Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 25 of 276
Found at i:7798174 original size:32 final size:32
Alignment explanation
Indices: 7798138--7798223 Score: 93
Period size: 31 Copynumber: 2.7 Consensus size: 32
7798128 TTAGAATTAA
*
7798138 TGTTTTTGGTTGTATTTTTATGCTAAATTTGC
1 TGTTTTTGGTTGCATTTTTATGCTAAATTTGC
* * *
7798170 TGTTTTTGGCTGCA-TTTTATGCTATATTTGT
1 TGTTTTTGGTTGCATTTTTATGCTAAATTTGC
* * * *
7798201 TGTATTTCGTTGGATTTTAATGC
1 TGTTTTTGGTTGCATTTTTATGC
7798224 AGGAAGGGTT
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
31 25 0.57
32 19 0.43
ACGTcount: A:0.15, C:0.08, G:0.20, T:0.57
Consensus pattern (32 bp):
TGTTTTTGGTTGCATTTTTATGCTAAATTTGC
Found at i:7798365 original size:44 final size:41
Alignment explanation
Indices: 7798292--7798447 Score: 170
Period size: 43 Copynumber: 3.7 Consensus size: 41
7798282 TTTGTGGGAA
* *
7798292 AAACGCCGCTAAAAGCCATGACTTTTAGCGGCGCTTTCCCAAC
1 AAACGCCGCTAAAAACCATGACTTTTAGCGGCGCTTT--AAAC
*
7798335 AAACGCCGCTAAAAAACCATGACTTTTAGCGGCG-TTTGAAAAA
1 AAACGCCGCT-AAAAACCATGACTTTTAGCGGCGCTTT--AAAC
* * **
7798378 AAAGCGCCGTTAAAAACCATGACTTTTAGCGGTGCTTTTTAC
1 AAA-CGCCGCTAAAAACCATGACTTTTAGCGGCGCTTTAAAC
* *
7798420 AAACGCCGCTACAAGCCATGACTTTTAG
1 AAACGCCGCTAAAAACCATGACTTTTAG
7798448 TAGCGTTTTT
Statistics
Matches: 97, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
41 22 0.23
42 4 0.04
43 40 0.41
44 31 0.32
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.24
Consensus pattern (41 bp):
AAACGCCGCTAAAAACCATGACTTTTAGCGGCGCTTTAAAC
Found at i:7798452 original size:87 final size:85
Alignment explanation
Indices: 7798290--7798447 Score: 221
Period size: 87 Copynumber: 1.9 Consensus size: 85
7798280 TGTTTGTGGG
*
7798290 AAAAACGCCGCTAAAAGCCATGACTTTTAGCGGCGCTTTCCCAACAAACGCCGCTAAAAAACCAT
1 AAAAACGCCGCTAAAAACCATGACTTTTAGCGGCGCTTT-CCAACAAACGCCGCTAAAAAACCAT
7798355 GACTTTTAGCGGCGTTTGAAA
65 GACTTTTAGCGGCGTTTGAAA
* * ** * *
7798376 AAAAAGCGCCGTTAAAAACCATGACTTTTAGCGGTGCTTT-TTACAAACGCCGCT-ACAAGCCAT
1 AAAAA-CGCCGCTAAAAACCATGACTTTTAGCGGCGCTTTCCAACAAACGCCGCTAAAAAACCAT
7798439 GACTTTTAG
65 GACTTTTAG
7798448 TAGCGTTTTT
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
84 16 0.25
85 12 0.19
86 5 0.08
87 31 0.48
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.23
Consensus pattern (85 bp):
AAAAACGCCGCTAAAAACCATGACTTTTAGCGGCGCTTTCCAACAAACGCCGCTAAAAAACCATG
ACTTTTAGCGGCGTTTGAAA
Found at i:7805857 original size:76 final size:76
Alignment explanation
Indices: 7805770--7805922 Score: 297
Period size: 76 Copynumber: 2.0 Consensus size: 76
7805760 ATACCTAACG
*
7805770 AGATTGGGTTAGCAACAGCGGCGAAGCCGGAATAAATATTTAGGGGCGGATAAAATTTTAATTTT
1 AGATTGGGTTAGCAACAGCGGCGAAGCCGGAATAAATATTTAGGGGCGGATAAAATTTTAATTTC
7805835 TTATAGTTTAT
66 TTATAGTTTAT
7805846 AGATTGGGTTAGCAACAGCGGCGAAGCCGGAATAAATATTTAGGGGCGGATAAAATTTTAATTTC
1 AGATTGGGTTAGCAACAGCGGCGAAGCCGGAATAAATATTTAGGGGCGGATAAAATTTTAATTTC
7805911 TTATAGTTTAT
66 TTATAGTTTAT
7805922 A
1 A
7805923 TCTTTAGAAT
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 76 1.00
ACGTcount: A:0.33, C:0.10, G:0.25, T:0.32
Consensus pattern (76 bp):
AGATTGGGTTAGCAACAGCGGCGAAGCCGGAATAAATATTTAGGGGCGGATAAAATTTTAATTTC
TTATAGTTTAT
Found at i:7806872 original size:16 final size:16
Alignment explanation
Indices: 7806848--7806878 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7806838 TTAAAAACAC
7806848 AATTATTCTAAATAAA
1 AATTATTCTAAATAAA
*
7806864 AATTCTTCTAAATAA
1 AATTATTCTAAATAA
7806879 TGGTTGTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.39
Consensus pattern (16 bp):
AATTATTCTAAATAAA
Found at i:7806904 original size:16 final size:17
Alignment explanation
Indices: 7806885--7806920 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
7806875 ATAATGGTTG
7806885 TTTT-GAATATAACTAT
1 TTTTGGAATATAACTAT
*
7806901 TTTTGGAATATAATTAT
1 TTTTGGAATATAACTAT
7806918 TTT
1 TTT
7806921 AAACAAGAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.33, C:0.03, G:0.08, T:0.56
Consensus pattern (17 bp):
TTTTGGAATATAACTAT
Found at i:7807952 original size:22 final size:22
Alignment explanation
Indices: 7807927--7807988 Score: 56
Period size: 24 Copynumber: 2.8 Consensus size: 22
7807917 CATATTTGTG
7807927 ATATAAAAATATAATATTTCAAA
1 ATATAAAAATATAATATTT-AAA
*
7807950 TATATCAAAATAT-AT-TTTAAA
1 -ATATAAAAATATAATATTTAAA
* * *
7807971 AAATAAATATATACTATT
1 ATATAAAAATATAATATT
7807989 GTATACATTT
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
20 9 0.29
21 4 0.13
22 5 0.16
23 2 0.06
24 11 0.35
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATAAAAATATAATATTTAAA
Found at i:7812002 original size:21 final size:21
Alignment explanation
Indices: 7811976--7812016 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7811966 ATCTGCTCAA
* *
7811976 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
7811997 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
7812017 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:7817656 original size:26 final size:26
Alignment explanation
Indices: 7817599--7817656 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
7817589 GACCCGACTG
* * **
7817599 TATAAATTTTTTTATATTATGTATTA
1 TATAAATTTTTTTAAATTATGAAAAA
7817625 TATAAATTTTTTTAAATTAT-AAAAA
1 TATAAATTTTTTTAAATTATGAAAAA
7817650 TACTAAA
1 TA-TAAA
7817657 AATATTAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 4 0.15
26 23 0.85
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (26 bp):
TATAAATTTTTTTAAATTATGAAAAA
Found at i:7819748 original size:24 final size:24
Alignment explanation
Indices: 7819716--7819764 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
7819706 CTGTCTAGTC
7819716 TAGAGAATATAGATAATAAGAACA
1 TAGAGAATATAGATAATAAGAACA
7819740 TAGAGAATATAGATAATAAGAACA
1 TAGAGAATATAGATAATAAGAACA
7819764 T
1 T
7819765 GTGTCACTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.57, C:0.04, G:0.16, T:0.22
Consensus pattern (24 bp):
TAGAGAATATAGATAATAAGAACA
Found at i:7824116 original size:16 final size:16
Alignment explanation
Indices: 7824095--7824158 Score: 58
Period size: 16 Copynumber: 3.8 Consensus size: 16
7824085 ATATTTTAAC
7824095 ATAATTATTATTAAAT
1 ATAATTATTATTAAAT
* *
7824111 ATAATT-TAATAAAAAT
1 ATAATTATTAT-TAAAT
*
7824127 ATAATTTAATATTATTAAT
1 ATAA-TTATTATTA--AAT
7824146 ATAATTATTATTA
1 ATAATTATTATTA
7824159 TATGAATTAA
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
15 3 0.08
16 14 0.38
17 3 0.08
18 10 0.27
19 7 0.19
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
ATAATTATTATTAAAT
Found at i:7827530 original size:25 final size:25
Alignment explanation
Indices: 7827502--7827569 Score: 77
Period size: 23 Copynumber: 2.8 Consensus size: 25
7827492 TGGTCTTTTT
7827502 AGAATATTTAAAAAAATACATATTA
1 AGAATATTTAAAAAAATACATATTA
** * *
7827527 AGAA-AAAT-GAACAATACATATTA
1 AGAATATTTAAAAAAATACATATTA
*
7827550 AGAATCTTTAAAAAAATACA
1 AGAATATTTAAAAAAATACA
7827570 AAATAAATTC
Statistics
Matches: 32, Mismatches: 9, Indels: 4
0.71 0.20 0.09
Matches are distributed among these distances:
23 17 0.53
24 3 0.09
25 12 0.38
ACGTcount: A:0.60, C:0.07, G:0.06, T:0.26
Consensus pattern (25 bp):
AGAATATTTAAAAAAATACATATTA
Found at i:7828076 original size:17 final size:18
Alignment explanation
Indices: 7828054--7828094 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
7828044 AAAATAAAAC
* *
7828054 ATTAAAAA-TATGTTTTA
1 ATTAAAAATTATCTTTAA
7828071 ATTAAAAATTATCTTTAA
1 ATTAAAAATTATCTTTAA
7828089 ATTAAA
1 ATTAAA
7828095 TAAAGAGTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (18 bp):
ATTAAAAATTATCTTTAA
Found at i:7832862 original size:13 final size:13
Alignment explanation
Indices: 7832844--7832868 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7832834 AGAAAGGTGA
7832844 GATTCTATTTCTT
1 GATTCTATTTCTT
7832857 GATTCTATTTCT
1 GATTCTATTTCT
7832869 ATGCATTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.16, G:0.08, T:0.60
Consensus pattern (13 bp):
GATTCTATTTCTT
Found at i:7837287 original size:12 final size:12
Alignment explanation
Indices: 7837270--7837297 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
7837260 TCTATAAGAA
7837270 AACAAGACAAGT
1 AACAAGACAAGT
7837282 AACAAGACAAGT
1 AACAAGACAAGT
7837294 AACA
1 AACA
7837298 CGAGTAAGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.61, C:0.18, G:0.14, T:0.07
Consensus pattern (12 bp):
AACAAGACAAGT
Found at i:7844540 original size:10 final size:10
Alignment explanation
Indices: 7844525--7844553 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
7844515 ATTGCGTGTT
7844525 TGAATAAAAA
1 TGAATAAAAA
7844535 TGAAT-AAAA
1 TGAATAAAAA
7844544 TGAATAAAAA
1 TGAATAAAAA
7844554 AAGTGAAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.69, C:0.00, G:0.10, T:0.21
Consensus pattern (10 bp):
TGAATAAAAA
Found at i:7844847 original size:26 final size:26
Alignment explanation
Indices: 7844812--7844883 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
7844802 GAATTTCTTG
* *
7844812 AAATTTTACTAAGAGTAAAATCGTCA
1 AAATTTTACTAAGGGTAAAATCATCA
* *
7844838 AATTTTTACTAGGGGTAAAATCATCA
1 AAATTTTACTAAGGGTAAAATCATCA
7844864 AAATTTTACT-AGGGTAAAAT
1 AAATTTTACTAAGGGTAAAAT
7844884 TGGGATGAGA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
25 9 0.22
26 31 0.77
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (26 bp):
AAATTTTACTAAGGGTAAAATCATCA
Found at i:7846799 original size:46 final size:44
Alignment explanation
Indices: 7846712--7846837 Score: 157
Period size: 46 Copynumber: 2.8 Consensus size: 44
7846702 ATATTTGTAT
*
7846712 CGATGCCATGTCCCAGACATGGTCTTACACT-GACACATCTCGTA-GC
1 CGATG-CATGTCCCAAACAT-GTCTTACACTAG-CACATCTCG-AGGC
*
7846758 GGATGCATGTCCCAAACATGTCTTACACTAGCTTACATCTCGAGGC
1 CGATGCATGTCCCAAACATGTCTTACACTAGC--ACATCTCGAGGC
*
7846804 CGATGCATGTCCCAAAAATGTCTTACACTAGCAC
1 CGATGCATGTCCCAAACATGTCTTACACTAGCAC
7846838 TCGTCTCAAT
Statistics
Matches: 72, Mismatches: 4, Indels: 10
0.84 0.05 0.12
Matches are distributed among these distances:
44 13 0.18
45 15 0.21
46 44 0.61
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (44 bp):
CGATGCATGTCCCAAACATGTCTTACACTAGCACATCTCGAGGC
Found at i:7846854 original size:46 final size:46
Alignment explanation
Indices: 7846712--7846864 Score: 134
Period size: 46 Copynumber: 3.3 Consensus size: 46
7846702 ATATTTGTAT
* * * *
7846712 CGATGCCATGTCCCAGACATGGTCTTACACT-GAC-ACATCTCGTA-GC
1 CGATG-CATGTCCCAAAAAT-GTCTTACACTAGCCTACATCTC-AAGGC
* * * *
7846758 GGATGCATGTCCCAAACATGTCTTACACTAGCTTACATCTCGAGGC
1 CGATGCATGTCCCAAAAATGTCTTACACTAGCCTACATCTCAAGGC
* * *
7846804 CGATGCATGTCCCAAAAATGTCTTACACTAGCACT-CGTCTCAATGT
1 CGATGCATGTCCCAAAAATGTCTTACACTAGC-CTACATCTCAAGGC
7846850 CGATGCCATGTCCCA
1 CGATG-CATGTCCCA
7846865 GACATGGTCT
Statistics
Matches: 90, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
44 10 0.11
45 15 0.17
46 55 0.61
47 10 0.11
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.25
Consensus pattern (46 bp):
CGATGCATGTCCCAAAAATGTCTTACACTAGCCTACATCTCAAGGC
Found at i:7859924 original size:13 final size:13
Alignment explanation
Indices: 7859908--7859932 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7859898 GATATAATAA
7859908 AATAAAATAAAAT
1 AATAAAATAAAAT
7859921 AATAAAATAAAA
1 AATAAAATAAAA
7859933 GTATTGATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
AATAAAATAAAAT
Found at i:7867639 original size:13 final size:13
Alignment explanation
Indices: 7867621--7867661 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
7867611 GTATCACATT
7867621 TATTTAAGTAATA
1 TATTTAAGTAATA
7867634 TATTT-A-T--TA
1 TATTTAAGTAATA
7867643 TATTTAAGTAATA
1 TATTTAAGTAATA
7867656 TATTTA
1 TATTTA
7867662 TTACTGGAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
9 7 0.29
10 1 0.04
11 2 0.08
12 1 0.04
13 13 0.54
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (13 bp):
TATTTAAGTAATA
Found at i:7867646 original size:22 final size:22
Alignment explanation
Indices: 7867621--7867664 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
7867611 GTATCACATT
7867621 TATTTAAGTAATATATTTATTA
1 TATTTAAGTAATATATTTATTA
7867643 TATTTAAGTAATATATTTATTA
1 TATTTAAGTAATATATTTATTA
7867665 CTGGAGTGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (22 bp):
TATTTAAGTAATATATTTATTA
Found at i:7881582 original size:1 final size:1
Alignment explanation
Indices: 7881576--7881616 Score: 64
Period size: 1 Copynumber: 41.0 Consensus size: 1
7881566 TAAAAGAGAG
**
7881576 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
7881617 TAGGGATGAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
1 38 1.00
ACGTcount: A:0.95, C:0.00, G:0.05, T:0.00
Consensus pattern (1 bp):
A
Found at i:7883200 original size:47 final size:47
Alignment explanation
Indices: 7883147--7883668 Score: 954
Period size: 47 Copynumber: 11.1 Consensus size: 47
7883137 TTAGGATTTT
* *
7883147 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
7883194 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
7883241 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
7883288 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
7883335 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
7883382 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
7883429 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
7883476 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
7883523 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
7883570 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
7883617 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
7883664 ATGTG
1 ATGTG
7883669 AAATATGTAT
Statistics
Matches: 462, Mismatches: 13, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 462 1.00
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:7883704 original size:48 final size:48
Alignment explanation
Indices: 7883640--7883775 Score: 202
Period size: 50 Copynumber: 2.8 Consensus size: 48
7883630 GAACATGCAT
7883640 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
* * *
7883688 ATATGTTGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATGC
*
7883738 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
7883776 GGCGATGTGC
Statistics
Matches: 78, Mismatches: 6, Indels: 8
0.85 0.07 0.09
Matches are distributed among these distances:
47 1 0.01
48 32 0.41
49 4 0.05
50 40 0.51
51 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:7883790 original size:50 final size:50
Alignment explanation
Indices: 7883634--7883791 Score: 191
Period size: 50 Copynumber: 3.2 Consensus size: 50
7883624 GAATATGAAC
*
7883634 ATGCATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
1 ATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
* *
7883684 ATGC--ATATGTTGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGAT
1 ATGCGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGAT
* * *
7883734 AT--GTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGCGAT
1 ATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
*
7883782 GTGCGTATAT
1 ATGCGTATAT
7883792 TGTGACCGAA
Statistics
Matches: 92, Mismatches: 8, Indels: 16
0.79 0.07 0.14
Matches are distributed among these distances:
47 1 0.01
48 37 0.40
49 4 0.04
50 49 0.53
51 1 0.01
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (50 bp):
ATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
Found at i:7884029 original size:37 final size:37
Alignment explanation
Indices: 7883921--7884029 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
7883911 GGAAATATAT
*
7883921 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
7883958 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
7883995 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
7884030 CATCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:7884318 original size:96 final size:96
Alignment explanation
Indices: 7884164--7884354 Score: 364
Period size: 96 Copynumber: 2.0 Consensus size: 96
7884154 TGTGAGCTTC
* *
7884164 ATTTGAACTAAGTCATAAGGTAGTTATGTGATGCATACGAGAGCAATCTATGAGACTATTCCTAT
1 ATTTGAACTAAATCATAAGGTAGTTATGTGATGCATACGAGAGCAATCCATGAGACTATTCCTAT
7884229 GATTATGTGACATCGGATCAGTGTGAGAGGG
66 GATTATGTGACATCGGATCAGTGTGAGAGGG
7884260 ATTTGAACTAAATCATAAGGTAGTTATGTGATGCATACGAGAGCAATCCATGAGACTATTCCTAT
1 ATTTGAACTAAATCATAAGGTAGTTATGTGATGCATACGAGAGCAATCCATGAGACTATTCCTAT
7884325 GATTATGTGACATCGGATCAGTGTGAGAGG
66 GATTATGTGACATCGGATCAGTGTGAGAGG
7884355 TTATGTGAAA
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
96 93 1.00
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (96 bp):
ATTTGAACTAAATCATAAGGTAGTTATGTGATGCATACGAGAGCAATCCATGAGACTATTCCTAT
GATTATGTGACATCGGATCAGTGTGAGAGGG
Found at i:7890980 original size:15 final size:14
Alignment explanation
Indices: 7890943--7890982 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
7890933 CCTAAACCAT
7890943 GAACCCAAAACCTA
1 GAACCCAAAACCTA
*
7890957 GAACCCAAAACTTA
1 GAACCCAAAACCTA
* *
7890971 TAACCCCAAACC
1 GAACCCAAAACC
7890983 CTAAATCTCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.47, C:0.38, G:0.05, T:0.10
Consensus pattern (14 bp):
GAACCCAAAACCTA
Found at i:7903109 original size:15 final size:14
Alignment explanation
Indices: 7903072--7903111 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
7903062 CCTAAACCAT
7903072 GAACCCAAAACCTA
1 GAACCCAAAACCTA
*
7903086 GAACCCAAAACTTA
1 GAACCCAAAACCTA
* *
7903100 TAACCCCAAACC
1 GAACCCAAAACC
7903112 CTAAATCTCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.47, C:0.38, G:0.05, T:0.10
Consensus pattern (14 bp):
GAACCCAAAACCTA
Found at i:7908740 original size:47 final size:47
Alignment explanation
Indices: 7908670--7908979 Score: 251
Period size: 47 Copynumber: 6.6 Consensus size: 47
7908660 GTAAGGTGCT
*
7908670 GATGCCATGTCCCAGACACGGTCTTACACTGGCTCACATCTCAAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGTC
** * *
7908717 GATGCCATGTCCCAGACATGGTCTTACACTGAAT-ATCATCTCGTAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCA-CATCTC-AAGTC
* * * * *
7908765 GATG-CATGTCCCAAACAT-GTCTTGCACTGGCTTACGTCTCAAGTT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGTC
** * *
7908810 GATGCCATGTCCCAGACATGGTCTTACACTCACT-ATCATCTCGAGGC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCA-CATCTCAAGTC
* * * * *
7908857 CAGTG-CATGTCCCAGACAT-GTCTTACACTAGCACTCGTCTCAA-TGC
1 GA-TGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGT-C
* * * * *** *
7908903 TGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATAATGTGGCC
1 -GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-CTCAAGTC
7908952 GATG-CATGTCCCAGACAT-GTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
7908980 AGCCCACACA
Statistics
Matches: 210, Mismatches: 39, Indels: 29
0.76 0.14 0.10
Matches are distributed among these distances:
45 6 0.03
46 61 0.29
47 111 0.53
48 30 0.14
49 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGTC
Found at i:7908849 original size:93 final size:92
Alignment explanation
Indices: 7908670--7908979 Score: 376
Period size: 93 Copynumber: 3.3 Consensus size: 92
7908660 GTAAGGTGCT
* * * *
7908670 GATGCCATGTCCCAGACACGGTCTTACACTGGCTCACATCTCAAGTCGATGCCATGTCCCAGACA
1 GATG-CATGTCCCAGACA-TGTCTTACACTGGCTTACGTCTCAAGTTGATGCCATGTCCCAGACA
*
7908735 TGGTCTTACACTGAATATCATCTCGTAGCC
64 TGGTCTTACACT-ACTATCATCTCGTAGCC
* *
7908765 GATGCATGTCCCAAACATGTCTTGCACTGGCTTACGTCTCAAGTTGATGCCATGTCCCAGACATG
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGTTGATGCCATGTCCCAGACATG
7908830 GTCTTACACTCACTATCATCTCG-AGGCC
66 GTCTTACACT-ACTATCATCTCGTA-GCC
* * * *
7908858 -AGTGCATGTCCCAGACATGTCTTACACTAGCACT-CGTCTCAATGCTGATGCCATGTCCTAGAC
1 GA-TGCATGTCCCAGACATGTCTTACACTGGC-TTACGTCTCAA-GTTGATGCCATGTCCCAGAC
* * *
7908921 ATGGTCTTACACTAGCTCTCATAAT-GTGGCC
63 ATGGTCTTACACTA-CTATCAT-CTCGTAGCC
7908952 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
7908980 AGCCCACACA
Statistics
Matches: 190, Mismatches: 17, Indels: 17
0.85 0.08 0.08
Matches are distributed among these distances:
92 2 0.01
93 102 0.54
94 80 0.42
95 6 0.03
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGTTGATGCCATGTCCCAGACATG
GTCTTACACTACTATCATCTCGTAGCC
Found at i:7908923 original size:140 final size:141
Alignment explanation
Indices: 7908669--7908933 Score: 317
Period size: 140 Copynumber: 1.9 Consensus size: 141
7908659 GGTAAGGTGC
** * *
7908669 TGATGCCATGTCCCAGACACGGTCTTACACTGGCTCACATCTCAAGTCGATGCCATGTCCCAGAC
1 TGATGCCATGTCCCAGACACGGTCTTACACTCACTCACATCTCAAGGCCATGCCATGTCCCAGAC
* *
7908734 ATGGTCTTACACTGAATATCATCTCGTAGCCGATGCATGTCCCAAACAT-GTCTTGCACTGGCTT
66 ATGGTCTTACACTGAATATCATCTCATAGCCGATGCATGTCCCAAACATGGTCTTACACTGGCTT
7908798 ACGTCTCAAGT
131 ACGTCTCAAGT
* *
7908809 TGATGCCATGTCCCAGACATGGTCTTACACTCACT-ATCATCTCGAGGCCAGTG-CATGTCCCAG
1 TGATGCCATGTCCCAGACACGGTCTTACACTCACTCA-CATCTCAAGGCCA-TGCCATGTCCCAG
* * * * * *
7908872 ACAT-GTCTTACACTAGCA-CTCGTCTCA-ATGCTGATGCCATGTCCTAGACATGGTCTTACACT
64 ACATGGTCTTACACT-GAATATCATCTCATA-GCCGATG-CATGTCCCAAACATGGTCTTACACT
7908934 AGCTCTCATA
Statistics
Matches: 105, Mismatches: 14, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
138 1 0.01
139 23 0.22
140 70 0.67
141 11 0.10
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (141 bp):
TGATGCCATGTCCCAGACACGGTCTTACACTCACTCACATCTCAAGGCCATGCCATGTCCCAGAC
ATGGTCTTACACTGAATATCATCTCATAGCCGATGCATGTCCCAAACATGGTCTTACACTGGCTT
ACGTCTCAAGT
Found at i:7909989 original size:26 final size:26
Alignment explanation
Indices: 7909953--7910004 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
7909943 CTTTTAAGAC
7909953 CCCCAATTTTTATTCTCCAGCTATTT
1 CCCCAATTTTTATTCTCCAGCTATTT
* *
7909979 CCCCTATTTTTATTCTCTAGCTATTT
1 CCCCAATTTTTATTCTCCAGCTATTT
7910005 GACACCTCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.17, C:0.29, G:0.04, T:0.50
Consensus pattern (26 bp):
CCCCAATTTTTATTCTCCAGCTATTT
Found at i:7915368 original size:20 final size:20
Alignment explanation
Indices: 7915343--7915392 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
7915333 GGGCTGAGGG
*
7915343 CACGGGCGTGCCCCAATCCA
1 CACGGGCGTGCCCCAAGCCA
7915363 CACGGGCGTGCCCCAAGCCA
1 CACGGGCGTGCCCCAAGCCA
7915383 CACGGGCGTG
1 CACGGGCGTG
7915393 TGACTCACTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.18, C:0.42, G:0.32, T:0.08
Consensus pattern (20 bp):
CACGGGCGTGCCCCAAGCCA
Found at i:7929204 original size:46 final size:48
Alignment explanation
Indices: 7929091--7929322 Score: 223
Period size: 47 Copynumber: 4.9 Consensus size: 48
7929081 CATTACATCA
* *
7929091 CATCTCAAGTCAATGCCATGTCCCAGACATGGTCTTACACTGAC-TAT
1 CATCTCAAGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTAT
* * *
7929138 CATCTCGTAGCCGATG-CATGTCCCAGGCAT-GTCTTACACTGGCTTA-
1 CATCTC-AAGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTAT
* * *
7929184 CGTCTCAAGTCGATGCCATGTCCCAAACATGGTCTTACACT-GATTAT
1 CATCTCAAGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTAT
* *
7929231 CATCT-AGAGGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGC--ACT
1 CATCTCA-A-GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTA-T
* * * *
7929277 CGTCTCAATGTCAATGCCATGTCCTAGACATCGTCTTACACTGGCT
1 CATCTCAA-GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCT
7929323 CTCATAATGT
Statistics
Matches: 151, Mismatches: 21, Indels: 24
0.77 0.11 0.12
Matches are distributed among these distances:
45 8 0.05
46 55 0.36
47 64 0.42
48 24 0.16
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (48 bp):
CATCTCAAGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTAT
Found at i:7929252 original size:93 final size:93
Alignment explanation
Indices: 7929093--7929367 Score: 340
Period size: 93 Copynumber: 2.9 Consensus size: 93
7929083 TTACATCACA
*
7929093 TCTCAAGTCAATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTAGCCGATGCATG
1 TCTCAAGTCAATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTAGTAGCCGATGCATG
* * *
7929158 TCCCAGGCATGTCTTACACTGGC-TTACG
66 TCCCAGACATGTCTTACACTAGCACT-CG
* * *
7929186 TCTCAAGTCGATGCCATGTCCCAAACATGGTCTTACACTGATTATCATCTAG-AGGCCGATGCAT
1 TCTCAAGTCAATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTAGTA-GCCGATGCAT
7929250 GTCCCAGACATGTCTTACACTAGCACTCG
65 GTCCCAGACATGTCTTACACTAGCACTCG
* * * * * * *
7929279 TCTCAATGTCAATGCCATGTCCTAGACATCGTCTTACACTGGCTCTCAT-AATGTGGTCGATGCA
1 TCTCAA-GTCAATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTA-GTAGCCGATGCA
* * *
7929343 TGGCCCATACATGTCTAACACTAGC
64 TGTCCCAGACATGTCTTACACTAGC
7929368 CCACACACAA
Statistics
Matches: 157, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
92 1 0.01
93 89 0.57
94 67 0.43
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (93 bp):
TCTCAAGTCAATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTAGTAGCCGATGCATG
TCCCAGACATGTCTTACACTAGCACTCG
Found at i:7929741 original size:30 final size:30
Alignment explanation
Indices: 7929701--7929757 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
7929691 AATTCACATA
* * *
7929701 TTTGGTAAAATGACCATTTTGCCCCTAGAC
1 TTTGGCAAAATAACCATTTTACCCCTAGAC
7929731 TTTGGCAAAATAACCATTTTACCCCTA
1 TTTGGCAAAATAACCATTTTACCCCTA
7929758 TGCTCGAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (30 bp):
TTTGGCAAAATAACCATTTTACCCCTAGAC
Found at i:7932711 original size:26 final size:26
Alignment explanation
Indices: 7932681--7932757 Score: 100
Period size: 26 Copynumber: 3.0 Consensus size: 26
7932671 GCCAGCACAC
*
7932681 TAATATCGCAGCAAAGCTGCCAGTAA
1 TAATATCGCAACAAAGCTGCCAGTAA
* *
7932707 TAATATTGCAACAAAGCTGGCAGTAA
1 TAATATCGCAACAAAGCTGCCAGTAA
* * *
7932733 TAGTAACGCAACAAAGCTGCTAGTA
1 TAATATCGCAACAAAGCTGCCAGTA
7932758 TCAGTATATG
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.21
Consensus pattern (26 bp):
TAATATCGCAACAAAGCTGCCAGTAA
Found at i:7935265 original size:23 final size:23
Alignment explanation
Indices: 7935235--7935279 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
7935225 TCATTGGGTT
7935235 TGGATCACTTGGATAGCTCATTA
1 TGGATCACTTGGATAGCTCATTA
7935258 TGGATCACTTGGATAGCTCATT
1 TGGATCACTTGGATAGCTCATT
7935280 TCCACACATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.36
Consensus pattern (23 bp):
TGGATCACTTGGATAGCTCATTA
Found at i:7936891 original size:31 final size:31
Alignment explanation
Indices: 7936853--7936915 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
7936843 GTCAAACAAG
*
7936853 CTTTTCTTTCCCTTTCATATTGCTGGTGAAA
1 CTTTTCTTTCCCTTTCATATTGCTCGTGAAA
7936884 CTTTTCTTTCCCTTTCATATTGCTCGTGAAA
1 CTTTTCTTTCCCTTTCATATTGCTCGTGAAA
7936915 C
1 C
7936916 CTCCCAAGGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.16, C:0.25, G:0.11, T:0.48
Consensus pattern (31 bp):
CTTTTCTTTCCCTTTCATATTGCTCGTGAAA
Found at i:7941553 original size:28 final size:28
Alignment explanation
Indices: 7941522--7941592 Score: 67
Period size: 28 Copynumber: 2.5 Consensus size: 28
7941512 GAGTCCATAG
*
7941522 ATATATTTAATTAAT-ATTTA-TGATTTAA
1 ATATATTTAATTAATGA-ATAGTGATTT-A
*
7941550 ATATAGTATAA-TAATGAATAGTGATTTA
1 ATATA-TTTAATTAATGAATAGTGATTTA
*
7941578 ATAGATTTAATTAAT
1 ATATATTTAATTAAT
7941593 TGGTAAGTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
27 4 0.11
28 20 0.57
29 11 0.31
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.46
Consensus pattern (28 bp):
ATATATTTAATTAATGAATAGTGATTTA
Found at i:7959786 original size:27 final size:26
Alignment explanation
Indices: 7959730--7959786 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 26
7959720 TGTTACTGAG
* *
7959730 ATGGGCTAGACCCAATTGATTCTGTT
1 ATGGGCTAGACCCAAATGATTCTGTA
7959756 ATGGGCTATGACCCAAATGATAT-TGTA
1 ATGGGCTA-GACCCAAATGAT-TCTGTA
7959783 ATGG
1 ATGG
7959787 CCTTTGGCCC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
26 8 0.30
27 18 0.67
28 1 0.04
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.32
Consensus pattern (26 bp):
ATGGGCTAGACCCAAATGATTCTGTA
Found at i:7962628 original size:35 final size:35
Alignment explanation
Indices: 7962589--7962658 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
7962579 TGTGAGGTAA
7962589 GTTATTTGAACTTGGGTATCAATGATAGTTTCACT
1 GTTATTTGAACTTGGGTATCAATGATAGTTTCACT
7962624 GTTATTTGAACTTGGGTATCAATGATAGTTTCACT
1 GTTATTTGAACTTGGGTATCAATGATAGTTTCACT
7962659 AACACTTTAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.26, C:0.11, G:0.20, T:0.43
Consensus pattern (35 bp):
GTTATTTGAACTTGGGTATCAATGATAGTTTCACT
Found at i:7963405 original size:3 final size:3
Alignment explanation
Indices: 7963395--7963430 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
7963385 CCACTTTATT
7963395 ATA A-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
7963431 AAGCTACCTA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:7968100 original size:26 final size:26
Alignment explanation
Indices: 7968063--7968146 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
7968053 TGATACAAAT
* *
7968063 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
7968089 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
7968115 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
7968141 TGATAA
1 TGATAA
7968147 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:7977395 original size:26 final size:26
Alignment explanation
Indices: 7977366--7977475 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
7977356 TGATACAAAT
7977366 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
7977392 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
7977418 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
7977444 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
7977470 TGATAA
1 TGATAA
7977476 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:7978405 original size:207 final size:207
Alignment explanation
Indices: 7978044--7978456 Score: 799
Period size: 207 Copynumber: 2.0 Consensus size: 207
7978034 GGACAGCAGT
*
7978044 AGTAACGTGATTTTGGAAAATCACCATAAATTGTGGGAGATGAATTAGAAGCTGAATAAATTATG
1 AGTAACGTGACTTTGGAAAATCACCATAAATTGTGGGAGATGAATTAGAAGCTGAATAAATTATG
*
7978109 TAATTAAATCTTATTGAGTCTAGTTTCTAATGAAATAAACAAGAACATATTTTGAATTCTGTACA
66 TAATTAAAGCTTATTGAGTCTAGTTTCTAATGAAATAAACAAGAACATATTTTGAATTCTGTACA
*
7978174 ATGAGAAATTTGATTCGTAATGAAGAGTGGTCAGATTAGTCAAACAGTGAAACATGGGAAACTTT
131 ATGAGAAATTTGATTCGAAATGAAGAGTGGTCAGATTAGTCAAACAGTGAAACATGGGAAACTTT
7978239 GAGAAAAATCTC
196 GAGAAAAATCTC
7978251 AGTAACGTGACTTTGGAAAATCACCATAAATTGTGGGAGATGAATTAGAAGCTGAATAAATTATG
1 AGTAACGTGACTTTGGAAAATCACCATAAATTGTGGGAGATGAATTAGAAGCTGAATAAATTATG
7978316 TAATTAAAGCTTATTGAGTCTAGTTTCTAATGAAATAAACAAGAACATATTTTGAATTCTGTACA
66 TAATTAAAGCTTATTGAGTCTAGTTTCTAATGAAATAAACAAGAACATATTTTGAATTCTGTACA
7978381 ATGAGAAATTTGATTCGAAATGAAGAGTGGTCAGATTAGTCAAACAGTGAAACATGGGAAACTTT
131 ATGAGAAATTTGATTCGAAATGAAGAGTGGTCAGATTAGTCAAACAGTGAAACATGGGAAACTTT
7978446 GAGAAAAATCT
196 GAGAAAAATCT
7978457 GGTATTGATT
Statistics
Matches: 203, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
207 203 1.00
ACGTcount: A:0.40, C:0.10, G:0.20, T:0.30
Consensus pattern (207 bp):
AGTAACGTGACTTTGGAAAATCACCATAAATTGTGGGAGATGAATTAGAAGCTGAATAAATTATG
TAATTAAAGCTTATTGAGTCTAGTTTCTAATGAAATAAACAAGAACATATTTTGAATTCTGTACA
ATGAGAAATTTGATTCGAAATGAAGAGTGGTCAGATTAGTCAAACAGTGAAACATGGGAAACTTT
GAGAAAAATCTC
Found at i:7980353 original size:40 final size:40
Alignment explanation
Indices: 7980309--7980470 Score: 216
Period size: 40 Copynumber: 4.0 Consensus size: 40
7980299 CCAGCATGTT
* * * *
7980309 TGCTCTTCGAGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
7980349 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
7980389 CGCTCCTCGGGACTTAGCCCAGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
7980429 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
7980469 TG
1 TG
7980471 TAACACCCCG
Statistics
Matches: 104, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:7985930 original size:28 final size:28
Alignment explanation
Indices: 7985867--7985964 Score: 162
Period size: 28 Copynumber: 3.5 Consensus size: 28
7985857 ATATTAAGTC
* *
7985867 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
7985894 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
7985922 CGCACACTTAGTGCTACATAATCAAAAT
1 CGCACACTTAGTGCTACATAATCAAACT
7985950 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
7985965 GTACAATTTA
Statistics
Matches: 67, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
27 21 0.31
28 46 0.69
ACGTcount: A:0.34, C:0.29, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:7987641 original size:40 final size:40
Alignment explanation
Indices: 7987581--7988417 Score: 1404
Period size: 40 Copynumber: 20.9 Consensus size: 40
7987571 GGTTGTCACA
*
7987581 ACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGC
1 ACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGC
*
7987621 ACGAATGCTCTTCGGAACTTAGCCCGGATATATCACTAGC
1 ACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGC
* *
7987661 ACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGC
1 ACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGC
*
7987701 ACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGC
1 ACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGC
* *
7987741 ACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGC
1 ACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGC
*
7987781 ACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGC
1 ACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGC
* *
7987821 ACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGC
1 ACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGC
*
7987861 ACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGC
1 ACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGC
* *
7987901 ACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGC
1 ACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGC
*
7987941 ACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGC
1 ACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGC
* *
7987981 ACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGC
1 ACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGC
*
7988021 ACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGC
1 ACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGC
* *
7988061 ACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGC
1 ACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGC
*
7988101 ACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGC
1 ACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGC
* *
7988141 ACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGC
1 ACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGC
*
7988181 ACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGC
1 ACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGC
* *
7988221 ACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGC
1 ACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGC
*
7988261 ACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGC
1 ACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGC
* *
7988301 ACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGC
1 ACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGC
*
7988341 ACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGC
1 ACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGC
*
7988381 ACGAATGCTCTTCGGGACTTAGCCCAGATATATCACT
1 ACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
7988418 CTCAATTCTC
Statistics
Matches: 741, Mismatches: 56, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 741 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (40 bp):
ACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGC
Found at i:7987721 original size:80 final size:80
Alignment explanation
Indices: 7987581--7988417 Score: 1602
Period size: 80 Copynumber: 10.5 Consensus size: 80
7987571 GGTTGTCACA
* * * * *
7987581 ACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCC
1 ACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
7987646 GGATATATCACTAGC
66 GGATATATCACTAGC
7987661 ACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
1 ACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
7987726 GGATATATCACTAGC
66 GGATATATCACTAGC
7987741 ACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
1 ACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
7987806 GGATATATCACTAGC
66 GGATATATCACTAGC
7987821 ACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
1 ACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
7987886 GGATATATCACTAGC
66 GGATATATCACTAGC
7987901 ACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
1 ACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
7987966 GGATATATCACTAGC
66 GGATATATCACTAGC
7987981 ACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
1 ACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
7988046 GGATATATCACTAGC
66 GGATATATCACTAGC
7988061 ACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
1 ACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
7988126 GGATATATCACTAGC
66 GGATATATCACTAGC
7988141 ACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
1 ACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
7988206 GGATATATCACTAGC
66 GGATATATCACTAGC
7988221 ACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
1 ACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
7988286 GGATATATCACTAGC
66 GGATATATCACTAGC
7988301 ACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
1 ACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
7988366 GGATATATCACTAGC
66 GGATATATCACTAGC
* * *
7988381 ACGAATGCTCTTCGGGACTTAGCCCAGATATATCACT
1 ACGAATGCTCTTCGGAACTTAGCCCGGATACATCACT
7988418 CTCAATTCTC
Statistics
Matches: 749, Mismatches: 8, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 749 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (80 bp):
ACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGACTTAGCCC
GGATATATCACTAGC
Found at i:7989682 original size:37 final size:37
Alignment explanation
Indices: 7989632--7989711 Score: 115
Period size: 37 Copynumber: 2.2 Consensus size: 37
7989622 CTTATTACGA
* * *
7989632 AGTCTTACCCGGACATAATCTCCACACGAAGTTATCG
1 AGTCTTACCCGGACAAAATCCCCACACGAAGTCATCG
*
7989669 AGTCTTACCCGGACAAAATCCCCACACGTAGTCATCG
1 AGTCTTACCCGGACAAAATCCCCACACGAAGTCATCG
*
7989706 GGTCTT
1 AGTCTT
7989712 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (37 bp):
AGTCTTACCCGGACAAAATCCCCACACGAAGTCATCG
Found at i:7989908 original size:47 final size:47
Alignment explanation
Indices: 7989830--7990150 Score: 482
Period size: 47 Copynumber: 6.7 Consensus size: 47
7989820 CCCTTCGGGA
* * * * *
7989830 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
7989877 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
7989924 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
7989973 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
7990020 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
7990069 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
7990116 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
7990151 AGAATCCTAA
Statistics
Matches: 253, Mismatches: 16, Indels: 10
0.91 0.06 0.04
Matches are distributed among these distances:
46 1 0.00
47 160 0.63
49 92 0.36
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:7989992 original size:96 final size:96
Alignment explanation
Indices: 7989830--7990129 Score: 514
Period size: 96 Copynumber: 3.1 Consensus size: 96
7989820 CCCTTCGGGA
* * * * * * *
7989830 CTTATCACAT-T-TATACACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATAC
7989893 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
7989924 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATAC
7989989 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
7990020 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATAC
7990085 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
7990116 CTTATCTCATATAT
1 CTTATCACATATAT
7990130 GCATGTTCAC
Statistics
Matches: 196, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
94 10 0.05
95 1 0.01
96 185 0.94
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:7990088 original size:143 final size:142
Alignment explanation
Indices: 7989830--7990150 Score: 493
Period size: 143 Copynumber: 2.2 Consensus size: 142
7989820 CCCTTCGGGA
* * * *
7989830 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
*
7989895 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACA
66 TTTCACATTCACCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCACCACA
7989960 TCGGCCATTAGGC
130 TCGGCCATTAGGC
* * *
7989973 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCAC--ATATATAC
*
7990038 ACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC-ATATATACACTTTCACATTCATCAC
64 ACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCACCAC
7990102 ATCGGCCATTAGGC
129 ATCGGCCATTAGGC
* *
7990116 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATCCATCACAT
7990151 AGAATCCTAA
Statistics
Matches: 163, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
142 1 0.01
143 116 0.71
145 46 0.28
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (142 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCACCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCACCACAT
CGGCCATTAGGC
Found at i:7992345 original size:56 final size:56
Alignment explanation
Indices: 7992278--7992394 Score: 225
Period size: 56 Copynumber: 2.1 Consensus size: 56
7992268 TATTAGTTTA
7992278 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
7992334 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
7992390 TTGCC
1 TTGCC
7992395 TATCATCCCT
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 60 1.00
ACGTcount: A:0.22, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:7995269 original size:28 final size:28
Alignment explanation
Indices: 7995206--7995303 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
7995196 ATATTAAGTC
*
7995206 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
7995233 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
7995261 CGCACACTTAGTGCTGTACAAATTAAACC
1 CGCACACTTAGTGCTATA-TAATCAAACT
7995290 CGCACACTTAGTGC
1 CGCACACTTAGTGC
7995304 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 21 0.33
29 21 0.33
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:8002756 original size:25 final size:27
Alignment explanation
Indices: 8002707--8002755 Score: 77
Period size: 24 Copynumber: 1.9 Consensus size: 27
8002697 AAAGAAATAA
8002707 CTAAAATTGATAATTAAAAATAAAATT
1 CTAAAATTGATAATTAAAAATAAAATT
8002734 CTAAAA-T-ATAA-TAAAAATAAAA
1 CTAAAATTGATAATTAAAAATAAAA
8002756 AGTAGTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 11 0.50
25 4 0.18
26 1 0.05
27 6 0.27
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (27 bp):
CTAAAATTGATAATTAAAAATAAAATT
Found at i:8022486 original size:46 final size:46
Alignment explanation
Indices: 8022433--8022605 Score: 203
Period size: 46 Copynumber: 3.7 Consensus size: 46
8022423 TTGAGCATCT
8022433 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
1 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* * *
8022479 GAACTCGTTGAGTTGAGTCCGAGTT---TGA-GAGATG-TAACTAGGCATCC
1 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G--TCC
* * *
8022526 GAGCTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
1 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
8022572 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
8022606 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 10, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
42 3 0.03
43 7 0.07
45 1 0.01
46 59 0.56
47 26 0.25
48 1 0.01
50 6 0.06
51 3 0.03
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
Found at i:8022586 original size:93 final size:93
Alignment explanation
Indices: 8022427--8022596 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 93
8022417 GGATGGTTGA
* * * *
8022427 GCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAGCTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
8022492 TGAGTCCGAGTTTGAGAGATGTAACTAG
66 TGAGTCCGAGTTTGAGAGATGTAACTAG
*
8022520 GCATCCGAGCTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAGCTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
8022585 TGAGTCCGAGTT
66 TGAGTCCGAGTT
8022597 CACTTATGGG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAGCTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTTGAGAGATGTAACTAG
Found at i:8025579 original size:15 final size:15
Alignment explanation
Indices: 8025559--8025614 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
8025549 GTATATTGGG
8025559 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
8025574 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
8025589 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
8025604 TTTCTTTATTC
1 TTTCTTTATTC
8025615 GGTTTCCTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 2 0.05
15 33 0.89
16 2 0.05
ACGTcount: A:0.12, C:0.16, G:0.11, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:8028065 original size:46 final size:46
Alignment explanation
Indices: 8028015--8028190 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 46
8028005 TGGTTGAGCA
*
8028015 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *** * * ** *
8028061 TCCGAACTTGTTGACTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGTA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAATG
* *
8028108 TCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
*
8028154 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
8028191 GCGGGTTAAA
Statistics
Matches: 100, Mismatches: 27, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
46 68 0.68
47 32 0.32
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:8028173 original size:93 final size:93
Alignment explanation
Indices: 8028014--8028182 Score: 275
Period size: 93 Copynumber: 1.8 Consensus size: 93
8028004 ATGGTTGAGC
* * * * *
8028014 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTTGTTGACTTG
1 ATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGACTTG
8028079 AGTCCGAGTTCGAGAGATGTAACTAGGT
66 AGTCCGAGTTCGAGAGATGTAACTAGGT
* *
8028107 ATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGTTG
1 ATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGACTTG
8028172 AGTCCGAGTTC
66 AGTCCGAGTTC
8028183 ACTTATGGGC
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
ATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGACTTG
AGTCCGAGTTCGAGAGATGTAACTAGGT
Found at i:8031257 original size:21 final size:20
Alignment explanation
Indices: 8031233--8031272 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
8031223 ACTTGTTTAA
8031233 CTATCAACAACCATTCAAAAT
1 CTATCAACAACCA-TCAAAAT
* *
8031254 CTATCATCAATCATCAAAA
1 CTATCAACAACCATCAAAA
8031273 CTCATACATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.47, C:0.28, G:0.00, T:0.25
Consensus pattern (20 bp):
CTATCAACAACCATCAAAAT
Found at i:8034317 original size:33 final size:34
Alignment explanation
Indices: 8034271--8034345 Score: 91
Period size: 33 Copynumber: 2.2 Consensus size: 34
8034261 CTGATACTAT
* *
8034271 AATGGGCTTAGGCCCCCG-CTGATACTATTACTG-
1 AATGGGCTCAGG-CCCAGACTGATACTATTACTGA
* *
8034304 AATGGGCTCAGGCCCAGACTGCTACTGTTACTGA
1 AATGGGCTCAGGCCCAGACTGATACTATTACTGA
8034338 AATGGGCT
1 AATGGGCT
8034346 AAAAGCCCTA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
32 4 0.11
33 24 0.67
34 8 0.22
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.25
Consensus pattern (34 bp):
AATGGGCTCAGGCCCAGACTGATACTATTACTGA
Found at i:8034610 original size:17 final size:18
Alignment explanation
Indices: 8034588--8034622 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
8034578 AGGCCTCTTG
8034588 GGTA-TTTATTTTAATTT
1 GGTATTTTATTTTAATTT
*
8034605 GGTATTTTATTTTTATTT
1 GGTATTTTATTTTAATTT
8034623 TTCATTGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.20, C:0.00, G:0.11, T:0.69
Consensus pattern (18 bp):
GGTATTTTATTTTAATTT
Found at i:8035264 original size:5 final size:6
Alignment explanation
Indices: 8035247--8035271 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
8035237 AAATTTGAAC
8035247 TATTTT TATTTT TATTTT TATTTT T
1 TATTTT TATTTT TATTTT TATTTT T
8035272 TGGATTTGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TATTTT
Found at i:8066495 original size:15 final size:15
Alignment explanation
Indices: 8066469--8066502 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
8066459 ATGTAATTTT
8066469 TAAAATTTTAAAGG-
1 TAAAATTTTAAAGGA
8066483 TAAAATATTTAAAGGA
1 TAAAAT-TTTAAAGGA
8066499 TAAA
1 TAAA
8066503 TTTAAAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.33
15 8 0.44
16 4 0.22
ACGTcount: A:0.56, C:0.00, G:0.12, T:0.32
Consensus pattern (15 bp):
TAAAATTTTAAAGGA
Found at i:8067875 original size:16 final size:18
Alignment explanation
Indices: 8067854--8067891 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
8067844 AATGGTATAT
*
8067854 AAATAT-ATATTA-TACA
1 AAATATCATAATAGTACA
8067870 AAATATCATAATAGTACA
1 AAATATCATAATAGTACA
8067888 AAAT
1 AAAT
8067892 CAAAATTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 6 0.32
17 5 0.26
18 8 0.42
ACGTcount: A:0.58, C:0.08, G:0.03, T:0.32
Consensus pattern (18 bp):
AAATATCATAATAGTACA
Found at i:8072135 original size:16 final size:16
Alignment explanation
Indices: 8072114--8072599 Score: 972
Period size: 16 Copynumber: 30.4 Consensus size: 16
8072104 TTTGGTTCGC
8072114 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8072130 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8072146 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8072162 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8072178 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8072194 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8072210 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8072226 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8072242 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8072258 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8072274 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8072290 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8072306 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8072322 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8072338 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8072354 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8072370 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8072386 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8072402 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8072418 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8072434 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8072450 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8072466 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8072482 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8072498 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8072514 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8072530 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8072546 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8072562 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8072578 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
8072594 TGTATT
1 TGTATT
8072600 AAAATGCCAA
Statistics
Matches: 470, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 470 1.00
ACGTcount: A:0.25, C:0.00, G:0.37, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:8079119 original size:12 final size:12
Alignment explanation
Indices: 8079102--8079126 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8079092 CTGGTCTGGA
8079102 AGCTGCTTCAAC
1 AGCTGCTTCAAC
8079114 AGCTGCTTCAAC
1 AGCTGCTTCAAC
8079126 A
1 A
8079127 ATGAGGGATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.24
Consensus pattern (12 bp):
AGCTGCTTCAAC
Found at i:8079290 original size:22 final size:21
Alignment explanation
Indices: 8079227--8079290 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
8079217 TTGCTTCCTT
*
8079227 AACACGCTCCAGGATTTCTTG
1 AACACGCTCCAGGATTTCTTC
* * *
8079248 TACATGCTTCAGGATTTCTTC
1 AACACGCTCCAGGATTTCTTC
*
8079269 AACGCGCTCCAGGATTTTCTTC
1 AACACGCTCCAGGA-TTTCTTC
8079291 TGCAGTTCAG
Statistics
Matches: 34, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
21 27 0.79
22 7 0.21
ACGTcount: A:0.20, C:0.28, G:0.17, T:0.34
Consensus pattern (21 bp):
AACACGCTCCAGGATTTCTTC
Found at i:8085823 original size:20 final size:20
Alignment explanation
Indices: 8085798--8085835 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8085788 CACATGGGAT
8085798 GAATGTCT-TCGATGGGACGA
1 GAATGTCTGT-GATGGGACGA
8085818 GAATGTCTGTGATGGGAC
1 GAATGTCTGTGATGGGAC
8085836 AGATATTGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 16 0.94
21 1 0.06
ACGTcount: A:0.24, C:0.13, G:0.37, T:0.26
Consensus pattern (20 bp):
GAATGTCTGTGATGGGACGA
Found at i:8088525 original size:27 final size:28
Alignment explanation
Indices: 8088488--8088627 Score: 175
Period size: 27 Copynumber: 5.2 Consensus size: 28
8088478 AGCATGGCTG
* *
8088488 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
8088514 CCAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGATACAGATATAT-GTGGCAGAGCCA
8088542 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
8088569 CCAGAT-CAGATATTTGTGGCAAAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
8088596 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
8088623 CCAGA
1 CCAGA
8088628 ACGCTTCCTC
Statistics
Matches: 105, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
26 5 0.05
27 83 0.79
28 17 0.16
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.18
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:8090276 original size:26 final size:26
Alignment explanation
Indices: 8090247--8091136 Score: 1719
Period size: 26 Copynumber: 34.2 Consensus size: 26
8090237 CATGAAATTC
8090247 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8090273 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8090299 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8090325 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8090351 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8090377 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8090403 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8090429 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8090455 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8090481 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8090507 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8090533 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8090559 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8090585 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8090611 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8090637 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8090663 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8090689 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8090715 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8090741 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8090767 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8090793 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8090819 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8090845 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8090871 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8090897 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8090923 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8090949 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8090975 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8091001 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
8091027 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
8091053 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
8091079 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
8091105 TTATCAT-AGAACATTTACCTAACCTA
1 TTATCATGA-AACATTTACCTAACCCA
8091131 TTATCA
1 TTATCA
8091137 ATTTGTATCA
Statistics
Matches: 860, Mismatches: 3, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
26 860 1.00
ACGTcount: A:0.38, C:0.27, G:0.04, T:0.31
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:8093597 original size:46 final size:45
Alignment explanation
Indices: 8093544--8093946 Score: 214
Period size: 48 Copynumber: 8.5 Consensus size: 45
8093534 ATTGTGTGCT
*
8093544 AGTGTAAGACATGTCTGGGACATGCATCGGCCATATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCATA-GATGAGAGCC
* *
8093590 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTAAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-T-AGATGAGAGCC
* * *
8093638 AGTGTAAGACATGTTTGAGACATGCATCGGCCTTGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAT-AGATG-AGAGCC
* *
8093684 AGTGTAAGACATGTCTGGGACATGCATCGG-C-TACGA-GATATGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCATA-GATGAGA-GCC
* ** * * * * *
8093728 AGTGTAAGACCATGCCTGAAACATGGCATCGGCACGTATA-AAGCTGTC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CATAGATGAG-AGCC
* * * * *
8093776 AGTTTAAGACCATATCTGAGACATGGCATCGGCACGGATATG-TAAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-C--ATA-GATGAGAGCC
* * * *
8093826 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCC-TCGATTTCGATAGTC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCATAGA--T-GAGAGCC
* *
8093875 AGTGTAAGACCATGTCTGGGACATGGCATC-GAC-TTGATGGATGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCATAGAT-GA-GAGCC
* *
8093922 AGTGCAAGAGCATGTCTAGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
8093947 GCATTGGCAT
Statistics
Matches: 287, Mismatches: 46, Indels: 48
0.75 0.12 0.13
Matches are distributed among these distances:
42 1 0.00
43 3 0.01
44 14 0.05
45 13 0.05
46 64 0.22
47 54 0.19
48 67 0.23
49 36 0.13
50 32 0.11
51 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCATAGATGAGAGCC
Found at i:8093642 original size:48 final size:48
Alignment explanation
Indices: 8093541--8093958 Score: 246
Period size: 46 Copynumber: 8.8 Consensus size: 48
8093531 GATATTGTGT
**
8093541 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-TATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTAAGATGAGA
* *
8093587 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGATGAGA
* * * *
8093635 GCTAGTGTAAGA-CATGTTTGAGACAT-GCATCGGCCTTGAGATGTA-A
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGATG-AGA
* * *
8093681 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC--TACGA-GATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGATGAGA
* ** * *
8093724 TG-TCAGTGTAAGACCATGCCTGAAACATGGCATCGGC---ACGTAT-AAA
1 -GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAG-ATGAGA
* * * *** *
8093770 GCTGTCAGTTTAAGACCATATCTGAGACATGGCATCGGCACGGATATGTAAGA
1 GC--T-AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGATG--AGA
* * ** ** *
8093823 GCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTCGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGAT-GAGA
*
8093872 G-TCAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TT--GATGGATGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGAT-GA-GA
* * * * *
8093919 GCCAGTGCAAGAGCATGTCTAGGACATGGCATTGGCATTA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTA
8093959 TACCCTATGT
Statistics
Matches: 296, Mismatches: 50, Indels: 49
0.75 0.13 0.12
Matches are distributed among these distances:
42 1 0.00
43 2 0.01
44 13 0.04
45 15 0.05
46 71 0.24
47 59 0.20
48 60 0.20
49 34 0.11
50 35 0.12
51 2 0.01
53 4 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGATGAGA
Found at i:8102238 original size:15 final size:14
Alignment explanation
Indices: 8102207--8102267 Score: 68
Period size: 14 Copynumber: 4.3 Consensus size: 14
8102197 ATGGTAAGAG
8102207 TGGTATGAACGAAA
1 TGGTATGAACGAAA
*
8102221 TGGTATGAATGAAAA
1 TGGTATGAACG-AAA
* *
8102236 TGGTATGAAGGAAG
1 TGGTATGAACGAAA
* *
8102250 GGGTATGAACGAAT
1 TGGTATGAACGAAA
8102264 TGGT
1 TGGT
8102268 CGGTTTAGGT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
14 26 0.67
15 13 0.33
ACGTcount: A:0.38, C:0.03, G:0.34, T:0.25
Consensus pattern (14 bp):
TGGTATGAACGAAA
Found at i:8104808 original size:28 final size:29
Alignment explanation
Indices: 8104768--8104822 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
8104758 CACAAGCGAT
*
8104768 GACATGGGCGTGT-CTAGGCCGTGTGAGG
1 GACACGGGCGTGTGCTAGGCCGTGTGAGG
* *
8104796 GACACGGGCGTGTGTTCGGCCGTGTGA
1 GACACGGGCGTGTGCTAGGCCGTGTGA
8104823 AAACCCCTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.13, C:0.20, G:0.45, T:0.22
Consensus pattern (29 bp):
GACACGGGCGTGTGCTAGGCCGTGTGAGG
Found at i:8104905 original size:20 final size:20
Alignment explanation
Indices: 8104880--8104951 Score: 108
Period size: 20 Copynumber: 3.6 Consensus size: 20
8104870 GGGGTAAGGG
*
8104880 ACACGGACGTGTCCCAATGT
1 ACACGGGCGTGTCCCAATGT
8104900 ACACGGGCGTGTCCCAATGT
1 ACACGGGCGTGTCCCAATGT
* * *
8104920 ACACGGGTGTGTCCTAATGC
1 ACACGGGCGTGTCCCAATGT
8104940 ACACGGGCGTGT
1 ACACGGGCGTGT
8104952 GCATTGCCTC
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.21, C:0.28, G:0.31, T:0.21
Consensus pattern (20 bp):
ACACGGGCGTGTCCCAATGT
Found at i:8109306 original size:21 final size:21
Alignment explanation
Indices: 8109273--8109319 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
8109263 TAAGATAGAC
8109273 CACAAGGCCGTGT-GAGTGGGT
1 CACAAGGCCGTGTGGA-TGGGT
* *
8109294 CACATGGCTGTGTGGATGGGT
1 CACAAGGCCGTGTGGATGGGT
8109315 CACAA
1 CACAA
8109320 TGTAACAGCC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 20 0.91
22 2 0.09
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (21 bp):
CACAAGGCCGTGTGGATGGGT
Found at i:8113508 original size:55 final size:53
Alignment explanation
Indices: 8113408--8113582 Score: 210
Period size: 55 Copynumber: 3.2 Consensus size: 53
8113398 ATGTCTTAAC
* *
8113408 ATGGTCTTACCTGGTATCCTTGCCTTAT-GAACTCACCAATGCCATGCCTTGGA
1 ATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAATGCCATGCCTTGGA
* * *
8113461 ATGGTCTTACATGGGACCTTTTCCTTATAGTAACTCATCAATGCCATGTCTT-GA
1 ATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCATCAATGCCATGCCTTGGA
* * * *
8113515 CATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGC
1 -ATGGTCTTACATG-GTACCTTGCCTTATAGAACTCATCAATGCCATGCCTTGGA
8113570 ATGGTCTTACATG
1 ATGGTCTTACATG
8113583 ATATCCTTAT
Statistics
Matches: 104, Mismatches: 12, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
52 2 0.02
53 22 0.21
54 35 0.34
55 43 0.41
56 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (53 bp):
ATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAATGCCATGCCTTGGA
Found at i:8113511 original size:108 final size:109
Alignment explanation
Indices: 8113359--8113582 Score: 308
Period size: 108 Copynumber: 2.1 Consensus size: 109
8113349 ACTCTTTGGA
* * * * * * *
8113359 TTACTTGGGAACCTTTTCCTTTTTGAACTTACCATTGCCATGTCTTAACATGGTCTTACCTGGTA
1 TTACATGGGAACCTTTTCCTTATAGAACTCACCAATGCCATGTCTTAACATGGTCTTACATGATA
8113424 TCCTTGCCTTAT-GAACTCACCAATGCCATGCCTTGGAATGGTC
66 TCCTTGCCTTATAGAACTCACCAATGCCATGCCTTGGAATGGTC
* *
8113467 TTACATGGG-ACCTTTTCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGAT
1 TTACATGGGAACCTTTTCCTTATAG-AACTCACCAATGCCATGTCTTAACATGGTCTTACATGAT
* * * *
8113531 TTCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTC
65 ATCCTTGCCTTATAGAACTCACCAATGCCATGCCTTGGAATGGTC
8113576 TTACATG
1 TTACATG
8113583 ATATCCTTAT
Statistics
Matches: 101, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
107 13 0.13
108 53 0.52
109 35 0.35
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.37
Consensus pattern (109 bp):
TTACATGGGAACCTTTTCCTTATAGAACTCACCAATGCCATGTCTTAACATGGTCTTACATGATA
TCCTTGCCTTATAGAACTCACCAATGCCATGCCTTGGAATGGTC
Found at i:8113577 original size:54 final size:54
Alignment explanation
Indices: 8113383--8113590 Score: 233
Period size: 54 Copynumber: 3.9 Consensus size: 54
8113373 TTTCCTTTTT
* * * * * *
8113383 GAACTTACCATTGCCATGTCTTAACATGGTCTTACCTGGTATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
** *
8113436 GAACTCACCAATGCCATGCCTTGGA-ATGGTCTTACATGGGA-CCTTTTCCTTATA
1 GAACTCACCAATGCCATGCCTT-GACATGGTCTTACATGATATCC-TTGCCTTATA
* * *
8113490 GTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* * *
8113545 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTT
8113591 ATCTTACCAA
Statistics
Matches: 132, Mismatches: 17, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
52 2 0.02
53 41 0.31
54 45 0.34
55 42 0.32
56 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
Found at i:8113622 original size:47 final size:47
Alignment explanation
Indices: 8113569--8113690 Score: 181
Period size: 47 Copynumber: 2.6 Consensus size: 47
8113559 CATGCCTTGG
* * *
8113569 CATGGTCTTACATGATATCCTTATCTTACCAAATGCTATGCTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGCTCCAAA
* * * *
8113616 TATGGTCTTACATGGTACCCTTGTCCTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGCTCCAAA
8113663 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
8113691 GAGCCAATGC
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 65 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.35
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGCTCCAAA
Found at i:8116712 original size:19 final size:19
Alignment explanation
Indices: 8116690--8116751 Score: 65
Period size: 19 Copynumber: 3.2 Consensus size: 19
8116680 TTCAATCCAC
8116690 CATTTCATATTCCATTTCA
1 CATTTCATATTCCATTTCA
*
8116709 CATTTCATCTTCC-TTAATACA
1 CATTTCATATTCCATT--T-CA
8116730 CATTTCATATT-CATTTCTA
1 CATTTCATATTCCATTTC-A
8116749 CAT
1 CAT
8116752 ATTTTTCCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
18 3 0.08
19 17 0.47
20 2 0.06
21 14 0.39
ACGTcount: A:0.27, C:0.26, G:0.00, T:0.47
Consensus pattern (19 bp):
CATTTCATATTCCATTTCA
Found at i:8116750 original size:21 final size:20
Alignment explanation
Indices: 8116690--8116755 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 20
8116680 TTCAATCCAC
8116690 CATTTCATATTCCA-TTT-CA
1 CATTTCATATT-CATTTTACA
* * *
8116709 CATTTCATCTTCCTTAATACA
1 CATTTCATATTCATT-TTACA
8116730 CATTTCATATTCATTTCTACA
1 CATTTCATATTCATTT-TACA
*
8116751 TATTT
1 CATTT
8116756 TTCCATTTCA
Statistics
Matches: 36, Mismatches: 7, Indels: 6
0.73 0.14 0.12
Matches are distributed among these distances:
18 1 0.03
19 11 0.31
20 1 0.03
21 23 0.64
ACGTcount: A:0.27, C:0.24, G:0.00, T:0.48
Consensus pattern (20 bp):
CATTTCATATTCATTTTACA
Found at i:8122498 original size:38 final size:36
Alignment explanation
Indices: 8122454--8122528 Score: 123
Period size: 38 Copynumber: 2.0 Consensus size: 36
8122444 AGTTTGGTCT
*
8122454 AGGGAAAGCCAAGCTTGAGTCTTCCGTGTTCGAGGA
1 AGGGAAAGACAAGCTTGAGTCTTCCGTGTTCGAGGA
8122490 ANNGGGAAAGACAAGCTTGAGTCTTCCGTGTTCGAGGA
1 A--GGGAAAGACAAGCTTGAGTCTTCCGTGTTCGAGGA
8122528 A
1 A
8122529 AGGGGCATAT
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 1 0.03
38 35 0.97
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.21
Consensus pattern (36 bp):
AGGGAAAGACAAGCTTGAGTCTTCCGTGTTCGAGGA
Found at i:8129065 original size:22 final size:22
Alignment explanation
Indices: 8129040--8129084 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
8129030 TTTAATAAAG
8129040 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
8129062 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
8129084 A
1 A
8129085 CACATGTTGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:8144911 original size:13 final size:13
Alignment explanation
Indices: 8144893--8144917 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8144883 TATATGATAT
8144893 GTGTGAAAATTTC
1 GTGTGAAAATTTC
8144906 GTGTGAAAATTT
1 GTGTGAAAATTT
8144918 TATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:8148360 original size:11 final size:11
Alignment explanation
Indices: 8148346--8148401 Score: 67
Period size: 11 Copynumber: 4.9 Consensus size: 11
8148336 AGATAAATAT
8148346 TATTTTATTAA
1 TATTTTATTAA
8148357 TATTTTATTAA
1 TATTTTATTAA
*
8148368 TATTTTAATAAGA
1 TATTTT-ATTA-A
* *
8148381 TATTTTATCAT
1 TATTTTATTAA
8148392 TATTTTATTA
1 TATTTTATTA
8148402 GTATATAAAG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
11 26 0.67
12 6 0.15
13 7 0.18
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:8148407 original size:24 final size:23
Alignment explanation
Indices: 8148314--8148407 Score: 81
Period size: 24 Copynumber: 4.2 Consensus size: 23
8148304 GAGATATTTT
* *
8148314 GATATTTTATAATTATTTAATTA
1 GATATTTTATCATTATTTTATTA
*
8148337 GATA---AAT-ATTATTTTATTA
1 GATATTTTATCATTATTTTATTA
* * *
8148356 -ATATTTTATTAATATTTTAATAA
1 GATATTTTATCATTATTTT-ATTA
8148379 GATATTTTATCATTATTTTATTA
1 GATATTTTATCATTATTTTATTA
8148402 GTATAT
1 G-ATAT
8148408 AAAGAAAGAA
Statistics
Matches: 56, Mismatches: 8, Indels: 13
0.73 0.10 0.17
Matches are distributed among these distances:
18 3 0.05
19 11 0.20
20 2 0.04
21 2 0.04
22 7 0.12
23 11 0.20
24 20 0.36
ACGTcount: A:0.38, C:0.01, G:0.04, T:0.56
Consensus pattern (23 bp):
GATATTTTATCATTATTTTATTA
Found at i:8150219 original size:21 final size:21
Alignment explanation
Indices: 8150195--8150266 Score: 56
Period size: 21 Copynumber: 3.2 Consensus size: 21
8150185 CTTTCTGAAA
8150195 TGAAATGTGTAAGACCATGGT
1 TGAAATGTGTAAGACCATGGT
* * * *
8150216 TGAAA-GATACCATAGGAACATGAT
1 TGAAATG-T---GTAAGACCATGGT
8150240 ATGAAATGTGTAAGACCATGGT
1 -TGAAATGTGTAAGACCATGGT
8150262 TGAAA
1 TGAAA
8150267 GATACCATGG
Statistics
Matches: 37, Mismatches: 8, Indels: 12
0.65 0.14 0.21
Matches are distributed among these distances:
20 1 0.03
21 11 0.30
22 9 0.24
24 9 0.24
25 6 0.16
26 1 0.03
ACGTcount: A:0.40, C:0.10, G:0.25, T:0.25
Consensus pattern (21 bp):
TGAAATGTGTAAGACCATGGT
Found at i:8150246 original size:46 final size:46
Alignment explanation
Indices: 8150194--8150421 Score: 307
Period size: 46 Copynumber: 5.0 Consensus size: 46
8150184 GCTTTCTGAA
* *
8150194 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATAGG-AACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCAT-GGCAACATGAC
*
8150240 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
8150286 AGGAAATGAATAAGACTATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
**
8150332 ATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
8150378 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
8150422 TCAAAGATAA
Statistics
Matches: 164, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
45 3 0.02
46 161 0.98
ACGTcount: A:0.42, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:8150523 original size:13 final size:13
Alignment explanation
Indices: 8150505--8150534 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
8150495 TCAGATGACG
8150505 AATGGTTATATGA
1 AATGGTTATATGA
*
8150518 AATGGTTATGTGA
1 AATGGTTATATGA
8150531 AATG
1 AATG
8150535 TTTACAAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.27, T:0.37
Consensus pattern (13 bp):
AATGGTTATATGA
Found at i:8156568 original size:43 final size:42
Alignment explanation
Indices: 8156515--8156601 Score: 147
Period size: 43 Copynumber: 2.0 Consensus size: 42
8156505 AGAGAGGATG
8156515 AGAAAATGAAGGGAAATGGAAGGCTTTAGGCGTGGAAGAGAA
1 AGAAAATGAAGGGAAATGGAAGGCTTTAGGCGTGGAAGAGAA
* *
8156557 AGANAAATGAAGGGAAATTGAAGGCTTTAGGTGTGGAAGAGAA
1 AGA-AAATGAAGGGAAATGGAAGGCTTTAGGCGTGGAAGAGAA
8156600 AG
1 AG
8156602 GAGTGTGTTG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
42 3 0.07
43 39 0.93
ACGTcount: A:0.43, C:0.03, G:0.37, T:0.16
Consensus pattern (42 bp):
AGAAAATGAAGGGAAATGGAAGGCTTTAGGCGTGGAAGAGAA
Found at i:8157942 original size:53 final size:53
Alignment explanation
Indices: 8157873--8157979 Score: 160
Period size: 53 Copynumber: 2.0 Consensus size: 53
8157863 TTTGGTTCAC
*
8157873 AAATTCACGATATTCAAAGTTATTTTATGAAAACACTAAAATGTAGAAGAGAA
1 AAATTCACGATATTCAAAGTTATTTCATGAAAACACTAAAATGTAGAAGAGAA
* * * * *
8157926 AAATTCTCGATTTTCAAAGTTATTTCATGACAACATTGAAATGTAGAAGAGAA
1 AAATTCACGATATTCAAAGTTATTTCATGAAAACACTAAAATGTAGAAGAGAA
8157979 A
1 A
8157980 GGGAAAAAGA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.46, C:0.10, G:0.14, T:0.30
Consensus pattern (53 bp):
AAATTCACGATATTCAAAGTTATTTCATGAAAACACTAAAATGTAGAAGAGAA
Found at i:8158620 original size:19 final size:19
Alignment explanation
Indices: 8158596--8158635 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
8158586 CACAATTAAG
8158596 TAGCATGACTGGGTATAAT
1 TAGCATGACTGGGTATAAT
8158615 TAGCATGACTGGGTATAAT
1 TAGCATGACTGGGTATAAT
8158634 TA
1 TA
8158636 CGTATGTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.33, C:0.10, G:0.25, T:0.33
Consensus pattern (19 bp):
TAGCATGACTGGGTATAAT
Found at i:8162144 original size:23 final size:22
Alignment explanation
Indices: 8162113--8162157 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
8162103 TTTAAGTTCA
8162113 TTAAAATTTGTT-TGATTTAATTT
1 TTAAAATTT-TTATGA-TTAATTT
*
8162136 TTAATATTTTTATGATTAATTT
1 TTAAAATTTTTATGATTAATTT
8162158 GAAATAAAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (22 bp):
TTAAAATTTTTATGATTAATTT
Found at i:8167548 original size:12 final size:12
Alignment explanation
Indices: 8167533--8167595 Score: 51
Period size: 12 Copynumber: 5.3 Consensus size: 12
8167523 TGTTATCAAT
8167533 TTATTATTATAA
1 TTATTATTATAA
**
8167545 TTATTATTATGGT
1 TTATTATTAT-AA
*
8167558 TTTTTATT-TAA
1 TTATTATTATAA
*
8167569 ATATTATTATTAA
1 TTATTATTA-TAA
8167582 -TATTATTAT-A
1 TTATTATTATAA
8167592 TTAT
1 TTAT
8167596 GAAATAAAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 9
0.71 0.12 0.16
Matches are distributed among these distances:
10 1 0.03
11 10 0.25
12 19 0.47
13 10 0.25
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (12 bp):
TTATTATTATAA
Found at i:8168001 original size:30 final size:31
Alignment explanation
Indices: 8167933--8167991 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
8167923 CACCCTTAAA
* * *
8167933 ATATTTGCACTATTAGTCCTTCAAATTTTTC
1 ATATTTACACTATTAATCCCTCAAATTTTTC
8167964 ATATTTACACT-TTAATCCCTCAAATTTT
1 ATATTTACACTATTAATCCCTCAAATTTT
8167992 GAGTATTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 15 0.60
31 10 0.40
ACGTcount: A:0.29, C:0.20, G:0.03, T:0.47
Consensus pattern (31 bp):
ATATTTACACTATTAATCCCTCAAATTTTTC
Found at i:8170763 original size:20 final size:20
Alignment explanation
Indices: 8170726--8170763 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
8170716 TTATCTGATG
8170726 ATTTAGAAAAGTATTTGAGT
1 ATTTAGAAAAGTATTTGAGT
*
8170746 ATTT-GAAATGTATATTGA
1 ATTTAGAAAAGTAT-TTGA
8170764 TTGAAAAGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.39, C:0.00, G:0.18, T:0.42
Consensus pattern (20 bp):
ATTTAGAAAAGTATTTGAGT
Found at i:8170987 original size:23 final size:23
Alignment explanation
Indices: 8170965--8171008 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
8170955 TTAGAAAATG
8170965 GAAAAGTGAA-TTTGAATTGAAT
1 GAAAAGTGAATTTTGAATTGAAT
* *
8170987 GAGAATTGAATTTTGAATTGAA
1 GAAAAGTGAATTTTGAATTGAA
8171009 AGTGAAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.34
Consensus pattern (23 bp):
GAAAAGTGAATTTTGAATTGAAT
Found at i:8178473 original size:19 final size:19
Alignment explanation
Indices: 8178449--8178485 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
8178439 ACCGAGAACT
8178449 TTAGAAAATTTTTCACTAC
1 TTAGAAAATTTTTCACTAC
**
8178468 TTAGAATTTTTTTCACTA
1 TTAGAAAATTTTTCACTA
8178486 AACAGGGGTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.14, G:0.05, T:0.49
Consensus pattern (19 bp):
TTAGAAAATTTTTCACTAC
Found at i:8187692 original size:42 final size:42
Alignment explanation
Indices: 8187602--8187693 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 42
8187592 ATCAATAGTT
8187602 TATT-AATTTAATACATCATATCAATATCTAGACAAATATTA
1 TATTAAATTTAATACATCATATCAATATCTAGACAAATATTA
* * * *
8187643 AAATAAATTTAATATC-TTATATTAATATCTAGACAAAT-TTA
1 TATTAAATTTAATA-CATCATATCAATATCTAGACAAATATTA
8187684 GTATTAAATT
1 -TATTAAATT
8187694 CATTAAATAA
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
41 5 0.12
42 36 0.86
43 1 0.02
ACGTcount: A:0.47, C:0.09, G:0.03, T:0.41
Consensus pattern (42 bp):
TATTAAATTTAATACATCATATCAATATCTAGACAAATATTA
Found at i:8188083 original size:19 final size:19
Alignment explanation
Indices: 8188061--8188098 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
8188051 GAGTTTTGGT
*
8188061 TCTCAGGTTCAATTTTCAA
1 TCTCAGGTCCAATTTTCAA
*
8188080 TCTCGGGTCCAATTTTCAA
1 TCTCAGGTCCAATTTTCAA
8188099 GTTCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (19 bp):
TCTCAGGTCCAATTTTCAA
Found at i:8190786 original size:39 final size:39
Alignment explanation
Indices: 8190742--8190978 Score: 384
Period size: 39 Copynumber: 6.1 Consensus size: 39
8190732 ATGCAAGACA
*
8190742 CTGGAAATGTATCCGGGCTAAAGTCCCACAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
8190781 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
8190820 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
8190859 CTGGAAATGTATCCGGGCTAAAGTCCTGCAAGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
8190898 CTGGAAATGTATCTGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
8190937 CTGGAAATGTATCCAGGTTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
8190976 CTG
1 CTG
8190979 ATAATATAAT
Statistics
Matches: 182, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 182 1.00
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:8193198 original size:25 final size:27
Alignment explanation
Indices: 8193161--8193213 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
8193151 TCAAACATGC
8193161 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
8193187 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
8193213 A
1 A
8193214 AAACTATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:8198332 original size:12 final size:12
Alignment explanation
Indices: 8198315--8198344 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
8198305 TGTTTGAAAG
8198315 ATAAATAAATGA
1 ATAAATAAATGA
8198327 ATAAATAAATGA
1 ATAAATAAATGA
8198339 ATAAAT
1 ATAAAT
8198345 TTAATTTCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.27
Consensus pattern (12 bp):
ATAAATAAATGA
Found at i:8201255 original size:28 final size:27
Alignment explanation
Indices: 8201198--8201349 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
8201188 TAAATTGTGC
*
8201198 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
8201225 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
8201253 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
8201280 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
8201308 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
8201335 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
8201350 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:8201262 original size:55 final size:55
Alignment explanation
Indices: 8201198--8201349 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
8201188 TAAATTGTGC
*
8201198 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
8201253 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
8201308 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
8201350 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:8206230 original size:46 final size:47
Alignment explanation
Indices: 8206084--8206349 Score: 217
Period size: 46 Copynumber: 5.7 Consensus size: 47
8206074 ATGCTGATAT
* * * * *
8206084 CATGTCCCAGACATGGTCTTACACAAGCTCTA-GTATATCTATGTCGATG
1 CATGTCCCAGACATGGTCTTACACTAGCTC-ACG--TCTCGATGCCAATG
* * *
8206133 CCATGTCCCAAACATGGTCTTACACT-G-ACACATCTCG-TAGCCAATG
1 -CATGTCCCAGACATGGTCTTACACTAGCTCACGTCTCGAT-GCCAATG
* *
8206179 CATGTCCCAGACAT-GTCTTACACTAGCTCACGTCTCGATACCGATG
1 CATGTCCCAGACATGGTCTTACACTAGCTCACGTCTCGATGCCAATG
* * *
8206225 CATGTCCCAGACAT-GTCTTACACTAGCGCTCGTCTCTATGCCAATG
1 CATGTCCCAGACATGGTCTTACACTAGCTCACGTCTCGATGCCAATG
* * * * * *
8206271 CCATGTTCCAGACATGGTCTTACACTGGCTCTCATAAT-G-TGGCCAATA
1 -CATGTCCCAGACATGGTCTTACACTAGCTCACGT-CTCGAT-GCCAATG
*
8206319 CATGTCCCAGATAT-GTCTTACACTAGCTCAC
1 CATGTCCCAGACATGGTCTTACACTAGCTCAC
8206350 ACAAGTGACC
Statistics
Matches: 178, Mismatches: 29, Indels: 22
0.78 0.13 0.10
Matches are distributed among these distances:
44 10 0.06
45 15 0.08
46 77 0.43
47 28 0.16
48 23 0.13
49 2 0.01
50 23 0.13
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTAGCTCACGTCTCGATGCCAATG
Found at i:8206337 original size:140 final size:140
Alignment explanation
Indices: 8206084--8206349 Score: 349
Period size: 140 Copynumber: 1.9 Consensus size: 140
8206074 ATGCTGATAT
* * *
8206084 CATGTCCCAGACATGGTCTTACACAAGCTCTAGTATATCTATGTCGATGCCATGTCCCAAACATG
1 CATGTCCCAGACATGGTCTTACACAAGCGCTAG-ATATCTATGCCAATGCCATGTCCCAAACATG
*
8206149 GTCTTACACTGACACATCTCGTAGCCAATGCATGTCCCAGACATGTCTTACACTAGCTCACGTCT
65 GTCTTACACTGACACATCTCGTAGCCAATACATGTCCCAGACATGTCTTACACTAGCTCACGTCT
8206214 CGATACCGATG
130 CGATACCGATG
* * * * *
8206225 CATGTCCCAGACAT-GTCTTACACTAGCGCTCG-TCTCTATGCCAATGCCATGTTCCAGACATGG
1 CATGTCCCAGACATGGTCTTACACAAGCGCTAGATATCTATGCCAATGCCATGTCCCAAACATGG
* * * * *
8206288 TCTTACACTGGCTC-TCATAATGTGGCCAATACATGTCCCAGATATGTCTTACACTAGCTCAC
66 TCTTACACTGACACATC-T--CGTAGCCAATACATGTCCCAGACATGTCTTACACTAGCTCAC
8206350 ACAAGTGACC
Statistics
Matches: 108, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
137 2 0.02
138 39 0.36
140 53 0.49
141 14 0.13
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (140 bp):
CATGTCCCAGACATGGTCTTACACAAGCGCTAGATATCTATGCCAATGCCATGTCCCAAACATGG
TCTTACACTGACACATCTCGTAGCCAATACATGTCCCAGACATGTCTTACACTAGCTCACGTCTC
GATACCGATG
Found at i:8214774 original size:13 final size:13
Alignment explanation
Indices: 8214756--8214782 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8214746 CCTTATACCT
8214756 ATAATTTCATAAC
1 ATAATTTCATAAC
8214769 ATAATTTCATAAC
1 ATAATTTCATAAC
8214782 A
1 A
8214783 ACCTTCAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.37
Consensus pattern (13 bp):
ATAATTTCATAAC
Found at i:8218166 original size:69 final size:69
Alignment explanation
Indices: 8218093--8218232 Score: 262
Period size: 69 Copynumber: 2.0 Consensus size: 69
8218083 ATATTTATGA
* *
8218093 AAAATATTTATAATTTGAAATTTAAGGAATAATAATTTTTTCAAAAAGTAAATATTTTTTTTCTC
1 AAAATATTTATAATTTGAAATTTAAGGAATAATAATATTTTCAAAAAGTAAATAGTTTTTTTCTC
8218158 GATT
66 GATT
8218162 AAAATATTTATAATTTGAAATTTAAGGAATAATAATATTTTCAAAAAGTAAATAGTTTTTTTCTC
1 AAAATATTTATAATTTGAAATTTAAGGAATAATAATATTTTCAAAAAGTAAATAGTTTTTTTCTC
8218227 GATT
66 GATT
8218231 AA
1 AA
8218233 TTTTGGGTAA
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.44, C:0.04, G:0.08, T:0.44
Consensus pattern (69 bp):
AAAATATTTATAATTTGAAATTTAAGGAATAATAATATTTTCAAAAAGTAAATAGTTTTTTTCTC
GATT
Found at i:8221454 original size:34 final size:34
Alignment explanation
Indices: 8221405--8221490 Score: 145
Period size: 34 Copynumber: 2.5 Consensus size: 34
8221395 GTATGACATC
*
8221405 TTGGTTTGGTTTTAGGTGGTTCAAATTGGCATGTT
1 TTGG-TTGCTTTTAGGTGGTTCAAATTGGCATGTT
*
8221440 TTGGTTGCTTTTAGGTGGTTCAAATTTGCATGTT
1 TTGGTTGCTTTTAGGTGGTTCAAATTGGCATGTT
8221474 TTGGTTGCTTTTAGGTG
1 TTGGTTGCTTTTAGGTG
8221491 TGGTTATAGT
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
34 45 0.92
35 4 0.08
ACGTcount: A:0.13, C:0.07, G:0.30, T:0.50
Consensus pattern (34 bp):
TTGGTTGCTTTTAGGTGGTTCAAATTGGCATGTT
Found at i:8221543 original size:52 final size:52
Alignment explanation
Indices: 8221486--8221589 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
8221476 GGTTGCTTTT
*
8221486 AGGTGTGGTTATAGTCTTGTGATCATGTGTTATGAATTGGTTTAGGTACCTA
1 AGGTGTGGTTATAGTCTTGTGATCATGTGTTATGAATTGATTTAGGTACCTA
8221538 AGGTGTGGTTATAGTCTTGTGATCATGTGTTATGAATTGATTTAGGTACCTA
1 AGGTGTGGTTATAGTCTTGTGATCATGTGTTATGAATTGATTTAGGTACCTA
8221590 TGTAATTGGA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.22, C:0.08, G:0.28, T:0.42
Consensus pattern (52 bp):
AGGTGTGGTTATAGTCTTGTGATCATGTGTTATGAATTGATTTAGGTACCTA
Found at i:8237198 original size:2 final size:2
Alignment explanation
Indices: 8237191--8237217 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8237181 TATGTATGTA
8237191 TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG T
8237218 TTTAGAACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:8238185 original size:15 final size:15
Alignment explanation
Indices: 8238166--8238205 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
8238156 ATGAGTCTTC
*
8238166 AAAAATAAATAGAAAT
1 AAAAATAAAGA-AAAT
*
8238182 AAAAGTAAAGAAAAT
1 AAAAATAAAGAAAAT
8238197 AAAAATAAA
1 AAAAATAAA
8238206 ACGAGTTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (15 bp):
AAAAATAAAGAAAAT
Done.