTCTCTTGCTTTAAGATCCTT
*
82245337 CTCTCTTGCTTTCAGATCCT
1 CTCTCTTGCTTTAAGATCCT
82245357 AGATTTGATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.29, G:0.10, T:0.51
Consensus pattern (21 bp):
CTCTCTTGCTTTAAGATCCTT
Found at i:82257787 original size:11 final size:11
Alignment explanation
Indices: 82257773--82257797 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
82257763 TGTAATAATT
82257773 TAAATCTAAAC
1 TAAATCTAAAC
82257784 TAAATCTAAAC
1 TAAATCTAAAC
82257795 TAA
1 TAA
82257798 TAAAACTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (11 bp):
TAAATCTAAAC
Found at i:82265292 original size:19 final size:21
Alignment explanation
Indices: 82265241--82265295 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
82265231 GGTGAATCAA
*
82265241 CTCTTACGAGCTTCTATTTAG
1 CTCTTACGAGCTTCTATTCAG
82265262 CTCTTACGAGCTTCTATTCAG
1 CTCTTACGAGCTTCTATTCAG
82265283 CT-TT-CGAGCTTCT
1 CTCTTACGAGCTTCT
82265296 GTTGGCATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
19 9 0.27
20 2 0.06
21 22 0.67
ACGTcount: A:0.16, C:0.27, G:0.15, T:0.42
Consensus pattern (21 bp):
CTCTTACGAGCTTCTATTCAG
Found at i:82265497 original size:20 final size:20
Alignment explanation
Indices: 82265472--82265519 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
82265462 AATGGAAGTT
82265472 GTGAATGACA-AGAATTGACA
1 GTGAATGACATAGAATTGA-A
*
82265492 GTGAATGACATGGAATTGAA
1 GTGAATGACATAGAATTGAA
*
82265512 ATGAATGA
1 GTGAATGA
82265520 TTTTATTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 18 0.72
21 7 0.28
ACGTcount: A:0.44, C:0.06, G:0.27, T:0.23
Consensus pattern (20 bp):
GTGAATGACATAGAATTGAA
Found at i:82267099 original size:39 final size:40
Alignment explanation
Indices: 82267018--82267117 Score: 116
Period size: 39 Copynumber: 2.5 Consensus size: 40
82267008 AGTTTAAGAC
* *
82267018 TTTAATTATGTCATAATCT-GAACATCTTTAATAAGGGTT
1 TTTAATTATGTCATAGTTTAGAACATCTTTAATAAGGGTT
* *
82267057 TTTAATTATGTCATAGTTTAGGACATCTTTAATATA-TG-T
1 TTTAATTATGTCATAGTTTAGAACATCTTTAATA-AGGGTT
* *
82267096 TTTAAATATGTCTTAGTTTAGA
1 TTTAATTATGTCATAGTTTAGA
82267118 TGTCTTTAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
39 37 0.71
40 14 0.27
41 1 0.02
ACGTcount: A:0.32, C:0.08, G:0.13, T:0.47
Consensus pattern (40 bp):
TTTAATTATGTCATAGTTTAGAACATCTTTAATAAGGGTT
Found at i:82267138 original size:39 final size:40
Alignment explanation
Indices: 82267039--82267138 Score: 109
Period size: 39 Copynumber: 2.5 Consensus size: 40
82267029 CATAATCTGA
* *
82267039 ACATCTTTAATA-AGGGTTTTTAATTATGTCATAGTTTAGG
1 ACATCTTTAATATA-TGTTTTTAAATATGTCATAGTTTAGG
*
82267079 ACATCTTTAATATATG-TTTTAAATATGTCTTAGTTTA-G
1 ACATCTTTAATATATGTTTTTAAATATGTCATAGTTTAGG
**
82267117 ATGTCTTTAATACT-TGTTTTTA
1 ACATCTTTAATA-TATGTTTTTA
82267139 GTTCAGACAA
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
38 13 0.25
39 25 0.48
40 13 0.25
41 1 0.02
ACGTcount: A:0.29, C:0.08, G:0.13, T:0.50
Consensus pattern (40 bp):
ACATCTTTAATATATGTTTTTAAATATGTCATAGTTTAGG
Found at i:82269416 original size:28 final size:29
Alignment explanation
Indices: 82269385--82269445 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
82269375 TCTGGAGGTG
*
82269385 TTTTCAAAAAT-GACCTATTCTCGTAATT
1 TTTTCAAAAATCGACCTATTCACGTAATT
* **
82269413 TTTTCTAAAATCGATTTATTCACGTAATT
1 TTTTCAAAAATCGACCTATTCACGTAATT
82269442 TTTT
1 TTTT
82269446 TCTGACATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 10 0.36
29 18 0.64
ACGTcount: A:0.30, C:0.15, G:0.07, T:0.49
Consensus pattern (29 bp):
TTTTCAAAAATCGACCTATTCACGTAATT
Found at i:82270582 original size:21 final size:21
Alignment explanation
Indices: 82270556--82270609 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
82270546 TTTATGTTTC
* *
82270556 TTTTTTAGGTTTTGGGTTTTG
1 TTTTTTAGATTTCGGGTTTTG
*
82270577 TTTTTTCGATTTCGGGTTTTG
1 TTTTTTAGATTTCGGGTTTTG
* *
82270598 ATTTTTAAATTT
1 TTTTTTAGATTT
82270610 GAGTTTTAAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.11, C:0.04, G:0.20, T:0.65
Consensus pattern (21 bp):
TTTTTTAGATTTCGGGTTTTG
Found at i:82271562 original size:33 final size:33
Alignment explanation
Indices: 82271519--82271583 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
82271509 ATGCTTTTTA
*
82271519 ACTTTTTAAAAATA-TTATTGAGACAAAAAAAAG
1 ACTTTATAAAAATACTTATTGA-ACAAAAAAAAG
* *
82271552 ACTTTATAAAAATACTTTTTTAACAAAAAAAA
1 ACTTTATAAAAATACTTATTGAACAAAAAAAA
82271584 CAGAAGGATA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 23 0.82
34 5 0.18
ACGTcount: A:0.55, C:0.08, G:0.05, T:0.32
Consensus pattern (33 bp):
ACTTTATAAAAATACTTATTGAACAAAAAAAAG
Found at i:82272547 original size:25 final size:23
Alignment explanation
Indices: 82272513--82272568 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 23
82272503 GTCACATTAG
*
82272513 TTTTCAACAAGAAAAATGAATGTAA
1 TTTTTAACAA-AAAAAT-AATGTAA
* *
82272538 TTTTTAACAAAAAACTAATTTAA
1 TTTTTAACAAAAAAATAATGTAA
*
82272561 TTATTAAC
1 TTTTTAAC
82272569 CCAACATATA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 13 0.48
24 5 0.19
25 9 0.33
ACGTcount: A:0.50, C:0.09, G:0.05, T:0.36
Consensus pattern (23 bp):
TTTTTAACAAAAAAATAATGTAA
Found at i:82272803 original size:14 final size:14
Alignment explanation
Indices: 82272784--82272810 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
82272774 AAACAGATTG
82272784 AAGAAAAAAAAAAA
1 AAGAAAAAAAAAAA
82272798 AAGAAAAAAAAAA
1 AAGAAAAAAAAAA
82272811 TCAAAGTCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (14 bp):
AAGAAAAAAAAAAA
Found at i:82273637 original size:3 final size:3
Alignment explanation
Indices: 82273629--82273666 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
82273619 TTTTTACCCT
*
82273629 TAA TAA TAA TAA TAA TAA TAA TAA TAC TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
82273667 TACATCATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:82274267 original size:28 final size:28
Alignment explanation
Indices: 82274168--82274277 Score: 70
Period size: 28 Copynumber: 4.0 Consensus size: 28
82274158 TAAGTTTATG
*
82274168 GTTCAA-GAGTTTGAGGTTTATGATTTGA
1 GTTCAATGA-TTTGGGGTTTATGATTTGA
* * *
82274196 GTTCAATG-TTTAAGGGTTT-TGGGTTATGG
1 GTTCAATGATTT-GGGGTTTAT-GATT-TGA
** *
82274225 GTT--ATGAACTCGGGTTTATGATTTGA
1 GTTCAATGATTTGGGGTTTATGATTTGA
82274251 GTTCAATGATTTGGGG-TTATGAGTTTG
1 GTTCAATGATTTGGGGTTTATGA-TTTG
82274278 GTGTTCATGT
Statistics
Matches: 61, Mismatches: 12, Indels: 18
0.67 0.13 0.20
Matches are distributed among these distances:
26 5 0.08
27 22 0.36
28 28 0.46
29 6 0.10
ACGTcount: A:0.21, C:0.05, G:0.31, T:0.44
Consensus pattern (28 bp):
GTTCAATGATTTGGGGTTTATGATTTGA
Found at i:82274751 original size:14 final size:14
Alignment explanation
Indices: 82274728--82274774 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
82274718 AAACCTAACC
82274728 AAATTATAAACACT
1 AAATTATAAACACT
* *
82274742 AAATTCTAAACCCT
1 AAATTATAAACACT
*
82274756 AAA-TATGAAATACT
1 AAATTAT-AAACACT
82274770 AAATT
1 AAATT
82274775 TTACTCAAGT
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
13 2 0.08
14 23 0.88
15 1 0.04
ACGTcount: A:0.53, C:0.15, G:0.02, T:0.30
Consensus pattern (14 bp):
AAATTATAAACACT
Found at i:82275886 original size:37 final size:37
Alignment explanation
Indices: 82275836--82275914 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
82275826 TTATTACGAA
* * *
82275836 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
82275873 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
82275910 GTCTT
1 GTCTT
82275915 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:82276111 original size:47 final size:47
Alignment explanation
Indices: 82276035--82276161 Score: 157
Period size: 47 Copynumber: 2.7 Consensus size: 47
82276025 CTTCGGGACT
* * * *
82276035 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
* * * *
82276082 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
*
82276129 TATCACATATATGCA-TGTTCACATCCATCACAT
1 TATCACATATATACACT-TTCACATCCATCACAT
82276162 AGAATCCTAA
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
46 1 0.01
47 67 0.99
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
Found at i:82285531 original size:46 final size:46
Alignment explanation
Indices: 82285481--82285653 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
82285471 TGGTTGAGCA
82285481 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
82285527 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
82285572 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
82285620 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
82285654 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:82285637 original size:93 final size:93
Alignment explanation
Indices: 82285478--82285648 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
82285468 GGATGGTTGA
* *
82285478 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
82285543 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
82285571 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
82285636 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
82285649 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:82292877 original size:137 final size:137
Alignment explanation
Indices: 82292631--82292904 Score: 480
Period size: 137 Copynumber: 2.0 Consensus size: 137
82292621 ATAAATATGA
* *
82292631 ATTGCTACCGAGTATCGGTTCACATATTCCATGGAAGACGACAAATGTGAGATCGAGGGAAAAAG
1 ATTGCTACCGAGTATCGATTCACATATTCCATGGAAGACGACAAATGTGAGATCGAAGGAAAAAG
82292696 CCCGTTTGAACCTGAGGAATAGATTAGGATACAAGTGACATGTCACTAGGATGGTTGAGCATCCA
66 CCCGTTTGAACCTGAGGAATAGATTAGGATACAAGTGACATGTCACTAGGATGGTTGAGCATCCA
82292761 AACTCGT
131 AACTCGT
*
82292768 ATTGCTACCGAGTATCGATTC-CGATATTCCATGGAAGACGGCAAATGTGAGATCGAAGGAAAAA
1 ATTGCTACCGAGTATCGATTCAC-ATATTCCATGGAAGACGACAAATGTGAGATCGAAGGAAAAA
82292832 GCCCGTTTGAACCAT-AGGAATAGATTAGGATACAAGTGACATGTCACTAGGATGGTTGAGCATC
65 GCCCGTTTGAACC-TGAGGAATAGATTAGGATACAAGTGACATGTCACTAGGATGGTTGAGCATC
*
82292896 CGAACTCGT
129 CAAACTCGT
82292905 TGAGTTGAGT
Statistics
Matches: 131, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
136 1 0.01
137 129 0.98
138 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.23
Consensus pattern (137 bp):
ATTGCTACCGAGTATCGATTCACATATTCCATGGAAGACGACAAATGTGAGATCGAAGGAAAAAG
CCCGTTTGAACCTGAGGAATAGATTAGGATACAAGTGACATGTCACTAGGATGGTTGAGCATCCA
AACTCGT
Found at i:82293009 original size:47 final size:47
Alignment explanation
Indices: 82292891--82293013 Score: 148
Period size: 46 Copynumber: 2.6 Consensus size: 47
82292881 GGATGGTTGA
*
82292891 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAAT
* *
82292939 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAA-T
82292982 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGT
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGT
82293014 ACCATGCTAA
Statistics
Matches: 67, Mismatches: 3, Indels: 11
0.83 0.04 0.14
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
45 3 0.04
46 29 0.43
47 27 0.40
48 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAAT
Found at i:82294331 original size:29 final size:29
Alignment explanation
Indices: 82294286--82294456 Score: 281
Period size: 29 Copynumber: 5.9 Consensus size: 29
82294276 CATGACTGTG
82294286 AATGTGATTTGGGCCTAATGGGCCATATA
1 AATGTGATTTGGGCCTAATGGGCCATATA
*
82294315 AATGTGATTTGGTCCTAATGGGCCATATA
1 AATGTGATTTGGGCCTAATGGGCCATATA
*
82294344 GATGTGATTTGGGCCTAATGGGCCATATA
1 AATGTGATTTGGGCCTAATGGGCCATATA
*
82294373 GATGTGATTTGGGCCTAATGGGCCATATA
1 AATGTGATTTGGGCCTAATGGGCCATATA
* *
82294402 GATGTGATTTGGGCCTAATGGGCCATATG
1 AATGTGATTTGGGCCTAATGGGCCATATA
*
82294431 AATGAGA-TTGGGCCTAATGGGCCATA
1 AATGTGATTTGGGCCTAATGGGCCATA
82294457 AGCATGTATG
Statistics
Matches: 136, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
28 19 0.14
29 117 0.86
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATGGGCCATATA
Found at i:82295407 original size:21 final size:21
Alignment explanation
Indices: 82295381--82295444 Score: 59
Period size: 21 Copynumber: 3.3 Consensus size: 21
82295371 AGAGAGTAAG
82295381 CATAAAGCTTACTAAGTTGCA
1 CATAAAGCTTACTAAGTTGCA
**
82295402 CATAAATATATAC-AA---G--
1 CATAAAGCT-TACTAAGTTGCA
82295418 CATAAAGCTTACTAAGTTGCA
1 CATAAAGCTTACTAAGTTGCA
82295439 CATAAA
1 CATAAA
82295445 TATATACACA
Statistics
Matches: 32, Mismatches: 4, Indels: 14
0.64 0.08 0.28
Matches are distributed among these distances:
15 3 0.09
16 9 0.28
18 1 0.03
19 1 0.03
21 15 0.47
22 3 0.09
ACGTcount: A:0.45, C:0.17, G:0.11, T:0.27
Consensus pattern (21 bp):
CATAAAGCTTACTAAGTTGCA
Found at i:82295428 original size:37 final size:37
Alignment explanation
Indices: 82295378--82295452 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
82295368 GAAAGAGAGT
82295378 AAGCATAAAGCTTACTAAGTTGCACATAAATATATAC
1 AAGCATAAAGCTTACTAAGTTGCACATAAATATATAC
82295415 AAGCATAAAGCTTACTAAGTTGCACATAAATATATAC
1 AAGCATAAAGCTTACTAAGTTGCACATAAATATATAC
82295452 A
1 A
82295453 CAACATCAAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.47, C:0.16, G:0.11, T:0.27
Consensus pattern (37 bp):
AAGCATAAAGCTTACTAAGTTGCACATAAATATATAC
Found at i:82298692 original size:47 final size:44
Alignment explanation
Indices: 82298577--82298706 Score: 136
Period size: 47 Copynumber: 2.8 Consensus size: 44
82298567 GTTATTTGTA
*
82298577 TGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAG
1 TGCTAGTGTAAGACATGTCTGGGACATGCATCGG-C-CATTACGAG
* * * * *
82298623 AGCCAGTGTAAGACCATATCTGGGACCTGGCATTGG-CATTGAAACGAG
1 TGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCATT---ACGAG
82298671 TGCTAGTGTAAGACATGTCTGGGACATGCATCGGCC
1 TGCTAGTGTAAGACATGTCTGGGACATGCATCGGCC
82298707 TCGAGACGTA
Statistics
Matches: 67, Mismatches: 11, Indels: 11
0.75 0.12 0.12
Matches are distributed among these distances:
45 4 0.06
46 17 0.25
47 25 0.37
48 21 0.31
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (44 bp):
TGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATTACGAG
Found at i:82298732 original size:46 final size:46
Alignment explanation
Indices: 82298581--82298844 Score: 173
Period size: 46 Copynumber: 5.6 Consensus size: 46
82298571 TTTGTATGCT
* * *
82298581 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-AACGAGAGCC
* * * * * * *
82298627 AGTGTAAGACCATATCTGGGACCTGGCATTGGCATTGAAACGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAAACGAGAGCC
*
82298675 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAACG-AGAGCC
* * * * *
82298721 AGTATAAGACATGTTTGGGACATGCATC-ACCT--ATAA-GATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-AACGA-GAGCC
* * * * *
82298765 AGTGTAACACTATGTCTGGGAGATGGCATTGGCCTC-AATGATGATAGCC
1 AGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCCTCGAA--ACGAGAGCC
*
82298814 AGTGTAAGACCATGTCCGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
82298845 ACAACTTACC
Statistics
Matches: 166, Mismatches: 37, Indels: 27
0.72 0.16 0.12
Matches are distributed among these distances:
42 1 0.01
43 2 0.01
44 11 0.07
45 14 0.08
46 54 0.33
47 29 0.17
48 23 0.14
49 29 0.17
50 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAACGAGAGCC
Found at i:82305185 original size:18 final size:18
Alignment explanation
Indices: 82305162--82305197 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
82305152 TTTTAACTAC
82305162 TTCCTTCAAGACAAAATT
1 TTCCTTCAAGACAAAATT
82305180 TTCCTTCAAGACAAAATT
1 TTCCTTCAAGACAAAATT
82305198 AAGTCTCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.22, G:0.06, T:0.33
Consensus pattern (18 bp):
TTCCTTCAAGACAAAATT
Found at i:82305766 original size:15 final size:15
Alignment explanation
Indices: 82305746--82305777 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
82305736 TTCTCATGGT
82305746 TAACTCACATTTTTG
1 TAACTCACATTTTTG
82305761 TAACTCACATTTTTG
1 TAACTCACATTTTTG
82305776 TA
1 TA
82305778 CATTAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.47
Consensus pattern (15 bp):
TAACTCACATTTTTG
Found at i:82307148 original size:27 final size:27
Alignment explanation
Indices: 82307118--82307550 Score: 451
Period size: 27 Copynumber: 16.0 Consensus size: 27
82307108 AAAGTACTCC
82307118 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
82307145 CGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** *
82307172 TGATTTTTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
82307199 C-AGTTTACAGAATTACCATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
** **
82307226 C-AGTTTGTAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
82307253 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** * *
82307280 CAATTTGTAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
82307307 TGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * * **
82307334 C-AGTTTATAGAATTAACATTTTATGCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
82307361 CGATTTACAGAATTATCGTTTTACCTTT
1 CGATTTACAGAATTACCGTTTTACC-CT
* **
82307389 AGA-TTACAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
82307415 CGATTTACAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
82307442 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
82307469 CGATTTATAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
82307496 CGGTTTACAAAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
82307523 CGATTTACAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
82307550 C
1 C
82307551 AATTGTGAAA
Statistics
Matches: 333, Mismatches: 67, Indels: 12
0.81 0.16 0.03
Matches are distributed among these distances:
26 5 0.02
27 323 0.97
28 5 0.02
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:82307263 original size:108 final size:108
Alignment explanation
Indices: 82307126--82307551 Score: 527
Period size: 108 Copynumber: 3.9 Consensus size: 108
82307116 CCCGATTTAC
* * **
82307126 AGAATTACCGTTTTACCCTCGATTTACAGAATTATCGTTTTACCCTTGATTTTTAAAATTACCGT
1 AGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTACAAAATTACCGT
82307191 TTTACCCTC-AGTTTACAGAATTACCATTTTACCCTCAGTTTGT
66 TTTACCCTCGA-TTTACAGAATTACCATTTTACCCTCAGTTTGT
* * * ** *
82307234 AGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTGTAAAATTACTGT
1 AGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTACAAAATTACCGT
* * *
82307299 TTTACCCTTGATTTACAGAATTACCGTTTTACCCTCAGTTTAT
66 TTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTGT
* ** * * * **
82307342 AGAATTAACATTTTATGCTCGATTTACAGAATTATCGTTTTACCTTTAGA-TTACAGAATTACTA
1 AGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACC-CTCGATTTACAAAATTACCG
*
82307406 TTTTACCCTCGATTTACAGAATTACTATTTTACCCTC-GATTTGT
65 TTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAG-TTTGT
* * * * * *
82307450 AAAATTACCGTTTTACCCTCGATTTATAGAATTA-CTGGTTTACCCTCGGTTTACAAAATTATCG
1 AGAATTACCATTTTACCCTCGATTTACAGAATTATC-GTTTTACCCTCGATTTACAAAATTACCG
*
82307514 TTTTACCCTCGATTTACAGAATTACTATTTTACCCTCA
65 TTTTACCCTCGATTTACAGAATTACCATTTTACCCTCA
82307552 ATTGTGAAAT
Statistics
Matches: 272, Mismatches: 40, Indels: 11
0.84 0.12 0.03
Matches are distributed among these distances:
107 4 0.01
108 265 0.97
109 3 0.01
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (108 bp):
AGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTACAAAATTACCGT
TTTACCCTCGATTTACAGAATTACCATTTTACCCTCAGTTTGT
Found at i:82307589 original size:27 final size:27
Alignment explanation
Indices: 82307567--82307735 Score: 248
Period size: 27 Copynumber: 6.3 Consensus size: 27
82307557 GAAATTACTA
82307567 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* ***
82307594 AAATACCCCTATAGGGTAGAATTAATA
1 AAATACCCCTGTAGGGTAGAATTACCG
*
82307621 AAATACTCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
82307648 AAATACCCCCGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
82307675 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
82307702 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
82307729 AGATACC
1 AAATACC
82307736 TTTGTGGGGG
Statistics
Matches: 123, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 123 1.00
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:82307992 original size:27 final size:26
Alignment explanation
Indices: 82307954--82308036 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
82307944 CGGAGGAAGC
*
82307954 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
82307981 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
82308007 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
82308034 GTT
1 GTT
82308037 GACCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:82308156 original size:22 final size:22
Alignment explanation
Indices: 82308124--82308182 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
82308114 CCCGTTATTA
*
82308124 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
82308146 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
82308168 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
82308183 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:82308369 original size:27 final size:27
Alignment explanation
Indices: 82308347--82308415 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
82308337 TAGGTGGGTT
*
82308347 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
82308374 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
**
82308401 TATCACAATATCTGT
1 TGCCACAATATCTGT
82308416 TGACCGATCG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
27 36 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:82308668 original size:380 final size:380
Alignment explanation
Indices: 82307967--82308796 Score: 1491
Period size: 380 Copynumber: 2.2 Consensus size: 380
82307957 CTGGTGGCTA
* *
82307967 TGCCACAAATATCTG-TTCTGGTGGCTCTGCCACAATATCTGTATTTGGTGACTCTGTCACAATA
1 TGCCAC-ATTATCTGATTCTGGTGGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACAATA
*
82308031 TCTGTTGACCGATCGATGGCTAAGTGCCGATCACGCTACCGAAGGCTGTGTGCCGTTGTTGTGGG
65 TCTGTTGACCGATCGATGGCTAAGTGCCGATCACGCTACCGAAGGCTGTGTCCCGTTGTTGTGGG
* *
82308096 CTTCGTGCCGATTATAGACCCGTTATTAATGGCTCTGTGCCAACCTAAATATGGCTTTGTGCCAT
130 CTTCGTGCCGATTATAAACCCGTTATTAATGGCTCTGTGCCAACCTAAATATGGCTTTATGCCAT
82308161 CTTGACTATGGCTTCGTGCCAAACGTATTTACCTGTAGCTATGTGCCTAACATATTTGTTGACGA
195 CTTGACTATGGCTTCGTGCCAAACGTATTTACCTGTAGCTATGTGCCTAACATATTTGTTGACGA
82308226 CTCTGTGTCGATCATATTTACCGAAGGCTGTGCGCCAGTTATATTACCGTCACTGATGGCTATGT
260 CTCTGTGTCGATCATATTTACCGAAGGCTGTGCGCCAGTTATATTACCGTCACTGATGGCTATGT
* *
82308291 GCCGAAGTTATTACAGTTATCTATGGCTTTGTGCCACGTATTCTGTTAGGTGGGTT
325 GCCGAAGTTATTACAGTTATCTATGGCTTGGTGCCACGTATTCTGTTAGGTGAGTT
*
82308347 TGCCACATTATCTGATTCTGGTGGCTCTGCCACAATATCTGTATCTGGTGACTCTATCACAATAT
1 TGCCACATTATCTGATTCTGGTGGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACAATAT
* * *
82308412 CTGTTGACCGATCGATGGCTGAGTGCCGATCACGTTATCGAAGGCTGTGTCCCGTTGTTGTGGGC
66 CTGTTGACCGATCGATGGCTAAGTGCCGATCACGCTACCGAAGGCTGTGTCCCGTTGTTGTGGGC
* *
82308477 TTCGTGTCGATTATAAACCCGTTATTAATGGCTGTGTGCCAACCTAAATATGGCTTTATGCCATC
131 TTCGTGCCGATTATAAACCCGTTATTAATGGCTCTGTGCCAACCTAAATATGGCTTTATGCCATC
82308542 TTGACTATGGCTTCGTGCCAAACGTATTTACCTGTAGCTATGTGCCTAACATATTTGTTGACGAC
196 TTGACTATGGCTTCGTGCCAAACGTATTTACCTGTAGCTATGTGCCTAACATATTTGTTGACGAC
* *
82308607 TCTGTGTCGATCATATTTACCGAAGGCTGTGTGCCAGTTATATTACCGTCACTGGTGGCTATGTG
261 TCTGTGTCGATCATATTTACCGAAGGCTGTGCGCCAGTTATATTACCGTCACTGATGGCTATGTG
*
82308672 CTGAAGTTATTACAGTTATCTATGGCTTGGTGCCACGTATTCTGTTAGGTGAGTT
326 CCGAAGTTATTACAGTTATCTATGGCTTGGTGCCACGTATTCTGTTAGGTGAGTT
*
82308727 TGCCACATTATCTGATTCTGGTGGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACGATAT
1 TGCCACATTATCTGATTCTGGTGGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACAATAT
82308792 CTGTT
66 CTGTT
82308797 CTGGCAGCCA
Statistics
Matches: 431, Mismatches: 18, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
379 7 0.02
380 424 0.98
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (380 bp):
TGCCACATTATCTGATTCTGGTGGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACAATAT
CTGTTGACCGATCGATGGCTAAGTGCCGATCACGCTACCGAAGGCTGTGTCCCGTTGTTGTGGGC
TTCGTGCCGATTATAAACCCGTTATTAATGGCTCTGTGCCAACCTAAATATGGCTTTATGCCATC
TTGACTATGGCTTCGTGCCAAACGTATTTACCTGTAGCTATGTGCCTAACATATTTGTTGACGAC
TCTGTGTCGATCATATTTACCGAAGGCTGTGCGCCAGTTATATTACCGTCACTGATGGCTATGTG
CCGAAGTTATTACAGTTATCTATGGCTTGGTGCCACGTATTCTGTTAGGTGAGTT
Found at i:82308757 original size:27 final size:25
Alignment explanation
Indices: 82308727--82308800 Score: 85
Period size: 27 Copynumber: 2.8 Consensus size: 25
82308717 TAGGTGAGTT
*
82308727 TGCCACATTATCTGATTCTGGTGGCTC
1 TGCCACA-TATCTG-TTCTGGTGACTC
82308754 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCAC-ATATCTGT-TCTGGTGACTC
*
82308781 TGTCACGATATCTGTTCTGG
1 TGCCAC-ATATCTGTTCTGG
82308801 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
26 6 0.14
27 35 0.83
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (25 bp):
TGCCACATATCTGTTCTGGTGACTC
Found at i:82308927 original size:6 final size:6
Alignment explanation
Indices: 82308918--82309019 Score: 104
Period size: 6 Copynumber: 16.8 Consensus size: 6
82308908 TTGCATTCAC
* *
82308918 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
*
82308967 -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
82309015 ATTCT
1 ATTCT
82309020 CATTTTGGTT
Statistics
Matches: 81, Mismatches: 6, Indels: 18
0.77 0.06 0.17
Matches are distributed among these distances:
5 6 0.07
6 68 0.84
7 5 0.06
8 2 0.02
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:82309040 original size:30 final size:30
Alignment explanation
Indices: 82308918--82309019 Score: 161
Period size: 30 Copynumber: 3.4 Consensus size: 30
82308908 TTGCATTCAC
*
82308918 ATTCTGATTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-TAATTCTG
82308949 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
*
82308979 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
82309009 ATTCTGATTCT
1 ATTCTGATTCT
82309020 CATTTTGGTT
Statistics
Matches: 67, Mismatches: 2, Indels: 5
0.91 0.03 0.07
Matches are distributed among these distances:
29 1 0.01
30 44 0.66
31 22 0.33
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:82311070 original size:27 final size:27
Alignment explanation
Indices: 82311040--82311464 Score: 390
Period size: 27 Copynumber: 15.7 Consensus size: 27
82311030 TACTCCCGAA
***
82311040 TTACAGAATTATTGTTTTACCCTCGAT
1 TTACAGAATTACCATTTTACCCTCGAT
*
82311067 TTACAGAATTATCATTTTACCCTCGAT
1 TTACAGAATTACCATTTTACCCTCGAT
*
82311094 TT-CTAAAATTACCATTTTACCCTCGAT
1 TTAC-AGAATTACCATTTTACCCTCGAT
*
82311121 TTACAAAATTACCATTTTACCCTC-AGT
1 TTACAGAATTACCATTTTACCCTCGA-T
* * *
82311148 TTATAGAATTTCTATTTTACCCTCGAT
1 TTACAGAATTACCATTTTACCCTCGAT
* **
82311175 TTACAGAATTACCGTTTTACCCTTAAT
1 TTACAGAATTACCATTTTACCCTCGAT
** * * *
82311202 TTGTAAAATTACTATTTTACCCTTGAT
1 TTACAGAATTACCATTTTACCCTCGAT
* * *
82311229 TTACAAAATTATCGTTTTACCCTC-AGT
1 TTACAGAATTACCATTTTACCCTCGA-T
* *
82311256 TTATAGGATTACCATTTTACCCTCGAT
1 TTACAGAATTACCATTTTACCCTCGAT
* * *
82311283 TTACAGAATTATCGTTTTACCTTC-AGT
1 TTACAGAATTACCATTTTACCCTCGA-T
* *
82311310 TTACAAAATTACTATTTTACCCTCGAT
1 TTACAGAATTACCATTTTACCCTCGAT
* **
82311337 TTATAGAATTACTGTTTTACCCTCGAT
1 TTACAGAATTACCATTTTACCCTCGAT
** * *
82311364 TTGTAAAATTACCGTTTTACCCTCGAT
1 TTACAGAATTACCATTTTACCCTCGAT
* *** *
82311391 TTATAGAATTACTGGTTTACCCTCGGT
1 TTACAGAATTACCATTTTACCCTCGAT
* ***
82311418 TTACAAAATTATTGTTTTACCCTCGAT
1 TTACAGAATTACCATTTTACCCTCGAT
*
82311445 TTACAGAATTACTATTTTAC
1 TTACAGAATTACCATTTTAC
82311465 TCTCAATTAT
Statistics
Matches: 330, Mismatches: 60, Indels: 16
0.81 0.15 0.04
Matches are distributed among these distances:
26 4 0.01
27 322 0.98
28 4 0.01
ACGTcount: A:0.28, C:0.20, G:0.08, T:0.43
Consensus pattern (27 bp):
TTACAGAATTACCATTTTACCCTCGAT
Found at i:82311181 original size:108 final size:108
Alignment explanation
Indices: 82311054--82311469 Score: 507
Period size: 108 Copynumber: 3.9 Consensus size: 108
82311044 AGAATTATTG
* *
82311054 TTTTACCCTCGATTTACAGAATTATCATTTTACCCTCGATTT-CTAAAATTACCATTTTACCCTC
1 TTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTAC-AAAATTACTATTTTACCCTC
* *
82311118 GATTTACAAAATTACCATTTTACCCTCAGTTTATAGAATTTCTA
65 GATTTACAAAATTACCATTTTACCCTCAGTTTATAGAATTACCA
* ** ** *
82311162 TTTTACCCTCGATTTACAGAATTACCGTTTTACCCTTAATTTGTAAAATTACTATTTTACCCTTG
1 TTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCG
* * *
82311227 ATTTACAAAATTATCGTTTTACCCTCAGTTTATAGGATTACCA
66 ATTTACAAAATTACCATTTTACCCTCAGTTTATAGAATTACCA
*
82311270 TTTTACCCTCGATTTACAGAATTATCGTTTTACCTTC-AGTTTACAAAATTACTATTTTACCCTC
1 TTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGA-TTTACAAAATTACTATTTTACCCTC
* * ** * * *
82311334 GATTTATAGAATTACTGTTTTACCCTC-GATTTGTAAAATTACCG
65 GATTTACAAAATTACCATTTTACCCTCAG-TTTATAGAATTACCA
* * * * *
82311378 TTTTACCCTCGATTTATAGAATTA-CTGGTTTACCCTCGGTTTACAAAATTATTGTTTTACCCTC
1 TTTTACCCTCGATTTACAGAATTATC-GTTTTACCCTCGATTTACAAAATTACTATTTTACCCTC
* * *
82311442 GATTTACAGAATTACTATTTTACTCTCA
65 GATTTACAAAATTACCATTTTACCCTCA
82311470 ATTATGAAAT
Statistics
Matches: 267, Mismatches: 35, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
107 3 0.01
108 264 0.99
ACGTcount: A:0.28, C:0.21, G:0.08, T:0.43
Consensus pattern (108 bp):
TTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCG
ATTTACAAAATTACCATTTTACCCTCAGTTTATAGAATTACCA
Found at i:82311515 original size:27 final size:27
Alignment explanation
Indices: 82311485--82311599 Score: 167
Period size: 27 Copynumber: 4.3 Consensus size: 27
82311475 GAAATTACTA
*
82311485 AAATACCCCTATAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
82311512 AAATACCCCCGTAAGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
82311539 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
82311566 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
82311593 AGATACC
1 AAATACC
82311600 TTTGTGTGGG
Statistics
Matches: 76, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 76 1.00
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.22
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:82311856 original size:27 final size:26
Alignment explanation
Indices: 82311818--82311872 Score: 83
Period size: 27 Copynumber: 2.1 Consensus size: 26
82311808 CGGAGGAAGC
82311818 GTTCTGGTGGCTATGCCATAAATATCT
1 GTTCTGGTGGCTATGCCA-AAATATCT
* *
82311845 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCAAAATATCT
82311871 GT
1 GT
82311873 GTCTAGTGAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 9 0.35
27 17 0.65
ACGTcount: A:0.18, C:0.22, G:0.24, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCAAAATATCT
Found at i:82311885 original size:27 final size:26
Alignment explanation
Indices: 82311838--82311900 Score: 72
Period size: 27 Copynumber: 2.4 Consensus size: 26
82311828 CTATGCCATA
* * *
82311838 AATATCTGTTCTGGTGGCTCTGCCAC
1 AATATCTGTTCTAGTGACTCTACCAC
* *
82311864 AATATCTGTGTCTAGTGACTCTATCAT
1 AATATCTGT-TCTAGTGACTCTACCAC
82311891 AATATCTGTT
1 AATATCTGTT
82311901 GACCGATCGA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
26 10 0.32
27 21 0.68
ACGTcount: A:0.22, C:0.21, G:0.17, T:0.40
Consensus pattern (26 bp):
AATATCTGTTCTAGTGACTCTACCAC
Found at i:82312020 original size:22 final size:22
Alignment explanation
Indices: 82311988--82312046 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
82311978 CCCGTTATTA
*
82311988 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
82312010 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
82312032 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
82312047 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:82312241 original size:27 final size:25
Alignment explanation
Indices: 82312211--82312284 Score: 85
Period size: 27 Copynumber: 2.8 Consensus size: 25
82312201 TAGGTGGGTT
*
82312211 TGCCACATTATCTGATTCTGGTGGCTC
1 TGCCACA-TATCTG-TTCTGGTGACTC
82312238 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCAC-ATATCTGT-TCTGGTGACTC
*
82312265 TGTCACGATATCTGTTCTGG
1 TGCCAC-ATATCTGTTCTGG
82312285 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
26 6 0.14
27 35 0.83
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (25 bp):
TGCCACATATCTGTTCTGGTGACTC
Found at i:82312411 original size:6 final size:6
Alignment explanation
Indices: 82312402--82312588 Score: 181
Period size: 6 Copynumber: 30.8 Consensus size: 6
82312392 TTGCATTCAC
* *
82312402 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* *
82312451 -TTACTA ATACTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * *
82312499 ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG
82312548 ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
82312589 CATTTTGGTT
Statistics
Matches: 151, Mismatches: 14, Indels: 32
0.77 0.07 0.16
Matches are distributed among these distances:
5 11 0.07
6 127 0.84
7 10 0.07
8 3 0.02
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:82312542 original size:85 final size:85
Alignment explanation
Indices: 82312402--82312588 Score: 356
Period size: 85 Copynumber: 2.2 Consensus size: 85
82312392 TTGCATTCAC
*
82312402 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
82312467 TGATTCTGATTCTGTTACTG
66 TGATTCTGATTCTGTTACTG
*
82312487 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
82312552 TGATTCTGATTCTGTTACTG
66 TGATTCTGATTCTGTTACTG
82312572 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
82312589 CATTTTGGTT
Statistics
Matches: 100, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 100 1.00
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (85 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
TGATTCTGATTCTGTTACTG
Found at i:82312609 original size:30 final size:30
Alignment explanation
Indices: 82312402--82312588 Score: 262
Period size: 30 Copynumber: 6.4 Consensus size: 30
82312392 TTGCATTCAC
*
82312402 ATTCTGATTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-TAATTCTG
*
82312433 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
82312463 ATTCTGATTCTGATTCTG-T--T-A--CTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
*
82312487 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
82312518 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
*
82312548 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
82312578 ATTCTGATTCT
1 ATTCTGATTCT
82312589 CATTTTGGTT
Statistics
Matches: 142, Mismatches: 5, Indels: 19
0.86 0.03 0.11
Matches are distributed among these distances:
24 21 0.15
26 1 0.01
27 1 0.01
28 1 0.01
29 3 0.02
30 70 0.49
31 45 0.32
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:82314634 original size:27 final size:27
Alignment explanation
Indices: 82314604--82314957 Score: 372
Period size: 27 Copynumber: 13.1 Consensus size: 27
82314594 CCAAAGTACT
* *
82314604 CTCGATTGACAGAATTACCGTTTTACG
1 CTCGATTTACAGAATTACCGTTTTACC
*
82314631 CTCGATTTACAGAATTATCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
** * *
82314658 CTCGATTTTTAAAATTACTGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
82314685 CTCAATTTACAGAATTACCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
**
82314712 CTC-AGTTTACAGAATTACTATTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
*
82314739 CTCGATTTATAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* ** * **
82314766 CTCAATTTGTAAAATTACTATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
82314793 CTCAATTTACAGAATTATCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
82314820 CTC-AGTTTACAGAATTACCATTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
* *
82314847 CTTGATTTACAGAATTATCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* **
82314874 CT-TATTTTACAGAATTACTATTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
* * *
82314901 CTCGATTTGCAGAATTACTGTCTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* **
82314928 CTCGATTTACGGAATTACTATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
82314955 CTC
1 CTC
82314958 AATTGTGAAA
Statistics
Matches: 275, Mismatches: 46, Indels: 12
0.83 0.14 0.04
Matches are distributed among these distances:
26 3 0.01
27 269 0.98
28 3 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CTCGATTTACAGAATTACCGTTTTACC
Found at i:82315034 original size:54 final size:54
Alignment explanation
Indices: 82314966--82315161 Score: 270
Period size: 54 Copynumber: 3.6 Consensus size: 54
82314956 TCAATTGTGA
* *
82314966 AATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
1 AATTACTAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* *
82315020 AATTACTAAAATACCCTTATAGGGTAGAATTACCGAAATACCCCCGTAGGGTAG
1 AATTACTAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* *
82315074 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTACT-AAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
82315128 AATTA-TCAAGATACCTTTGTGGGGTAAAATTACC
1 AATTACT-AAAATACCCTTGTAGGGTAGAATTACC
82315162 ATTTTGCCCC
Statistics
Matches: 127, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
53 1 0.01
54 126 0.99
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:82315142 original size:27 final size:27
Alignment explanation
Indices: 82314974--82315132 Score: 237
Period size: 27 Copynumber: 5.9 Consensus size: 27
82314964 GAAATTACTA
82314974 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* **
82315001 AAATACCCCTATAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
82315028 AAATACCCTTATAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
82315055 AAATACCCCCGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
82315082 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
82315109 AAATACCCCTGTAGGGTAGAATTA
1 AAATACCCCTGTAGGGTAGAATTA
82315133 TCAAGATACC
Statistics
Matches: 116, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 116 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.24
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:82315152 original size:27 final size:27
Alignment explanation
Indices: 82314974--82315159 Score: 205
Period size: 27 Copynumber: 6.9 Consensus size: 27
82314964 GAAATTACTA
* *
82314974 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTATCG
* * *
82315001 AAATACCCCTATAGGGTAGAATTA-CTA
1 AAATACCCTTGTAGGGTAGAATTATC-G
* *
82315028 AAATACCCTTATAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTATCG
**
82315055 AAATACCCCCGTAGGGTAGAATTATCG
1 AAATACCCTTGTAGGGTAGAATTATCG
* *
82315082 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTATCG
*
82315109 AAATACCCCTGTAGGGTAGAATTATC-
1 AAATACCCTTGTAGGGTAGAATTATCG
* * *
82315135 AAGATACCTTTGTGGGGTAAAATTA
1 AA-ATACCCTTGTAGGGTAGAATTA
82315160 CCATTTTGCC
Statistics
Matches: 137, Mismatches: 19, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
26 3 0.02
27 133 0.97
28 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.25
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAATTATCG
Found at i:82315397 original size:27 final size:26
Alignment explanation
Indices: 82315359--82315441 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
82315349 CGGAGGAAGC
*
82315359 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
*
82315386 GTTCTGGTGGCTCTACCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* *
82315412 GTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
82315439 GTT
1 GTT
82315442 GACCAATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 10 0.20
27 40 0.80
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:82315561 original size:22 final size:22
Alignment explanation
Indices: 82315529--82315587 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
82315519 CCCGTTATTA
*
82315529 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
82315551 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
82315573 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
82315588 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:82315774 original size:27 final size:27
Alignment explanation
Indices: 82315752--82315818 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
82315742 TAGGTGGGTT
*
82315752 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
82315779 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
82315806 TGTCACGATATCT
1 TGCCACAATATCT
82315819 ATTCTGGCAG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 34 0.97
28 1 0.03
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:82315952 original size:6 final size:6
Alignment explanation
Indices: 82315943--82316044 Score: 111
Period size: 6 Copynumber: 16.8 Consensus size: 6
82315933 TTGCATTCAC
* *
82315943 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* *
82315992 -TTACTA ATACTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
82316040 ATTCT
1 ATTCT
82316045 CATTTTGGTT
Statistics
Matches: 81, Mismatches: 8, Indels: 14
0.79 0.08 0.14
Matches are distributed among these distances:
5 5 0.06
6 70 0.86
7 5 0.06
8 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:82316065 original size:30 final size:30
Alignment explanation
Indices: 82315943--82316044 Score: 168
Period size: 30 Copynumber: 3.4 Consensus size: 30
82315933 TTGCATTCAC
*
82315943 ATTCTGATTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-TAATTCTG
*
82315974 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
*
82316004 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
82316034 ATTCTGATTCT
1 ATTCTGATTCT
82316045 CATTTTGGTT
Statistics
Matches: 67, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
30 46 0.69
31 21 0.31
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:82318195 original size:50 final size:50
Alignment explanation
Indices: 82317980--82318272 Score: 225
Period size: 50 Copynumber: 5.8 Consensus size: 50
82317970 GTGAGAACAA
* * *
82317980 ATGTGTAGTACTATGTGCAGGATACTATGTGCTTA--AGATGGTTTTAGGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTATGTG--TACCAGATAG--TTAGGTCAC
* * ** * * * *
82318032 GTGTGTAGTCCTAAGTATAGGCTAATATGTGTACTAGACAGTTAGGTCGC
1 ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTCAC
* * * * * * *
82318082 ATGTGTAGTACTAAGTGCAAGCGACTATGCGTACCCGACAACTTCA-ATCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA-TAGTT-AGGTCAC
* * *
82318133 ATATGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTCAC
* ** * * * *
82318183 ATGTGTAGTACTAAGTGCAAGCTACTACATGTACCGGATTGTT-GGCCGC
1 ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTCAC
* * *
82318232 ATGTGTAATACGAAGTGCAGGCTACTATGCGTACCAGATAG
1 ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAG
82318273 CTTCGGTGAC
Statistics
Matches: 186, Mismatches: 50, Indels: 13
0.75 0.20 0.05
Matches are distributed among these distances:
49 38 0.20
50 82 0.44
51 37 0.20
52 29 0.16
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.29
Consensus pattern (50 bp):
ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTCAC
Found at i:82318217 original size:101 final size:101
Alignment explanation
Indices: 82318035--82318217 Score: 251
Period size: 101 Copynumber: 1.8 Consensus size: 101
82318025 AGGTCACGTG
* * * *
82318035 TGTAGTCCTAAGTATAGGCTAATATGTGTACTAGACAGTTAGGTCGCATGTGTAGTACTAAGTGC
1 TGTAGTACTAAGTACAGGCTAATACGTGTACTAGACAGTTAGGTCACATGTGTAGTACTAAGTGC
**
82318100 AAGCGACTATGCGTACCCGACAACTTCAATCACATA
66 AAGCGACTACACGTACCCGACAACTTCAATCACATA
* * *
82318136 TGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATAGTTAGGTCACATGTGTAGTACTAAGTG
1 TGTAGTACTAAGTACAGGCTAATACGTGTACT-AGACAGTTAGGTCACATGTGTAGTACTAAGTG
* *
82318200 CAAGCTACTACATGTACC
65 CAAGCGACTACACGTACC
82318218 GGATTGTTGG
Statistics
Matches: 70, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
100 1 0.01
101 69 0.99
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (101 bp):
TGTAGTACTAAGTACAGGCTAATACGTGTACTAGACAGTTAGGTCACATGTGTAGTACTAAGTGC
AAGCGACTACACGTACCCGACAACTTCAATCACATA
Found at i:82318491 original size:16 final size:15
Alignment explanation
Indices: 82318470--82318499 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
82318460 GAAAGGAGTA
82318470 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
82318486 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
82318500 TAGAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:82324207 original size:16 final size:17
Alignment explanation
Indices: 82324181--82324212 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
82324171 TATAGTTATG
82324181 AAAATGGACTAATTTGT
1 AAAATGGACTAATTTGT
82324198 AAAA-GGACTAATTTG
1 AAAATGGACTAATTTG
82324213 GAAATTGTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.44, C:0.06, G:0.19, T:0.31
Consensus pattern (17 bp):
AAAATGGACTAATTTGT
Found at i:82336143 original size:45 final size:45
Alignment explanation
Indices: 82336111--82336272 Score: 207
Period size: 45 Copynumber: 3.6 Consensus size: 45
82336101 CACTGTCCTT
** * *
82336111 GACATGGTCTTACACGTAACCACATGTATCGATGCCAACGTCCCA
1 GACATGGTCTTACACAAAAACACATATATCGATGCCAACGTCCCA
* * *
82336156 GACGTGGTCTTACACAAAAACACATATATCGATACCAACTTCCCA
1 GACATGGTCTTACACAAAAACACATATATCGATGCCAACGTCCCA
** * *
82336201 GATGTGGTCTTACACGAAAATACATATATCGATGCCAACGTCCCA
1 GACATGGTCTTACACAAAAACACATATATCGATGCCAACGTCCCA
* *
82336246 GACATGGTCTTACACGAAAGCACATAT
1 GACATGGTCTTACACAAAAACACATAT
82336273 CAGAATCTTA
Statistics
Matches: 101, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 101 1.00
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (45 bp):
GACATGGTCTTACACAAAAACACATATATCGATGCCAACGTCCCA
Found at i:82336846 original size:15 final size:15
Alignment explanation
Indices: 82336823--82336853 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
82336813 TCAAAAATTG
82336823 CAATACAAAACATAT
1 CAATACAAAACATAT
*
82336838 CAATCCAAAACATAT
1 CAATACAAAACATAT
82336853 C
1 C
82336854 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:82340931 original size:21 final size:20
Alignment explanation
Indices: 82340907--82340945 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
82340897 TGTGATCATG
82340907 TTTCATGAAAATTTTCTAAGT
1 TTTCATG-AAATTTTCTAAGT
* *
82340928 TTTCCTGAAGTTTTCTAA
1 TTTCATGAAATTTTCTAA
82340946 AGTTCTTGGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.28, C:0.13, G:0.10, T:0.49
Consensus pattern (20 bp):
TTTCATGAAATTTTCTAAGT
Found at i:82354417 original size:38 final size:38
Alignment explanation
Indices: 82354353--82354427 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
82354343 AATCTGAGTT
*
82354353 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
82354391 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
82354428 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:82354880 original size:40 final size:40
Alignment explanation
Indices: 82354481--82354868 Score: 535
Period size: 40 Copynumber: 9.7 Consensus size: 40
82354471 AGGTCTCGAC
82354481 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * *
82354520 GATGTATCCGGGCTAAGTCCCAAAAAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
82354560 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
82354600 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
82354640 GATGTATCCGGGCTAAGTCCCAAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
82354680 GATGTGTCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * * ** *
82354720 GATATATCTGTGCTAAACCCCGAAGAGCGTTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
82354760 GATGTATCCGGGCTACGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * * ** * *
82354800 GATATATCTGTGCTAAACCCCGAAGAGCGTTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * *
82354840 GTTATATCCGGGCTAGGTCCCGAAGAGCA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCA
82354869 ATCATGCTGG
Statistics
Matches: 304, Mismatches: 44, Indels: 1
0.87 0.13 0.00
Matches are distributed among these distances:
39 4 0.01
40 300 0.99
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:82358399 original size:49 final size:49
Alignment explanation
Indices: 82358315--82359311 Score: 1793
Period size: 49 Copynumber: 20.6 Consensus size: 49
82358305 TATTTGAATA
* *
82358315 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
82358362 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
82358411 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
82358460 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
82358509 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
82358558 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
82358607 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
82358656 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
82358705 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
82358754 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
82358803 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
82358852 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
82358901 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
82358950 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
82358999 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
82359048 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATCTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
82359095 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
82359144 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
82359191 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
82359238 AATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
82359285 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
82359312 TCCCGAAGGG
Statistics
Matches: 925, Mismatches: 19, Indels: 12
0.97 0.02 0.01
Matches are distributed among these distances:
47 196 0.21
48 1 0.00
49 728 0.79
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:82367447 original size:49 final size:49
Alignment explanation
Indices: 82367380--82367504 Score: 135
Period size: 49 Copynumber: 2.6 Consensus size: 49
82367370 AAGTTGATGC
* * *
82367380 CATGTCCTAGGCAGGTCTTACACTGACTCTCATATATCGAG-GTCGATGA
1 CATGTCCCAGACAGGTCTTACACTGACTCTCATATATCG-GTGTCGACGA
** * ** * *
82367429 TGTGTCCCAGATAGGTCTTACACTGGTTCTCATCTATCGGTGTCGACGC
1 CATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGTCGACGA
*
82367478 CATGTCCCAGACAAGTCTTACACTGAC
1 CATGTCCCAGACAGGTCTTACACTGAC
82367505 ACATAACAAG
Statistics
Matches: 59, Mismatches: 16, Indels: 2
0.77 0.21 0.03
Matches are distributed among these distances:
48 1 0.02
49 58 0.98
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (49 bp):
CATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGTCGACGA
Found at i:82367588 original size:48 final size:47
Alignment explanation
Indices: 82367536--82367690 Score: 181
Period size: 48 Copynumber: 3.3 Consensus size: 47
82367526 TCTCAGATAG
82367536 GTCTTACACTAGCTTGTATATCTCGAGGCCGATGCATGTCCCAGACAT
1 GTCTTACACTAGCTTGTATATCTCGAGGCC-ATGCATGTCCCAGACAT
* * *
82367584 GTCTTACACTGGCTTGTATATCTCAAGGCTCATGCATGTCCTAGACAT
1 GTCTTACACTAGCTTGTATATCTCGAGGC-CATGCATGTCCCAGACAT
* * * * *
82367632 GTCTTACACAAG-TTCTCATA-AT-GTGGCCAATGCATGTCCCAGGCAT
1 GTCTTACACTAGCTTGT-ATATCTCGAGGCC-ATGCATGTCCCAGACAT
82367678 GTCTTACACTAGC
1 GTCTTACACTAGC
82367691 AGACATATCA
Statistics
Matches: 91, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
45 1 0.01
46 29 0.32
47 4 0.04
48 56 0.62
49 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.30
Consensus pattern (47 bp):
GTCTTACACTAGCTTGTATATCTCGAGGCCATGCATGTCCCAGACAT
Found at i:82378123 original size:29 final size:28
Alignment explanation
Indices: 82378087--82378164 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
82378077 TCATGAGATT
82378087 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
82378117 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
82378144 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
82378165 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:82385917 original size:12 final size:12
Alignment explanation
Indices: 82385900--82385926 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
82385890 ATTCCGAAGT
82385900 ATATATATATAC
1 ATATATATATAC
82385912 ATATATATATAC
1 ATATATATATAC
82385924 ATA
1 ATA
82385927 AGTATGCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:82386445 original size:27 final size:27
Alignment explanation
Indices: 82386414--82386591 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
82386404 TAAATTGTAC
82386414 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
82386441 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
82386467 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
82386495 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
82386523 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
82386550 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
82386577 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
82386592 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:82386528 original size:82 final size:81
Alignment explanation
Indices: 82386415--82386570 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
82386405 AAATTGTACA
* *
82386415 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
82386479 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
82386496 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
82386561 TGCGAGTTGA
65 TGCGAATTGA
82386571 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:82386582 original size:82 final size:81
Alignment explanation
Indices: 82386411--82386591 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
82386401 GATTAAATTG
* *
82386411 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
82386476 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
82386492 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
82386556 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
82386574 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
82386592 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:82391784 original size:19 final size:18
Alignment explanation
Indices: 82391743--82391785 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
82391733 CGATTAATGC
*
82391743 ATTTAATTTTCTTCCTTG
1 ATTTAATTTTCTTACTTG
* *
82391761 CTTTAATTCTTTTTACTTG
1 ATTTAATT-TTCTTACTTG
82391780 ATTTAA
1 ATTTAA
82391786 GTAAAAAAGA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.21, C:0.14, G:0.05, T:0.60
Consensus pattern (18 bp):
ATTTAATTTTCTTACTTG
Found at i:82393410 original size:151 final size:151
Alignment explanation
Indices: 82393136--82393440 Score: 574
Period size: 151 Copynumber: 2.0 Consensus size: 151
82393126 CAAGGAGACC
* *
82393136 CTAATTTATGGTAAAGATAAACTCTCATTCAAAGATATGAAGGGTCATTTGCTGAGTAGAGACAA
1 CTAATTTATGGCAAAGATAAACTCTCATTCAAAGATATGAAGGGTCATTTGCTGAGTAGAAACAA
82393201 ACTCGACAATGAGTTTGGTTTGGATAGTAAGGCAGAAAGCAAGCTATTGTTTTGGTAGCACCAAA
66 ACTCGACAATGAGTTTGGTTTGGATAGTAAGGCAGAAAGCAAGCTATTGTTTTGGTAGCACCAAA
82393266 GAAGCGAGACAAAAGGTTTCA
131 GAAGCGAGACAAAAGGTTTCA
*
82393287 CTAATTTATGGCAAAGATAAACTCTCATTCAAAGATATGAAGGGTCATTTGTTGAGTAGAAACAA
1 CTAATTTATGGCAAAGATAAACTCTCATTCAAAGATATGAAGGGTCATTTGCTGAGTAGAAACAA
*
82393352 ACTCGACAATGAGTTTGGTTTGGATAGTAAGGCAGAAAGCAAGCTTTTGTTTTGGTAGCACCAAA
66 ACTCGACAATGAGTTTGGTTTGGATAGTAAGGCAGAAAGCAAGCTATTGTTTTGGTAGCACCAAA
82393417 GAAGCGAGACAAAAGGTTTCA
131 GAAGCGAGACAAAAGGTTTCA
82393438 CTA
1 CTA
82393441 TTGTAAGAAG
Statistics
Matches: 150, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
151 150 1.00
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.27
Consensus pattern (151 bp):
CTAATTTATGGCAAAGATAAACTCTCATTCAAAGATATGAAGGGTCATTTGCTGAGTAGAAACAA
ACTCGACAATGAGTTTGGTTTGGATAGTAAGGCAGAAAGCAAGCTATTGTTTTGGTAGCACCAAA
GAAGCGAGACAAAAGGTTTCA
Found at i:82396060 original size:49 final size:49
Alignment explanation
Indices: 82395988--82396258 Score: 270
Period size: 49 Copynumber: 5.6 Consensus size: 49
82395978 ATGTGTATGT
82395988 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATAAGTGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATAAGTGAGAGC
* *
82396037 CAGTGTAAGACCGGTCTGGGACATGGCATCGACCTCAAGAT-A-TGCA-AGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGA-CAC-AGATAAGTG-AGAGC
* *
82396086 TAGTGTAAGACCTGTCTGGGACATGGCATCGGCACAGATAAGTGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATAAGTGAGAGC
* * * * * *
82396135 CAGTGTAAGACCTGTCTGGGACATGGCGTTGGC-CTCGATGTA-TGTA-AGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACAC-AGAT-AAGTG-AGAGC
* * * **
82396184 CAGTGTAAGGCCTATTTGGGACATGGCATCGACTTAGAT--GTGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATAAGTGAGAGC
* *
82396231 CAGTGTAAGACCATGTTTGGAACATGGC
1 CAGTGTAAGACC-TGTCTGGGACATGGC
82396259 GTCAGCATCG
Statistics
Matches: 185, Mismatches: 24, Indels: 27
0.78 0.10 0.11
Matches are distributed among these distances:
46 1 0.01
47 19 0.10
48 18 0.10
49 137 0.74
50 6 0.03
51 4 0.02
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.23
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATAAGTGAGAGC
Found at i:82396158 original size:98 final size:98
Alignment explanation
Indices: 82395986--82396258 Score: 365
Period size: 98 Copynumber: 2.8 Consensus size: 98
82395976 TGATGTGTAT
*
82395986 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATAAGTGAGAGCCAGTGTAAGACCGG
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATAAGTGAGAGCCAGTGTAAGACCTG
82396051 TCTGGGACATGGCATCGACCTC-AAGATATGCAA
66 TCTGGGACATGGCATCGACCTCGAAG-TATGCAA
*
82396084 G-CTAGTGTAAGACCTGTCTGGGACATGGCATCGGCACAGATAAGTGAGAGCCAGTGTAAGACCT
1 GTC-AGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATAAGTGAGAGCCAGTGTAAGACCT
* * * * *
82396148 GTCTGGGACATGGCGTTGGCCTCGATGTATGTAA
65 GTCTGGGACATGGCATCGACCTCGAAGTATGCAA
* * * **
82396182 GTCAGTGTAAGGCCTATTTGGGACATGGCATCGACTTAGAT--GTGAGAGCCAGTGTAAGACCAT
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATAAGTGAGAGCCAGTGTAAGACC-T
* *
82396245 GTTTGGAACATGGC
65 GTCTGGGACATGGC
82396259 GTCAGCATCG
Statistics
Matches: 156, Mismatches: 15, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
96 20 0.13
97 14 0.09
98 119 0.76
99 3 0.02
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (98 bp):
GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATAAGTGAGAGCCAGTGTAAGACCTG
TCTGGGACATGGCATCGACCTCGAAGTATGCAA
Found at i:82402590 original size:14 final size:14
Alignment explanation
Indices: 82402582--82402611 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
82402572 AAATTTTGGT
82402582 GAATTAATTTTAGC
1 GAATTAATTTTAGC
82402596 GAATTAATTTTAGC
1 GAATTAATTTTAGC
82402610 GA
1 GA
82402612 TTAGGAGCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.07, G:0.17, T:0.40
Consensus pattern (14 bp):
GAATTAATTTTAGC
Found at i:82403727 original size:49 final size:49
Alignment explanation
Indices: 82403665--82403960 Score: 188
Period size: 49 Copynumber: 6.2 Consensus size: 49
82403655 ATGTATGTGT
*
82403665 CAGTGTAAAACCTGTCTGGGACATGGCATCGATAC-AGATATGTGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGA-ACAAGATATGTGAGAGC
* * * *
82403714 CATTGTAAGACCTGTCTGGGACATCGCATCGAAATCAAGATATG-CA-AGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCG-AA-CAAGATATGTGAGAGC
* * * * ** * * *
82403763 TAGTGTAAGACATATCTGGGACATGGCATCG-GCTTG--A-G-GTGTGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAACAAGATATGTGAGAGC
* *
82403807 TAGTGTAAGACCTGTCTGGGACATGGCATCG-ACACAGATAAGTGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAACA-AGATATGTGAGAGC
* * * ** ** *
82403856 CAGTGTAAGACTTCTCTGGGGCATGGCATCGGCCTTGATGTATGT-A-AGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAACAAGA--TATGTGAGAGC
* * *
82403905 TAGTGTAAGACCTATCTGGGACATGGCATCG-ACTTAG--ATGTGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAAC-AAGATATGTGAGAGC
82403952 CAGTGTAAG
1 CAGTGTAAG
82403961 GCTATGTTTG
Statistics
Matches: 191, Mismatches: 41, Indels: 32
0.72 0.16 0.12
Matches are distributed among these distances:
43 1 0.01
44 33 0.17
45 5 0.03
46 3 0.02
47 11 0.06
48 2 0.01
49 120 0.63
50 5 0.03
51 11 0.06
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGAACAAGATATGTGAGAGC
Found at i:82403836 original size:93 final size:97
Alignment explanation
Indices: 82403717--82403960 Score: 281
Period size: 93 Copynumber: 2.6 Consensus size: 97
82403707 TGAGAGCCAT
* **
82403717 TGTAAGACCTGTCTGGGACATCGCATCGAAATCAAGAT-A-TGCA-AGTTAGTGTAAGACATATC
1 TGTAAGACCTGTCTGGGACATGGCATCGAAA-C-AGATAAGTG-AGAGCCAGTGTAAGACATATC
*
82403779 TGGGACATGGCATCGG-CTTGA-G-GTGT-GTTAG
63 TGGGACATGGCATCGGCCTTGATGTATGTAGTTAG
* * *
82403810 TGTAAGACCTGTCTGGGACATGGCATCGACACAGATAAGTGAGAGCCAGTGTAAGACTTCTCTGG
1 TGTAAGACCTGTCTGGGACATGGCATCGAAACAGATAAGTGAGAGCCAGTGTAAGACATATCTGG
*
82403875 GGCATGGCATCGGCCTTGATGTATGTAAGTTAG
66 GACATGGCATCGGCCTTGATGTATGT-AGTTAG
* ***
82403908 TGTAAGACCTATCTGGGACATGGCATCGACTTAGAT--GTGAGAGCCAGTGTAAG
1 TGTAAGACCTGTCTGGGACATGGCATCGAAACAGATAAGTGAGAGCCAGTGTAAG
82403961 GCTATGTTTG
Statistics
Matches: 132, Mismatches: 11, Indels: 13
0.85 0.07 0.08
Matches are distributed among these distances:
91 4 0.03
92 3 0.02
93 61 0.46
94 5 0.04
95 1 0.01
96 20 0.15
98 38 0.29
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (97 bp):
TGTAAGACCTGTCTGGGACATGGCATCGAAACAGATAAGTGAGAGCCAGTGTAAGACATATCTGG
GACATGGCATCGGCCTTGATGTATGTAGTTAG
Found at i:82403921 original size:142 final size:142
Alignment explanation
Indices: 82403660--82403935 Score: 392
Period size: 142 Copynumber: 1.9 Consensus size: 142
82403650 GGGTGATGTA
* * *
82403660 TGTGTCAGTGTAAAACCTGTCTGGGACATGGCATCGATACAGATATGTGAGAGCCATTGTAAGAC
1 TGTGTCAGTGTAAAACCTGTCTGGGACATGGCATCGACACAGATAAGTGAGAGCCAGTGTAAGAC
*
82403725 CTGTCTGGGACATCGCATCGAAATCAAGATATGCAAGTTAGTGTAAGACATATCTGGGACATGGC
66 CTCTCTGGGACATCGCATCGAAATCAAGATATGCAAGTTAGTGTAAGACATATCTGGGACATGGC
82403790 ATCGGCTTGAGG
131 ATCGGCTTGAGG
* *
82403802 TGTGTTAGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATAAGTGAGAGCCAGTGTAAGAC
1 TGTGTCAGTGTAAAACCTGTCTGGGACATGGCATCGACACAGATAAGTGAGAGCCAGTGTAAGAC
* * * *** * * * *
82403867 TTCTCTGGGGCATGGCATCGGCCTTGATG-TATGTAAGTTAGTGTAAGACCTATCTGGGACATGG
66 CTCTCTGGGACATCGCATC-GAAATCAAGATATGCAAGTTAGTGTAAGACATATCTGGGACATGG
82403931 CATCG
130 CATCG
82403936 ACTTAGATGT
Statistics
Matches: 117, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
142 113 0.97
143 4 0.03
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (142 bp):
TGTGTCAGTGTAAAACCTGTCTGGGACATGGCATCGACACAGATAAGTGAGAGCCAGTGTAAGAC
CTCTCTGGGACATCGCATCGAAATCAAGATATGCAAGTTAGTGTAAGACATATCTGGGACATGGC
ATCGGCTTGAGG
Found at i:82409934 original size:12 final size:13
Alignment explanation
Indices: 82409919--82409950 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
82409909 AATTTTATTT
82409919 AAAATTAATT-AA
1 AAAATTAATTCAA
82409931 AAAA-TAATTCAA
1 AAAATTAATTCAA
82409943 AAAATTAA
1 AAAATTAA
82409951 AAAATATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 5 0.28
12 10 0.56
13 3 0.17
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (13 bp):
AAAATTAATTCAA
Found at i:82409945 original size:23 final size:24
Alignment explanation
Indices: 82409914--82409967 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 24
82409904 AGGTTAATTT
82409914 TATTT-AAAATTAATTAAAAAATA
1 TATTTCAAAATTAATTAAAAAATA
82409937 -A-TTCAAAA--AATTAAAAAATA
1 TATTTCAAAATTAATTAAAAAATA
82409957 TATTTTCAAAA
1 TA-TTTCAAAA
82409968 ATTTAATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
20 12 0.44
21 3 0.11
22 5 0.19
23 7 0.26
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (24 bp):
TATTTCAAAATTAATTAAAAAATA
Found at i:82412576 original size:21 final size:21
Alignment explanation
Indices: 82412552--82412591 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
82412542 GGAGCTATCA
82412552 CACATGGACGCGTGGGATTTC
1 CACATGGACGCGTGGGATTTC
*
82412573 CACATGGACGTGTGGGATT
1 CACATGGACGCGTGGGATT
82412592 AGCCTAAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.20, G:0.35, T:0.25
Consensus pattern (21 bp):
CACATGGACGCGTGGGATTTC
Found at i:82426913 original size:27 final size:27
Alignment explanation
Indices: 82426882--82427059 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
82426872 TAAATTGTAC
82426882 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
82426909 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
82426935 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
82426963 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
82426991 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
82427018 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
82427045 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
82427060 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:82426996 original size:82 final size:81
Alignment explanation
Indices: 82426883--82427038 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
82426873 AAATTGTACA
* *
82426883 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
82426947 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
82426964 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
82427029 TGCGAGTTGA
65 TGCGAATTGA
82427039 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:82427050 original size:82 final size:81
Alignment explanation
Indices: 82426879--82427059 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
82426869 GATTAAATTG
* *
82426879 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
82426944 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
82426960 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
82427024 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
82427042 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
82427060 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:82431330 original size:5 final size:5
Alignment explanation
Indices: 82431320--82431352 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
82431310 CCAATTTGTA
82431320 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
82431353 GAACACACAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:82434323 original size:48 final size:48
Alignment explanation
Indices: 82434252--82434347 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
82434242 AAATTTTAAG
*
82434252 AAGTAGAATGTGGGTCCTAAATCTCAGAATACTTCTGCAGCCAGTGTA
1 AAGTAGAATGTGGGTCCTAAATCTCAGAATACTTCTGCAGCCAATGTA
82434300 AAGTAGAATGTGGGTCCTAAATCTCAGAATACTTCTGCAGCCAATGTA
1 AAGTAGAATGTGGGTCCTAAATCTCAGAATACTTCTGCAGCCAATGTA
82434348 GGGAACTCGA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (48 bp):
AAGTAGAATGTGGGTCCTAAATCTCAGAATACTTCTGCAGCCAATGTA
Found at i:82439458 original size:19 final size:20
Alignment explanation
Indices: 82439421--82439458 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
82439411 ATAAGGTGGT
82439421 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
82439441 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
82439459 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:82439646 original size:48 final size:48
Alignment explanation
Indices: 82439571--82439801 Score: 222
Period size: 48 Copynumber: 4.9 Consensus size: 48
82439561 TTCACTGTAG
* ** *
82439571 GATGCCAATGCCATATCCTGGATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* * * ** *
82439619 AATGCCAATGCCATGTCCCAAACATGGTCTTACAGGGGATCGTAGATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* *
82439667 GATGCTAATGTCATGTCCCAGACATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* ** ** ** *
82439715 GATG-C--TG--ATAG-CCTAGTTATGGTCTTACCCGAAATTACATATC
1 GATGCCAATGCCAT-GTCCCAGACATGGTCTTACATGGGATCACATATC
*
82439758 GATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCACA
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACA
82439802 CATAACCTTA
Statistics
Matches: 140, Mismatches: 36, Indels: 14
0.74 0.19 0.07
Matches are distributed among these distances:
43 30 0.21
44 2 0.01
45 2 0.01
46 1 0.01
47 1 0.01
48 104 0.74
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:82447900 original size:40 final size:40
Alignment explanation
Indices: 82447714--82447893 Score: 181
Period size: 40 Copynumber: 4.5 Consensus size: 40
82447704 TGATGTTCGG
* * * *
82447714 GCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCG-
1 GCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGA
* * *
82447753 GACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTCCGG
1 G-CTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCGA
*
82447794 GCTAAG-CTCGAAGGCATTTGTGCGAGTTACTAAATCCGA
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGA
* *
82447833 GTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGA
* *
82447873 GCTATGTCCCGAAGGTATTTG
1 GCTAAGTCCCGAAGGCATTTG
82447894 AACGAGTAGC
Statistics
Matches: 118, Mismatches: 16, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
39 34 0.29
40 73 0.62
41 11 0.09
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGA
Found at i:82447916 original size:79 final size:79
Alignment explanation
Indices: 82447762--82447916 Score: 190
Period size: 79 Copynumber: 2.0 Consensus size: 79
82447752 GGACTAAGAT
* * **
82447762 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCTCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
82447827 ATCCGAGTTAAGTC
66 ATCCGAGTTAAGTC
* * *
82447841 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGTATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
*
82447904 TATATCCG-GTTAA
63 TAAATCCGAGTTAA
82447917 ATTCTGAAGG
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
78 2 0.03
79 39 0.60
80 24 0.37
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGAGTTAAGTC
Found at i:82451725 original size:56 final size:56
Alignment explanation
Indices: 82451664--82451786 Score: 165
Period size: 56 Copynumber: 2.2 Consensus size: 56
82451654 ATGTGATGTG
** * * * **
82451664 CGAGTAAGACCATGTTTAATACATTGTCATTGATATGTGATTCTGTTATATGTGTA
1 CGAGTAAGACCACATTTAATACATTGGCATCGATATGTGACTCCATTATATGTGTA
* *
82451720 CGAGTAAGACCACATTTAATACATTGGCGTCGATATGTGACTCCATTATATGTGTG
1 CGAGTAAGACCACATTTAATACATTGGCATCGATATGTGACTCCATTATATGTGTA
82451776 CGAGTAAGACC
1 CGAGTAAGACC
82451787 CTGTCTGGGG
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
56 58 1.00
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.34
Consensus pattern (56 bp):
CGAGTAAGACCACATTTAATACATTGGCATCGATATGTGACTCCATTATATGTGTA
Found at i:82455308 original size:48 final size:48
Alignment explanation
Indices: 82455237--82455331 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
82455227 ACTGTGATTA
* * *
82455237 ATGATATTTGTGCCTATGTAAGACCATGTCTTGGACATGGCATCGGCG
1 ATGATATGTGTGCCTATATAAGACCATGTCTGGGACATGGCATCGGCG
*
82455285 ATGATATGTGTG-CTAGTATAAGACCATGTCTGGGACATGGCTTCGGC
1 ATGATATGTGTGCCTA-TATAAGACCATGTCTGGGACATGGCATCGGC
82455332 ACTGACATTA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
47 3 0.07
48 39 0.93
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (48 bp):
ATGATATGTGTGCCTATATAAGACCATGTCTGGGACATGGCATCGGCG
Found at i:82455352 original size:48 final size:48
Alignment explanation
Indices: 82455255--82455374 Score: 118
Period size: 48 Copynumber: 2.5 Consensus size: 48
82455245 TGTGCCTATG
* * **
82455255 TAAGACCATGTCTTGGACATGGCATCGGCGATGATATGTGTGCTAGTA
1 TAAGACCATGTCTGGGACATGGCATCGGCGATGACATGTGACCTAGTA
* *
82455303 TAAGACCATGTCTGGGACATGGCTTCGGC-ACTGACAT-TAGACCTTGTA
1 TAAGACCATGTCTGGGACATGGCATCGGCGA-TGACATGT-GACCTAGTA
* * * *
82455351 TAAGACTATATCCGGGATATGGCA
1 TAAGACCATGTCTGGGACATGGCA
82455375 ATGATATGTG
Statistics
Matches: 59, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
47 2 0.03
48 57 0.97
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGGCGATGACATGTGACCTAGTA
Found at i:82461628 original size:450 final size:450
Alignment explanation
Indices: 82460761--82461662 Score: 1554
Period size: 450 Copynumber: 2.0 Consensus size: 450
82460751 TGGCTGAAAC
82460761 TTGCATGGCGAAACCATGTCTAAGGTTTTTCAAGCTTCCAAGCTCGATTGCAAGTCCGTTCTAGC
1 TTGCATGGCGAAACCATGTCTAAGGTTTTTCAAGCTTCCAAGCTCGATTGCAAGTCCGTTCTAGC
* *
82460826 CCCGTTTTTAATGATTTTTATGTTTTTACAATCCCCGTAACAAGATCTATTTATTTCTTCCATTA
66 CCCGTTTTTAATGATTTTTATGTTTTTACAATCCCCGTAACAAGATCTATCTATTTCTACCATTA
* * * *
82460891 ATTTGAGCTAGGGTTCATGTTTAAAAATTGACCCATGTGTGAGATGCATGTATTTTGATGTCTAA
131 ATTTGAGCTAGGGTTCATGTTTAAAAATTGACCCATGTATAAGATGCATGCATTTTGAAGTCTAA
* * * *
82460956 TGGTAGAGAATGAGTGTTGGGTGTTAAATAAATGACTTTTACTAATCAATTTTCGATGAGAACGT
196 TGGTAGAAAATGAGTGTTGGGTGTTAAAAAAACGACTTTTACTAAGCAATTTTCGATGAGAACGT
82461021 CCGAAAGAACCGTTTTGTAAAAGTTATAAAATTGGTCATAAAAGGATAATTTAGTGGAAATTAGA
261 CCGAAAGAACCGTTTTGTAAAAGTTATAAAATTGGTCATAAAAGGATAATTTAGTGGAAATTAGA
** *
82461086 GGCTGCTATAGCTATGAAAATGATTCAACTAGGCTTAAAATGTACGAAAATTGAATAAAAATCAT
326 GAATGCTATAGCTATGAAAATAATTCAACTAGGCTTAAAATGTACGAAAATTGAATAAAAATCAT
*
82461151 TTTACGAGCCTAGGGGAAAAGGTGTAAATATGACAAAGTTTAAGGGCAGAAATGTAAGTT
391 TTTACGAGCCTAGGGGAAAAGGTGTAAATATGACAAAGTTTAAGGGCAAAAATGTAAGTT
* * *
82461211 TTGCATGGCGAAACCATGTCTAGGGTTTTTCAAGCTTCCAAGGTCGATTGCAAGTCTGTTCTAGC
1 TTGCATGGCGAAACCATGTCTAAGGTTTTTCAAGCTTCCAAGCTCGATTGCAAGTCCGTTCTAGC
* *
82461276 CCTGTTTTTAATGATTTTTATGTTTTTGCAATCCCCGTAACAAGATCTATCTATTTCTACCATTA
66 CCCGTTTTTAATGATTTTTATGTTTTTACAATCCCCGTAACAAGATCTATCTATTTCTACCATTA
*
82461341 ATTTGAGCTAGGGTTCATGTTTAAAAATTGACCTATGTATAAGATGCATGCATTTTGAAGTCTAA
131 ATTTGAGCTAGGGTTCATGTTTAAAAATTGACCCATGTATAAGATGCATGCATTTTGAAGTCTAA
*
82461406 TGGTAGAAAATGAGTGTTGGGTGTTAAAAAAACGACTTTTACTAAGCGATTTTCGATGAGAACGT
196 TGGTAGAAAATGAGTGTTGGGTGTTAAAAAAACGACTTTTACTAAGCAATTTTCGATGAGAACGT
* *
82461471 CTGAAAGGACCGTTTTGTAAAAGTTATAAAATTGGTCATAAAAGGATAATTTAGTGGAAATTAGA
261 CCGAAAGAACCGTTTTGTAAAAGTTATAAAATTGGTCATAAAAGGATAATTTAGTGGAAATTAGA
*
82461536 GAATGCTATTAGCTATGAAAATAATTCGACTAGGCTTAAAATGTACGAAAATTGAATAAAAATCA
326 GAATGCTA-TAGCTATGAAAATAATTCAACTAGGCTTAAAATGTACGAAAATTGAATAAAAATCA
* *
82461601 TTTTACGAGCCTAGGGGAAAA-GTGTAAATATGTCAAAGTTTAAGGGCAAAAATGTAATTT
390 TTTTACGAGCCTAGGGGAAAAGGTGTAAATATGACAAAGTTTAAGGGCAAAAATGTAAGTT
82461661 TT
1 TT
82461663 CCATAATATG
Statistics
Matches: 425, Mismatches: 26, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
450 350 0.82
451 75 0.18
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.34
Consensus pattern (450 bp):
TTGCATGGCGAAACCATGTCTAAGGTTTTTCAAGCTTCCAAGCTCGATTGCAAGTCCGTTCTAGC
CCCGTTTTTAATGATTTTTATGTTTTTACAATCCCCGTAACAAGATCTATCTATTTCTACCATTA
ATTTGAGCTAGGGTTCATGTTTAAAAATTGACCCATGTATAAGATGCATGCATTTTGAAGTCTAA
TGGTAGAAAATGAGTGTTGGGTGTTAAAAAAACGACTTTTACTAAGCAATTTTCGATGAGAACGT
CCGAAAGAACCGTTTTGTAAAAGTTATAAAATTGGTCATAAAAGGATAATTTAGTGGAAATTAGA
GAATGCTATAGCTATGAAAATAATTCAACTAGGCTTAAAATGTACGAAAATTGAATAAAAATCAT
TTTACGAGCCTAGGGGAAAAGGTGTAAATATGACAAAGTTTAAGGGCAAAAATGTAAGTT
Found at i:82462282 original size:48 final size:48
Alignment explanation
Indices: 82462211--82462347 Score: 152
Period size: 48 Copynumber: 2.9 Consensus size: 48
82462201 CGCTGTGATT
* * *
82462211 AATGATATTTGTGCCTGTGTAAGACCATGTCTGGGACATGGCATTGGC
1 AATGATATGTGTGCCTGTATAAGACCATGTCTGGGACATGGCATCGGC
82462259 AATGATATGTGTG-CTAGTATAAGACCATGTCTGGGACATGGCATCGGC
1 AATGATATGTGTGCCT-GTATAAGACCATGTCTGGGACATGGCATCGGC
* * * * * * *
82462307 ACTGACATGAG-ACCTTCTATAAGACCATATCTGGGATATGG
1 AATGATATGTGTGCC-TGTATAAGACCATGTCTGGGACATGG
82462348 AAAGGATATA
Statistics
Matches: 76, Mismatches: 10, Indels: 6
0.83 0.11 0.07
Matches are distributed among these distances:
47 2 0.03
48 73 0.96
49 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (48 bp):
AATGATATGTGTGCCTGTATAAGACCATGTCTGGGACATGGCATCGGC
Found at i:82467729 original size:42 final size:43
Alignment explanation
Indices: 82467640--82467753 Score: 103
Period size: 43 Copynumber: 2.7 Consensus size: 43
82467630 CTAGACGTGG
* * *
82467640 TCTTACATGTAATCAAATATCGATGCCACTATTCTAGACAAGG
1 TCTTACATGAAATCAAATATCGATGCCACTATTCCAGACAAGA
* *
82467683 TCTTACATGAAATCATATA-CGATG-C-CTATGTCCCAGACATGA
1 TCTTACATGAAATCAAATATCGATGCCACTAT-T-CCAGACAAGA
82467725 TCTTACACAT-AAATCACAA-ATCGATGCCA
1 TCTT--ACATGAAATCA-AATATCGATGCCA
82467754 ACGTCCCAAA
Statistics
Matches: 57, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
40 4 0.07
41 2 0.04
42 16 0.28
43 24 0.42
44 10 0.18
45 1 0.02
ACGTcount: A:0.36, C:0.24, G:0.12, T:0.28
Consensus pattern (43 bp):
TCTTACATGAAATCAAATATCGATGCCACTATTCCAGACAAGA
Found at i:82473693 original size:78 final size:78
Alignment explanation
Indices: 82473594--82473837 Score: 488
Period size: 78 Copynumber: 3.1 Consensus size: 78
82473584 TTCGATTCCA
82473594 AACTCAATTTCTCTAATTAGAGGCAATCCAGGAAACTCTTTCGGGAATACATTTGGATATTCACA
1 AACTCAATTTCTCTAATTAGAGGCAATCCAGGAAACTCTTTCGGGAATACATTTGGATATTCACA
82473659 TACTATCGGCACT
66 TACTATCGGCACT
82473672 AACTCAATTTCTCTAATTAGAGGCAATCCAGGAAACTCTTTCGGGAATACATTTGGATATTCACA
1 AACTCAATTTCTCTAATTAGAGGCAATCCAGGAAACTCTTTCGGGAATACATTTGGATATTCACA
82473737 TACTATCGGCACT
66 TACTATCGGCACT
82473750 AACTCAATTTCTCTAATTAGAGGCAATCCAGGAAACTCTTTCGGGAATACATTTGGATATTCACA
1 AACTCAATTTCTCTAATTAGAGGCAATCCAGGAAACTCTTTCGGGAATACATTTGGATATTCACA
82473815 TACTATCGGCACT
66 TACTATCGGCACT
82473828 AACTCAATTT
1 AACTCAATTT
82473838 TCAACTCAAA
Statistics
Matches: 166, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
78 166 1.00
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (78 bp):
AACTCAATTTCTCTAATTAGAGGCAATCCAGGAAACTCTTTCGGGAATACATTTGGATATTCACA
TACTATCGGCACT
Found at i:82475379 original size:51 final size:50
Alignment explanation
Indices: 82475259--82475639 Score: 461
Period size: 51 Copynumber: 7.6 Consensus size: 50
82475249 ATCTGATATG
* * *
82475259 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATC-TGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGATCAACAGTCATGGTACA
* *
82475308 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCAA-AGTCATTGAGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGATCAACAGTCA-TG-GTACA
* * *
82475359 CATAGTAGCCTACACTTAGTACTACACATGCGACTTAACAGT-ATGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGA-TCAACAGTCATGGTACA
* *
82475409 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCAA-AGTCATTGAGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGATCAACAGTCA-TG-GTACA
* * *
82475460 CATAGTAGCCTACACTTAGTACTACACATGCGACTTAACAGT-ATGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGA-TCAACAGTCATGGTACA
* *
82475510 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCAA-AGTCATTGAGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGATCAACAGTCA-TG-GTACA
* * *
82475561 CATAGTAGCCTACACTTAGTACTACACATGCGACTTAACAGT-ATGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGA-TCAACAGTCATGGTACA
*
82475611 CGTAGTAGCCTGCACTTAGTACTACACAC
1 CATAGTAGCCTGCACTTAGTACTACACAC
82475640 ATGTATTCAC
Statistics
Matches: 284, Mismatches: 33, Indels: 29
0.82 0.10 0.08
Matches are distributed among these distances:
48 9 0.03
49 41 0.14
50 105 0.37
51 108 0.38
52 12 0.04
53 9 0.03
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGATCAACAGTCATGGTACA
Found at i:82475439 original size:101 final size:101
Alignment explanation
Indices: 82475259--82475639 Score: 719
Period size: 101 Copynumber: 3.8 Consensus size: 101
82475249 ATCTGATATG
* * * *
82475259 CATAGTAGCCTGCACTTAGTACTACACATGCGAC-CAACAATCTGGTACACGTAGTAGCCTGCAC
1 CATAGTAGCCTACACTTAGTACTACACATGCGACTTAACAGTATGGTACACGTAGTAGCCTGCAC
82475323 TTAGTACTACACACGTGATCAAAGTCATTGAGTACA
66 TTAGTACTACACACGTGATCAAAGTCATTGAGTACA
82475359 CATAGTAGCCTACACTTAGTACTACACATGCGACTTAACAGTATGGTACACGTAGTAGCCTGCAC
1 CATAGTAGCCTACACTTAGTACTACACATGCGACTTAACAGTATGGTACACGTAGTAGCCTGCAC
82475424 TTAGTACTACACACGTGATCAAAGTCATTGAGTACA
66 TTAGTACTACACACGTGATCAAAGTCATTGAGTACA
82475460 CATAGTAGCCTACACTTAGTACTACACATGCGACTTAACAGTATGGTACACGTAGTAGCCTGCAC
1 CATAGTAGCCTACACTTAGTACTACACATGCGACTTAACAGTATGGTACACGTAGTAGCCTGCAC
82475525 TTAGTACTACACACGTGATCAAAGTCATTGAGTACA
66 TTAGTACTACACACGTGATCAAAGTCATTGAGTACA
82475561 CATAGTAGCCTACACTTAGTACTACACATGCGACTTAACAGTATGGTACACGTAGTAGCCTGCAC
1 CATAGTAGCCTACACTTAGTACTACACATGCGACTTAACAGTATGGTACACGTAGTAGCCTGCAC
82475626 TTAGTACTACACAC
66 TTAGTACTACACAC
82475640 ATGTATTCAC
Statistics
Matches: 276, Mismatches: 4, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
100 33 0.12
101 243 0.88
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (101 bp):
CATAGTAGCCTACACTTAGTACTACACATGCGACTTAACAGTATGGTACACGTAGTAGCCTGCAC
TTAGTACTACACACGTGATCAAAGTCATTGAGTACA
Done.