Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 249 of 276
Found at i:82481729 original size:40 final size:41
Alignment explanation
Indices: 82481685--82481782 Score: 146
Period size: 40 Copynumber: 2.4 Consensus size: 41
82481675 CGACTATGAT
*
82481685 TGGCACTAAGTGTGCGATTTAATATAGCTTCGGCTATA-AA
1 TGGCACTAAGTGTGCGATTTAACATAGCTTCGGCTATAGAA
* **
82481725 TGGCACTAAGTGTGCGAGTTGGCATAGCTTCGGCTATAGAA
1 TGGCACTAAGTGTGCGATTTAACATAGCTTCGGCTATAGAA
82481766 -GGCACTAAGTGTGCGAT
1 TGGCACTAAGTGTGCGAT
82481783 ACCAATTTTT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
40 50 0.96
41 2 0.04
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (41 bp):
TGGCACTAAGTGTGCGATTTAACATAGCTTCGGCTATAGAA
Found at i:82486936 original size:27 final size:27
Alignment explanation
Indices: 82486906--82487058 Score: 76
Period size: 27 Copynumber: 5.2 Consensus size: 27
82486896 ATCATCAAGC
82486906 TAGTCTCATATCAATACATCATGTCAT
1 TAGTCTCATATCAATACATCATGTCAT
* * * *
82486933 TAGTCTTAGATGAGCATA-ACTCAATCATCAAGT
1 TAGTCTCATATCA--ATACA-TC-AT-GTC-A-T
*
82486966 TAATCTCATATCAATACATCATGTCAT
1 TAGTCTCATATCAATACATCATGTCAT
* * * *
82486993 TAGTCTTAGATGAGCATA-ACTCAATCATCAAGT
1 TAGTCTCATATCA--ATACA-TC-AT-GTC-A-T
*
82487026 TAATCTCATATCAATACATCATGTCAT
1 TAGTCTCATATCAATACATCATGTCAT
82487053 TAGTCT
1 TAGTCT
82487059 TAGATGAGCT
Statistics
Matches: 90, Mismatches: 20, Indels: 32
0.63 0.14 0.23
Matches are distributed among these distances:
27 26 0.29
28 4 0.04
29 14 0.16
30 8 0.09
31 14 0.16
32 4 0.04
33 20 0.22
ACGTcount: A:0.35, C:0.20, G:0.10, T:0.35
Consensus pattern (27 bp):
TAGTCTCATATCAATACATCATGTCAT
Found at i:82486982 original size:60 final size:60
Alignment explanation
Indices: 82486889--82487067 Score: 340
Period size: 60 Copynumber: 3.0 Consensus size: 60
82486879 CCTATCACAT
* *
82486889 TAACTCAATCATCAAGCTAGTCTCATATCAATACATCATGTCATTAGTCTTAGATGAGCA
1 TAACTCAATCATCAAGTTAATCTCATATCAATACATCATGTCATTAGTCTTAGATGAGCA
82486949 TAACTCAATCATCAAGTTAATCTCATATCAATACATCATGTCATTAGTCTTAGATGAGCA
1 TAACTCAATCATCAAGTTAATCTCATATCAATACATCATGTCATTAGTCTTAGATGAGCA
82487009 TAACTCAATCATCAAGTTAATCTCATATCAATACATCATGTCATTAGTCTTAGATGAGC
1 TAACTCAATCATCAAGTTAATCTCATATCAATACATCATGTCATTAGTCTTAGATGAGC
82487068 TCATCAATTC
Statistics
Matches: 117, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 117 1.00
ACGTcount: A:0.36, C:0.21, G:0.11, T:0.33
Consensus pattern (60 bp):
TAACTCAATCATCAAGTTAATCTCATATCAATACATCATGTCATTAGTCTTAGATGAGCA
Found at i:82491968 original size:47 final size:47
Alignment explanation
Indices: 82491905--82492257 Score: 310
Period size: 47 Copynumber: 7.6 Consensus size: 47
82491895 TGCGAATGTT
82491905 CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATC
* * *
82491952 CGAACTCATTGAGTTGAGTCCGAGTTCACTTGTG-GATGCGAAC---GC--C
1 CGAACTCGTTGAGTTGAGTCCGAGTT--C--GTGAAATG-TAACTAGGCATC
* *
82491998 CGAGCTTGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATC
* * *
82492045 CGAACTCATTGAGTTGAGTCCGAGTTCACTTGTG-GATGCGAAC---GC--C
1 CGAACTCGTTGAGTTGAGTCCGAGTT--C--GTGAAATG-TAACTAGGCATC
* *
82492091 CGAGCTTGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATC
* * *
82492138 CGAACTCATTGAGTTGAGTCCGAGTTCACTTGTG-GATGCGAAC---GC--C
1 CGAACTCGTTGAGTTGAGTCCGAGTT--C--GTGAAATG-TAACTAGGCATC
* *
82492184 CGAGCTTGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATC
82492231 CGAACTCGTTGAGTTGAGTCCGAGTTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTC
82492258 ACTTAGGGGC
Statistics
Matches: 243, Mismatches: 30, Indels: 66
0.72 0.09 0.19
Matches are distributed among these distances:
42 18 0.07
43 9 0.04
44 3 0.01
45 6 0.02
46 72 0.30
47 99 0.41
48 6 0.02
49 3 0.01
50 9 0.04
51 18 0.07
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (47 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATC
Found at i:82492013 original size:93 final size:93
Alignment explanation
Indices: 82491854--82492261 Score: 728
Period size: 93 Copynumber: 4.4 Consensus size: 93
82491844 GGATGGTTGA
* * * ** * *
82491854 GCATCCGAACTC-GTGCAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAG
1 GCATCCGAACTCATTG-AGTTGAGTCCGAGTTCACTTGTGGATGCGAACGCCCGAGCTTGTTGAG
82491918 TTGAGTCCGAGTTCGTGAAATGTAACTAG
65 TTGAGTCCGAGTTCGTGAAATGTAACTAG
82491947 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACGCCCGAGCTTGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACGCCCGAGCTTGTTGAGT
82492012 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
82492040 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACGCCCGAGCTTGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACGCCCGAGCTTGTTGAGT
82492105 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
82492133 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACGCCCGAGCTTGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACGCCCGAGCTTGTTGAGT
82492198 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
82492226 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTT
82492262 AGGGGCGGGT
Statistics
Matches: 306, Mismatches: 8, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
93 304 0.99
94 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACGCCCGAGCTTGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:82492024 original size:46 final size:46
Alignment explanation
Indices: 82491960--82492210 Score: 234
Period size: 46 Copynumber: 5.4 Consensus size: 46
82491950 TCCGAACTCA
82491960 TTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACGCCCGAGCTTG
1 TTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACGCCCGAGCTTG
* * * **
82492006 TTGAGTTGAGTCCGAGTT--C--GTGAAATG-TAACTAGGCATCCGAACTCA
1 TTGAGTTGAGTCCGAGTTCACTTGTG-GATGCGAAC---GC--CCGAGCTTG
82492053 TTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACGCCCGAGCTTG
1 TTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACGCCCGAGCTTG
* * * **
82492099 TTGAGTTGAGTCCGAGTT--C--GTGAAATG-TAACTAGGCATCCGAACTCA
1 TTGAGTTGAGTCCGAGTTCACTTGTG-GATGCGAAC---GC--CCGAGCTTG
82492146 TTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACGCCCGAGCTTG
1 TTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACGCCCGAGCTTG
82492192 TTGAGTTGAGTCCGAGTTC
1 TTGAGTTGAGTCCGAGTTC
82492211 GTGAAATGTA
Statistics
Matches: 163, Mismatches: 20, Indels: 44
0.72 0.09 0.19
Matches are distributed among these distances:
42 12 0.07
43 6 0.04
44 2 0.01
45 4 0.02
46 67 0.41
47 48 0.29
48 4 0.02
49 2 0.01
50 6 0.04
51 12 0.07
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACGCCCGAGCTTG
Found at i:82500201 original size:93 final size:93
Alignment explanation
Indices: 82499659--82500200 Score: 967
Period size: 93 Copynumber: 5.8 Consensus size: 93
82499649 GGATGGTTGA
*
82499659 GCATCCGAACTCGTGGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
82499724 TGAGTCGGAGTTTGTGAAATGTAAGTAG
66 TGAGTCGGAGTTTGTGAAATGTAAGTAG
82499752 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
82499817 TGAGTCGGAGTTTGTGAAATGTAAGTAG
66 TGAGTCGGAGTTTGTGAAATGTAAGTAG
82499845 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
82499910 TGAGTCGGAGTTTGTGAAATGTAAGTAG
66 TGAGTCGGAGTTTGTGAAATGTAAGTAG
82499938 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
82500003 TGAGTCGGAGTTTGTGAAATGTAAGTAG
66 TGAGTCGGAGTTTGTGAAATGTAAGTAG
* * * *
82500031 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
* * *
82500096 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCGGAGTTTGTGAAATGTAAGTAG
* * * *
82500124 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
*
82500189 TGAGTCCGAGTT
66 TGAGTCGGAGTT
82500201 CACTTAGAGG
Statistics
Matches: 441, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
93 441 1.00
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCGGAGTTTGTGAAATGTAAGTAG
Found at i:82506553 original size:40 final size:40
Alignment explanation
Indices: 82506509--82506770 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
82506499 GCTCCTCGTT
* *
82506509 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
82506549 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
82506589 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
82506628 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
82506667 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
82506706 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
82506747 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
82506771 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:82514580 original size:93 final size:93
Alignment explanation
Indices: 82514419--82514604 Score: 266
Period size: 93 Copynumber: 2.0 Consensus size: 93
82514409 AAATTCAAGC
* *
82514419 ACATACGAAACATACCTCAATGTTGGGATGTTTCGAGAGTATTAACTGGAATTTTACAGCAAGTT
1 ACATACGAAACATACCTCAATATTGGGATGTTTCGAGAGTATTAACTGGAATTTTACAGCAAGCT
*
82514484 CATTCATTCCCAAATCACGTACCTTCGG
66 CATTCATTACCAAATCACGTACCTTCGG
* * *** **
82514512 ACATACGTAACATATCC-CCATATTGGGATGTTTTTCGAGTATTCGCTGGAATTTTACAGCAAGC
1 ACATACGAAACATA-CCTCAATATTGGGATGTTTCGAGAGTATTAACTGGAATTTTACAGCAAGC
82514576 TCATTCATTACCAAATCACGTACCTTCGG
65 TCATTCATTACCAAATCACGTACCTTCGG
82514605 GATTTAACCG
Statistics
Matches: 82, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
93 80 0.98
94 2 0.02
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.31
Consensus pattern (93 bp):
ACATACGAAACATACCTCAATATTGGGATGTTTCGAGAGTATTAACTGGAATTTTACAGCAAGCT
CATTCATTACCAAATCACGTACCTTCGG
Found at i:82514734 original size:79 final size:80
Alignment explanation
Indices: 82514633--82514779 Score: 242
Period size: 79 Copynumber: 1.9 Consensus size: 80
82514623 TCCTCGTTCA
* *
82514633 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGGAT
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCACACGAATGCCTTCGGGACATAACCCGGAT
82514697 TTAACAATTCGCACG
66 TTAACAATTCGCACG
* * *
82514712 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCACACGAATGCCTTCGGGACATAACCCGGAT
82514777 TTA
66 TTA
82514780 GTATCTCGCA
Statistics
Matches: 62, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
79 35 0.56
80 27 0.44
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACATAACCCGGATTTAATAACTCACACGAATGCCTTCGGGACATAACCCGGAT
TTAACAATTCGCACG
Found at i:82514815 original size:40 final size:40
Alignment explanation
Indices: 82514633--82514855 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
82514623 TCCTCGTTCA
* * * *
82514633 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
82514672 AATGCCTTCGGGACATAACCCGGATTTAACAATTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
82514712 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
82514752 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
82514792 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
82514832 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
82514856 CAGCATTCAA
Statistics
Matches: 159, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 114 0.72
41 8 0.05
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:82514864 original size:41 final size:41
Alignment explanation
Indices: 82514787--82514864 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
82514777 TTAGTATCTC
* * *
82514787 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
82514828 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
82514865 AATAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:82515276 original size:79 final size:79
Alignment explanation
Indices: 82515142--82515293 Score: 207
Period size: 79 Copynumber: 1.9 Consensus size: 79
82515132 AATTGATTTC
* * *
82515142 ATCATTTAGGCATCAAAAAGATGAACACAAGGCACTTAGCCCATATTTATACATTAGACATTAAA
1 ATCATTTAGGCATCAAAAAGAGGAACACAAGGCACTTAGCCCACATATATACATTAGACATTAAA
*
82515207 GTCTCATACATGCA
66 GTCACATACATGCA
* * * * *
82515221 ATCATTT-GAGCATCGAAAAGAGGAACTCAAGGTACTTGGCCCACATATATTCATTAGACATTAA
1 ATCATTTAG-GCATCAAAAAGAGGAACACAAGGCACTTAGCCCACATATATACATTAGACATTAA
82515285 AGTCACATA
65 AGTCACATA
82515294 TGTACGGAAT
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
78 1 0.02
79 62 0.98
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.26
Consensus pattern (79 bp):
ATCATTTAGGCATCAAAAAGAGGAACACAAGGCACTTAGCCCACATATATACATTAGACATTAAA
GTCACATACATGCA
Found at i:82515869 original size:60 final size:60
Alignment explanation
Indices: 82515796--82515908 Score: 226
Period size: 60 Copynumber: 1.9 Consensus size: 60
82515786 TAACTCATCC
82515796 TCATGCCTCATCACCACAACATCAAACATCAACCAAGAATGATGCATCCATGGCCGAGTG
1 TCATGCCTCATCACCACAACATCAAACATCAACCAAGAATGATGCATCCATGGCCGAGTG
82515856 TCATGCCTCATCACCACAACATCAAACATCAACCAAGAATGATGCATCCATGG
1 TCATGCCTCATCACCACAACATCAAACATCAACCAAGAATGATGCATCCATGG
82515909 TCAAGTGCCA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 53 1.00
ACGTcount: A:0.36, C:0.32, G:0.13, T:0.19
Consensus pattern (60 bp):
TCATGCCTCATCACCACAACATCAAACATCAACCAAGAATGATGCATCCATGGCCGAGTG
Found at i:82518210 original size:15 final size:15
Alignment explanation
Indices: 82518190--82518258 Score: 75
Period size: 15 Copynumber: 4.6 Consensus size: 15
82518180 GTATCTTGGG
82518190 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* * *
82518205 TCTCTTTATTCTAGA
1 TTTCTTTATCCTGGA
* *
82518220 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
82518235 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
82518250 TTTCTTTAT
1 TTTCTTTAT
82518259 TCGGTTTTCT
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 43 1.00
ACGTcount: A:0.13, C:0.17, G:0.12, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:82518252 original size:30 final size:30
Alignment explanation
Indices: 82518181--82518277 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
82518171 CATAGTATCG
* * * *
82518181 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
* *
82518211 TAT-TCTAGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
82518241 TATCTTGGATTTCTTTATTC-GGTTTTCTTGC
1 TATCTTGGATTTCTTTATTCTGGATTTC-T-C
82518272 TATCTT
1 TATCTT
82518278 TGTTCCATAA
Statistics
Matches: 55, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
29 7 0.13
30 40 0.73
31 8 0.15
ACGTcount: A:0.11, C:0.18, G:0.14, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:82518269 original size:14 final size:14
Alignment explanation
Indices: 82518190--82518269 Score: 61
Period size: 15 Copynumber: 5.4 Consensus size: 14
82518180 GTATCTTGGG
*
82518190 TTTCTTTATCCTGGA
1 TTTCTTTATTC-GGA
* *
82518205 TCTCTTTATTCTAGA
1 TTTCTTTATTC-GGA
*
82518220 TTTCTTTATTCTGGG
1 TTTCTTTATTC-GGA
* *
82518235 TTTCTCTATCTTGGA
1 TTTCTTTAT-TCGGA
*
82518250 TTTCTTTATTCGGT
1 TTTCTTTATTCGGA
82518264 TTTCTT
1 TTTCTT
82518270 GCTATCTTTG
Statistics
Matches: 52, Mismatches: 12, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
14 9 0.17
15 42 0.81
16 1 0.02
ACGTcount: A:0.11, C:0.17, G:0.12, T:0.59
Consensus pattern (14 bp):
TTTCTTTATTCGGA
Found at i:82519625 original size:63 final size:63
Alignment explanation
Indices: 82519549--82519674 Score: 225
Period size: 63 Copynumber: 2.0 Consensus size: 63
82519539 TCGAATAATT
*
82519549 TGTAAAACTTGCATTCTAGAAGTTTCTAGTATGAAATTGTTTTGAAATATTAATTATGAGGTC
1 TGTAAAACTTGCATTCTAGAAGTTTCTAGTATGAAATTGTTTTGAAATATTAATTAGGAGGTC
* *
82519612 TGTAAAACTTGCATTCTAGAAGTTTCTGGTATGAAATTGTTTTGAAATGTTAATTAGGAGGTC
1 TGTAAAACTTGCATTCTAGAAGTTTCTAGTATGAAATTGTTTTGAAATATTAATTAGGAGGTC
82519675 ATAAATAGAA
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (63 bp):
TGTAAAACTTGCATTCTAGAAGTTTCTAGTATGAAATTGTTTTGAAATATTAATTAGGAGGTC
Found at i:82522752 original size:139 final size:146
Alignment explanation
Indices: 82522485--82522757 Score: 364
Period size: 139 Copynumber: 1.9 Consensus size: 146
82522475 GGATAAGTTA
* * *
82522485 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTCATCGAAGCCGATGCCATGTCCCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCACCGAAGCCAATGCCATGTCCCA
* * *
82522550 AACATGGTCTTACACTAGCTCTCATATATATACGTGCTAATGCCATGTCCCAGACATCATCTTAT
66 AACATGGTCTTACACTAGCACTCATATATATAC-TGCCAATGCCATGTCCCAGACATCATCTTAC
82522615 ACTAGCACAACTCTCAG
130 ACTAGCACAACTCTCAG
* *
82522632 CCGATG-CATGTCCCAGACAT-TTCTTACACTGGCTATCATCACCGAGGCCAATG-CATGTCCCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCACCGAAGCCAATGCCATGTCCCA
* * **
82522694 AACAT-GTCTTACACTAGCACTCGT-T-TCA-A-TGCCGATGCCATGTCCCAGACATGGTCTTAC
66 AACATGGTCTTACACTAGCACTCATATAT-ATACTGCCAATGCCATGTCCCAGACATCATCTTAC
82522754 ACTA
130 ACTA
82522758 TCTCTCGTAA
Statistics
Matches: 113, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
139 30 0.27
141 2 0.02
142 2 0.02
143 17 0.15
144 14 0.12
145 28 0.25
146 14 0.12
147 6 0.05
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.26
Consensus pattern (146 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCACCGAAGCCAATGCCATGTCCCA
AACATGGTCTTACACTAGCACTCATATATATACTGCCAATGCCATGTCCCAGACATCATCTTACA
CTAGCACAACTCTCAG
Found at i:82522780 original size:94 final size:96
Alignment explanation
Indices: 82522488--82522807 Score: 302
Period size: 94 Copynumber: 3.4 Consensus size: 96
82522478 TAAGTTACCG
* * *
82522488 ATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TCGTCATCGAAGCCGATGCCATGTCCCAAA
1 ATGCCATGTCCCAGACATCGTCTTACACTAGC-ACTCGT-ATC-AAGCCGATGCCATGTCCCAGA
* *
82522552 CATGGTCTTACACTAGCTCTCATATATATACGTGCTA
63 CATGGTCTTACACTAGCTCTCATACATAT--G-GCCA
* * * *
82522589 ATGCCATGTCCCAGACATCATCTTATACTAGCACAAC-TCTC-AGCCGATG-CATGTCCCAGACA
1 ATGCCATGTCCCAGACATCGTCTTACACTAGCAC-TCGTATCAAGCCGATGCCATGTCCCAGACA
* * * **
82522651 T-TTCTTACACTGGCTATCATCACCGA-GGCCA
65 TGGTCTTACACTAGCTCTCAT-ACATATGGCCA
* *
82522682 ATG-CATGTCCCAAACAT-GTCTTACACTAGCACTCGTTTCAATGCCGATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATCGTCTTACACTAGCACTCGTATCAA-GCCGATGCCATGTCCCAGACA
* * *
82522745 TGGTCTTACACTATCTCTCGTA-ATATGGCCG
65 TGGTCTTACACTAGCTCTCATACATATGGCCA
*
82522776 ATG-CATGTCGCAGACAT-GTCTTACACTAGCAC
1 ATGCCATGTCCCAGACATCGTCTTACACTAGCAC
82522808 ACACATAACC
Statistics
Matches: 181, Mismatches: 29, Indels: 25
0.77 0.12 0.11
Matches are distributed among these distances:
90 1 0.01
91 16 0.09
92 14 0.08
93 14 0.08
94 50 0.28
95 14 0.08
96 16 0.09
97 15 0.08
98 8 0.04
100 3 0.02
101 29 0.16
102 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (96 bp):
ATGCCATGTCCCAGACATCGTCTTACACTAGCACTCGTATCAAGCCGATGCCATGTCCCAGACAT
GGTCTTACACTAGCTCTCATACATATGGCCA
Found at i:82522783 original size:47 final size:47
Alignment explanation
Indices: 82522485--82522805 Score: 196
Period size: 47 Copynumber: 6.7 Consensus size: 47
82522475 GGATAAGTTA
* * * *
82522485 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTCATCGA-AG
1 CCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTCTCGTAAT--ATGG
* *
82522534 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATATATACGTG
1 CCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTCTCGTA-ATAT--G-G
** * * * * *
82522586 CTAATGCCATGTCCCAGACATCATCTTATACTAG--CAC--AACTCTCAG
1 CCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTCTCGTAA-TAT-GG
* * * * **
82522632 CCGATG-CATGTCCCAGACATTTCTTACACTGGCTATCATCACCGA-GG
1 CCGATGCCATGTCCCAGACATGTCTTACACTAGCTCTCGT-A-ATATGG
* * * *
82522679 CCAATG-CATGTCCCAAACATGTCTTACACTAGCACTCGT-TTCAAT-G
1 CCGATGCCATGTCCCAGACATGTCTTACACTAGCTCTCGTAAT--ATGG
*
82522725 CCGATGCCATGTCCCAGACATGGTCTTACACTATCTCTCGTAATATGG
1 CCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTCTCGTAATATGG
*
82522773 CCGATG-CATGTCGCAGACATGTCTTACACTAGC
1 CCGATGCCATGTCCCAGACATGTCTTACACTAGC
82522806 ACACACATAA
Statistics
Matches: 211, Mismatches: 42, Indels: 41
0.72 0.14 0.14
Matches are distributed among these distances:
44 9 0.04
45 14 0.07
46 25 0.12
47 63 0.30
48 28 0.13
49 39 0.18
50 4 0.02
52 29 0.14
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.27
Consensus pattern (47 bp):
CCGATGCCATGTCCCAGACATGTCTTACACTAGCTCTCGTAATATGG
Found at i:82530229 original size:52 final size:49
Alignment explanation
Indices: 82530104--82530422 Score: 227
Period size: 47 Copynumber: 6.7 Consensus size: 49
82530094 ATAAGTTGCC
*
82530104 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTCATTGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCGTCATTGAGGCT
* *
82530153 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGT-ATATATACGTGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCGTCAT-T-GA-G-GCT
* * ** * * *
82530205 GATGCCATGTCCCAGACATCGTCTTATACTAGC-A-CAAC-TCTCA-ACC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCGTCAT-TGAGGCT
* * * * * *
82530251 GATG-CATGTCCCAAACAT-GTCTTACACTGGCTATCATTATCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCGTCATTGAGGCT
* * * * *
82530298 GATG-CATGTGCCAAACAT-GTCTTACAATAGC-ACTCGTC-TTAATGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTA-TCGTCATTGAGGCT
* * * * *
82530344 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAG--AATGTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATC-GTCATTGAGGCT
*
82530392 GATG-CATGTCCCAAACAT-GTCTTACACTAGC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC
82530423 ACACAAATAA
Statistics
Matches: 214, Mismatches: 41, Indels: 33
0.74 0.14 0.11
Matches are distributed among these distances:
44 11 0.05
45 14 0.07
46 29 0.14
47 59 0.28
48 22 0.10
49 40 0.19
50 4 0.02
51 1 0.00
52 34 0.16
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCGTCATTGAGGCT
Found at i:82530363 original size:94 final size:95
Alignment explanation
Indices: 82530101--82530424 Score: 317
Period size: 94 Copynumber: 3.4 Consensus size: 95
82530091 GGGATAAGTT
* * * *
82530101 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TCGTCATTGAGGCTGATGCCATGTCC
1 GCCGATGCCATGTCCCAAACATCGTCTTACACTAGC-ACTCGTC-TT-AAGCTGATGCCATGTCC
* *
82530165 CAGACATGGTCTTACACTAGCTCTCGTATATATACGT
63 CAGACATGGTCTTACACTGGCTCTC--AT-TAT-CGG
* * * * * *
82530202 GCTGATGCCATGTCCCAGACATCGTCTTATACTAGCACAAC-TCTCAA-CCGATG-CATGTCCCA
1 GCCGATGCCATGTCCCAAACATCGTCTTACACTAGCAC-TCGTCTTAAGCTGATGCCATGTCCCA
* *
82530264 AACAT-GTCTTACACTGGCTATCATTATCGAG
65 GACATGGTCTTACACTGGCTCTCATTATCG-G
* *
82530295 GCCGATG-CATGTGCCAAACAT-GTCTTACAATAGCACTCGTCTTAATGCTGATGCCATGTCCCA
1 GCCGATGCCATGTCCCAAACATCGTCTTACACTAGCACTCGTCTTAA-GCTGATGCCATGTCCCA
**
82530358 GACATGGTCTTACACTGGCTCTCAGAAT-GTG
65 GACATGGTCTTACACTGGCTCTCATTATCG-G
82530389 GCCGATG-CATGTCCCAAACAT-GTCTTACACTAGCAC
1 GCCGATGCCATGTCCCAAACATCGTCTTACACTAGCAC
82530425 ACAAATAACT
Statistics
Matches: 188, Mismatches: 27, Indels: 23
0.79 0.11 0.10
Matches are distributed among these distances:
90 1 0.01
91 18 0.10
92 14 0.07
93 14 0.07
94 51 0.27
95 19 0.10
96 15 0.08
97 13 0.07
98 5 0.03
99 1 0.01
100 2 0.01
101 34 0.18
102 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (95 bp):
GCCGATGCCATGTCCCAAACATCGTCTTACACTAGCACTCGTCTTAAGCTGATGCCATGTCCCAG
ACATGGTCTTACACTGGCTCTCATTATCGG
Found at i:82531668 original size:6 final size:6
Alignment explanation
Indices: 82531659--82531737 Score: 72
Period size: 6 Copynumber: 12.8 Consensus size: 6
82531649 TATTAGAACT
* *
82531659 AGAATC AGAATC AGAATC AGAATC AG-GTGAC AGAATC AAAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* *
82531708 AGTATC AGGTAA-C AGAATC AAAATC AGAAT
1 AGAATC A-G-AATC AGAATC AGAATC AGAAT
82531738 GTGAATGCAA
Statistics
Matches: 59, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
5 3 0.05
6 48 0.81
7 6 0.10
8 2 0.03
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:82531695 original size:31 final size:31
Alignment explanation
Indices: 82531659--82531737 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
82531649 TATTAGAACT
* *
82531659 AGAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
*
82531690 AGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
82531721 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
82531738 GTGAATGCAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGAATCAGGTAAC
Found at i:82532161 original size:27 final size:27
Alignment explanation
Indices: 82532131--82532208 Score: 84
Period size: 27 Copynumber: 2.9 Consensus size: 27
82532121 AGGGGCAAAA
*
82532131 TGGTAATTTTACAAACCAGGGGTATTT
1 TGGTAATTTTACAAACCAAGGGTATTT
**
82532158 TGGTAATTTTGTAAACCAAGGGTATTT
1 TGGTAATTTTACAAACCAAGGGTATTT
** ** *
82532185 CAGTAATTTTGTAAATCAAGGGTA
1 TGGTAATTTTACAAACCAAGGGTA
82532209 AAATGGTAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.32, C:0.09, G:0.22, T:0.37
Consensus pattern (27 bp):
TGGTAATTTTACAAACCAAGGGTATTT
Found at i:82532216 original size:54 final size:54
Alignment explanation
Indices: 82532187--82532354 Score: 273
Period size: 54 Copynumber: 3.1 Consensus size: 54
82532177 GGGTATTTCA
* * * *
82532187 GTAATTTTGTAAATCAAGGGTAAAATGGTAATTCTATAAATCGAGAGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAATG
* *
82532241 GTAATTCTGTAAATCGAGGGTAAGACGGTAATTCTATAAATCAAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAATG
*
82532295 GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAATG
82532349 GTAATT
1 GTAATT
82532355 CTATCTTATT
Statistics
Matches: 105, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 105 1.00
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.30
Consensus pattern (54 bp):
GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAATG
Found at i:82532217 original size:27 final size:27
Alignment explanation
Indices: 82532187--82532358 Score: 245
Period size: 27 Copynumber: 6.4 Consensus size: 27
82532177 GGGTATTTCA
* *
82532187 GTAATTTTGTAAATCAAGGGTAAAATG
1 GTAATTCTATAAATCAAGGGTAAAATG
* *
82532214 GTAATTCTATAAATCGAGAGTAAAATG
1 GTAATTCTATAAATCAAGGGTAAAATG
* * * *
82532241 GTAATTCTGTAAATCGAGGGTAAGACG
1 GTAATTCTATAAATCAAGGGTAAAATG
82532268 GTAATTCTATAAATCAAGGGTAAAATG
1 GTAATTCTATAAATCAAGGGTAAAATG
* * *
82532295 GTAATTTTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCAAGGGTAAAATG
82532322 GTAATTCTATAAATCAAGGGTAAAATG
1 GTAATTCTATAAATCAAGGGTAAAATG
82532349 GTAATTCTAT
1 GTAATTCTAT
82532359 CTTATTTCGG
Statistics
Matches: 127, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 127 1.00
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.31
Consensus pattern (27 bp):
GTAATTCTATAAATCAAGGGTAAAATG
Found at i:82532252 original size:81 final size:81
Alignment explanation
Indices: 82532158--82532358 Score: 258
Period size: 81 Copynumber: 2.5 Consensus size: 81
82532148 AGGGGTATTT
* * *** * *
82532158 TGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTGTAAATCAAGGGTAAAATGGTAATTCTA
1 TGGTAATTCTGTAAATCAAGGGTAAGACAGTAATTCTATAAATCAAGGGTAAAATGGTAATTCTA
82532223 TAAATCGAGAGTAAAA
66 TAAATCGAGAGTAAAA
* * *
82532239 TGGTAATTCTGTAAATCGAGGGTAAGACGGTAATTCTATAAATCAAGGGTAAAATGGTAATTTTA
1 TGGTAATTCTGTAAATCAAGGGTAAGACAGTAATTCTATAAATCAAGGGTAAAATGGTAATTCTA
*
82532304 TAAATCGAGGGTAAAA
66 TAAATCGAGAGTAAAA
* * * **
82532320 CGGTAATTCTATAAATCAAGGGTAAAATGGTAATTCTAT
1 TGGTAATTCTGTAAATCAAGGGTAAGACAGTAATTCTAT
82532359 CTTATTTCGG
Statistics
Matches: 104, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 104 1.00
ACGTcount: A:0.39, C:0.08, G:0.21, T:0.32
Consensus pattern (81 bp):
TGGTAATTCTGTAAATCAAGGGTAAGACAGTAATTCTATAAATCAAGGGTAAAATGGTAATTCTA
TAAATCGAGAGTAAAA
Found at i:82532391 original size:27 final size:27
Alignment explanation
Indices: 82532361--82532455 Score: 120
Period size: 27 Copynumber: 3.5 Consensus size: 27
82532351 AATTCTATCT
*
82532361 TATTTCGGTAATTTTACAAATCGAGGA
1 TATTTCGGTAATTTTACAAATCGAGGG
* * *
82532388 TATTTGGGTAATTTTATAAATCGGGGG
1 TATTTCGGTAATTTTACAAATCGAGGG
*
82532415 TACTTT-GGTAATTTTACAAGTCGAGGG
1 TA-TTTCGGTAATTTTACAAATCGAGGG
*
82532442 TATTTCAGTAATTT
1 TATTTCGGTAATTT
82532456 GGTAAACTAA
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 3 0.05
27 52 0.90
28 3 0.05
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.41
Consensus pattern (27 bp):
TATTTCGGTAATTTTACAAATCGAGGG
Found at i:82534738 original size:12 final size:13
Alignment explanation
Indices: 82534721--82534758 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
82534711 ATCTTAGAAT
82534721 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
82534733 ATTAAGAACACATA
1 ATTAAGAACA-AGA
82534747 ATTAAGAACAAG
1 ATTAAGAACAAG
82534759 TCAAATATTC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:82542431 original size:30 final size:30
Alignment explanation
Indices: 82542395--82542456 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
82542385 AATCAGAAGT
82542395 TTTGGCACTAACTGTGTGATTTAAACTAGC
1 TTTGGCACTAACTGTGTGATTTAAACTAGC
*
82542425 TTTGGCACTAAGTGTGTGATTTAAACTAGC
1 TTTGGCACTAACTGTGTGATTTAAACTAGC
82542455 TT
1 TT
82542457 CGACTACTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.39
Consensus pattern (30 bp):
TTTGGCACTAACTGTGTGATTTAAACTAGC
Found at i:82545174 original size:48 final size:48
Alignment explanation
Indices: 82545093--82545188 Score: 129
Period size: 48 Copynumber: 2.0 Consensus size: 48
82545083 CCGGAATGCC
* * *
82545093 GGTCACATGGTGATGGCAGCCACACTAGAGTGCGAGCGCACGTGTGGG
1 GGTCACACGGTGATGGCAGCCACACGAGAGTGCGAGCGCACATGTGGG
* * * *
82545141 GGTCACACGGTGATGGTAGCCATACGAGCGTGCGAGCGTACATGTGGG
1 GGTCACACGGTGATGGCAGCCACACGAGAGTGCGAGCGCACATGTGGG
82545189 AGCTTTGACG
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.21, C:0.22, G:0.40, T:0.18
Consensus pattern (48 bp):
GGTCACACGGTGATGGCAGCCACACGAGAGTGCGAGCGCACATGTGGG
Found at i:82545433 original size:26 final size:27
Alignment explanation
Indices: 82545395--82545464 Score: 106
Period size: 26 Copynumber: 2.6 Consensus size: 27
82545385 TGTAGGGTAG
*
82545395 AATTACTGAAATACCCTTGGTTTACAA
1 AATTACTGAAATACCCTTGGTTCACAA
82545422 AATTACTG-AATACCCTTGGTTCACAA
1 AATTACTGAAATACCCTTGGTTCACAA
**
82545448 AATTACCAAAATACCCT
1 AATTACTGAAATACCCT
82545465 CGATTAGCAA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
26 23 0.59
27 16 0.41
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.30
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGGTTCACAA
Found at i:82545779 original size:27 final size:27
Alignment explanation
Indices: 82545395--82545769 Score: 222
Period size: 27 Copynumber: 13.9 Consensus size: 27
82545385 TGTAGGGTAG
* *
82545395 AATTACTGAAATACCCTTGGTTTACAA
1 AATTACCGAAATACCCTTGGTTTGCAA
* **
82545422 AATTACTG-AATACCCTTGGTTCACAA
1 AATTACCGAAATACCCTTGGTTTGCAA
* * * *
82545448 AATTACCAAAATACCCTCGATTAGCAA
1 AATTACCGAAATACCCTTGGTTTGCAA
* *
82545475 AATTACC-AAA-ACACCTCTAGTTTGGAA
1 AATTACCGAAATAC-CCT-TGGTTTGCAA
* * * **
82545502 AATTACCAAAAGACCCCTGGTTTGTGA
1 AATTACCGAAATACCCTTGGTTTGCAA
* **** *
82545529 AATTACCGAAATACCATCAACTTGTAA
1 AATTACCGAAATACCCTTGGTTTGCAA
** * ** *
82545556 AATTATTGAAATACCCTCGACTTGTAA
1 AATTACCGAAATACCCTTGGTTTGCAA
* * *
82545583 AATTATCGAAATACCCTTGATTTGTAA
1 AATTACCGAAATACCCTTGGTTTGCAA
* * **
82545610 AATTACCAAAATACCCCTAATTTAG-AA
1 AATTACCGAAATACCCTTGGTTT-GCAA
* *
82545637 AATTACCGAAATACCCTTGATTTGGAA
1 AATTACCGAAATACCCTTGGTTTGCAA
* * ** *
82545664 AATTA-TGAAAATACCCCTAATTTACAA
1 AATTACCG-AAATACCCTTGGTTTGCAA
** *
82545691 AATTACAAAAATACCCTTGACTTT-CAAA
1 AATTACCGAAATACCCTTG-GTTTGC-AA
** *
82545719 AATTATAGAAATACCATTGGTTTGCAA
1 AATTACCGAAATACCCTTGGTTTGCAA
82545746 AATTACCGAAATACCCTTGGTTTG
1 AATTACCGAAATACCCTTGGTTTG
82545770 TAGATTTACC
Statistics
Matches: 280, Mismatches: 56, Indels: 24
0.78 0.16 0.07
Matches are distributed among these distances:
25 2 0.01
26 31 0.11
27 217 0.77
28 28 0.10
29 2 0.01
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGGTTTGCAA
Found at i:82546293 original size:22 final size:22
Alignment explanation
Indices: 82546252--82546316 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
82546242 GCCAATTATT
* * *
82546252 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGATCTGTGCCAAC
82546274 CT-ACTTATGGATCTGTGCCAAC
1 CTGA-TTATGGATCTGTGCCAAC
* *
82546296 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGATCTGTGCCAA
82546317 ACGCGTTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (22 bp):
CTGATTATGGATCTGTGCCAAC
Found at i:82546545 original size:22 final size:22
Alignment explanation
Indices: 82546520--82546563 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
82546510 TTGCTGCGAG
*
82546520 GTTTACGGCTATGTGCTGTCCT
1 GTTTACGGCTATGTGATGTCCT
*
82546542 GTTTATGGCTATGTGATGTCCT
1 GTTTACGGCTATGTGATGTCCT
82546564 ATCTACGCCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.11, C:0.18, G:0.27, T:0.43
Consensus pattern (22 bp):
GTTTACGGCTATGTGATGTCCT
Found at i:82546751 original size:27 final size:27
Alignment explanation
Indices: 82546721--82546826 Score: 72
Period size: 27 Copynumber: 3.7 Consensus size: 27
82546711 GCAACTGATA
*
82546721 CTGATTCT-ATATTGGGCTTAGGCCCAC
1 CTGATTCTGATAATGGGC-TAGGCCCAC
*
82546748 CTGATTCTGTTAATGGGCTAGGCCCAAC
1 CTGATTCTGATAATGGGCTAGGCCC-AC
* * *
82546776 TGTTACTGATTCTGAGAATGGCCTAGGCCCAA
1 -----CTGATTCTGATAATGGGCTAGGCCCAC
* *
82546808 TTGATTCTGATGA-GGGCTA
1 CTGATTCTGATAATGGGCTA
82546827 AGACCCAAGT
Statistics
Matches: 62, Mismatches: 10, Indels: 15
0.71 0.11 0.17
Matches are distributed among these distances:
26 5 0.08
27 25 0.40
28 9 0.15
32 1 0.02
33 22 0.35
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (27 bp):
CTGATTCTGATAATGGGCTAGGCCCAC
Found at i:82546834 original size:60 final size:60
Alignment explanation
Indices: 82546712--82546834 Score: 133
Period size: 60 Copynumber: 2.0 Consensus size: 60
82546702 TGCATATCTG
* * * * * *
82546712 CAACTGATACTGATTCTATATTGGGCTTAGGCCCACCTGATTCTGTTAATGGGCTAGGCC
1 CAACTGATACTGATTCTAGAATGGGCCTAGGCCCAACTGATTCTGATAATGGGCTAGACC
* * *
82546772 CAACTGTTACTGATTCTGAGAAT-GGCCTAGGCCCAATTGATTCTGATGA-GGGCTAAGACC
1 CAACTGATACTGATTCT-AGAATGGGCCTAGGCCCAACTGATTCTGATAATGGGCT-AGACC
82546832 CAA
1 CAA
82546835 GTGAAATTGT
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
59 5 0.10
60 44 0.85
61 3 0.06
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (60 bp):
CAACTGATACTGATTCTAGAATGGGCCTAGGCCCAACTGATTCTGATAATGGGCTAGACC
Found at i:82549348 original size:17 final size:18
Alignment explanation
Indices: 82549316--82549351 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
82549306 ATGGCCCGGG
*
82549316 ATGGGCCATGTGGGCCCA
1 ATGGGCCATATGGGCCCA
82549334 ATGGGCC-TATGGGCCCA
1 ATGGGCCATATGGGCCCA
82549351 A
1 A
82549352 GTGGATAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.19, C:0.28, G:0.36, T:0.17
Consensus pattern (18 bp):
ATGGGCCATATGGGCCCA
Found at i:82549441 original size:27 final size:26
Alignment explanation
Indices: 82549411--82549491 Score: 90
Period size: 27 Copynumber: 3.0 Consensus size: 26
82549401 ATCTCATATT
* *
82549411 TGTAGGCTAGTATTACTGAAATAACCC
1 TGTAGGATAGAATTACTGAAAT-ACCC
* * *
82549438 TGTAGAATAGAATTACTGAAATGCCTT
1 TGTAGGATAGAATTACTGAAATACC-C
*
82549465 TGTAGGGTAGAATTACTGAAATACCC
1 TGTAGGATAGAATTACTGAAATACCC
82549491 T
1 T
82549492 TGGTTTATAA
Statistics
Matches: 44, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
26 3 0.07
27 41 0.93
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.31
Consensus pattern (26 bp):
TGTAGGATAGAATTACTGAAATACCC
Found at i:82549505 original size:27 final size:27
Alignment explanation
Indices: 82549475--82549870 Score: 252
Period size: 27 Copynumber: 14.7 Consensus size: 27
82549465 TGTAGGGTAG
* * *
82549475 AATTACTGAAATACCCTTGGTTTATAA
1 AATTACTAAAATACCCTTGATTTGTAA
* * * *
82549502 AATTACCAAAATACCCTCGATTAGCAA
1 AATTACTAAAATACCCTTGATTTGTAA
* * *
82549529 AATTGCCAAAATACCCCT-AGTTTGTAA
1 AATTACTAAAATACCCTTGA-TTTGTAA
* * * *
82549556 AATTACCAAAATACCC-TGGTTTTTTA
1 AATTACTAAAATACCCTTGATTTGTAA
* *
82549582 AATTACCAAAATACCCTTGATTTGTGA
1 AATTACTAAAATACCCTTGATTTGTAA
* **
82549609 AATTA-TCAAAATACCCTCGACCTGTAA
1 AATTACT-AAAATACCCTTGATTTGTAA
* * * * *
82549636 AATTACCAAAATACCATCGACTTATAA
1 AATTACTAAAATACCCTTGATTTGTAA
*
82549663 AATTACTGAAATACCCTTGATTTGTAA
1 AATTACTAAAATACCCTTGATTTGTAA
* * *
82549690 AATTACCAAAATACCCCTGATTTGGAA
1 AATTACTAAAATACCCTTGATTTGTAA
* * *
82549717 AATTA-TCGAAATACCTTTGATTTGGAA
1 AATTACT-AAAATACCCTTGATTTGTAA
* * * **
82549744 AAATAC-AGAAATACCCCTAATTTACAA
1 AATTACTA-AAATACCCTTGATTTGTAA
82549771 AATTA-TAGAAATACCCTTGACTTT-TAAA
1 AATTACTA-AAATACCCTTGA-TTTGT-AA
* * *
82549799 AATTA-TAGAAATACCATTGGTTTGCAA
1 AATTACTA-AAATACCCTTGATTTGTAA
** *
82549826 AATTA-TCGAATACCCTTGATTTGTAG
1 AATTACTAAAATACCCTTGATTTGTAA
* * *
82549852 ATTTACCAAAACACCCTTG
1 AATTACTAAAATACCCTTG
82549871 TAGGGTGAAA
Statistics
Matches: 289, Mismatches: 67, Indels: 26
0.76 0.18 0.07
Matches are distributed among these distances:
26 41 0.14
27 225 0.78
28 23 0.08
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (27 bp):
AATTACTAAAATACCCTTGATTTGTAA
Found at i:82549622 original size:107 final size:108
Alignment explanation
Indices: 82549483--82549731 Score: 281
Period size: 107 Copynumber: 2.3 Consensus size: 108
82549473 AGAATTACTG
* * * * * * *
82549483 AAATACCCTTGGTTTATAAAATTACCAAAATACCCTCGA-TTAGCAAAATTGCCAAAATACCCCT
1 AAATACCCTTGATTTGTGAAATTATCAAAATACCCTCGACCT-GCAAAATTACCAAAATA-CCAT
* * * * *
82549547 AG-TTTGTAAAATTACCAAAATACCC-TGGTTTTTTAAATTACCA
64 AGACTTATAAAATTACCAAAATACCCTTGATTTGTAAAATTACCA
* *
82549590 AAATACCCTTGATTTGTGAAATTATCAAAATACCCTCGACCTGTAAAATTACCAAAATACCATCG
1 AAATACCCTTGATTTGTGAAATTATCAAAATACCCTCGACCTGCAAAATTACCAAAATACCATAG
**
82549655 ACTTATAAAATTACTGAAATACCCTTGATTTGTAAAATTACCA
66 ACTTATAAAATTACCAAAATACCCTTGATTTGTAAAATTACCA
* *
82549698 AAATACCCCTGATTTG-GAAAATTATCGAAATACC
1 AAATACCCTTGATTTGTG-AAATTATCAAAATACC
82549732 TTTGATTTGG
Statistics
Matches: 120, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
106 4 0.03
107 70 0.58
108 46 0.38
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (108 bp):
AAATACCCTTGATTTGTGAAATTATCAAAATACCCTCGACCTGCAAAATTACCAAAATACCATAG
ACTTATAAAATTACCAAAATACCCTTGATTTGTAAAATTACCA
Found at i:82549755 original size:81 final size:83
Alignment explanation
Indices: 82549483--82549867 Score: 294
Period size: 81 Copynumber: 4.8 Consensus size: 83
82549473 AGAATTACTG
* * * * * * *
82549483 AAATACCCTTGGTTTATAAAATTACCA-AAATACCCTCGATTAGCAAAATTGCCAAAATACCCCT
1 AAATACCATTGATTTGTAAAATTACCAGAAATACCCTTGATTTGTAAAATTACCAAAATACCCCT
*
82549547 -AGTTTGTAAAATTACCA
66 GACTTTGTAAAATTACCA
* * * * * *
82549564 AAATACC-CTGGTTTTTTAAATTACCA-AAATACCCTTGATTTGTGAAATTATCAAAATA-CCCT
1 AAATACCATTGATTTGTAAAATTACCAGAAATACCCTTGATTTGTAAAATTACCAAAATACCCCT
*
82549626 CGAC-CTGTAAAATTACCA
66 -GACTTTGTAAAATTACCA
* * * *
82549644 AAATACCATCGACTTATAAAATTA-CTGAAATACCCTTGATTTGTAAAATTACCAAAATACCCCT
1 AAATACCATTGATTTGTAAAATTACCAGAAATACCCTTGATTTGTAAAATTACCAAAATACCCCT
* * *
82549708 GA-TTTGGAAAATTATCG
66 GACTTTGTAAAATTACCA
* * * * * ** * *
82549725 AAATACCTTTGATTTGGAAAAATA-CAGAAATACCCCTAATTTACAAAATTA-TAGAAATACCCT
1 AAATACCATTGATTTGTAAAATTACCAGAAATACCCTTGATTTGTAAAATTACCA-AAATACCCC
*
82549788 TGACTTT-TAAAAATTA-TA
65 TGACTTTGT-AAAATTACCA
* * * * * *
82549806 GAAATACCATTGGTTTGCAAAATTATC-G-AATACCCTTGATTTGTAGATTTACCAAAACACCC
1 -AAATACCATTGATTTGTAAAATTACCAGAAATACCCTTGATTTGTAAAATTACCAAAATACCC
82549868 TTGTAGGGTG
Statistics
Matches: 240, Mismatches: 52, Indels: 24
0.76 0.16 0.08
Matches are distributed among these distances:
79 4 0.02
80 64 0.27
81 135 0.56
82 36 0.15
83 1 0.00
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.31
Consensus pattern (83 bp):
AAATACCATTGATTTGTAAAATTACCAGAAATACCCTTGATTTGTAAAATTACCAAAATACCCCT
GACTTTGTAAAATTACCA
Found at i:82550542 original size:22 final size:22
Alignment explanation
Indices: 82550512--82550563 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
82550502 TGCTGCGATG
82550512 TTTACGGCTATATGCCGTCCTA
1 TTTACGGCTATATGCCGTCCTA
* * * *
82550534 TTTATGGCTATGTGCTGTCCTC
1 TTTACGGCTATATGCCGTCCTA
*
82550556 TATACGGC
1 TTTACGGC
82550564 GTTGAGCCAT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.15, C:0.25, G:0.21, T:0.38
Consensus pattern (22 bp):
TTTACGGCTATATGCCGTCCTA
Found at i:82554671 original size:47 final size:45
Alignment explanation
Indices: 82554561--82554729 Score: 151
Period size: 48 Copynumber: 3.6 Consensus size: 45
82554551 ATAGATGTGT
* ** *
82554561 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCATATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-CATAAGACGAGA
* *
82554607 GCCAGTGTAAGACCATGTATGGGACATGGCATCGGCATTAAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA-TAAGACGAGA
* * * * *
82554655 TCTAGTGTAAGACATGTCTGGGACATTCATCGGCCTCGAAATATGCA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCAT---AAGACG-AGA
*
82554703 GCTAGTGTAAGACCTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
82554730 GCACCGGCTT
Statistics
Matches: 100, Mismatches: 16, Indels: 12
0.78 0.12 0.09
Matches are distributed among these distances:
45 1 0.01
46 18 0.18
47 28 0.28
48 52 0.52
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.25
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATAAGACGAGA
Found at i:82554806 original size:93 final size:92
Alignment explanation
Indices: 82554612--82554878 Score: 250
Period size: 93 Copynumber: 2.8 Consensus size: 92
82554602 TGAGAGCCAG
* * * *
82554612 TGTAAGACCATGTATGGGACATGGCATCGGCATTAAGACGAGATCTAGTGTAAGACATGTCTGGG
1 TGTAAGACC-TGTATGGGACATGGCATCGGC-TT-AGATGTG-TC-AGTGTAAGACCTGTTTGGG
* * * *
82554677 ACAT-TCATCGGCCTCGAAATATGCAAGCTAG
61 ACATGGCATCAGCCTCGAAATATGAAAGCTAA
* * *
82554708 TGTAAGACCTGTCTGGGACATGGCACCGGCTTGACATGTGTCAGTGTAAGACCTGTTTGGGACAT
1 TGTAAGACCTGTATGGGACATGGCATCGGCTT-AGATGTGTCAGTGTAAGACCTGTTTGGGACAT
*
82554773 GGCATCAGCCTCGATATATGAAAG-TCAA
65 GGCATCAGCCTCGAAATATGAAAGCT-AA
* * * * * *
82554801 TGTAAGACCTGTTTGGGATATGGTATTGACTTAGATGTGTGAGCCAGTGTAAGACCATGTTTGGA
1 TGTAAGACCTGTATGGGACATGGCATCGGCTTAGATGTGT----CAGTGTAAGACC-TGTTTGGG
82554866 ACATGGCATCAGC
61 ACATGGCATCAGC
82554879 ATCGTACCCT
Statistics
Matches: 143, Mismatches: 21, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
92 29 0.20
93 48 0.34
94 6 0.04
95 19 0.13
96 21 0.15
97 20 0.14
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (92 bp):
TGTAAGACCTGTATGGGACATGGCATCGGCTTAGATGTGTCAGTGTAAGACCTGTTTGGGACATG
GCATCAGCCTCGAAATATGAAAGCTAA
Found at i:82567262 original size:37 final size:37
Alignment explanation
Indices: 82567208--82567282 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
82567198 TGAGGGGTGG
*
82567208 CTAAGATTTTGGAGAAGAATCTGTGTTTTGAAGGATA
1 CTAAGATTTTGGAGAAGAATCTGTGTTTCGAAGGATA
*
82567245 CTAAGATTTTGGGGAAGAATCTGTGTTTCGAAGGATA
1 CTAAGATTTTGGAGAAGAATCTGTGTTTCGAAGGATA
82567282 C
1 C
82567283 CGAGTTGATC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.33
Consensus pattern (37 bp):
CTAAGATTTTGGAGAAGAATCTGTGTTTCGAAGGATA
Found at i:82571852 original size:37 final size:37
Alignment explanation
Indices: 82571802--82571881 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
82571792 CTTATTACGA
* *
82571802 AGTCTTACCCGGACATAA-TCTCCACACGAAGTTATCG
1 AGTCTTACCCGGACAAAATTC-CCACACGAAGTCATCG
*
82571839 AGTCTTACCCGGACAAAATTCCCACACGCAGTCATCG
1 AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
*
82571876 GGTCTT
1 AGTCTT
82571882 TAGAGCCCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (37 bp):
AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
Found at i:82572071 original size:47 final size:47
Alignment explanation
Indices: 82572012--82572309 Score: 422
Period size: 47 Copynumber: 6.4 Consensus size: 47
82572002 TATCACATTT
* * *
82572012 ATACAC-T-TTCACATTCATCACATCGGCCATTAGGCCTTATCTCAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
82572057 ATACACATGCTCACATTCATCACATTGGCCACTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
82572104 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* * * *
82572151 ATATACATGTTGACTTTCATCACATTGGCCATTCGGTCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
82572198 ATACACACGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* * *
82572245 ATACACCTATTCACATTCATCACATTGGCCATTCGGCCCTATTCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTA-TCACAC
*
82572293 ATATACACT-TTCACATT
1 ATACACA-TGTTCACATT
82572310 TATTCAATTA
Statistics
Matches: 227, Mismatches: 22, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
45 6 0.03
46 1 0.00
47 200 0.88
48 19 0.08
49 1 0.00
ACGTcount: A:0.27, C:0.32, G:0.10, T:0.31
Consensus pattern (47 bp):
ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
Found at i:82576207 original size:40 final size:40
Alignment explanation
Indices: 82576150--82576360 Score: 284
Period size: 40 Copynumber: 5.6 Consensus size: 40
82576140 CCAGCATGAT
* * *
82576150 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
82576190 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
82576230 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
82576270 TGCTCTTCGGGACTTAGCCCGGAT--AT-A-T----C--A
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
82576300 --CTATTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
82576338 TGCTCTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
82576361 CATCATTCGA
Statistics
Matches: 150, Mismatches: 9, Indels: 24
0.82 0.05 0.13
Matches are distributed among these distances:
28 21 0.14
30 3 0.02
31 1 0.01
32 1 0.01
36 2 0.01
37 1 0.01
38 3 0.02
40 118 0.79
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:82576241 original size:80 final size:80
Alignment explanation
Indices: 82576150--82576360 Score: 266
Period size: 68 Copynumber: 2.8 Consensus size: 80
82576140 CCAGCATGAT
* *
82576150 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCACGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
82576215 CATCACTAGCACGAA
66 CATCACTAGCACGAA
* * *
82576230 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT-
1 TGCTCTTCGGGACTTAGCACGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
82576294 -AT-A-T----C--A
66 CATCACTAGCACGAA
* * *
82576300 --CTATTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCACGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGA
82576361 CATCATTCGA
Statistics
Matches: 124, Mismatches: 7, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
68 59 0.48
70 1 0.01
72 1 0.01
76 1 0.01
77 1 0.01
78 2 0.02
80 59 0.48
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
TGCTCTTCGGGACTTAGCACGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
CATCACTAGCACGAA
Found at i:82576315 original size:28 final size:28
Alignment explanation
Indices: 82576275--82576330 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
82576265 ATGAATGCTC
*
82576275 TTCGGGACTTAGCCCGGATATATCACTA
1 TTCGGGACTTAGCCCGGATACATCACTA
82576303 TTCGGGACTTAGCCCGGATACATCACTA
1 TTCGGGACTTAGCCCGGATACATCACTA
82576331 GCACGAATGC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (28 bp):
TTCGGGACTTAGCCCGGATACATCACTA
Found at i:82578087 original size:37 final size:37
Alignment explanation
Indices: 82578037--82578116 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
82578027 CTTATTACGA
* *
82578037 AGTCTTACCCGGACATAA-TCTCCACACGAAGTTATCG
1 AGTCTTACCCGGACAAAATTC-CCACACGAAGTCATCG
*
82578074 AGTCTTACCCGGACAAAATTCCCACACGCAGTCATCG
1 AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
*
82578111 GGTCTT
1 AGTCTT
82578117 TAGAGCCCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (37 bp):
AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
Found at i:82578306 original size:47 final size:47
Alignment explanation
Indices: 82578247--82578450 Score: 279
Period size: 47 Copynumber: 4.4 Consensus size: 47
82578237 TATCACATTT
* * *
82578247 ATACAC-T-TTCACATTCATCACATCGGCCATTAGGCCTTATCTCAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
82578292 ATACACATGCTCACATTCATCACATTGGCCACTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
*
82578339 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* * *
82578386 ATATACATGTTCACTTTCATCACATTGGCCATTCGGCCCTATTCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTA-TCACAC
*
82578434 ATATACACT-TTCACATT
1 ATACACA-TGTTCACATT
82578451 TATTCAATTA
Statistics
Matches: 144, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
45 6 0.04
46 1 0.01
47 116 0.81
48 20 0.14
49 1 0.01
ACGTcount: A:0.27, C:0.32, G:0.09, T:0.31
Consensus pattern (47 bp):
ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
Found at i:82582899 original size:17 final size:17
Alignment explanation
Indices: 82582877--82582914 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
82582867 TTCAACTATT
82582877 TTAGACTTCCCTCGATC
1 TTAGACTTCCCTCGATC
82582894 TTAGACTTCCCTCGATC
1 TTAGACTTCCCTCGATC
82582911 TTAG
1 TTAG
82582915 TCTAATTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.18, C:0.32, G:0.13, T:0.37
Consensus pattern (17 bp):
TTAGACTTCCCTCGATC
Found at i:82593945 original size:37 final size:37
Alignment explanation
Indices: 82593895--82594089 Score: 390
Period size: 37 Copynumber: 5.3 Consensus size: 37
82593885 NNNNNNNNNN
82593895 ATCGGGTCTTACCCGGACATACTCTCCACACGTAGTC
1 ATCGGGTCTTACCCGGACATACTCTCCACACGTAGTC
82593932 ATCGGGTCTTACCCGGACATACTCTCCACACGTAGTC
1 ATCGGGTCTTACCCGGACATACTCTCCACACGTAGTC
82593969 ATCGGGTCTTACCCGGACATACTCTCCACACGTAGTC
1 ATCGGGTCTTACCCGGACATACTCTCCACACGTAGTC
82594006 ATCGGGTCTTACCCGGACATACTCTCCACACGTAGTC
1 ATCGGGTCTTACCCGGACATACTCTCCACACGTAGTC
82594043 ATCGGGTCTTACCCGGACATACTCTCCACACGTAGTC
1 ATCGGGTCTTACCCGGACATACTCTCCACACGTAGTC
82594080 ATCGGGTCTT
1 ATCGGGTCTT
82594090 TAGAGCTCGG
Statistics
Matches: 158, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 158 1.00
ACGTcount: A:0.21, C:0.34, G:0.19, T:0.25
Consensus pattern (37 bp):
ATCGGGTCTTACCCGGACATACTCTCCACACGTAGTC
Found at i:82594333 original size:49 final size:49
Alignment explanation
Indices: 82594208--82594681 Score: 803
Period size: 49 Copynumber: 9.8 Consensus size: 49
82594198 CCCTTCGGGA
* * * * *
82594208 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82594255 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82594302 CTTATCACATATATATACACTTTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82594351 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82594400 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82594449 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82594498 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
82594547 CTTATCACATATATATACACTTTCACATTTATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82594596 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82594645 CTTATCACATATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATATACACTTTCACATTCATCACAT
82594682 AGAATCCTAA
Statistics
Matches: 402, Mismatches: 21, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 43 0.11
49 358 0.89
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:82596250 original size:56 final size:57
Alignment explanation
Indices: 82596183--82596303 Score: 217
Period size: 57 Copynumber: 2.1 Consensus size: 57
82596173 TATTAATTTA
*
82596183 TTGCCCATGCTTCTTATTTTA-TTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTCTTCCATTAACACAACATGTTGCATGACATGTT
*
82596239 TTGCCCATGCTTCTTATTTTATTTTTTCCATTAACACAACATGTTGCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTCTTCCATTAACACAACATGTTGCATGACATGTT
82596296 TTGCCCAT
1 TTGCCCAT
82596304 CATCCCTTGT
Statistics
Matches: 62, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
56 21 0.34
57 41 0.66
ACGTcount: A:0.22, C:0.23, G:0.10, T:0.45
Consensus pattern (57 bp):
TTGCCCATGCTTCTTATTTTATTTCTTCCATTAACACAACATGTTGCATGACATGTT
Found at i:82597616 original size:40 final size:39
Alignment explanation
Indices: 82597584--82597767 Score: 233
Period size: 40 Copynumber: 4.6 Consensus size: 39
82597574 CCAGCATGAT
* * *
82597584 TGCTCTTCAGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTC-GGACTTAGCCCGGATATATCACTAGCACGAA
** *
82597624 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTC-GGACTTAGCCCGGATATATCACTAGCACGAA
* *
82597664 TGCTCTTCGGAACTTAGCCCGAATATATCACTAGCACAAA
1 TGCTCTTCGG-ACTTAGCCCGGATATATCACTAGCACGAA
* *
82597704 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGG-ACTTAGCCCGGATATATCACTAGCACGAA
82597744 TGCTCTTCGGGACTTAGCCCGGAT
1 TGCTCTTC-GGACTTAGCCCGGAT
82597768 CATCGTCGAG
Statistics
Matches: 126, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
TGCTCTTCGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:82599822 original size:49 final size:49
Alignment explanation
Indices: 82599755--82600018 Score: 474
Period size: 49 Copynumber: 5.4 Consensus size: 49
82599745 NNNNTATCAC
82599755 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
* * *
82599804 ATATATACACTTTTACATTCATCACATTGGCCATTCGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
* *
82599853 ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
82599902 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
82599951 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
*
82600000 ATATTTACACTTTCACATT
1 ATATATACACTTTCACATT
82600019 TATTCAAATA
Statistics
Matches: 208, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 208 1.00
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.35
Consensus pattern (49 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
Found at i:82601542 original size:56 final size:57
Alignment explanation
Indices: 82601475--82601595 Score: 226
Period size: 57 Copynumber: 2.1 Consensus size: 57
82601465 TATTAGTTTA
82601475 TTGCCCATGCTTCTTATTTTA-TTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTCTTCCATTAACACAACATGTTTCATGACATGTT
*
82601531 TTGCCCATGCTTCTTATTTTATTTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTCTTCCATTAACACAACATGTTTCATGACATGTT
82601588 TTGCCCAT
1 TTGCCCAT
82601596 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
56 21 0.33
57 42 0.67
ACGTcount: A:0.22, C:0.23, G:0.09, T:0.45
Consensus pattern (57 bp):
TTGCCCATGCTTCTTATTTTATTTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:82603356 original size:15 final size:16
Alignment explanation
Indices: 82603325--82603357 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
82603315 CATTTGGGCC
*
82603325 CTCACGAGCGTGTGAA
1 CTCACGAGCGGGTGAA
82603341 CTCACGAG-GGGTGAA
1 CTCACGAGCGGGTGAA
82603356 CT
1 CT
82603358 GAGCCCACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.24, C:0.24, G:0.33, T:0.18
Consensus pattern (16 bp):
CTCACGAGCGGGTGAA
Found at i:82604105 original size:95 final size:95
Alignment explanation
Indices: 82603932--82604142 Score: 260
Period size: 95 Copynumber: 2.2 Consensus size: 95
82603922 GGAGGAAGCG
* * ** * * *
82603932 TACGACCTGTAGCCATCTTGTATAAGGCTTTCAGCCTTCCTATGATACTTATGGCTTACAGTCGT
1 TACGGCCTGTAGCCATCCTGTATAAGGCTTTCAGCCTTCCTACAATACTTATGGATTACAGCCAT
* *
82603997 TCTGTTAATTGGCAGCGCTGCTGCGATATT
66 TCTGTTAACTGGCAGCGCTACTGCGATATT
* * * * **
82604027 TACGGCCTGTAGTCGTCCTGTATAAGGCTTTCAGCCTTTCTGCAATACTTATGGATTATTGCCAT
1 TACGGCCTGTAGCCATCCTGTATAAGGCTTTCAGCCTTCCTACAATACTTATGGATTACAGCCAT
* *
82604092 TCTGTTAACTGGCAGTGTTACTGCGATATT
66 TCTGTTAACTGGCAGCGCTACTGCGATATT
*
82604122 TACGGCCTTTAGCCATCCTGT
1 TACGGCCTGTAGCCATCCTGT
82604143 CTACAGCGTT
Statistics
Matches: 96, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
95 96 1.00
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.36
Consensus pattern (95 bp):
TACGGCCTGTAGCCATCCTGTATAAGGCTTTCAGCCTTCCTACAATACTTATGGATTACAGCCAT
TCTGTTAACTGGCAGCGCTACTGCGATATT
Found at i:82604160 original size:22 final size:22
Alignment explanation
Indices: 82604132--82604206 Score: 107
Period size: 22 Copynumber: 3.4 Consensus size: 22
82604122 TACGGCCTTT
82604132 AGCCATCCTGTCTACAGCGTTG
1 AGCCATCCTGTCTACAGCGTTG
* *
82604154 AGCCATCCTATCTAC-GACATTG
1 AGCCATCCTGTCTACAG-CGTTG
82604176 AGCCATCCTGTCTACAGCGTTG
1 AGCCATCCTGTCTACAGCGTTG
*
82604198 AGCCGTCCT
1 AGCCATCCT
82604207 TTGACTCAGT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
21 1 0.02
22 44 0.96
23 1 0.02
ACGTcount: A:0.20, C:0.33, G:0.20, T:0.27
Consensus pattern (22 bp):
AGCCATCCTGTCTACAGCGTTG
Found at i:82607547 original size:95 final size:95
Alignment explanation
Indices: 82607392--82607571 Score: 270
Period size: 95 Copynumber: 1.9 Consensus size: 95
82607382 GACCTGTAAC
* ** * *
82607392 CGTCCTGTATAAGGCTTTTAGCCTTTCTGTGATACTTATGGCTTATAGTTGTTCTGTTAATTGGC
1 CGTCCTGTATAAGGCTTTCAGCCTTTCTACGATACTTACGGCTTATAGCTGTTCTGTTAATTGGC
82607457 AGCGCTGCTACGATATTTACAGCCTGTAGT
66 AGCGCTGCTACGATATTTACAGCCTGTAGT
* *
82607487 CGTCCTGTATAAGGCTTTCATCCTTTTTACGATACTTACGGCTTATAGCTGTTCTGTTAATTGGC
1 CGTCCTGTATAAGGCTTTCAGCCTTTCTACGATACTTACGGCTTATAGCTGTTCTGTTAATTGGC
* * *
82607552 AGTGTTGCTGCGATATTTAC
66 AGCGCTGCTACGATATTTAC
82607572 GGCATTGAGC
Statistics
Matches: 75, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
95 75 1.00
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.41
Consensus pattern (95 bp):
CGTCCTGTATAAGGCTTTCAGCCTTTCTACGATACTTACGGCTTATAGCTGTTCTGTTAATTGGC
AGCGCTGCTACGATATTTACAGCCTGTAGT
Found at i:82610718 original size:14 final size:14
Alignment explanation
Indices: 82610699--82610751 Score: 90
Period size: 14 Copynumber: 3.8 Consensus size: 14
82610689 TTGTTTCACT
82610699 GAAAATGACTTTC-G
1 GAAAATGA-TTTCTG
82610713 GAAAATGATTTCTG
1 GAAAATGATTTCTG
82610727 GAAAATGATTTCTG
1 GAAAATGATTTCTG
82610741 GAAAATGATTT
1 GAAAATGATTT
82610752 ACTTTTCTGG
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.11
14 34 0.89
ACGTcount: A:0.38, C:0.08, G:0.21, T:0.34
Consensus pattern (14 bp):
GAAAATGATTTCTG
Found at i:82611369 original size:22 final size:22
Alignment explanation
Indices: 82611343--82611386 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
82611333 TTATTAAATA
82611343 ATTTATTAAAATAATAAATTAT
1 ATTTATTAAAATAATAAATTAT
* * *
82611365 ATTTATTACATTAATAATTTAT
1 ATTTATTAAAATAATAAATTAT
82611387 TATAAGAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (22 bp):
ATTTATTAAAATAATAAATTAT
Found at i:82620009 original size:52 final size:51
Alignment explanation
Indices: 82619889--82620065 Score: 245
Period size: 52 Copynumber: 3.5 Consensus size: 51
82619879 ACTAGTGACT
* *
82619889 CAAGTGTGGTACTATGTGAAGGCCACTTTGAG-AAGAGATAGC-TTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAAAAGATAGCTTTGGTCA
82619938 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAATAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAA-AAAGATAGCTTTGGTCA
* * *
82619990 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGGTAGCTTT-GACTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAAAAGATAGCTTTGGTC-A
* *
82620041 CAAG-GTGGTGCTATGTGCAGGCCAC
1 CAAGTGTGGTACTATGTGAAGGCCAC
82620066 CGGGTATTCG
Statistics
Matches: 117, Mismatches: 7, Indels: 7
0.89 0.05 0.05
Matches are distributed among these distances:
49 31 0.26
50 22 0.19
51 23 0.20
52 41 0.35
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (51 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAAAAGATAGCTTTGGTCA
Found at i:82628758 original size:22 final size:22
Alignment explanation
Indices: 82628701--82628758 Score: 91
Period size: 22 Copynumber: 2.6 Consensus size: 22
82628691 TCACTAAATG
*
82628701 TAATAACC-CTAAACCGTAGCTC
1 TAAT-ACCACTAAATCGTAGCTC
82628723 TAATACCACTAAATCGTAGCTC
1 TAATACCACTAAATCGTAGCTC
82628745 TAATACCACTAAAT
1 TAATACCACTAAAT
82628759 ATAATAACCC
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
21 3 0.09
22 31 0.91
ACGTcount: A:0.40, C:0.28, G:0.07, T:0.26
Consensus pattern (22 bp):
TAATACCACTAAATCGTAGCTC
Found at i:82637591 original size:21 final size:20
Alignment explanation
Indices: 82637562--82637601 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
82637552 TGTGACCTTT
82637562 AATGATTGATGATAGATTATG
1 AATGATTGATGATAG-TTATG
*
82637583 AATGTTTGATGATAGTTAT
1 AATGATTGATGATAGTTAT
82637602 ACAAGTTTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (20 bp):
AATGATTGATGATAGTTATG
Found at i:82637609 original size:20 final size:21
Alignment explanation
Indices: 82637567--82637610 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
82637557 CCTTTAATGA
*
82637567 TTGATGATAGATTATGAATGT
1 TTGATGATAGATTATGAAAGT
82637588 TTGATGATAG-TTAT-ACAAGT
1 TTGATGATAGATTATGA-AAGT
82637608 TTG
1 TTG
82637611 TTAAATGATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 10 0.48
21 10 0.48
ACGTcount: A:0.32, C:0.02, G:0.23, T:0.43
Consensus pattern (21 bp):
TTGATGATAGATTATGAAAGT
Found at i:82643253 original size:24 final size:24
Alignment explanation
Indices: 82643221--82643328 Score: 101
Period size: 24 Copynumber: 4.5 Consensus size: 24
82643211 TCTTACTCAT
*
82643221 TCGCACACATAGTGCCATGT-TTCC
1 TCGCACACATAGTGCCATGTAAT-C
*
82643245 TCGCACACATAGTGCTATGTAATC
1 TCGCACACATAGTGCCATGTAATC
* * *
82643269 TCGCACACATAGTGCCACGTAGTTT
1 TCGCACACATAGTGCCATGTA-ATC
* *** *
82643294 TTGCACACATAGTGCCGCATAACC
1 TCGCACACATAGTGCCATGTAATC
82643318 TCGCACACATA
1 TCGCACACATA
82643329 ATGCTGAAAT
Statistics
Matches: 69, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
24 49 0.71
25 20 0.29
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.26
Consensus pattern (24 bp):
TCGCACACATAGTGCCATGTAATC
Found at i:82643321 original size:49 final size:47
Alignment explanation
Indices: 82643221--82643328 Score: 119
Period size: 49 Copynumber: 2.2 Consensus size: 47
82643211 TCTTACTCAT
* ** *
82643221 TCGCACACATAGTGCCATGTTTCCTCGCACACATAGTGCTATGTAATC
1 TCGCACACATAGTGCCATGTTT-CTCGCACACATAGTGCCACATAACC
* *
82643269 TCGCACACATAGTGCCACGTAGTTT-TTGCACACATAGTGCCGCATAACC
1 TCGCACACATAGTGCCA--T-GTTTCTCGCACACATAGTGCCACATAACC
82643318 TCGCACACATA
1 TCGCACACATA
82643329 ATGCTGAAAT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
48 17 0.33
49 29 0.57
50 1 0.02
51 4 0.08
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.26
Consensus pattern (47 bp):
TCGCACACATAGTGCCATGTTTCTCGCACACATAGTGCCACATAACC
Found at i:82653816 original size:46 final size:45
Alignment explanation
Indices: 82653752--82653940 Score: 200
Period size: 46 Copynumber: 4.1 Consensus size: 45
82653742 GGCTACATCT
*
82653752 CAGTGGTAGTTTCGGCTACAATACAGTGGTAGCTTTGGCTACAATA
1 CAGTGGTAGCTTCGGCTAC-ATACAGTGGTAGCTTTGGCTACAATA
* * * *
82653798 TAGTGGTAGCTTCAGCTACATCTCAGCGGTAGCTTTGGCTACAATA
1 CAGTGGTAGCTTCGGCTACAT-ACAGTGGTAGCTTTGGCTACAATA
* *
82653844 CAGTGATAGCTTCGGCTACAT-CTTAGTGGTAACTTTGGCTACAATA
1 CAGTGGTAGCTTCGGCTACATAC--AGTGGTAGCTTTGGCTACAATA
* * * * * * *
82653890 CAGAGGTAGCTTCGGTTACGTTACAGTGATAGCTTCGGCTATATTA
1 CAGTGGTAGCTTCGGCTAC-ATACAGTGGTAGCTTTGGCTACAATA
82653936 CAGTG
1 CAGTG
82653941 TGGCACTTTG
Statistics
Matches: 118, Mismatches: 20, Indels: 10
0.80 0.14 0.07
Matches are distributed among these distances:
44 1 0.01
45 2 0.02
46 113 0.96
47 1 0.01
48 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATACAGTGGTAGCTTTGGCTACAATA
Found at i:82653854 original size:69 final size:69
Alignment explanation
Indices: 82653743--82653930 Score: 211
Period size: 69 Copynumber: 2.7 Consensus size: 69
82653733 GAATCTATCG
* * *
82653743 GCTACATCTCAGTGGTAG-TTTCGGCTACAATACAGTGGTAGCTTTGGCTACAAT-ATAGTGGTA
1 GCTACATCTCAGAGGTAGCTTT-GGCTACAATACAGTGATAGCTTCGGCTAC-ATCATAGTGGTA
*
82653806 GCTTCA
64 ACTTCA
* *
82653812 GCTACATCTCAGCGGTAGCTTTGGCTACAATACAGTGATAGCTTCGGCTACATCTTAGTGGTAAC
1 GCTACATCTCAGAGGTAGCTTTGGCTACAATACAGTGATAGCTTCGGCTACATCATAGTGGTAAC
**
82653877 TTTG
66 TTCA
* * * **
82653881 GCTACAAT-ACAGAGGTAGCTTCGGTTACGTTACAGTGATAGCTTCGGCTA
1 GCTAC-ATCTCAGAGGTAGCTTTGGCTACAATACAGTGATAGCTTCGGCTA
82653931 TATTACAGTG
Statistics
Matches: 103, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
68 2 0.02
69 96 0.93
70 5 0.05
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.31
Consensus pattern (69 bp):
GCTACATCTCAGAGGTAGCTTTGGCTACAATACAGTGATAGCTTCGGCTACATCATAGTGGTAAC
TTCA
Found at i:82653897 original size:23 final size:23
Alignment explanation
Indices: 82653752--82653940 Score: 161
Period size: 23 Copynumber: 8.2 Consensus size: 23
82653742 GGCTACATCT
82653752 CAGTGGTAG-TTTCGGCTACAATA
1 CAGTGGTAGCTTT-GGCTACAATA
82653775 CAGTGGTAGCTTTGGCTACAATA
1 CAGTGGTAGCTTTGGCTACAATA
* ** *
82653798 TAGTGGTAGCTTCAGCTAC-ATCT
1 CAGTGGTAGCTTTGGCTACAAT-A
*
82653821 CAGCGGTAGCTTTGGCTACAATA
1 CAGTGGTAGCTTTGGCTACAATA
* *
82653844 CAGTGATAGCTTCGGCTAC-AT-
1 CAGTGGTAGCTTTGGCTACAATA
*
82653865 CTTAGTGGTAACTTTGGCTACAATA
1 C--AGTGGTAGCTTTGGCTACAATA
* * * **
82653890 CAGAGGTAGCTTCGGTTACGTTA
1 CAGTGGTAGCTTTGGCTACAATA
* * * *
82653913 CAGTGATAGCTTCGGCTATATTA
1 CAGTGGTAGCTTTGGCTACAATA
82653936 CAGTG
1 CAGTG
82653941 TGGCACTTTG
Statistics
Matches: 133, Mismatches: 26, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
21 1 0.01
22 4 0.03
23 120 0.90
24 7 0.05
25 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (23 bp):
CAGTGGTAGCTTTGGCTACAATA
Found at i:82659271 original size:28 final size:28
Alignment explanation
Indices: 82659203--82659294 Score: 122
Period size: 28 Copynumber: 3.4 Consensus size: 28
82659193 GATATGACAT
*
82659203 TGTGCTAAGTGAAATAAGACCATGGC-A
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
*
82659230 --T-CTAAGTGAAATAAGTCCACGGCAA
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
82659255 TGTGCTAAGTGAAATAAGTCCATGG-AA
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
82659282 TTGTGCTAAGTGA
1 -TGTGCTAAGTGA
82659295 GAAATTTCCT
Statistics
Matches: 57, Mismatches: 3, Indels: 9
0.83 0.04 0.13
Matches are distributed among these distances:
24 20 0.35
25 2 0.04
27 3 0.05
28 32 0.56
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (28 bp):
TGTGCTAAGTGAAATAAGTCCATGGCAA
Found at i:82659425 original size:51 final size:51
Alignment explanation
Indices: 82659318--82659463 Score: 208
Period size: 51 Copynumber: 2.9 Consensus size: 51
82659308 TGGATCTTAG
* *
82659318 GAATAAAATATCATTGGATACAAGTGTGGTACTA--TGAAGGCCACTTTAT
1 GAATAAAATAGCATTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTAT
* *
82659367 GAATAAAATAGCCTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCATTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTAT
* *
82659418 GAATAAAATAGCTTTGG-CTACAAGGGTGGTACTATGTGAAGGCCAC
1 GAATAAAATAGCATTGGAC-ACAAGTGTGGTACTATGTGAAGGCCAC
82659464 CGTATATCCG
Statistics
Matches: 88, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
49 31 0.35
50 1 0.01
51 56 0.64
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (51 bp):
GAATAAAATAGCATTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTAT
Found at i:82662642 original size:18 final size:20
Alignment explanation
Indices: 82662606--82662652 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
82662596 AGTTGTAAGT
82662606 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
82662626 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
82662645 ATGATATA
1 AT-ATATA
82662653 ACCTGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:82663118 original size:50 final size:50
Alignment explanation
Indices: 82663041--82663331 Score: 210
Period size: 50 Copynumber: 5.8 Consensus size: 50
82663031 TTAACTTCGA
* *
82663041 TCACATGTGTAGTACTAAGTGTC-GGCTACTACGTGTATCAAATGGTTAAG
1 TCACATGTGTAGTACTAAGTG-CAGGCTACTACGTGTACCAAATGGATAAG
* * * * *
82663091 TCACATATGCAGTACTACGTGCAGGCTACTACGTGTACCAAATTGATAGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATGGATAAG
* * * * * ** ** **
82663141 TCGCATGTGTAGTACTAAGTGTAGGCTACCATGCGTACC-CGTTAACTTCG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATGGA-TAAG
* * * * * *
82663191 ATCACTTGTGTAGTACTAAGCGTAGGCTACTACGTGTA-TAAGATGGTTAAA
1 -TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAA-ATGGATAAG
** * * * * *
82663242 TCATGTGTGTAGTACTAAGTGCATGCTACTACGTGTACTAGATTGATAGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATGGATAAG
* * * *
82663292 TCGCATGTATAGTACTAAGTGCCGGCTACTATGTGTACCA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA
82663332 GAGAGCTTCG
Statistics
Matches: 182, Mismatches: 53, Indels: 12
0.74 0.21 0.05
Matches are distributed among these distances:
49 4 0.02
50 143 0.79
51 34 0.19
52 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.31
Consensus pattern (50 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATGGATAAG
Found at i:82663270 original size:151 final size:151
Alignment explanation
Indices: 82662995--82663330 Score: 485
Period size: 151 Copynumber: 2.2 Consensus size: 151
82662985 GTGAGTCACG
* *
82662995 TGTGTAGTACTAAGTGCAGGCTACTATGCCTACCCTTTAACTTCGATCACATGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACATGTGTAGTACTAAG
* * * *
82663060 TGTCGGCTACTACGTGTATCAAATGGTTAAGTCACATATGCAGTACTACGTGCAGGCTACTACGT
66 CGTAGGCTACTACGTGTATCAAATGGTTAAATCACATATGCAGTACTAAGTGCAGGCTACTACGT
82663125 GTACCAAATTGATAGGTCGCA
131 GTACCAAATTGATAGGTCGCA
* * *
82663146 TGTGTAGTACTAAGTGTAGGCTACCATGCGTACCCGTTAACTTCGATCACTTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACATGTGTAGTACTAAG
** * * *
82663211 CGTAGGCTACTACGTGTAT-AAGATGGTTAAATCATGTGTGTAGTACTAAGTGCATGCTACTACG
66 CGTAGGCTACTACGTGTATCAA-ATGGTTAAATCACATATGCAGTACTAAGTGCAGGCTACTACG
* *
82663275 TGTACTAGATTGATAGGTCGCA
130 TGTACCAAATTGATAGGTCGCA
* * *
82663297 TGTATAGTACTAAGTGCCGGCTACTATGTGTACC
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
82663331 AGAGAGCTTC
Statistics
Matches: 163, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
150 2 0.01
151 161 0.99
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.31
Consensus pattern (151 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACATGTGTAGTACTAAG
CGTAGGCTACTACGTGTATCAAATGGTTAAATCACATATGCAGTACTAAGTGCAGGCTACTACGT
GTACCAAATTGATAGGTCGCA
Found at i:82663554 original size:16 final size:16
Alignment explanation
Indices: 82663533--82663564 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
82663523 AGAATAGAGT
82663533 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
82663549 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
82663565 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:82666848 original size:15 final size:15
Alignment explanation
Indices: 82666828--82666866 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
82666818 TATGATATTG
82666828 TATCTTGGATTTCCT
1 TATCTTGGATTTCCT
*
82666843 TATCTTGGATTTCTT
1 TATCTTGGATTTCCT
*
82666858 TCTCTTGGA
1 TATCTTGGA
82666867 GATCTTTCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.13, C:0.18, G:0.15, T:0.54
Consensus pattern (15 bp):
TATCTTGGATTTCCT
Found at i:82668061 original size:27 final size:27
Alignment explanation
Indices: 82667983--82668202 Score: 259
Period size: 27 Copynumber: 8.1 Consensus size: 27
82667973 AGCATGGCTG
** *
82667983 CCAGAACAGATA-ATGTGATAGAGTCA
1 CCAGAACAGATATATGTGGCAGAGCCA
* *
82668009 CCAGATACAAATA-ATCATGGCAGAGCCA
1 CCAGA-ACAGATATAT-GTGGCAGAGCCA
*
82668037 CCATAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
* *
82668064 CCATATCAGATA-ATCGTGGCAGAGCCA
1 CCAGAACAGATATAT-GTGGCAGAGCCA
82668091 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
* *
82668118 CCAGATCAGATA-ATCGTGGCAAAGCCA
1 CCAGAACAGATATAT-GTGGCAGAGCCA
82668145 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
* * *
82668172 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCA
82668199 CCAG
1 CCAG
82668203 GACGCTTCCT
Statistics
Matches: 169, Mismatches: 18, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
26 9 0.05
27 142 0.84
28 18 0.11
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATATATGTGGCAGAGCCA
Found at i:82668077 original size:54 final size:54
Alignment explanation
Indices: 82667983--82668202 Score: 325
Period size: 54 Copynumber: 4.1 Consensus size: 54
82667973 AGCATGGCTG
** * * *
82667983 CCAGAACAGATA-ATGTGATAGAGTCACCAGATACAAATAATCATGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* *
82668037 CCATAACAGATATATGTGGCAGAGCCACCATATCAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
*
82668091 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAAAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
* * *
82668145 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
82668199 CCAG
1 CCAG
82668203 GACGCTTCCT
Statistics
Matches: 152, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
54 136 0.89
55 16 0.11
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:82676047 original size:27 final size:26
Alignment explanation
Indices: 82675985--82676258 Score: 305
Period size: 27 Copynumber: 10.2 Consensus size: 26
82675975 AGCATGGCTG
* * * *
82675985 CCAGAATAGATAATTTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
82676011 CTAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
82676039 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* **
82676066 TCAGATGAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
82676093 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
82676120 CCAGATCAAATAATCGTGGTAGAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
82676147 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
82676174 CCAGATCAAATAATCGTGGTAGAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
82676201 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
82676228 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
82676255 CCAG
1 CCAG
82676259 GACGCTTCCT
Statistics
Matches: 212, Mismatches: 27, Indels: 17
0.83 0.11 0.07
Matches are distributed among these distances:
26 10 0.05
27 181 0.85
28 21 0.10
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:82676179 original size:108 final size:108
Alignment explanation
Indices: 82675985--82676258 Score: 406
Period size: 108 Copynumber: 2.5 Consensus size: 108
82675975 AGCATGGCTG
* * * * *
82675985 CCAGAATAGATA-ATTTGACAGAGTCACTAGATACAGATAATCGTGGCAGAGCCACCAGAACAGA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCACCAGAACAGA
* * *
82676049 TATATGTGGCAGAGCCATCAGATGAGATAATCGTGGCAGAGCCA
65 TATATGTGGCAGAGCCACCAGATCAAATAATCGTGGCAGAGCCA
* *
82676093 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAAATAATCGTGGTAGAGCCACCAGAACAGAT
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCCACCAGAACAGAT
*
82676158 ATATGTGGCAGAGCCACCAGATCAAATAATCGTGGTAGAGCCA
66 ATATGTGGCAGAGCCACCAGATCAAATAATCGTGGCAGAGCCA
* * *
82676201 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCACCAG
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCCACCAG
82676259 GACGCTTCCT
Statistics
Matches: 149, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
108 133 0.89
109 16 0.11
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (108 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCCACCAGAACAGAT
ATATGTGGCAGAGCCACCAGATCAAATAATCGTGGCAGAGCCA
Found at i:82681132 original size:101 final size:101
Alignment explanation
Indices: 82680957--82681138 Score: 265
Period size: 101 Copynumber: 1.8 Consensus size: 101
82680947 TCGTTGTGAG
* ** **
82680957 TCACGTGTGCAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTTGCATGTGTAGTAC
1 TCACGTGTGCAGTACTAAGTGCAGGCTACTACATGTACCAGATGGATAAATCACATGTGTAGTAC
82681022 TAAGTGCAGGCTACTATGCATACCCGTTAACTTCGA
66 TAAGTGCAGGCTACTATGCATACCCGTTAACTTCGA
* * ** * *
82681058 TCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTATTAGATGGTTAAATCACGTGTGTAGTAC
1 TCACGTGTGCAGTACTAAGTGCAGGCTACTACATGTACCAGATGGATAAATCACATGTGTAGTAC
82681123 TAAGTGCAGGCTACTA
66 TAAGTGCAGGCTACTA
82681139 CGTGTATCAG
Statistics
Matches: 70, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
101 70 1.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (101 bp):
TCACGTGTGCAGTACTAAGTGCAGGCTACTACATGTACCAGATGGATAAATCACATGTGTAGTAC
TAAGTGCAGGCTACTATGCATACCCGTTAACTTCGA
Found at i:82681134 original size:50 final size:50
Alignment explanation
Indices: 82680957--82681293 Score: 253
Period size: 50 Copynumber: 6.9 Consensus size: 50
82680947 TCGTTGTGAG
* * * * **
82680957 TCACGTGTGCAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTTAAA
** * * * * ** **
82681007 TTGCATGTGTAGTACTAAGTGCAGGCTACT--ATGCATACCCGTTAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATG--TATCAGAT-GGTTAAA
* *
82681058 TCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTATTAGATGGTTAAA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTTAAA
* * * **
82681108 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGATAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTTAAA
* * * * **
82681158 TCGCATGTGTAGTACTAAGTGCAGGCGTAC-CCA--T-T-A-A--CTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGC-TACTACATGTATCAGATGGTTAAA
* * *
82681201 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAAG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTTAAA
* * *
82681251 TCACGTGTGTAATACTAAGTGCAAGCTACTACATGTACCAGAT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGAT
82681294 TGATAGGTTG
Statistics
Matches: 222, Mismatches: 51, Indels: 28
0.74 0.17 0.09
Matches are distributed among these distances:
42 3 0.01
43 27 0.12
45 2 0.01
46 2 0.01
47 2 0.01
48 5 0.02
50 143 0.64
51 35 0.16
53 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (50 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTTAAA
Found at i:82681259 original size:143 final size:146
Alignment explanation
Indices: 82680955--82681320 Score: 558
Period size: 143 Copynumber: 2.5 Consensus size: 146
82680945 ATTCGTTGTG
*
82680955 AGTCACGTGTGCAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTTGCATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTTGCATGTGTAGT
* *
82681020 ACTAAGTGCAGGCTACTATGCATACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGTAGGCT
66 ACTAAGTGCAGG--AC--TG-ATACCCATTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCT
* *
82681085 ACTACATGTATTAGATGGTTA
126 ACTACATGTATCAAATGGTTA
* * * *
82681106 AATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGATAGGTCGCATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTTGCATGTGTAGT
82681171 ACTAAGTGCAGG-C-G-TACCCATTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTAC
66 ACTAAGTGCAGGACTGATACCCATTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTAC
*
82681233 GTGTATCAAATGGTTA
131 ATGTATCAAATGGTTA
* *
82681249 AGTCACGTGTGTAATACTAAGTGCAAGCTACTACATGTACCAGATTGATAGGTTGCATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTTGCATGTGTAGT
82681314 ACTAAGT
66 ACTAAGT
82681321 ACAAGCTACT
Statistics
Matches: 199, Mismatches: 16, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
143 125 0.63
145 1 0.01
148 1 0.01
151 72 0.36
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (146 bp):
AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTTGCATGTGTAGT
ACTAAGTGCAGGACTGATACCCATTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTAC
ATGTATCAAATGGTTA
Found at i:82681310 original size:50 final size:50
Alignment explanation
Indices: 82681201--82681331 Score: 145
Period size: 50 Copynumber: 2.6 Consensus size: 50
82681191 TTAACTTCGA
* * * * *
82681201 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAAG
1 TCACATGTGTAGTACTAAGTGCAAGCTACTACATGTACCAAATGGATAAG
* * * * *
82681251 TCACGTGTGTAATACTAAGTGCAAGCTACTACATGTACCAGATTGATAGG
1 TCACATGTGTAGTACTAAGTGCAAGCTACTACATGTACCAAATGGATAAG
** *
82681301 TTGCATGTGTAGTACTAAGTACAAGCTACTA
1 TCACATGTGTAGTACTAAGTGCAAGCTACTA
82681332 TGCGTACCAG
Statistics
Matches: 68, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 68 1.00
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.30
Consensus pattern (50 bp):
TCACATGTGTAGTACTAAGTGCAAGCTACTACATGTACCAAATGGATAAG
Found at i:82681563 original size:16 final size:16
Alignment explanation
Indices: 82681542--82681573 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
82681532 AGAATAGAGT
82681542 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
82681558 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
82681574 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:82682099 original size:16 final size:18
Alignment explanation
Indices: 82682066--82682100 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
82682056 TAATGGATCT
82682066 TAGTATGACTCGAGAAAA
1 TAGTATGACTCGAGAAAA
82682084 TAGTATGAC-C-AGAAAA
1 TAGTATGACTCGAGAAAA
82682100 T
1 T
82682101 CAGCAAAAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 1 0.06
18 9 0.53
ACGTcount: A:0.46, C:0.11, G:0.20, T:0.23
Consensus pattern (18 bp):
TAGTATGACTCGAGAAAA
Found at i:82686187 original size:29 final size:29
Alignment explanation
Indices: 82686100--82686218 Score: 143
Period size: 29 Copynumber: 4.2 Consensus size: 29
82686090 GTGAGCATGA
*
82686100 ATAT-AATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGAATTGGGCCTAATGGGCC
* * *
82686128 ACATAAATGTGATTTGGGCCTAAAGGGCC
1 ATATAAATGTGAATTGGGCCTAATGGGCC
82686157 ATATAAATGTGAATTGGGCCTAATGGGCC
1 ATATAAATGTGAATTGGGCCTAATGGGCC
* * * * *
82686186 ATGTGAATAT-AATTGGGTCTAGTGGGCC
1 ATATAAATGTGAATTGGGCCTAATGGGCC
82686214 ATATA
1 ATATA
82686219 CAGGTATGTG
Statistics
Matches: 78, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 22 0.28
29 56 0.72
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.29
Consensus pattern (29 bp):
ATATAAATGTGAATTGGGCCTAATGGGCC
Found at i:82688626 original size:38 final size:38
Alignment explanation
Indices: 82688556--82688641 Score: 109
Period size: 38 Copynumber: 2.3 Consensus size: 38
82688546 GCATGAACAA
* *
82688556 CATGCCTACTATTACTTTTAAACCAAACACATGTTAAG
1 CATGTCTACTATTACTGTTAAACCAAACACATGTTAAG
* ** * *
82688594 CATGTCTACTATTACTGTTGAACTGAATACATGTTTAG
1 CATGTCTACTATTACTGTTAAACCAAACACATGTTAAG
82688632 CATGTCTACT
1 CATGTCTACT
82688642 GTTTTACATG
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.36
Consensus pattern (38 bp):
CATGTCTACTATTACTGTTAAACCAAACACATGTTAAG
Found at i:82690174 original size:54 final size:54
Alignment explanation
Indices: 82690115--82690404 Score: 243
Period size: 54 Copynumber: 5.4 Consensus size: 54
82690105 TATAGGGTAG
* * ** *
82690115 AATTACTGAAATACCCTTGTTTTACAAAATTACCAAAATACCCTCGA-TTAGAAA
1 AATTACTAAAATACCCTTGATTTGTAAAATTACCAAAATACCCT-GATTTAGTAA
* * * * *
82690169 AATTACCAAAATACCCGTGGTTCGTAAAAATTACCAAAATACCACTGATTT-GTGA
1 AATTACTAAAATACCCTTGATTTGT-AAAATTACCAAAATACC-CTGATTTAGTAA
* * ** * * *
82690224 AATTATTGAAATACCCTTGACCTGTAAAATTACCAAAATATCCTCAACTT-GTAA
1 AATTACTAAAATACCCTTGATTTGTAAAATTACCAAAATACCCT-GATTTAGTAA
* * *
82690278 AATTA-TCGAAATACCCTCGATTTGTAAAATTACCAAAATACCGTTGATTTAG-AA
1 AATTACT-AAAATACCCTTGATTTGTAAAATTACCAAAATACC-CTGATTTAGTAA
* * * *
82690332 AATTACCAAAATACCCTTGATTTGGAAAATTA-CATAAATACACTGATTTA-CAA
1 AATTACTAAAATACCCTTGATTTGTAAAATTACCA-AAATACCCTGATTTAGTAA
*
82690385 AATTACAAAAATACCCTTGA
1 AATTACTAAAATACCCTTGA
82690405 CTTTCAAAAA
Statistics
Matches: 191, Mismatches: 35, Indels: 21
0.77 0.14 0.09
Matches are distributed among these distances:
53 33 0.17
54 114 0.60
55 40 0.21
56 4 0.02
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGATTTGTAAAATTACCAAAATACCCTGATTTAGTAA
Found at i:82690415 original size:81 final size:79
Alignment explanation
Indices: 82690135--82690444 Score: 239
Period size: 81 Copynumber: 3.8 Consensus size: 79
82690125 ATACCCTTGT
* * * * *
82690135 TTTACAAAATTACCAAAATACCCTCGATTAGAAAAATTACCAAAATACCCGTGGTTCGTAAAAAT
1 TTTACAAAATTACCAAAATACCCTTGATT-TAAAAATTACCAAAATACCCTTGATTTG-AAAAAT
82690200 TACCAAAATACCACTGA
64 TACCAAAATA-CACTGA
*** *** * * ** * *
82690217 TTTGTGAAATTATTGAAATACCCTTGACCTGT-AAAATTACCAAAATATCCTCAACTTGTAAAAT
1 TTTACAAAATTACCAAAATACCCTTGA--TTTAAAAATTACCAAAATACCCTTGATTTGAAAAAT
* * *
82690281 TATCGAAATACCCTCGA
64 TACCAAAATACACT-GA
** * *
82690298 TTTGTAAAATTACCAAAATACCGTTGATTTAGAAAATTACCAAAATACCCTTGATTTGGAAAATT
1 TTTACAAAATTACCAAAATACCCTTGATTTA-AAAATTACCAAAATACCCTTGATTTGAAAAATT
82690363 A-CATAAATACACTGA
65 ACCA-AAATACACTGA
* * * * *
82690378 TTTACAAAATTACAAAAATACCCTTGACTTTCAAAAATTA-TAGAAATACCATTGGTTTGCAAAA
1 TTTACAAAATTACCAAAATACCCTTGA-TTT-AAAAATTACCA-AAATACCCTTGATTTGAAAAA
82690442 TTA
63 TTA
82690445 TCGAAATAAC
Statistics
Matches: 178, Mismatches: 41, Indels: 19
0.75 0.17 0.08
Matches are distributed among these distances:
79 2 0.01
80 30 0.17
81 105 0.59
82 40 0.22
84 1 0.01
ACGTcount: A:0.43, C:0.18, G:0.09, T:0.30
Consensus pattern (79 bp):
TTTACAAAATTACCAAAATACCCTTGATTTAAAAATTACCAAAATACCCTTGATTTGAAAAATTA
CCAAAATACACTGA
Found at i:82690450 original size:27 final size:27
Alignment explanation
Indices: 82690123--82690463 Score: 210
Period size: 27 Copynumber: 12.6 Consensus size: 27
82690113 AGAATTACTG
* * *
82690123 AAATACCCTTGTTTTACAAAATTACCA
1 AAATACCCTTGATTTGCAAAATTATCA
* * * *
82690150 AAATACCCTCGATTAGAAAAATTACCA
1 AAATACCCTTGATTTGCAAAATTATCA
* * * * *
82690177 AAATACCCGTGGTTCGTAAAAATTACCA
1 AAATACCCTTGATTTG-CAAAATTATCA
** **
82690205 AAATACCAC-TGATTTGTGAAATTATTG
1 AAATACC-CTTGATTTGCAAAATTATCA
** * *
82690232 AAATACCCTTGACCTGTAAAATTACCA
1 AAATACCCTTGATTTGCAAAATTATCA
* ** * * *
82690259 AAATATCCTCAACTTGTAAAATTATCG
1 AAATACCCTTGATTTGCAAAATTATCA
* * *
82690286 AAATACCCTCGATTTGTAAAATTACCA
1 AAATACCCTTGATTTGCAAAATTATCA
* *
82690313 AAATACCGTTGATTTAG-AAAATTACCA
1 AAATACCCTTGATTT-GCAAAATTATCA
*
82690340 AAATACCCTTGATTTGGAAAATTA-CA
1 AAATACCCTTGATTTGCAAAATTATCA
* *
82690366 TAAATACAC-TGATTTACAAAATTA-CAA
1 -AAATACCCTTGATTTGCAAAATTATC-A
82690393 AAATACCCTTGACTTT-CAAAAATTAT-A
1 AAATACCCTTGA-TTTGC-AAAATTATCA
* * *
82690420 GAAATACCATTGGTTTGCAAAATTATCG
1 -AAATACCCTTGATTTGCAAAATTATCA
* *
82690448 AAATAACCTTGGTTTG
1 AAATACCCTTGATTTG
82690464 TAGATTTACC
Statistics
Matches: 255, Mismatches: 45, Indels: 28
0.78 0.14 0.09
Matches are distributed among these distances:
26 25 0.10
27 184 0.72
28 45 0.18
29 1 0.00
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATACCCTTGATTTGCAAAATTATCA
Found at i:82691015 original size:22 final size:21
Alignment explanation
Indices: 82690966--82691027 Score: 70
Period size: 22 Copynumber: 2.9 Consensus size: 21
82690956 AATTATTCTA
* *
82690966 ATTATGGCTTTGCGCCAACCT
1 ATTATGGCTCTGTGCCAACCT
*
82690987 ACATATGGCTCTGTGCCAACCT
1 A-TTATGGCTCTGTGCCAACCT
*
82691009 GATTATGGCTGTGTGCCAA
1 -ATTATGGCTCTGTGCCAA
82691028 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.21, C:0.26, G:0.23, T:0.31
Consensus pattern (21 bp):
ATTATGGCTCTGTGCCAACCT
Found at i:82693356 original size:26 final size:26
Alignment explanation
Indices: 82693320--82693373 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
82693310 CAAACGAATA
82693320 TATCAAACATAATTTGTCTAAAATTT
1 TATCAAACATAATTTGTCTAAAATTT
*
82693346 TATCAAACATAATTTGTCTAATATTT
1 TATCAAACATAATTTGTCTAAAATTT
82693372 TA
1 TA
82693374 ACATACCATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.41, C:0.11, G:0.04, T:0.44
Consensus pattern (26 bp):
TATCAAACATAATTTGTCTAAAATTT
Found at i:82696110 original size:14 final size:15
Alignment explanation
Indices: 82696093--82696121 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
82696083 TCACGAAAAT
82696093 TTCACACAT-ATAAA
1 TTCACACATAATAAA
82696107 TTCACACATAATAAA
1 TTCACACATAATAAA
82696122 CATAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:82699166 original size:59 final size:59
Alignment explanation
Indices: 82699087--82699205 Score: 175
Period size: 59 Copynumber: 2.0 Consensus size: 59
82699077 AGGTTGAATG
*
82699087 TATACCTTCTAAAACTGAAGAATGGAAAATAACGTTGTTGGTTGGATTCCTTTGGATGA
1 TATACCTTCTAAAACTGAAGAATGGAAAATAACGTTGTTGGTTAGATTCCTTTGGATGA
* * * * * *
82699146 TATACCTTTTGAAATTGAAGAATGGCAAATTATGTTGTTGGTTAGATTCCTTTGGATGA
1 TATACCTTCTAAAACTGAAGAATGGAAAATAACGTTGTTGGTTAGATTCCTTTGGATGA
82699205 T
1 T
82699206 GTCAATCCTA
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
59 53 1.00
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.38
Consensus pattern (59 bp):
TATACCTTCTAAAACTGAAGAATGGAAAATAACGTTGTTGGTTAGATTCCTTTGGATGA
Found at i:82711858 original size:27 final size:27
Alignment explanation
Indices: 82711828--82711960 Score: 180
Period size: 27 Copynumber: 4.9 Consensus size: 27
82711818 TGCCCTCGAA
*
82711828 TTGTAAAATTATCGAAATACCCCTAGT
1 TTGTAAAATTATCGAAATACCCTTAGT
*
82711855 TTGTAAAATTA-CTGAAATACCCTTAGA
1 TTGTAAAATTATC-GAAATACCCTTAGT
82711882 TTGTAAAATTATCGAAATACCCTTAGT
1 TTGTAAAATTATCGAAATACCCTTAGT
* * *
82711909 TTTTAAAATTACCGAAACACCCTTA-T
1 TTGTAAAATTATCGAAATACCCTTAGT
*
82711935 AGTGTAAAATTATCGAAATACCCTTA
1 -TTGTAAAATTATCGAAATACCCTTA
82711961 TAGGGTAAAA
Statistics
Matches: 93, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
26 2 0.02
27 90 0.97
28 1 0.01
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.34
Consensus pattern (27 bp):
TTGTAAAATTATCGAAATACCCTTAGT
Found at i:82711971 original size:54 final size:54
Alignment explanation
Indices: 82711829--82711960 Score: 210
Period size: 54 Copynumber: 2.4 Consensus size: 54
82711819 GCCCTCGAAT
* * * *
82711829 TGTAAAATTATCGAAATACCCCTAGTTTGTAAAATTACTGAAATACCCTTAGAT
1 TGTAAAATTATCGAAATACCCTTAGTTTGTAAAATTACCGAAACACCCTTAGAG
* *
82711883 TGTAAAATTATCGAAATACCCTTAGTTTTTAAAATTACCGAAACACCCTTATAG
1 TGTAAAATTATCGAAATACCCTTAGTTTGTAAAATTACCGAAACACCCTTAGAG
82711937 TGTAAAATTATCGAAATACCCTTA
1 TGTAAAATTATCGAAATACCCTTA
82711961 TAGGGTAAAA
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 72 1.00
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.33
Consensus pattern (54 bp):
TGTAAAATTATCGAAATACCCTTAGTTTGTAAAATTACCGAAACACCCTTAGAG
Found at i:82723668 original size:8 final size:8
Alignment explanation
Indices: 82723657--82723685 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
82723647 CTAAAGTGTT
82723657 AAAATGTG
1 AAAATGTG
82723665 AAAATGTG
1 AAAATGTG
82723673 AAAATGTG
1 AAAATGTG
82723681 AAAAT
1 AAAAT
82723686 ATGAGGGTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.55, C:0.00, G:0.21, T:0.24
Consensus pattern (8 bp):
AAAATGTG
Found at i:82724199 original size:43 final size:42
Alignment explanation
Indices: 82724051--82724220 Score: 137
Period size: 43 Copynumber: 4.0 Consensus size: 42
82724041 TAGGATTCTA
* * * ** *
82724051 ATATGTGATTTCGTGTAAGACTACGTCTGGGACATTGGCATTG
1 ATATTTGATTACGTGTAAGACCATATCTGGGACA-TGGCATCG
* * *
82724094 AT-TTGAGATTTACGTGTAAGACCATGTCTGGGACATCAGCATCG
1 ATATT-TGA-TTACGTGTAAGACCATATCTGGGACAT-GGCATCG
* * *
82724138 -TATTTAATTTCGTGTAAGACCCTATCTGGGACAGTGGCATCG
1 ATATTTGATTACGTGTAAGACCATATCTGGGACA-TGGCATCG
* **
82724180 ATATTTGATTACATGTAAGACCACGTCTGGGACATAGGCAT
1 ATATTTGATTACGTGTAAGACCATATCTGGGACAT-GGCAT
82724221 TGTACGAGCT
Statistics
Matches: 101, Mismatches: 19, Indels: 14
0.75 0.14 0.10
Matches are distributed among these distances:
42 31 0.31
43 40 0.40
44 30 0.30
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (42 bp):
ATATTTGATTACGTGTAAGACCATATCTGGGACATGGCATCG
Found at i:82724946 original size:23 final size:23
Alignment explanation
Indices: 82724915--82724964 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
82724905 ATGTTTTGGT
*
82724915 ATGACTTTGGCTTGTGAT-TTAGC
1 ATGACTTTGGCTTG-GATATAAGC
* *
82724938 ATGATTTTGGTTTGGATATAAGC
1 ATGACTTTGGCTTGGATATAAGC
82724961 ATGA
1 ATGA
82724965 AATTGGCTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 3 0.13
23 20 0.87
ACGTcount: A:0.24, C:0.08, G:0.26, T:0.42
Consensus pattern (23 bp):
ATGACTTTGGCTTGGATATAAGC
Found at i:82734732 original size:13 final size:13
Alignment explanation
Indices: 82734714--82734749 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
82734704 AGTACACGGG
82734714 CGTGTGACTTGGC
1 CGTGTGACTTGGC
82734727 CGTGTGACTTGGC
1 CGTGTGACTTGGC
82734740 CGTGTGACTT
1 CGTGTGACTT
82734750 CATTTTATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.08, C:0.22, G:0.36, T:0.33
Consensus pattern (13 bp):
CGTGTGACTTGGC
Found at i:82736104 original size:27 final size:28
Alignment explanation
Indices: 82736074--82736128 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
82736064 GAATGTTTCC
*
82736074 ATTGACGA-ATATGTATGAGT-TTTGATG
1 ATTGACGATATAT-TATGAATATTTGATG
*
82736101 ATTGATGATATATTATGAATATTTGATG
1 ATTGACGATATATTATGAATATTTGATG
82736129 TTAGTTAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 13 0.54
28 11 0.46
ACGTcount: A:0.33, C:0.02, G:0.22, T:0.44
Consensus pattern (28 bp):
ATTGACGATATATTATGAATATTTGATG
Found at i:82736697 original size:28 final size:28
Alignment explanation
Indices: 82736657--82736838 Score: 211
Period size: 28 Copynumber: 6.5 Consensus size: 28
82736647 GGTTATGTAG
82736657 GGCACTTAGTGTGCGAGACATTGATTAT
1 GGCACTTAGTGTGCGAGACATTGATTAT
* *
82736685 GGCATTTAGTGTGCTAGACATTGATTAT
1 GGCACTTAGTGTGCGAGACATTGATTAT
* *
82736713 GGCACTTAGTGTACGAGACATTGATTGT
1 GGCACTTAGTGTGCGAGACATTGATTAT
* ** **
82736741 GCCACTTAGTGTGCGAGACATCAAGCAT
1 GGCACTTAGTGTGCGAGACATTGATTAT
* ** * *
82736769 AGCACTTAGTGTATGAGAGATTGAATAT
1 GGCACTTAGTGTGCGAGACATTGATTAT
* **
82736797 GGCACTTAGTGTGCGAGGCATTGGGTAT
1 GGCACTTAGTGTGCGAGACATTGATTAT
82736825 GGCACTTAGTGTGC
1 GGCACTTAGTGTGC
82736839 AAAATATTGA
Statistics
Matches: 125, Mismatches: 29, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 125 1.00
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (28 bp):
GGCACTTAGTGTGCGAGACATTGATTAT
Found at i:82743020 original size:19 final size:19
Alignment explanation
Indices: 82742996--82743040 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
82742986 TAGCCTGAGG
*
82742996 ACACGGGTGTGTCAAAGGT
1 ACACGGGTGTGTCAAAGGC
82743015 ACACGGGTGTGTCAAAGGC
1 ACACGGGTGTGTCAAAGGC
82743034 ACACGGG
1 ACACGGG
82743041 CATGTCCCTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.38, T:0.16
Consensus pattern (19 bp):
ACACGGGTGTGTCAAAGGC
Found at i:82743046 original size:19 final size:19
Alignment explanation
Indices: 82743005--82743046 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
82742995 GACACGGGTG
* **
82743005 TGTCAAAGGTACACGGGTG
1 TGTCAAAGGCACACGGGCA
82743024 TGTCAAAGGCACACGGGCA
1 TGTCAAAGGCACACGGGCA
82743043 TGTC
1 TGTC
82743047 CCTGTGTCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.21, G:0.33, T:0.19
Consensus pattern (19 bp):
TGTCAAAGGCACACGGGCA
Found at i:82744697 original size:18 final size:18
Alignment explanation
Indices: 82744674--82744708 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
82744664 TATATGATCT
*
82744674 TATTTTCTTTCTTTCTGG
1 TATTTTCTTACTTTCTGG
*
82744692 TATTTTGTTACTTTCTG
1 TATTTTCTTACTTTCTG
82744709 CTTATTGGGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.09, C:0.14, G:0.11, T:0.66
Consensus pattern (18 bp):
TATTTTCTTACTTTCTGG
Found at i:82744991 original size:15 final size:15
Alignment explanation
Indices: 82744936--82744994 Score: 64
Period size: 15 Copynumber: 3.9 Consensus size: 15
82744926 GTATTGTAAT
*
82744936 TTGGATTTCCTTATC
1 TTGGATTTCTTTATC
* * *
82744951 TTCGACTTCTCTATC
1 TTGGATTTCTTTATC
* *
82744966 TGGGATTTCTTTATG
1 TTGGATTTCTTTATC
82744981 TTGGATTTCTTTAT
1 TTGGATTTCTTTAT
82744995 TCTAGGTTTT
Statistics
Matches: 34, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.14, C:0.17, G:0.15, T:0.54
Consensus pattern (15 bp):
TTGGATTTCTTTATC
Found at i:82748298 original size:24 final size:24
Alignment explanation
Indices: 82748266--82748319 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
82748256 TGGAAGGTAT
* *
82748266 GTATATATGTGTTTATGTGTATAA
1 GTATATATGTGTTCAAGTGTATAA
* *
82748290 GTATGTATGTGTTCAAGTGTATAT
1 GTATATATGTGTTCAAGTGTATAA
82748314 GTATAT
1 GTATAT
82748320 GAAGGTGTAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.28, C:0.02, G:0.22, T:0.48
Consensus pattern (24 bp):
GTATATATGTGTTCAAGTGTATAA
Found at i:82767191 original size:43 final size:43
Alignment explanation
Indices: 82767143--82767310 Score: 146
Period size: 43 Copynumber: 3.9 Consensus size: 43
82767133 ATCAAGATGT
* *
82767143 GATTACATGTAAGAACATGTCTGGGACATTGGCATTGTATTGA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTGA
* * *
82767186 GATTACACGTAAGACCATGTCTGTGG-CATTGGCATCGTTAAT-C
1 GATTACATGTAAGACCATGTCTG-GGACATTGGCATCG-TATTGA
* * * * * *
82767229 GATTTCATGTAAGACCTTGTCTCGGACAGTGTCATCG-ATATGT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT-TGA
* * * *
82767272 GATAACATGTAAGACCATATCTGGGATA-TGGCATTGTAT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
82767311 GAGCTTATGT
Statistics
Matches: 98, Mismatches: 21, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
41 1 0.01
42 9 0.09
43 83 0.85
44 5 0.05
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTGA
Found at i:82781701 original size:48 final size:48
Alignment explanation
Indices: 82781649--82781915 Score: 238
Period size: 48 Copynumber: 5.5 Consensus size: 48
82781639 TGGCCACATA
* * *
82781649 ATGAGAACAAGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTT
1 ATGAGACCAAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGAT
* * * *
82781697 ATGAGACCCAGAGTAAGACCATGTCTAGG-ACATGGCATCGGCATTGAG
1 ATGAGACCAAGTGTAAGACCATGT-TTGGAACATGGCATCGGCATTGAT
* * * * * *
82781745 ATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGAC
1 ATGAGACCAAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGAT
* *
82781793 ATGTGAGCCAA-TGTAAGACCATGTTTGGAACATGGCATCGGTATTGTTAT
1 ATGAGA-CCAAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTG--AT
* * * * * *
82781843 ATGTG-TCAA-TGTAAGACCATGTCTGGGACATGGCATCGACATCGATGT
1 ATGAGACCAAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGA--T
*
82781891 ATGAGAGCCAA-TGTAAAACCATGTT
1 ATGAGA-CCAAGTGTAAGACCATGTT
82781916 CGAGACATGA
Statistics
Matches: 178, Mismatches: 32, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
46 1 0.01
47 3 0.02
48 148 0.83
49 5 0.03
50 21 0.12
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (48 bp):
ATGAGACCAAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGAT
Found at i:82781780 original size:96 final size:96
Alignment explanation
Indices: 82781649--82781915 Score: 265
Period size: 96 Copynumber: 2.8 Consensus size: 96
82781639 TGGCCACATA
* * * **
82781649 ATGAGAACAAGTGTAAGACCATGTTTGGAACATGGCATCGGCAAT-GTTATGAGACCCAGA-GTA
1 ATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGC-ATCGACATGAGACCCA-ATGTA
82781712 AGACCATGTCTAGG-ACATGGCATCGGCATTGAG
64 AGACCATGT-TAGGAACATGGCATCGGCATTGAG
* * *
82781745 ATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGACATGTGAGCCAATGTAAG
1 ATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATCGACATGAGACCCAATGTAAG
* * **
82781810 ACCATGTTTGGAACATGGCATCGGTATTGTT
66 ACCATGTTAGGAACATGGCATCGGCATTGAG
* * * * * *
82781841 AT-ATGTG-TCAATGTAAGACCATGTCTGGGACATGGCATCGACATCGATGTATGAGAGCCAATG
1 ATGA-GAGCT-AGTGTAAGACCATGTTTGGGACATGGCATCGGCATCGA--CATGAGACCCAATG
*
82781904 TAAAACCATGTT
62 TAAGACCATGTT
82781916 CGAGACATGA
Statistics
Matches: 144, Mismatches: 20, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
95 7 0.05
96 114 0.79
98 23 0.16
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (96 bp):
ATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATCGACATGAGACCCAATGTAAG
ACCATGTTAGGAACATGGCATCGGCATTGAG
Found at i:82781876 original size:144 final size:146
Alignment explanation
Indices: 82781660--82781929 Score: 368
Period size: 144 Copynumber: 1.9 Consensus size: 146
82781650 TGAGAACAAG
82781660 TGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGACCCAGAGTAAGACCATGTCTAG
1 TGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGACCCAGAGTAAGACCATGTCTAG
* * * * * * * *
82781725 GACATGGCATCGGCATTGA-G-ATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCC
66 GACATGGCATCGACATCGATGTATGAGAGCCAATGTAAAACCATGTTCGAGACATGACATCGGCC
82781788 TCGACATGTGAGCCAA
131 TCGACATGTGAGCCAA
* * ***
82781804 TGTAAGACCATGTTTGGAACATGGCATCGGTATTGTTAT-ATGTGTCA-ATGTAAGACCATGTCT
1 TGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGA-GACCCAGA-GTAAGACCATGTCT
*
82781867 GGGACATGGCATCGACATCGATGTATGAGAGCCAATGTAAAACCATGTTCGAGACATGACATC
64 AGGACATGGCATCGACATCGATGTATGAGAGCCAATGTAAAACCATGTTCGAGACATGACATC
82781930 TACATTTTAC
Statistics
Matches: 108, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
143 2 0.02
144 72 0.67
145 1 0.01
146 33 0.31
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (146 bp):
TGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGACCCAGAGTAAGACCATGTCTAG
GACATGGCATCGACATCGATGTATGAGAGCCAATGTAAAACCATGTTCGAGACATGACATCGGCC
TCGACATGTGAGCCAA
Done.