Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 251 of 276
Found at i:83189317 original size:46 final size:46
Alignment explanation
Indices: 83189250--83189466 Score: 292
Period size: 46 Copynumber: 4.7 Consensus size: 46
83189240 TGGCAACCTT
*
83189250 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
* *
83189296 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
*
83189342 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
* ** * *
83189388 AGAATAAGACCATGGTTGAAAGATACCAAGGCAACATGACA-GAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
* * * * *
83189433 TTGAGTAAGACCATAGTTCAAAGACACTATGGCA
1 -TGTGTAAGACCATGGTTGAAAGATACCATGGCA
83189467 TCACGTCAAA
Statistics
Matches: 154, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 4 0.03
46 150 0.97
ACGTcount: A:0.39, C:0.16, G:0.24, T:0.21
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
Found at i:83189772 original size:23 final size:25
Alignment explanation
Indices: 83189727--83189773 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
83189717 AATAAATATA
*
83189727 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
83189752 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
83189774 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:83193438 original size:10 final size:11
Alignment explanation
Indices: 83193421--83193472 Score: 54
Period size: 11 Copynumber: 4.7 Consensus size: 11
83193411 AAATACTCAT
83193421 GAAAAAGAAAA
1 GAAAAAGAAAA
83193432 G-AAAAGAAAAA
1 GAAAAAG-AAAA
*
83193443 GGAAAAAAAAAA
1 -GAAAAAGAAAA
*
83193455 GAAAAAGGAAA
1 GAAAAAGAAAA
83193466 -AAAAAGA
1 GAAAAAGA
83193473 GCATTTGTAC
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
10 11 0.32
11 14 0.41
12 5 0.15
13 4 0.12
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (11 bp):
GAAAAAGAAAA
Found at i:83193442 original size:16 final size:16
Alignment explanation
Indices: 83193421--83193472 Score: 70
Period size: 16 Copynumber: 3.1 Consensus size: 16
83193411 AAATACTCAT
83193421 GAAAAA-GAAAAGAAAA
1 GAAAAAGGAAAA-AAAA
83193437 GAAAAAGGAAAAAAAAAA
1 GAAAAAGG--AAAAAAAA
83193455 GAAAAAGGAAAAAAAA
1 GAAAAAGGAAAAAAAA
83193471 GA
1 GA
83193473 GCATTTGTAC
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
16 16 0.48
17 1 0.03
18 12 0.36
19 4 0.12
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (16 bp):
GAAAAAGGAAAAAAAA
Found at i:83193449 original size:7 final size:6
Alignment explanation
Indices: 83193421--83193467 Score: 55
Period size: 5 Copynumber: 8.0 Consensus size: 6
83193411 AAATACTCAT
83193421 GAAAAA G-AAAA G-AAAA GAAAAA GGAAAAA -AAAAA GAAAAA GGAAAAA
1 GAAAAA GAAAAA GAAAAA GAAAAA -GAAAAA GAAAAA GAAAAA -GAAAAA
83193468 AAAGAGCATT
Statistics
Matches: 37, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
5 15 0.41
6 10 0.27
7 12 0.32
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (6 bp):
GAAAAA
Found at i:83193449 original size:18 final size:18
Alignment explanation
Indices: 83193428--83193470 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
83193418 CATGAAAAAG
*
83193428 AAAAGAAAAGAAAAAGGA
1 AAAAAAAAAGAAAAAGGA
83193446 AAAAAAAAAGAAAAAGGA
1 AAAAAAAAAGAAAAAGGA
83193464 AAAAAAA
1 AAAAAAA
83193471 GAGCATTTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (18 bp):
AAAAAAAAAGAAAAAGGA
Found at i:83197356 original size:17 final size:17
Alignment explanation
Indices: 83197330--83197362 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
83197320 AGACTGTGAC
*
83197330 CTTGGTATCTTTCTTGG
1 CTTGGCATCTTTCTTGG
83197347 CTTGGCATCTTTCTTG
1 CTTGGCATCTTTCTTG
83197363 CTCACAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.06, C:0.21, G:0.21, T:0.52
Consensus pattern (17 bp):
CTTGGCATCTTTCTTGG
Found at i:83200258 original size:13 final size:13
Alignment explanation
Indices: 83200240--83200265 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
83200230 GTAACATTGT
83200240 TTAAATTCCCTAC
1 TTAAATTCCCTAC
83200253 TTAAATTCCCTAC
1 TTAAATTCCCTAC
83200266 ACCTTGATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.31, G:0.00, T:0.38
Consensus pattern (13 bp):
TTAAATTCCCTAC
Found at i:83210808 original size:40 final size:40
Alignment explanation
Indices: 83210764--83211025 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
83210754 GCTCCTCGTT
* *
83210764 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
83210804 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
83210844 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
83210883 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
83210922 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
83210961 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
83211002 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
83211026 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:83212122 original size:14 final size:14
Alignment explanation
Indices: 83212103--83212129 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
83212093 AGGATGAGCA
83212103 TTTTTTTTTCTTTG
1 TTTTTTTTTCTTTG
83212117 TTTTTTTTTCTTT
1 TTTTTTTTTCTTT
83212130 CTAGTTTCGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.07, G:0.04, T:0.89
Consensus pattern (14 bp):
TTTTTTTTTCTTTG
Found at i:83216711 original size:23 final size:22
Alignment explanation
Indices: 83216681--83216751 Score: 88
Period size: 23 Copynumber: 3.1 Consensus size: 22
83216671 TACAGAACTT
*
83216681 ACCACAAAGACATTGTAGGATAC
1 ACCACAAAG-CATTGTAGAATAC
83216704 ACCACAAAGGCATTGTAGAATAC
1 ACCACAAA-GCATTGTAGAATAC
* *
83216727 ACCACATAAGCATTGCAAAATAC
1 ACCACA-AAGCATTGTAGAATAC
83216750 AC
1 AC
83216752 TATAAAAAAC
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
23 40 0.93
24 3 0.07
ACGTcount: A:0.45, C:0.24, G:0.14, T:0.17
Consensus pattern (22 bp):
ACCACAAAGCATTGTAGAATAC
Found at i:83216849 original size:46 final size:46
Alignment explanation
Indices: 83216799--83217024 Score: 227
Period size: 46 Copynumber: 4.9 Consensus size: 46
83216789 TCGAATATGT
* * * *
83216799 CATAAAAGCTTCATAGATTATGCTAAAAAAGCTCCACATAATACAC
1 CATAAAAGCTTCATAGATTATGCCACAAAGGCTCCACAAAATACAC
* *
83216845 CATAAAGGCTACATAGATTATGCCACAAAGGCTCCACAAAATACAC
1 CATAAAAGCTTCATAGATTATGCCACAAAGGCTCCACAAAATACAC
* * * * * * * **
83216891 TAGAAAGGCTTAATAGATTATACCATAAAGGCTCCACACAATACGT
1 CATAAAAGCTTCATAGATTATGCCACAAAGGCTCCACAAAATACAC
* * * * **
83216937 CATAAATGCATCATAGATTATGCCACAAAGGCTCCATAGAATATGC
1 CATAAAAGCTTCATAGATTATGCCACAAAGGCTCCACAAAATACAC
* * * *
83216983 CATACAAGCATCATAAATTATGCCACAAAGGCTCCATAAAAT
1 CATAAAAGCTTCATAGATTATGCCACAAAGGCTCCACAAAAT
83217025 GTGCCATAAA
Statistics
Matches: 150, Mismatches: 30, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
46 150 1.00
ACGTcount: A:0.43, C:0.23, G:0.12, T:0.22
Consensus pattern (46 bp):
CATAAAAGCTTCATAGATTATGCCACAAAGGCTCCACAAAATACAC
Found at i:83216875 original size:23 final size:23
Alignment explanation
Indices: 83216844--83217046 Score: 92
Period size: 23 Copynumber: 8.8 Consensus size: 23
83216834 ACATAATACA
83216844 CCATAAAGGCTACATAGATTATG
1 CCATAAAGGCTACATAGATTATG
* * * * * **
83216867 CCACAAAGGCTCCACAAAATACA
1 CCATAAAGGCTACATAGATTATG
* * *
83216890 CTAGAAAGGCTTA-ATAGATTATA
1 CCATAAAGGC-TACATAGATTATG
* * * * *
83216913 CCATAAAGGCTCCACACAATACG
1 CCATAAAGGCTACATAGATTATG
* *
83216936 TCATAAATGC-ATCATAGATTATG
1 CCATAAAGGCTA-CATAGATTATG
* * *
83216959 CCACAAAGGCTCCATAGAATATG
1 CCATAAAGGCTACATAGATTATG
*
83216982 CCATACAA-GC-ATCATAAATTATG
1 CCATA-AAGGCTA-CATAGATTATG
* * * * *
83217005 CCACAAAGGCTCCATAAAATGTG
1 CCATAAAGGCTACATAGATTATG
83217028 CCATAAAGGC-ATCATAGAT
1 CCATAAAGGCTA-CATAGAT
83217047 AACCTATAAC
Statistics
Matches: 125, Mismatches: 46, Indels: 18
0.66 0.24 0.10
Matches are distributed among these distances:
22 3 0.02
23 119 0.95
24 3 0.02
ACGTcount: A:0.41, C:0.23, G:0.14, T:0.22
Consensus pattern (23 bp):
CCATAAAGGCTACATAGATTATG
Found at i:83217003 original size:92 final size:91
Alignment explanation
Indices: 83216781--83217046 Score: 273
Period size: 92 Copynumber: 2.9 Consensus size: 91
83216771 TAAACCAAAG
* * * * * *
83216781 AGGCTCCATCGAATATGTCATAAAAGCTTCATAGATTATGCTAAAAAAGCTCCACATAATACACC
1 AGGCTCCATAGAATATGCCAT-AAAGCTTCATAGATTATGCCAAAAAGGCTCCACAAAATACGCC
83216846 ATAAAGGC-TACATAGATTATGCCACAA
65 ATAAAGGCAT-CATAGATTATGCCACAA
* * ** * * * * * * *
83216873 AGGCTCCACAAAATACACTAGAAAGGCTTAATAGATTATACCATAAAGGCTCCACACAATACGTC
1 AGGCTCCATAGAATATGCCATAAA-GCTTCATAGATTATGCCAAAAAGGCTCCACAAAATACGCC
*
83216938 ATAAATGCATCATAGATTATGCCACAA
65 ATAAAGGCATCATAGATTATGCCACAA
* * * * **
83216965 AGGCTCCATAGAATATGCCATACAAGCATCATAAATTATGCCACAAAGGCTCCATAAAATGTGCC
1 AGGCTCCATAGAATATGCCATA-AAGCTTCATAGATTATGCCAAAAAGGCTCCACAAAATACGCC
83217030 ATAAAGGCATCATAGAT
65 ATAAAGGCATCATAGAT
83217047 AACCTATAAC
Statistics
Matches: 137, Mismatches: 34, Indels: 6
0.77 0.19 0.03
Matches are distributed among these distances:
91 3 0.02
92 131 0.96
93 3 0.02
ACGTcount: A:0.41, C:0.22, G:0.14, T:0.23
Consensus pattern (91 bp):
AGGCTCCATAGAATATGCCATAAAGCTTCATAGATTATGCCAAAAAGGCTCCACAAAATACGCCA
TAAAGGCATCATAGATTATGCCACAA
Found at i:83217030 original size:46 final size:46
Alignment explanation
Indices: 83216781--83217043 Score: 206
Period size: 46 Copynumber: 5.7 Consensus size: 46
83216771 TAAACCAAAG
** * * * * * *
83216781 AGGCTCCATCGAATATGTCATAAAAGCTTCATAGATTATGCTAAAA
1 AGGCTCCATAAAATATGCCATAAAGGCATCATAAATTATGCCACAA
* * * ** *
83216827 AAGCTCCACATAATACACCATAAAGGC-TACATAGATTATGCCACAA
1 AGGCTCCATAAAATATGCCATAAAGGCAT-CATAAATTATGCCACAA
* ** * * * * * * *
83216873 AGGCTCCACAAAATACACTAGAAAGGCTTAATAGATTATACCATAA
1 AGGCTCCATAAAATATGCCATAAAGGCATCATAAATTATGCCACAA
* * * * * *
83216919 AGGCTCCACACAATACGTCATAAATGCATCATAGATTATGCCACAA
1 AGGCTCCATAAAATATGCCATAAAGGCATCATAAATTATGCCACAA
*
83216965 AGGCTCCATAGAATATGCCATACAA-GCATCATAAATTATGCCACAA
1 AGGCTCCATAAAATATGCCATA-AAGGCATCATAAATTATGCCACAA
*
83217011 AGGCTCCATAAAATGTGCCATAAAGGCATCATA
1 AGGCTCCATAAAATATGCCATAAAGGCATCATA
83217044 GATAACCTAT
Statistics
Matches: 179, Mismatches: 34, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
45 3 0.02
46 173 0.97
47 3 0.02
ACGTcount: A:0.41, C:0.22, G:0.14, T:0.22
Consensus pattern (46 bp):
AGGCTCCATAAAATATGCCATAAAGGCATCATAAATTATGCCACAA
Found at i:83218508 original size:87 final size:88
Alignment explanation
Indices: 83218352--83218554 Score: 258
Period size: 87 Copynumber: 2.3 Consensus size: 88
83218342 TATTGATGCT
83218352 CATCGAATAT-GAAATGGGATA-TTTTCGACTATCGACTATGAAAAGAGATGGTGACGACCATCA
1 CATCGAATATGGAAA-GGGATAGTTTTCGACTATCGACTATGAAAAGAGATGGTGACGACCATCA
83218415 ACTATGAAAAGGGATGG-TCACGAC
65 ACTATGAAAAGGGATGGCT-ACGAC
* * * *
83218439 CAT-GAAATATGGAAAGGGATAGTTTT-GACTATTGACTATGAAGAGGGATGGTGATGACCATCG
1 CATCG-AATATGGAAAGGGATAGTTTTCGACTATCGACTATGAAAAGAGATGGTGACGACCATC-
*
83218502 AA-TATGAAAAGGGATGGCTTCGAC
64 AACTATGAAAAGGGATGGCTACGAC
* *
83218526 CATCGAATATGAAAAGGGGTAG-TTTCGAC
1 CATCGAATATGGAAAGGGATAGTTTTCGAC
83218555 CAACGATTAA
Statistics
Matches: 102, Mismatches: 7, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
86 4 0.04
87 86 0.84
88 12 0.12
ACGTcount: A:0.35, C:0.13, G:0.27, T:0.24
Consensus pattern (88 bp):
CATCGAATATGGAAAGGGATAGTTTTCGACTATCGACTATGAAAAGAGATGGTGACGACCATCAA
CTATGAAAAGGGATGGCTACGAC
Found at i:83218552 original size:29 final size:29
Alignment explanation
Indices: 83218352--83218556 Score: 173
Period size: 29 Copynumber: 7.1 Consensus size: 29
83218342 TATTGATGCT
* **
83218352 CATCGAATATGAAATGGGATATTTTCGAC
1 CATCGAATATGAAAAGGGATGGTTTCGAC
* * * **
83218381 TATCGACTATGAAAAGAGATGGTGACGAC
1 CATCGAATATGAAAAGGGATGGTTTCGAC
**
83218410 CATC-AACTATGAAAAGGGATGGTCACGAC
1 CATCGAA-TATGAAAAGGGATGGTTTCGAC
* * *
83218439 CAT-GAAATATGGAAAGGGATAGTTTTGAC
1 CATCG-AATATGAAAAGGGATGGTTTCGAC
* * * * *
83218468 TATTGACTATGAAGAGGGATGGTGAT-GAC
1 CATCGAATATGAAAAGGGATGGT-TTCGAC
*
83218497 CATCGAATATGAAAAGGGATGGCTTCGAC
1 CATCGAATATGAAAAGGGATGGTTTCGAC
* *
83218526 CATCGAATATGAAAAGGGGTAGTTTCGAC
1 CATCGAATATGAAAAGGGATGGTTTCGAC
83218555 CA
1 CA
83218557 ACGATTAAAG
Statistics
Matches: 138, Mismatches: 32, Indels: 12
0.76 0.18 0.07
Matches are distributed among these distances:
28 2 0.01
29 132 0.96
30 4 0.03
ACGTcount: A:0.36, C:0.14, G:0.27, T:0.24
Consensus pattern (29 bp):
CATCGAATATGAAAAGGGATGGTTTCGAC
Found at i:83242694 original size:24 final size:24
Alignment explanation
Indices: 83242640--83242705 Score: 78
Period size: 24 Copynumber: 2.6 Consensus size: 24
83242630 ATTACCATTT
***
83242640 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTAT---ATTACCAAAG
83242667 TACCCTCGATTTATATTACCAAAG
1 TACCCTCGATTTATATTACCAAAG
83242691 TACCCTCGATTTATA
1 TACCCTCGATTTATA
83242706 GAATTATCGT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
24 22 0.61
27 14 0.39
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.38
Consensus pattern (24 bp):
TACCCTCGATTTATATTACCAAAG
Found at i:83242779 original size:27 final size:27
Alignment explanation
Indices: 83242370--83242778 Score: 574
Period size: 27 Copynumber: 15.3 Consensus size: 27
83242360 ATTACCAAAG
* * *
83242370 TACCCTCAATTTACAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
83242397 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
83242424 TACCCTCAATTTATAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
83242451 TACCCTTGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
83242478 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
83242505 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
83242532 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
83242559 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
83242586 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
83242613 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
83242640 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
***
83242667 TACCCTCGATTTAT---ATTACCAAAG
1 TACCCTCGATTTATAGAATTACCATTT
* *
83242691 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
83242718 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * * *
83242745 TACCCTC-AGTTTACAAAATTATCGTTT
1 TACCCTCGA-TTTATAGAATTACCATTT
83242772 TACCCTC
1 TACCCTC
83242779 AATTGTGAAA
Statistics
Matches: 344, Mismatches: 34, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
24 21 0.06
26 1 0.00
27 322 0.94
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:83242852 original size:54 final size:55
Alignment explanation
Indices: 83242785--83242911 Score: 143
Period size: 54 Copynumber: 2.3 Consensus size: 55
83242775 CCTCAATTGT
* * * *
83242785 GAAATTACTGAAATACCC-CTATAGGATAGAATTACCAAAATACCACTGGTTTA-A
1 GAAATTACAGAAATACCCTCAATAGG-TAAAATTACCAAAATACCACTGATTTACA
* ** *
83242839 GAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACA
1 GAAATTACAGAAATACCCTCAATAGGTAAAATTACCAAAATACCACTGATTTACA
*
83242894 -AAATTATAGAAATACCCT
1 GAAATTACAGAAATACCCT
83242912 TGACTTTTTT
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
54 57 0.92
55 5 0.08
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.27
Consensus pattern (55 bp):
GAAATTACAGAAATACCCTCAATAGGTAAAATTACCAAAATACCACTGATTTACA
Found at i:83242890 original size:27 final size:26
Alignment explanation
Indices: 83242814--83242899 Score: 84
Period size: 27 Copynumber: 3.2 Consensus size: 26
83242804 TATAGGATAG
* *
83242814 AATTACCAAAATACCACTGGTTTAAGA
1 AATTACCAAAATACCCCTGATTTAA-A
* * *
83242841 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-GATTT-AAA
83242868 AATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCCTGATTTA-AA
83242895 AATTA
1 AATTA
83242900 TAGAAATACC
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
26 3 0.06
27 39 0.83
28 5 0.11
ACGTcount: A:0.44, C:0.21, G:0.07, T:0.28
Consensus pattern (26 bp):
AATTACCAAAATACCCCTGATTTAAA
Found at i:83242906 original size:27 final size:27
Alignment explanation
Indices: 83242876--83242970 Score: 95
Period size: 27 Copynumber: 3.4 Consensus size: 27
83242866 AAAATTACCA
*
83242876 AAATACCCCTGATTTACAAAATTATAG
1 AAATACCCTTGATTTACAAAATTATAG
83242903 AAATACCCTTGACTTTTTTA-AAAATTATAG
1 AAATACCCTTGA----TTTACAAAATTATAG
* * *
83242933 GAATACCATTGGTTTACAAAATTACT-G
1 AAATACCCTTGATTTACAAAATTA-TAG
83242960 AAATACCCTTG
1 AAATACCCTTG
83242971 GTTTGTAGAT
Statistics
Matches: 56, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
26 4 0.07
27 28 0.50
28 1 0.02
30 19 0.34
31 4 0.07
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.34
Consensus pattern (27 bp):
AAATACCCTTGATTTACAAAATTATAG
Found at i:83242971 original size:27 final size:26
Alignment explanation
Indices: 83242822--83242974 Score: 78
Period size: 27 Copynumber: 5.6 Consensus size: 26
83242812 AGAATTACCA
*
83242822 AAATACCAC-TGGTTTAAGAAATTACCG
1 AAATACC-CTTGGTTTAA-AAATTACTG
*** * **
83242849 AAATACCCTCAATTTGTAAAATTACCA
1 AAATACCCTTGGTTT-AAAAATTACTG
* *
83242876 AAATACCCCTGATTTACAAAATTA-TAG
1 AAATACCCTTGGTTTA-AAAATTACT-G
*
83242903 AAATACCCTTGACTTTTTTAAAAATTA-TAG
1 AAATACCCTTG----GTTTAAAAATTACT-G
* *
83242933 GAATACCATTGGTTTACAAAATTACTG
1 AAATACCCTTGGTTTA-AAAATTACTG
83242960 AAATACCCTTGGTTT
1 AAATACCCTTGGTTT
83242975 GTAGATTTAC
Statistics
Matches: 98, Mismatches: 18, Indels: 20
0.72 0.13 0.15
Matches are distributed among these distances:
26 5 0.05
27 68 0.69
28 2 0.02
30 19 0.19
31 4 0.04
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.33
Consensus pattern (26 bp):
AAATACCCTTGGTTTAAAAATTACTG
Found at i:83243066 original size:27 final size:27
Alignment explanation
Indices: 83243036--83243087 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
83243026 TAGGTAAAAA
83243036 GACCGTAA-AGCCCTTGTAGGGTAAAGT
1 GACCGTAATA-CCCTTGTAGGGTAAAGT
*
83243063 GACCGTAATACCCTTGTATGGTAAA
1 GACCGTAATACCCTTGTAGGGTAAA
83243088 ATGATGAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (27 bp):
GACCGTAATACCCTTGTAGGGTAAAGT
Found at i:83243985 original size:24 final size:24
Alignment explanation
Indices: 83243903--83243985 Score: 96
Period size: 25 Copynumber: 3.4 Consensus size: 24
83243893 AGGAAGTGCT
* *
83243903 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTCTACCCCAGTTTATC
83243927 GAAAAGGGCTCTACCCCAGTTTATC
1 -AAAAGGGCTCTACCCCAGTTTATC
* *
83243952 AGAAAGGGCTTTACCCCAG-TTATT
1 A-AAAGGGCTCTACCCCAGTTTATC
83243976 AAAAGAGGCT
1 AAAAG-GGCT
83243986 AGGCCTCCTG
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
23 4 0.08
24 10 0.19
25 38 0.73
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (24 bp):
AAAAGGGCTCTACCCCAGTTTATC
Found at i:83244179 original size:42 final size:42
Alignment explanation
Indices: 83244120--83244211 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
83244110 TAGTCTCCCC
* *
83244120 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGATATTACATGTGATATTG
83244162 AAATGGGCTTGCATACATTCATTGATATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGATATTACATGTGATATTG
83244204 AAATGGGC
1 AAATGGGC
83244212 CTAAGGGCCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.37
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGATATTACATGTGATATTG
Found at i:83244271 original size:31 final size:31
Alignment explanation
Indices: 83244235--83244375 Score: 255
Period size: 31 Copynumber: 4.5 Consensus size: 31
83244225 CGTTTACAGT
*
83244235 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
83244266 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
83244297 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
83244328 AAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
83244359 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
83244376 AACCATTAAA
Statistics
Matches: 105, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 105 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:83244436 original size:93 final size:92
Alignment explanation
Indices: 83244235--83244415 Score: 228
Period size: 93 Copynumber: 2.0 Consensus size: 92
83244225 CGTTTACAGT
* * ** * *
83244235 AAAGGCTTCGGCCTAGTGATATGATTTATGAAAAGGCTTCGGCCCAGTGATATGATTTATGAAAA
1 AAAGGCTTTGGCCCAGTGATATGATTTATGAAAAGGCTTCGGCCCAGTGATACCATTAACGAAAA
* * *
83244300 GGCTTCGGCCTAGTGATATGATTTATGA
66 GGCTTCGGCCCAGTGATATGA-TCAAGA
83244328 AAAGGCTTTGGCCCAGTGATATGATTTATGAAAAGGCTTCGGCCCAGT-A-ACCATTAAACG-AA
1 AAAGGCTTTGGCCCAGTGATATGATTTATGAAAAGGCTTCGGCCCAGTGATACCATT-AACGAAA
83244390 AGGCTTCGGCCCAGT-ATATG-TCAAGA
65 AGGCTTCGGCCCAGTGATATGATCAAGA
83244416 CTATATAGGG
Statistics
Matches: 78, Mismatches: 9, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
88 4 0.05
90 5 0.06
91 20 0.26
92 3 0.04
93 46 0.59
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (92 bp):
AAAGGCTTTGGCCCAGTGATATGATTTATGAAAAGGCTTCGGCCCAGTGATACCATTAACGAAAA
GGCTTCGGCCCAGTGATATGATCAAGA
Found at i:83250377 original size:195 final size:195
Alignment explanation
Indices: 83250045--83250437 Score: 777
Period size: 195 Copynumber: 2.0 Consensus size: 195
83250035 ATGCATCAAA
83250045 TTAATACTGGCTCCTAAATCACATAGAGCCTTGCTGATCCTCTATCTCAATCGATATTATAAACC
1 TTAATACTGGCTCCTAAATCACATAGAGCCTTGCTGATCCTCTATCTCAATCGATATTATAAACC
*
83250110 TCCCAGGATTTTTAAATTTAAGGGCATCGTATTTTTTATAATTGCACTACATGAGGCGCTTACGT
66 TCCCAGGATTTTTAAATTTAAGGGCATCGTATTTTTTATAATTGCACTACATGAGGCGCTTACAT
83250175 TGACTTTCTCTTCTGTTTTTAATTTCCTACATCTATACATAATTTCTTTTAAATACTTGGCATAT
131 TGACTTTCTCTTCTGTTTTTAATTTCCTACATCTATACATAATTTCTTTTAAATACTTGGCATAT
83250240 TTAATACTGGCTCCTAAATCACATAGAGCCTTGCTGATCCTCTATCTCAATCGATATTATAAACC
1 TTAATACTGGCTCCTAAATCACATAGAGCCTTGCTGATCCTCTATCTCAATCGATATTATAAACC
83250305 TCCCAGGATTTTTAAATTTAAGGGCATCGTATTTTTTATAATTGCACTACATGAGGCGCTTACAT
66 TCCCAGGATTTTTAAATTTAAGGGCATCGTATTTTTTATAATTGCACTACATGAGGCGCTTACAT
83250370 TGACTTTCTCTTCTGTTTTTAATTTCCTACATCTATACATAATTTCTTTTAAATACTTGGCATAT
131 TGACTTTCTCTTCTGTTTTTAATTTCCTACATCTATACATAATTTCTTTTAAATACTTGGCATAT
83250435 TTA
1 TTA
83250438 GGAACTTTTT
Statistics
Matches: 197, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
195 197 1.00
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41
Consensus pattern (195 bp):
TTAATACTGGCTCCTAAATCACATAGAGCCTTGCTGATCCTCTATCTCAATCGATATTATAAACC
TCCCAGGATTTTTAAATTTAAGGGCATCGTATTTTTTATAATTGCACTACATGAGGCGCTTACAT
TGACTTTCTCTTCTGTTTTTAATTTCCTACATCTATACATAATTTCTTTTAAATACTTGGCATAT
Found at i:83257436 original size:44 final size:45
Alignment explanation
Indices: 83257379--83257549 Score: 130
Period size: 49 Copynumber: 3.7 Consensus size: 45
83257369 TGCAAGCTAA
*
83257379 TGTAAGACTTGTCTGGGACATGGCATCAG-CTTTATGTGTGTCAG
1 TGTAAGACCTGTCTGGGACATGGCATCAGCCTTTATGTGTGTCAG
** * *** *
83257423 TGTAAGACCTGTCTGGGACACAGCATCGGCCTCGATTTATGAAAGTCTG
1 TGTAAGACCTGTCTGGGACATGGCATCAG-C-C--TTTATGTGTGTCAG
* * * * *
83257472 TGTAAGACCTATCTAGGACATCGCATC-GACTTTGATGTGCTAGCCAG
1 TGTAAGACCTGTCTGGGACATGGCATCAGCCTTT-ATGTG-T-GTCAG
*
83257519 TGTAAGACCATGTCTGGGACATGGCGTCAGC
1 TGTAAGACC-TGTCTGGGACATGGCATCAGC
83257550 ATTTTACCCT
Statistics
Matches: 94, Mismatches: 23, Indels: 15
0.71 0.17 0.11
Matches are distributed among these distances:
44 28 0.30
45 3 0.03
46 1 0.01
47 13 0.14
48 15 0.16
49 34 0.36
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (45 bp):
TGTAAGACCTGTCTGGGACATGGCATCAGCCTTTATGTGTGTCAG
Found at i:83257498 original size:93 final size:95
Alignment explanation
Indices: 83257325--83257539 Score: 242
Period size: 93 Copynumber: 2.3 Consensus size: 95
83257315 ACATTATGAG
* * * * * * *
83257325 AGCCAGTGTAAGACATGTCTGGGGCATACATCGGCTTCGAGATATGCAAGCTAATGTAAGACTTG
1 AGCCAGTGTAAGACCTGTCTGGGACACACATCGGCCTCGAGATATGAAAGCTAATGTAAGACCTA
* *
83257390 TCTGGGACATGGCATC-AGCTTT-ATGTG-T
66 TCTAGGACATCGCATCGA-CTTTGATGTGCT
* ** *
83257418 -GTCAGTGTAAGACCTGTCTGGGACACAGCATCGGCCTCGATTTATGAAAGTCT-GTGTAAGACC
1 AGCCAGTGTAAGACCTGTCTGGGACACA-CATCGGCCTCGAGATATGAAAG-CTAATGTAAGACC
83257481 TATCTAGGACATCGCATCGACTTTGATGTGCT
64 TATCTAGGACATCGCATCGACTTTGATGTGCT
83257513 AGCCAGTGTAAGACCATGTCTGGGACA
1 AGCCAGTGTAAGACC-TGTCTGGGACA
83257540 TGGCGTCAGC
Statistics
Matches: 101, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
92 23 0.23
93 45 0.45
94 8 0.08
95 1 0.01
96 13 0.13
97 11 0.11
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (95 bp):
AGCCAGTGTAAGACCTGTCTGGGACACACATCGGCCTCGAGATATGAAAGCTAATGTAAGACCTA
TCTAGGACATCGCATCGACTTTGATGTGCT
Found at i:83262679 original size:19 final size:19
Alignment explanation
Indices: 83262655--83262695 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
83262645 CGGCCAGAGG
*
83262655 ACATGGGCGTGTCGAAGGC
1 ACATGGGCATGTCGAAGGC
83262674 ACATGGGCATGTCGAAGGC
1 ACATGGGCATGTCGAAGGC
83262693 ACA
1 ACA
83262696 CGAGCGTGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.27, C:0.22, G:0.37, T:0.15
Consensus pattern (19 bp):
ACATGGGCATGTCGAAGGC
Found at i:83268956 original size:42 final size:41
Alignment explanation
Indices: 83268891--83269018 Score: 141
Period size: 44 Copynumber: 3.0 Consensus size: 41
83268881 TATATGTAAA
*
83268891 CAAATATCGATGCCACTATCCCAGACACGGTCTTACACAAAAT
1 CAAATA-CGATGCCA-TATCCCAGACATGGTCTTACACAAAAT
* *
83268934 CAAATACGATGCCGATGTCCCAGACATGGTCTTACACGTAAAT
1 CAAATACGATGCC-ATATCCCAGACATGGTCTTACAC-AAAAT
* *
83268977 CATAAGT-CGATGCCAACATCCCAAACATGGTCTTACACAAAA
1 CA-AA-TACGATGCC-ATATCCCAGACATGGTCTTACACAAAA
83269019 ACACATATCG
Statistics
Matches: 73, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
42 27 0.37
43 16 0.22
44 29 0.40
45 1 0.01
ACGTcount: A:0.37, C:0.28, G:0.14, T:0.21
Consensus pattern (41 bp):
CAAATACGATGCCATATCCCAGACATGGTCTTACACAAAAT
Found at i:83270821 original size:4 final size:4
Alignment explanation
Indices: 83270812--83270842 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
83270802 CAAAGGTTCA
83270812 TATC TATC TATC TATC TATC TATC TATC TAT
1 TATC TATC TATC TATC TATC TATC TATC TAT
83270843 ACAAAAGGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.00, T:0.52
Consensus pattern (4 bp):
TATC
Found at i:83271475 original size:19 final size:19
Alignment explanation
Indices: 83271454--83271489 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
83271444 AATGAAATCA
83271454 AAAATT-TTATATTAACTG
1 AAAATTATTATATTAACTG
*
83271472 AAAATTATTATGTTAACT
1 AAAATTATTATATTAACT
83271490 TGATTAGCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (19 bp):
AAAATTATTATATTAACTG
Found at i:83276812 original size:12 final size:12
Alignment explanation
Indices: 83276788--83276840 Score: 52
Period size: 13 Copynumber: 4.0 Consensus size: 12
83276778 GACGTTCCTC
83276788 TTTTTCTTTCTTT
1 TTTTTC-TTCTTT
*
83276801 TTGTTCTTCTTTAT
1 TTTTTCTTC-TT-T
83276815 TATTTTCTTCTTT
1 T-TTTTCTTCTTT
83276828 TTTTTCTCTCTTT
1 TTTTTCT-TCTTT
83276841 CTGAAAACGG
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
12 9 0.26
13 14 0.41
14 4 0.12
15 7 0.21
ACGTcount: A:0.04, C:0.17, G:0.02, T:0.77
Consensus pattern (12 bp):
TTTTTCTTCTTT
Found at i:83280960 original size:12 final size:13
Alignment explanation
Indices: 83280944--83280978 Score: 54
Period size: 12 Copynumber: 2.7 Consensus size: 13
83280934 AGAAGAGAGG
83280944 GAGAAGAAAGAAA
1 GAGAAGAAAGAAA
83280957 -AGAAGAAAGAAA
1 GAGAAGAAAGAAA
83280969 GGAGAAGAAA
1 -GAGAAGAAA
83280979 AAATAAGGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 12 0.60
14 8 0.40
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (13 bp):
GAGAAGAAAGAAA
Found at i:83281631 original size:22 final size:22
Alignment explanation
Indices: 83281606--83281661 Score: 112
Period size: 22 Copynumber: 2.5 Consensus size: 22
83281596 ATAAAGTGCA
83281606 ATACTTCGTGAAATATAGTTAT
1 ATACTTCGTGAAATATAGTTAT
83281628 ATACTTCGTGAAATATAGTTAT
1 ATACTTCGTGAAATATAGTTAT
83281650 ATACTTCGTGAA
1 ATACTTCGTGAA
83281662 GTTTATAATC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.39
Consensus pattern (22 bp):
ATACTTCGTGAAATATAGTTAT
Found at i:83287764 original size:46 final size:49
Alignment explanation
Indices: 83287660--83287933 Score: 246
Period size: 46 Copynumber: 5.8 Consensus size: 49
83287650 CCACATTATG
* * *
83287660 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACG-
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGT
* * *
83287708 AGTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGGGATGT
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGT
* *
83287755 A-AGCCAGTGTAAGA-CATGTCTGGAACAT-GCATCGG-CTACGAAATGT
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGATGT
* * * * * * *
83287801 ---GTCAGTGTAAGACCATGTCTGGGACATGGCGTTGGCATAGATATAT
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGT
* * * *
83287847 AAGAGCTAGTGTAAGACCATGTCCGGGACATGGCGTCGGCCTCGGTGATG-
1 -AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC-GAGATGT
* * *
83287897 ATAGTCAGTGTAAGACCATGTCTGGGTCATGGCATCG
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
83287934 ACAACTTGCC
Statistics
Matches: 182, Mismatches: 34, Indels: 19
0.77 0.14 0.08
Matches are distributed among these distances:
44 11 0.06
45 15 0.08
46 60 0.33
47 16 0.09
48 13 0.07
49 31 0.17
50 33 0.18
51 3 0.02
ACGTcount: A:0.26, C:0.19, G:0.32, T:0.23
Consensus pattern (49 bp):
AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGT
Found at i:83291181 original size:27 final size:27
Alignment explanation
Indices: 83291150--83291327 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
83291140 TAAATTGTAC
83291150 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
83291177 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
83291203 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
83291231 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
83291259 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
83291286 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
83291313 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
83291328 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:83291264 original size:82 final size:81
Alignment explanation
Indices: 83291151--83291306 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
83291141 AAATTGTACA
* *
83291151 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
83291215 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
83291232 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
83291297 TGCGAGTTGA
65 TGCGAATTGA
83291307 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:83291318 original size:82 final size:81
Alignment explanation
Indices: 83291147--83291327 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
83291137 GATTAAATTG
* *
83291147 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
83291212 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
83291228 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
83291292 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
83291310 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
83291328 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:83299333 original size:27 final size:27
Alignment explanation
Indices: 83299302--83299479 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
83299292 TAAATTGTAC
83299302 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
83299329 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
83299355 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
83299383 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
83299411 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
83299438 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
83299465 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
83299480 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:83299416 original size:82 final size:81
Alignment explanation
Indices: 83299303--83299458 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
83299293 AAATTGTACA
* *
83299303 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
83299367 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
83299384 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
83299449 TGCGAGTTGA
65 TGCGAATTGA
83299459 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:83299470 original size:82 final size:81
Alignment explanation
Indices: 83299299--83299479 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
83299289 GATTAAATTG
* *
83299299 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
83299364 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
83299380 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
83299444 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
83299462 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
83299480 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:83310964 original size:37 final size:37
Alignment explanation
Indices: 83310899--83311000 Score: 159
Period size: 37 Copynumber: 2.8 Consensus size: 37
83310889 AGCTCAGACG
* * *
83310899 AAATCTCCACACGAAGTTATCGGCTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
83310936 AAATCTCCACACGTAGTCATTGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
83310973 TAATCTCCACACGTAGTCATCGGGTCTT
1 AAATCTCCACACGTAGTCATCGGGTCTT
83311001 TAGAGCTCGG
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:83311244 original size:49 final size:49
Alignment explanation
Indices: 83311119--83311630 Score: 858
Period size: 49 Copynumber: 10.5 Consensus size: 49
83311109 CCCTTCGGGA
* * * *
83311119 CTTATCACAT-T-TATACACTTTCACATCCATCA-AGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACA-TCGGCCATTAGGC
*
83311166 CCTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83311213 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83311262 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83311311 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83311360 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83311409 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
83311458 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83311507 CTTATCAC--ATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83311554 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83311605 CTTATCACATATATATATACACTTTC
1 CTTATCAC--ATATATATACACTTTC
83311631 CAATGAATAA
Statistics
Matches: 444, Mismatches: 12, Indels: 14
0.94 0.03 0.03
Matches are distributed among these distances:
46 1 0.00
47 88 0.20
48 1 0.00
49 290 0.65
51 64 0.14
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:83312035 original size:40 final size:40
Alignment explanation
Indices: 83311991--83312070 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 40
83311981 ATCTGACCGC
83311991 TCTTCACTACGAATAAAATTTCTCATTTTACAGAATTCAA
1 TCTTCACTACGAATAAAATTTCTCATTTTACAGAATTCAA
* * * *
83312031 TCTTCACTTCGAATCAAATTTTTCATTTTGCAGAATTCAA
1 TCTTCACTACGAATAAAATTTCTCATTTTACAGAATTCAA
83312071 AATGTCTTCT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.34, C:0.20, G:0.06, T:0.40
Consensus pattern (40 bp):
TCTTCACTACGAATAAAATTTCTCATTTTACAGAATTCAA
Found at i:83316711 original size:51 final size:51
Alignment explanation
Indices: 83316647--83316809 Score: 238
Period size: 51 Copynumber: 3.2 Consensus size: 51
83316637 ACTTCTGATC
* * * *
83316647 AGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATTTGATCAGTGATA
1 AGTGACAAATGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAGTGACA
*
83316698 AGTGACAAATGATAAGTGGTAG-CTTAGCTACTCTTATCTGATCAGTGACA
1 AGTGACAAATGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAGTGACA
* * *
83316748 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAATGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAGTGACA
*
83316799 AGTGATAAATG
1 AGTGACAAATG
83316810 TGATCAGTGT
Statistics
Matches: 101, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
50 44 0.44
51 57 0.56
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (51 bp):
AGTGACAAATGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAGTGACA
Found at i:83319011 original size:47 final size:45
Alignment explanation
Indices: 83318901--83319021 Score: 131
Period size: 47 Copynumber: 2.6 Consensus size: 45
83318891 GTTATTGTGG
*
83318901 GCTAGTGTAAGACATGTCCGGGACAT-GCATCAGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCAG-C-CATTATGAGA
*
83318947 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAG-CATTGA-GACGA
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATCAGCCATT-ATGA-GA
*
83318993 GTGCTAGTGTAAGACATGTTTGGGACATG
1 --GCTAGTGTAAGACATGTCTGGGACATG
83319022 TTTGGGACAT
Statistics
Matches: 65, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
45 6 0.09
46 14 0.22
47 27 0.42
48 18 0.28
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGGCATCAGCCATTATGAGA
Found at i:83319021 original size:11 final size:11
Alignment explanation
Indices: 83319005--83319032 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
83318995 GCTAGTGTAA
83319005 GACATGTTTGG
1 GACATGTTTGG
83319016 GACATGTTTGG
1 GACATGTTTGG
83319027 GACATG
1 GACATG
83319033 CGTCGGCTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.21, C:0.11, G:0.36, T:0.32
Consensus pattern (11 bp):
GACATGTTTGG
Found at i:83319172 original size:49 final size:49
Alignment explanation
Indices: 83319052--83319180 Score: 154
Period size: 49 Copynumber: 2.6 Consensus size: 49
83319042 CGAAATGTGT
* *
83319052 CAGTGTAAGACCATGTTTGGGACATGGCGTCGACACAGATATGTGAAAGC
1 CAGTGTAAGACCATGTATGGGACATGGCATCGACACAGATA-GTGAAAGC
* * * * *
83319102 TAGTGTAAGACCATGTCTGGGACATGGCATCGAC-CTCGGT-GATGATAGC
1 CAGTGTAAGACCATGTATGGGACATGGCATCGACAC-AGATAG-TGAAAGC
83319151 CAGTGTAAGACCATGTATGGGACATGGCAT
1 CAGTGTAAGACCATGTATGGGACATGGCAT
83319181 TGGCAACTTA
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
48 1 0.01
49 35 0.51
50 33 0.48
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (49 bp):
CAGTGTAAGACCATGTATGGGACATGGCATCGACACAGATAGTGAAAGC
Found at i:83321520 original size:116 final size:111
Alignment explanation
Indices: 83321430--83321652 Score: 262
Period size: 112 Copynumber: 2.0 Consensus size: 111
83321420 CAAATAAATC
* * * *
83321430 AAAA-ACAAATAAAATTACA-TTATAACATA-TCACATTACACT-TAAACT-AA-ACAAATAATT
1 AAAACACAAAAAAAATTACATTTATAACA-AGTCACAATA-AATATAAACTAAATACAAACAATT
* * * *
83321489 TATAACCTAATCATAAATTACTAACAAAATAACTTTAAAATAATTTAA
64 TATAACCTAATCATAAATAACTAACAAAATAACATCAAAAAAATTTAA
*
83321537 AAAACACAAAAAAAATTATATTTATAACAAGTCACAATAAATACTAAACTAAATACAAACAATTT
1 AAAACACAAAAAAAATTACATTTATAACAAGTCACAATAAATA-TAAACTAAATACAAACAATTT
* *
83321602 ATAACCTAATCATAAATAACTAACAAAATAACTTTC-AAATAATTTAA
65 ATAACCTAATCATAAATAACTAACAAAATAAC-ATCAAAAAAATTTAA
83321649 AAAA
1 AAAA
83321653 AATTATTTTC
Statistics
Matches: 101, Mismatches: 7, Indels: 11
0.85 0.06 0.09
Matches are distributed among these distances:
107 4 0.04
108 16 0.16
109 15 0.15
110 6 0.06
111 2 0.02
112 56 0.55
113 2 0.02
ACGTcount: A:0.58, C:0.14, G:0.00, T:0.28
Consensus pattern (111 bp):
AAAACACAAAAAAAATTACATTTATAACAAGTCACAATAAATATAAACTAAATACAAACAATTTA
TAACCTAATCATAAATAACTAACAAAATAACATCAAAAAAATTTAA
Found at i:83321653 original size:103 final size:101
Alignment explanation
Indices: 83321544--83322006 Score: 605
Period size: 103 Copynumber: 4.6 Consensus size: 101
83321534 TAAAAAACAC
* * * * * *
83321544 AAAAAAAATTATATTTATAACAAGTCACAATAAATACTAAACTAAATACAAACAATTTATAACCT
1 AAAAAAAATTACATTCATAAAAAATCAC-A-AAACACTAAACTAAACACAAACAATTTATAACCT
* * *
83321609 AATCATAAATAACTAACAAAATAACTTTCAAATAATTT
64 AATCATAAATTACTAACAAAATAACTATAAAATAATTT
**
83321647 AAAAAAAATTATTTTCATAAAAAATCACAATAAACACTAAACTAAACACAAACAATTTATAACCT
1 AAAAAAAATTACATTCATAAAAAATCAC-A-AAACACTAAACTAAACACAAACAATTTATAACCT
* *
83321712 AATCATAAATTACTAACAAAATAACTTTCAAATAA-TT
64 AATCATAAATTACTAACAAAATAACTATAAAATAATTT
** *
83321749 AAAAAATTTTACATTCATAAAAAATCACAAAACACTAAACTAAACAAAAACAA-TTATAACCTAA
1 AAAAAAAATTACATTCATAAAAAATCACAAAACACTAAACTAAACACAAACAATTTATAACCTAA
*
83321813 TGATAAATTACT---AAAATAACTATAAAATAATTTT
66 TCATAAATTACTAACAAAATAACTATAAAATAA-TTT
* * **
83321847 TAAAAAATTTACATTCATAAAAAATCACAAAACACTAAACTATGCACAAACAATTTATAACCTAA
1 AAAAAAAATTACATTCATAAAAAATCACAAAACACTAAACTAAACACAAACAATTTATAACCTAA
* *
83321912 TCATAAATTATTTACAAAATAACTATAAAATAATTT
66 TCATAAATTACTAACAAAATAACTATAAAATAATTT
* * *
83321948 -TAAAAAATTACATTAATAAAAAATTACAAAACACTAAACTAAACACAAACAATTTATAA
1 AAAAAAAATTACATTCATAAAAAATCACAAAACACTAAACTAAACACAAACAATTTATAA
83322007 TAATTAATAA
Statistics
Matches: 326, Mismatches: 28, Indels: 15
0.88 0.08 0.04
Matches are distributed among these distances:
96 16 0.05
98 50 0.15
99 43 0.13
100 76 0.23
101 4 0.01
102 44 0.13
103 93 0.29
ACGTcount: A:0.57, C:0.14, G:0.01, T:0.28
Consensus pattern (101 bp):
AAAAAAAATTACATTCATAAAAAATCACAAAACACTAAACTAAACACAAACAATTTATAACCTAA
TCATAAATTACTAACAAAATAACTATAAAATAATTT
Found at i:83321853 original size:100 final size:99
Alignment explanation
Indices: 83321579--83322006 Score: 578
Period size: 100 Copynumber: 4.3 Consensus size: 99
83321569 CACAATAAAT
* * * *
83321579 ACTAAACTAAATACAAACAATTTATAACCTAATCATAAATAACTAACAAAATAACTTTCAAATAA
1 ACTAAACTAAACACAAACAATTTATAACCTAATCATAAATTACT-A-AAAATAACTATAAAATAA
* * **
83321644 TTTAAAAAAAATTATTTTCATAAAAAATCACAATAAAC
64 TTTTAAAAAATTTACATTCATAAAAAATCAC-A-AAAC
* *
83321682 ACTAAACTAAACACAAACAATTTATAACCTAATCATAAATTACTAACAAAATAACTTTCAAATAA
1 ACTAAACTAAACACAAACAATTTATAACCTAATCATAAATTACT-A-AAAATAACTATAAAATAA
83321747 --TTAAAAAATTTTACATTCATAAAAAATCACAAAAC
64 TTTTAAAAAA-TTTACATTCATAAAAAATCACAAAAC
* *
83321782 ACTAAACTAAACAAAAACAA-TTATAACCTAATGATAAATTACT-AAAATAACTATAAAATAATT
1 ACTAAACTAAACACAAACAATTTATAACCTAATCATAAATTACTAAAAATAACTATAAAATAA-T
83321845 TTTAAAAAATTTACATTCATAAAAAATCACAAAAC
65 TTTAAAAAATTTACATTCATAAAAAATCACAAAAC
** *
83321880 ACTAAACTATGCACAAACAATTTATAACCTAATCATAAATTATTTACAAAATAACTATAAAATAA
1 ACTAAACTAAACACAAACAATTTATAACCTAATCATAAATTA-CTA-AAAATAACTATAAAATAA
* *
83321945 TTTTAAAAAA-TTACATTAATAAAAAATTACAAAAC
64 TTTTAAAAAATTTACATTCATAAAAAATCACAAAAC
83321980 ACTAAACTAAACACAAACAATTTATAA
1 ACTAAACTAAACACAAACAATTTATAA
83322007 TAATTAATAA
Statistics
Matches: 298, Mismatches: 19, Indels: 19
0.89 0.06 0.06
Matches are distributed among these distances:
96 16 0.05
98 43 0.14
99 50 0.17
100 72 0.24
101 18 0.06
102 36 0.12
103 63 0.21
ACGTcount: A:0.57, C:0.15, G:0.00, T:0.28
Consensus pattern (99 bp):
ACTAAACTAAACACAAACAATTTATAACCTAATCATAAATTACTAAAAATAACTATAAAATAATT
TTAAAAAATTTACATTCATAAAAAATCACAAAAC
Found at i:83321904 original size:198 final size:200
Alignment explanation
Indices: 83321546--83322006 Score: 608
Period size: 198 Copynumber: 2.3 Consensus size: 200
83321536 AAAAACACAA
* * * * * *
83321546 AAAAAATTATATTTATAACAAGTCACAATAAATACTAAACTAAATACAAACAATTTATAACCTAA
1 AAAAAATTACATTAATAAAAAATCAC-A-AAACACTAAACTAAACACAAACAATTTATAACCTAA
* * **
83321611 TCATAAATAACTAACAAAATAACTTTCAAATAATTTAAAAAAAATTATTTTCATAAAAAATCACA
64 TCATAAATAACT-A-AAAATAACTATAAAATAATTTAAAAAAAATTACATTCATAAAAAATCACA
* *
83321676 ATAAACACTAAACTAAACACAAACAATTTATAACCTAATCATAAATTACTAACAAAATAACTTTC
127 ATAAACACTAAACTAAACACAAACAATTTATAACCTAATCATAAATTACTAACAAAATAACTATA
83321741 AAATAA-TT
192 AAATAATTT
* *
83321749 AAAAAATTTTACATTCATAAAAAATCACAAAACACTAAACTAAACAAAAACAA-TTATAACCTAA
1 AAAAAA--TTACATTAATAAAAAATCACAAAACACTAAACTAAACACAAACAATTTATAACCTAA
* * * *
83321813 TGATAAATTACT-AAAATAACTATAAAATAATTTTTAAAAAATTTACATTCATAAAAAATCAC-A
64 TCATAAATAACTAAAAATAACTATAAAATAA-TTTAAAAAAAATTACATTCATAAAAAATCACAA
** * *
83321876 -AAACACTAAACTATGCACAAACAATTTATAACCTAATCATAAATTATTTACAAAATAACTATAA
128 TAAACACTAAACTAAACACAAACAATTTATAACCTAATCATAAATTACTAACAAAATAACTATAA
83321940 AATAATTTT
193 AATAA-TTT
*
83321949 AAAAAATTACATTAATAAAAAATTACAAAACACTAAACTAAACACAAACAATTTATAA
1 AAAAAATTACATTAATAAAAAATCACAAAACACTAAACTAAACACAAACAATTTATAA
83322007 TAATTAATAA
Statistics
Matches: 228, Mismatches: 24, Indels: 16
0.85 0.09 0.06
Matches are distributed among these distances:
198 105 0.46
199 23 0.10
200 35 0.15
202 21 0.09
203 27 0.12
204 1 0.00
205 16 0.07
ACGTcount: A:0.57, C:0.14, G:0.01, T:0.28
Consensus pattern (200 bp):
AAAAAATTACATTAATAAAAAATCACAAAACACTAAACTAAACACAAACAATTTATAACCTAATC
ATAAATAACTAAAAATAACTATAAAATAATTTAAAAAAAATTACATTCATAAAAAATCACAATAA
ACACTAAACTAAACACAAACAATTTATAACCTAATCATAAATTACTAACAAAATAACTATAAAAT
AATTT
Found at i:83322098 original size:4 final size:4
Alignment explanation
Indices: 83322091--83322148 Score: 56
Period size: 4 Copynumber: 15.5 Consensus size: 4
83322081 ACATACCATT
83322091 TTTC TTTC TTTC TTTC TTTC TTTC -TTC -TTC -TTC -TTC -TTC -TTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
83322133 TTTTCC TTTC TTTC TT
1 -TTT-C TTTC TTTC TT
83322149 CTCATTCCTC
Statistics
Matches: 51, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
3 18 0.35
4 27 0.53
5 5 0.10
6 1 0.02
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (4 bp):
TTTC
Found at i:83322170 original size:32 final size:32
Alignment explanation
Indices: 83322098--83322170 Score: 89
Period size: 32 Copynumber: 2.3 Consensus size: 32
83322088 ATTTTTCTTT
* *
83322098 CTTTCTTT-CTTTCTTTCTTCTTCTTCTTCTT
1 CTTTCTTTCCTTTCTTTCTTCTTCTTCCTCTC
83322129 C-TTCTTTTCCTTTCTTTCTTC-TCATTCCTCTC
1 CTTTC-TTTCCTTTCTTTCTTCTTC-TTCCTCTC
83322161 CTTTCTTTCC
1 CTTTCTTTCC
83322171 CTCTTTTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
30 3 0.08
31 6 0.17
32 24 0.67
33 3 0.08
ACGTcount: A:0.01, C:0.34, G:0.00, T:0.64
Consensus pattern (32 bp):
CTTTCTTTCCTTTCTTTCTTCTTCTTCCTCTC
Found at i:83334265 original size:46 final size:46
Alignment explanation
Indices: 83334222--83334395 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
83334212 TCATCTCGTA
83334222 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTATGTCTCGAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTATGTCTCGAT
* *
83334268 GCC-ATTGCATGTCCCAGACATGTCTTACACTAGCCCT-TGTCTCAAT
1 GCCGA-TGCATGTCCCAGACATGTCTTACACTAG-CTTATGTCTCGAT
* * * *
83334314 GCCGATGCATGTCCCAGACATGGTCTTACATTGGCTCTCATAAT-GCG--
1 GCCGATGCATGTCCCAGACAT-GTCTTACACTAGCT-T-AT-GTCTCGAT
* *
83334361 GCTGATACATGTCCCAGACATGTCTTACACTAGCT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT
83334396 CACACACGAA
Statistics
Matches: 108, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
45 1 0.01
46 71 0.66
47 33 0.31
49 2 0.02
50 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTATGTCTCGAT
Found at i:83336096 original size:65 final size:64
Alignment explanation
Indices: 83336017--83336143 Score: 209
Period size: 65 Copynumber: 2.0 Consensus size: 64
83336007 TTTCCTCCAC
* *
83336017 CGAGATACTTTTAAAAATACCTTATCACCGACTTGAAACTCAATTTCCTTTCGCTTCAAATCCG
1 CGAGATACTTTTAAAAATACCTTATCACCAACTTGAAACTCAATTTCCTTTCACTTCAAATCCG
* *
83336081 CGAGATAACTTTTAAAAATACCTTATCATCAACTTGAAACTCAATTTCCTTTCATTTCAAATC
1 CGAGAT-ACTTTTAAAAATACCTTATCACCAACTTGAAACTCAATTTCCTTTCACTTCAAATC
83336144 TGCGTAGGAT
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
64 6 0.10
65 52 0.90
ACGTcount: A:0.34, C:0.24, G:0.07, T:0.35
Consensus pattern (64 bp):
CGAGATACTTTTAAAAATACCTTATCACCAACTTGAAACTCAATTTCCTTTCACTTCAAATCCG
Found at i:83341948 original size:47 final size:47
Alignment explanation
Indices: 83341857--83341948 Score: 123
Period size: 47 Copynumber: 2.0 Consensus size: 47
83341847 AGGGTAAGGT
* * * *
83341857 GTCGATGCCATGTCCTAGACATGGTATTATACTGGCTCATATCTCAA
1 GTCGATGCCATGTCCCAGAAATGGTATTACACTGACTCATATCTCAA
*
83341904 GTCGATGCCATGTCCCAGAAATGGTCTTACACTGACT-ATCATCTC
1 GTCGATGCCATGTCCCAGAAATGGTATTACACTGACTCAT-ATCTC
83341949 GTAGCCGATG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
46 2 0.05
47 37 0.95
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.30
Consensus pattern (47 bp):
GTCGATGCCATGTCCCAGAAATGGTATTACACTGACTCATATCTCAA
Found at i:83342039 original size:46 final size:44
Alignment explanation
Indices: 83341954--83342125 Score: 141
Period size: 46 Copynumber: 3.7 Consensus size: 44
83341944 ATCTCGTAGC
* * * * * *
83341954 CGATGAATGTTCCAAACATGTCTTACATTGGCTTACGTCTCAAGGA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCCT-CGTCT-AAGGA
* * *
83342000 CGTTGCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTTAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAG-CCTCGTC-TAAGGA
* *
83342046 CGATGTCATGTCCCAGGCATGGTCTTACACTAG-CTC-TCATAATGTGG
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCCTCGTC-TAA-G-GA
83342093 CTGATGCATGTCCCAGACATGTCTTACACTAGC
1 C-GATGCATGTCCCAGACATGTCTTACACTAGC
83342126 TCACACACGA
Statistics
Matches: 103, Mismatches: 15, Indels: 15
0.77 0.11 0.11
Matches are distributed among these distances:
45 5 0.05
46 51 0.50
47 31 0.30
48 16 0.16
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (44 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCCTCGTCTAAGGA
Found at i:83342103 original size:47 final size:44
Alignment explanation
Indices: 83342003--83342127 Score: 153
Period size: 47 Copynumber: 2.7 Consensus size: 44
83341993 TCAAGGACGT
*
83342003 TGCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTTAATGCCGA
1 TGCATGTCCCAGACATGTCTTACACTAG--CTCGTCATAATGCCGA
* *
83342049 TGTCATGTCCCAGGCATGGTCTTACACTAGCTC-TCATAATGTGGCTGA
1 TG-CATGTCCCAGACAT-GTCTTACACTAGCTCGTCATAA--T-GCCGA
83342097 TGCATGTCCCAGACATGTCTTACACTAGCTC
1 TGCATGTCCCAGACATGTCTTACACTAGCTC
83342128 ACACACGAAT
Statistics
Matches: 70, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
45 5 0.07
46 20 0.29
47 27 0.39
48 18 0.26
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.30
Consensus pattern (44 bp):
TGCATGTCCCAGACATGTCTTACACTAGCTCGTCATAATGCCGA
Found at i:83359218 original size:27 final size:27
Alignment explanation
Indices: 83359188--83359365 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
83359178 ATATCGAGTC
* *
83359188 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
83359215 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
83359242 CGCACACTTAGTGCCACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
83359270 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
83359297 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
83359324 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
83359351 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
83359366 GTACAATTTA
Statistics
Matches: 131, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
27 105 0.80
28 26 0.20
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:83359327 original size:82 final size:81
Alignment explanation
Indices: 83359209--83359364 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
83359199 TGCTATATAA
*
83359209 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCCACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
83359274 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
83359291 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
83359355 CACTTAGTGC
65 CACTTAGTGC
83359365 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:83367316 original size:79 final size:78
Alignment explanation
Indices: 83367205--83367428 Score: 274
Period size: 79 Copynumber: 2.8 Consensus size: 78
83367195 GCTACTCGTT
* * *
83367205 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
83367270 ATTGAGTAACTCGCA
65 ATT-AGTAACTCGCA
*
83367285 CAAATGCCTTCGGGCTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCAG
1 CAAATGCCTTCGGGCTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC-G
* *
83367348 AATTAGTATCTCGCA
64 GATTAGTAACTCGCA
* * * * *
83367363 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
83367427 GA
64 GA
83367429 CATCATTCAA
Statistics
Matches: 125, Mismatches: 13, Indels: 13
0.83 0.09 0.09
Matches are distributed among these distances:
78 31 0.25
79 63 0.50
80 31 0.25
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
TTAGTAACTCGCA
Found at i:83367322 original size:39 final size:39
Alignment explanation
Indices: 83367205--83367428 Score: 267
Period size: 40 Copynumber: 5.7 Consensus size: 39
83367195 GCTACTCGTT
* *
83367205 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCA
*
83367245 CAAATGCCTTCGGGACTTAACCCGGATTGAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-AGTAACTCGCA
*
83367285 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-ATTAGTAACTCGCA
* *
83367324 CAAATGCCTTCGGG-CTTAGCCCAGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GGATTAGTAACTCGCA
* * * *
83367363 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TAGTAAC-TCGCA
83367404 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
83367429 CATCATTCAA
Statistics
Matches: 163, Mismatches: 13, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
38 2 0.01
39 70 0.43
40 80 0.49
41 11 0.07
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:83370443 original size:50 final size:53
Alignment explanation
Indices: 83370336--83370450 Score: 155
Period size: 56 Copynumber: 2.2 Consensus size: 53
83370326 ATTTGGGTAA
*
83370336 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCA-TGAG--TATG
*
83370392 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCA-C-TGAG-ATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATGAGTATG
*
83370442 AGAAGTCCC
1 AGAGGTCCC
83370451 CCATAGACAT
Statistics
Matches: 56, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
50 11 0.20
53 4 0.07
55 1 0.02
56 40 0.71
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (53 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATGAGTATG
Found at i:83380614 original size:9 final size:9
Alignment explanation
Indices: 83380600--83380631 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
83380590 TAAGGTTTAG
83380600 TATGGTTAA
1 TATGGTTAA
83380609 TATGGTTAA
1 TATGGTTAA
*
83380618 TAAGGTTAA
1 TATGGTTAA
83380627 TATGG
1 TATGG
83380632 AGTCTAATTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.34, C:0.00, G:0.25, T:0.41
Consensus pattern (9 bp):
TATGGTTAA
Found at i:83381180 original size:16 final size:16
Alignment explanation
Indices: 83381156--83381187 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
83381146 ATATTGATAC
*
83381156 AAAATTTTGAAAATTT
1 AAAAGTTTGAAAATTT
83381172 AAAAGTTTGAAAATTT
1 AAAAGTTTGAAAATTT
83381188 TACAAATCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (16 bp):
AAAAGTTTGAAAATTT
Found at i:83384023 original size:21 final size:21
Alignment explanation
Indices: 83383978--83384023 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
83383968 CACGGCTGGA
* *
83383978 CACACGGGCATCTGGGACAGT
1 CACACGGGCATATGGGACAGC
*
83383999 CACACGGGCATATGGGATAGC
1 CACACGGGCATATGGGACAGC
83384020 CACA
1 CACA
83384024 TGACCATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.28, G:0.30, T:0.13
Consensus pattern (21 bp):
CACACGGGCATATGGGACAGC
Found at i:83390731 original size:50 final size:50
Alignment explanation
Indices: 83390616--83390986 Score: 455
Period size: 50 Copynumber: 7.4 Consensus size: 50
83390606 TGCGAAAGCT
* * * * *
83390616 ATGTCCCAGACATAGTCTTACATGGGATGTTTTC-TGTAC--TGCCAATGCC
1 ATGTCCCAGACATGGTCTTACATGGGA-CTTCTCATAT-CGGTGCCAACGCC
* * * * * * *
83390665 ATATCGCAGATATGGTCTTACATGGGAGTTCTCATATTGGTGCCCATGCC
1 ATGTCCCAGACATGGTCTTACATGGGACTTCTCATATCGGTGCCAACGCC
** * *
83390715 ATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAACGCC
1 ATGTCCCAGACATGGTCTTACATGGGACTTCTCATATCGGTGCCAACGCC
*
83390765 ATGTCCCAGACATGGTCTTACAAGGGA-TCTCTCATATCGGTGCCAACGCC
1 ATGTCCCAGACATGGTCTTACATGGGACT-TCTCATATCGGTGCCAACGCC
* *
83390815 ATGTCCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCC
1 ATGT-CCCAGACATGGTCTTACATGGGACTTCTCATATCGGTGCCAACGCC
*
83390866 ATGTCCCAGACATGGTCTTACAAGGGA-TCTCTCATATCGGTGCCAACGCC
1 ATGTCCCAGACATGGTCTTACATGGGACT-TCTCATATCGGTGCCAACGCC
* *
83390916 ATGTCCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCC
1 ATGT-CCCAGACATGGTCTTACATGGGACTTCTCATATCGGTGCCAACGCC
83390967 ATGTCCCAGACATGGTCTTA
1 ATGTCCCAGACATGGTCTTA
83390987 TACGAGATCG
Statistics
Matches: 281, Mismatches: 32, Indels: 17
0.85 0.10 0.05
Matches are distributed among these distances:
48 5 0.02
49 25 0.09
50 159 0.57
51 92 0.33
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.26
Consensus pattern (50 bp):
ATGTCCCAGACATGGTCTTACATGGGACTTCTCATATCGGTGCCAACGCC
Found at i:83390858 original size:151 final size:151
Alignment explanation
Indices: 83390655--83390986 Score: 495
Period size: 151 Copynumber: 2.2 Consensus size: 151
83390645 TTTTCTGTAC
* * * * ** * * *
83390655 TGCCAATGCCATATCGCAGATATGGTCTTACATGGGAGTTCTCATATTGGTGCCCATGCCATGTC
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATGTC
** *
83390720 CCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAACGCCATGT-CCCAGACATGGTCTT
66 CCAGACATGGTCTTACAAGGGACCTCTCATATCGGTGCCAACGCCATGTCCCCAGACATGGTCTT
*
83390784 ACAAGGGATCTCTCATATCGG
131 ACAAGGGACCTCTCATATCGG
*
83390805 TGCCAACGCCATGTCCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGT
1 TGCCAACGCCATGT-CCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATGT
*
83390870 CCCAGACATGGTCTTACAAGGGATCTCTCATATCGGTGCCAACGCCATGTCCCCAGACATGGTCT
65 CCCAGACATGGTCTTACAAGGGACCTCTCATATCGGTGCCAACGCCATGTCCCCAGACATGGTCT
* *
83390935 TACATGGGACCTCTCATCTCGG
130 TACAAGGGACCTCTCATATCGG
83390957 TGCCAACGCCATGTCCCAGACATGGTCTTA
1 TGCCAACGCCATGTCCCAGACATGGTCTTA
83390987 TACGAGATCG
Statistics
Matches: 163, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
150 12 0.07
151 104 0.64
152 47 0.29
ACGTcount: A:0.21, C:0.31, G:0.23, T:0.25
Consensus pattern (151 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATGTC
CCAGACATGGTCTTACAAGGGACCTCTCATATCGGTGCCAACGCCATGTCCCCAGACATGGTCTT
ACAAGGGACCTCTCATATCGG
Found at i:83390861 original size:101 final size:101
Alignment explanation
Indices: 83390655--83390986 Score: 551
Period size: 101 Copynumber: 3.3 Consensus size: 101
83390645 TTTTCTGTAC
* * * * * * * *
83390655 TGCCAATGCCATATCGCAGATATGGTCTTACATGGGAGT-TCTCATATTGGTGCCCATGCCATGT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAAGGGA-TCTCTCATATCGGTGCCAACGCCATGT
**
83390719 -CCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
65 CCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
83390755 TGCCAACGCCATGTCCCAGACATGGTCTTACAAGGGATCTCTCATATCGGTGCCAACGCCATGTC
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAAGGGATCTCTCATATCGGTGCCAACGCCATGTC
83390820 CCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
66 CCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
83390856 TGCCAACGCCATGTCCCAGACATGGTCTTACAAGGGATCTCTCATATCGGTGCCAACGCCATGTC
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAAGGGATCTCTCATATCGGTGCCAACGCCATGTC
83390921 CCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
66 CCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
83390957 TGCCAACGCCATGTCCCAGACATGGTCTTA
1 TGCCAACGCCATGTCCCAGACATGGTCTTA
83390987 TACGAGATCG
Statistics
Matches: 220, Mismatches: 10, Indels: 3
0.94 0.04 0.01
Matches are distributed among these distances:
99 1 0.00
100 54 0.25
101 165 0.75
ACGTcount: A:0.21, C:0.31, G:0.23, T:0.25
Consensus pattern (101 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACAAGGGATCTCTCATATCGGTGCCAACGCCATGTC
CCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:83392718 original size:40 final size:40
Alignment explanation
Indices: 83392672--83392896 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
83392662 CTTGCGCAAG
* * * *
83392672 GCCTTCGGGTCTTAGCCTGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
83392712 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
83392752 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
83392792 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
83392832 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
83392873 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
83392897 CATTCGAATA
Statistics
Matches: 158, Mismatches: 24, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 128 0.81
41 29 0.18
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:83392767 original size:80 final size:79
Alignment explanation
Indices: 83392636--83392896 Score: 285
Period size: 80 Copynumber: 3.3 Consensus size: 79
83392626 CTCAAGTAAT
* * * * * * * *
83392636 CTTCGGGATTTAG-CCGGATATAACTACTTGCGC-AAGGCCTTCGGGTCTTAGCCTGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCC-GGATATAGT
*
83392699 CACTAGCATAAATGC
65 CACTAGCACAAATGC
* * *
83392714 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAG-CCGGATATAG
*
83392778 TCGCTAGCACAAATGC
64 TCACTAGCACAAATGC
* * * * *
83392794 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAG-CCGGATATAGT
*
83392859 CACCTAGCACAAAAGC
65 CA-CTAGCACAAATGC
83392875 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
83392897 CATTCGAATA
Statistics
Matches: 153, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
78 12 0.08
79 15 0.10
80 91 0.59
81 35 0.23
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCGGATATAGTC
ACTAGCACAAATGC
Found at i:83399080 original size:18 final size:18
Alignment explanation
Indices: 83399057--83399093 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
83399047 TTGAGTGTTC
83399057 TTTGACAACTCAATCCTA
1 TTTGACAACTCAATCCTA
83399075 TTTGACAACTCAATCCTA
1 TTTGACAACTCAATCCTA
83399093 T
1 T
83399094 CTTTTTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.27, G:0.05, T:0.35
Consensus pattern (18 bp):
TTTGACAACTCAATCCTA
Found at i:83400436 original size:16 final size:16
Alignment explanation
Indices: 83400396--83400429 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
83400386 AAAATTTTTG
*
83400396 AAAAAGAATTATTTTAT
1 AAAAA-AATTATTTAAT
83400413 AAAAAAATTATTTAAT
1 AAAAAAATTATTTAAT
83400429 A
1 A
83400430 TGAAAATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (16 bp):
AAAAAAATTATTTAAT
Found at i:83401645 original size:52 final size:52
Alignment explanation
Indices: 83401562--83401663 Score: 150
Period size: 52 Copynumber: 2.0 Consensus size: 52
83401552 ATGCTTTAGC
* *
83401562 ACACTTAAACTCAGGTCTTTTTACATCGACAACAATGCCCATGTCAATCAGT
1 ACACTTAAACTCAGGTCTTTTTACATCGACAACAATACCCATATCAATCAGT
* * * *
83401614 ACACTTGAACTTAGGTCTTTTTACATTGACAACAATACTCATATCAATCA
1 ACACTTAAACTCAGGTCTTTTTACATCGACAACAATACCCATATCAATCA
83401664 AGCTAAAACT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.34, C:0.25, G:0.10, T:0.31
Consensus pattern (52 bp):
ACACTTAAACTCAGGTCTTTTTACATCGACAACAATACCCATATCAATCAGT
Found at i:83405543 original size:16 final size:16
Alignment explanation
Indices: 83405524--83405556 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
83405514 CTTGCAATTC
83405524 GACAGGCTCACACTTT
1 GACAGGCTCACACTTT
*
83405540 GACAGGCTCGCACTTT
1 GACAGGCTCACACTTT
83405556 G
1 G
83405557 CTTACTGTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.30, G:0.24, T:0.24
Consensus pattern (16 bp):
GACAGGCTCACACTTT
Found at i:83405743 original size:25 final size:24
Alignment explanation
Indices: 83405715--83405795 Score: 81
Period size: 25 Copynumber: 3.2 Consensus size: 24
83405705 CTGAGCTCAT
*
83405715 AGCTCTCACTTCTCGCTAAGCTTGC
1 AGCT-TCACTTCTTGCTAAGCTTGC
* *
83405740 AGCTTTGACATCTTGCTAAGCTTGC
1 AGC-TTCACTTCTTGCTAAGCTTGC
* *
83405765 AGCTTGCACATTTTTGCTGAGCTTGC
1 AGCTT-CAC-TTCTTGCTAAGCTTGC
83405791 AGCTT
1 AGCTT
83405796 GCACATTGGA
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
24 2 0.04
25 25 0.54
26 19 0.41
ACGTcount: A:0.17, C:0.27, G:0.20, T:0.36
Consensus pattern (24 bp):
AGCTTCACTTCTTGCTAAGCTTGC
Found at i:83405788 original size:26 final size:26
Alignment explanation
Indices: 83405724--83405802 Score: 108
Period size: 26 Copynumber: 3.1 Consensus size: 26
83405714 TAGCTCTCAC
*
83405724 TTCTCGCTAAGCTTGCAGCTTTG-ACA
1 TTCTTGCTAAGCTTGCAGC-TTGCACA
83405750 -TCTTGCTAAGCTTGCAGCTTGCACA
1 TTCTTGCTAAGCTTGCAGCTTGCACA
* *
83405775 TTTTTGCTGAGCTTGCAGCTTGCACA
1 TTCTTGCTAAGCTTGCAGCTTGCACA
83405801 TT
1 TT
83405803 GGAAAGCTCA
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
24 3 0.06
25 20 0.42
26 25 0.52
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.37
Consensus pattern (26 bp):
TTCTTGCTAAGCTTGCAGCTTGCACA
Found at i:83405961 original size:65 final size:65
Alignment explanation
Indices: 83405885--83406006 Score: 208
Period size: 65 Copynumber: 1.9 Consensus size: 65
83405875 GAGTTGATGC
* *
83405885 TGTCTTTTCTACAAGCAGTCCTTAATGACATGCTTGTGTTTTGACAGCTTCTTTCTTGCTGTTGT
1 TGTCTTCTCTACAAGCAGTCCTCAATGACATGCTTGTGTTTTGACAGCTTCTTTCTTGCTGTTGT
**
83405950 TGTCTTCTCTACAAGCAGTCCTCAATGACATGCTTGTGTTTTGACATTTTCTTTCTT
1 TGTCTTCTCTACAAGCAGTCCTCAATGACATGCTTGTGTTTTGACAGCTTCTTTCTT
83406007 TTTAACAAAC
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
65 53 1.00
ACGTcount: A:0.16, C:0.21, G:0.16, T:0.46
Consensus pattern (65 bp):
TGTCTTCTCTACAAGCAGTCCTCAATGACATGCTTGTGTTTTGACAGCTTCTTTCTTGCTGTTGT
Found at i:83406742 original size:4 final size:4
Alignment explanation
Indices: 83406735--83406792 Score: 107
Period size: 4 Copynumber: 14.5 Consensus size: 4
83406725 ATATGCATGC
83406735 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
*
83406783 ATGT GTGT AT
1 ATGT ATGT AT
83406793 ATATATTAGC
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 52 1.00
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:83408766 original size:34 final size:34
Alignment explanation
Indices: 83408719--83408793 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 34
83408709 TCGTTTTTAA
* *
83408719 TAGGGTTAGGGTTTTGTTTATTGAAATTAGGATT
1 TAGGGTTAGGGTTTTATTTATTGAAAGTAGGATT
* *
83408753 TAGGGTTCA-GGTTTTATTTATTTAAAGTAGGGTT
1 TAGGGTT-AGGGTTTTATTTATTGAAAGTAGGATT
83408787 TAGGGTT
1 TAGGGTT
83408794 TTTTTAGATT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
34 35 0.97
35 1 0.03
ACGTcount: A:0.23, C:0.01, G:0.29, T:0.47
Consensus pattern (34 bp):
TAGGGTTAGGGTTTTATTTATTGAAAGTAGGATT
Found at i:83410702 original size:53 final size:53
Alignment explanation
Indices: 83410593--83410702 Score: 139
Period size: 53 Copynumber: 2.1 Consensus size: 53
83410583 TTGGATTCGG
* ** * * *
83410593 GTGATTTAGAAGTGGGGAATGAGTTTTCCTCTAAAGATGGCTTTGTCGCTGTA
1 GTGATTTAGAAGTGGGGAAAGAGTTTTCAACTAAAGATGGCTTTGTCACCGCA
* * *
83410646 GTGATTTAGAAGTGGGTAAAGAGTTTTCAACTAAAGATGGTTTTGTTACCGCA
1 GTGATTTAGAAGTGGGGAAAGAGTTTTCAACTAAAGATGGCTTTGTCACCGCA
83410699 GTGA
1 GTGA
83410703 AGCGATATAG
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.26, C:0.10, G:0.29, T:0.35
Consensus pattern (53 bp):
GTGATTTAGAAGTGGGGAAAGAGTTTTCAACTAAAGATGGCTTTGTCACCGCA
Found at i:83412011 original size:25 final size:26
Alignment explanation
Indices: 83411983--83412055 Score: 64
Period size: 25 Copynumber: 2.9 Consensus size: 26
83411973 AGAGTTTACA
*
83411983 GATTCT-CAACTCGTATA-AGCTTATC
1 GATTCTACAACTCGTA-AGAGCATATC
*
83412008 GATT-TACAGCTCGTAAGAGCATATC
1 GATTCTACAACTCGTAAGAGCATATC
* * *
83412033 GATTC-ATAGCTCGTATGAGCATA
1 GATTCTACAACTCGTAAGAGCATA
83412056 CATGTACAGG
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
24 2 0.05
25 39 0.95
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32
Consensus pattern (26 bp):
GATTCTACAACTCGTAAGAGCATATC
Found at i:83420069 original size:27 final size:27
Alignment explanation
Indices: 83420039--83420216 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
83420029 ATATTGAGCC
* *
83420039 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
83420066 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
83420093 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
83420121 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
83420148 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
83420175 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
83420202 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
83420217 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:83420151 original size:55 final size:54
Alignment explanation
Indices: 83420039--83420216 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
83420029 ATATTGAGCC
* * * * *
83420039 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
83420093 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
83420148 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
83420202 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
83420217 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:83421428 original size:1 final size:1
Alignment explanation
Indices: 83421422--83421453 Score: 64
Period size: 1 Copynumber: 32.0 Consensus size: 1
83421412 GAATGAACTC
83421422 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
83421454 CTTTCTTCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:83422996 original size:25 final size:25
Alignment explanation
Indices: 83422968--83423095 Score: 104
Period size: 25 Copynumber: 5.2 Consensus size: 25
83422958 TAGCTGGTGA
83422968 GAGCTTACCGATTCTCAGCTCGTAT
1 GAGCTTACCGATTCTCAGCTCGTAT
* * * *
83422993 GAGCATATCGATT-GCAGCTTGTGA-
1 GAGCTTACCGATTCTCAGCTCGT-AT
* *
83423017 GAGCTTACCAATTCTCAGCTTGTAT
1 GAGCTTACCGATTCTCAGCTCGTAT
83423042 GAGCTTACCGATT-TACAGCTCGTGA-
1 GAGCTTACCGATTCT-CAGCTCGT-AT
* * *
83423067 GAGCATATCGATTCAT-AGCTAGTAT
1 GAGCTTACCGATTC-TCAGCTCGTAT
83423092 GAGC
1 GAGC
83423096 ATACATGTAC
Statistics
Matches: 82, Mismatches: 13, Indels: 16
0.74 0.12 0.14
Matches are distributed among these distances:
24 20 0.24
25 60 0.73
26 1 0.01
27 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (25 bp):
GAGCTTACCGATTCTCAGCTCGTAT
Found at i:83423025 original size:49 final size:49
Alignment explanation
Indices: 83422953--83423099 Score: 170
Period size: 49 Copynumber: 3.0 Consensus size: 49
83422943 AGGGATTACT
* * * *
83422953 GATTGTAGCTGGTGAGAGCTTACCGATTCTCAGCTCGTATGAGCATATC
1 GATTGCAGCTCGTGAGAGCTTACCGATTCTCAGCTAGTATGAGCATACC
* * * *
83423002 GATTGCAGCTTGTGAGAGCTTACCAATTCTCAGCTTGTATGAGCTTACC
1 GATTGCAGCTCGTGAGAGCTTACCGATTCTCAGCTAGTATGAGCATACC
* * *
83423051 GATTTACAGCTCGTGAGAGCATATCGATTCAT-AGCTAGTATGAGCATAC
1 GA-TTGCAGCTCGTGAGAGCTTACCGATTC-TCAGCTAGTATGAGCATAC
83423100 ATGTACAGGA
Statistics
Matches: 83, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
49 45 0.54
50 37 0.45
51 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (49 bp):
GATTGCAGCTCGTGAGAGCTTACCGATTCTCAGCTAGTATGAGCATACC
Found at i:83427961 original size:78 final size:75
Alignment explanation
Indices: 83427874--83428049 Score: 199
Period size: 78 Copynumber: 2.3 Consensus size: 75
83427864 AAATTATATA
* * * * *
83427874 AATTGAATTAAAGTTATGAATTTTATATATTTATATGTGAGGTTCGAATATATATGTATATACAT
1 AATTAAATTAAAG-TATGAATTTTACATATGTATATGTGAGATTCG-A-ATAGATGTATATACAT
* * *
83427939 GTATAAGTTCTTG
63 ATACAAGTACTTG
* *
83427952 AATTAAATTAAAGGTATGAATTTTACATATGTATGTGTGTGATTCGAATAGATGTATATACATAT
1 AATTAAATTAAA-GTATGAATTTTACATATGTATATGTGAGATTCGAATAGATGTATATACATAT
83428017 ACAAGTACTTG
65 ACAAGTACTTG
* *
83428028 AGTTGAATTTAAAGTATGAATT
1 AATT-AAATTAAAGTATGAATT
83428050 GTAAATACTT
Statistics
Matches: 84, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
76 37 0.44
77 8 0.10
78 38 0.45
79 1 0.01
ACGTcount: A:0.38, C:0.05, G:0.16, T:0.41
Consensus pattern (75 bp):
AATTAAATTAAAGTATGAATTTTACATATGTATATGTGAGATTCGAATAGATGTATATACATATA
CAAGTACTTG
Found at i:83428045 original size:76 final size:77
Alignment explanation
Indices: 83427874--83428049 Score: 212
Period size: 76 Copynumber: 2.3 Consensus size: 77
83427864 AAATTATATA
* * * *
83427874 AATTGAATTAAAGTTATGAATTTTATATATTTATATGTGAGGTTCGAATATATATGTATATACAT
1 AATTGAATTAAAG-TATGAATTTTACATATGTATATGTGAGATTCGAATATAGATGTATATACAT
* * *
83427939 GTATAAGTTCTTG
65 ATACAAGTACTTG
* * *
83427952 AATTAAATTAAAGGTATGAATTTTACATATGTATGTGTGTGATTCG-A-ATAGATGTATATACAT
1 AATTGAATTAAA-GTATGAATTTTACATATGTATATGTGAGATTCGAATATAGATGTATATACAT
83428015 ATACAAGTACTTG
65 ATACAAGTACTTG
*
83428028 AGTTGAATTTAAAGTATGAATT
1 AATTGAA-TTAAAGTATGAATT
83428050 GTAAATACTT
Statistics
Matches: 84, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
76 39 0.46
77 6 0.07
78 38 0.45
79 1 0.01
ACGTcount: A:0.38, C:0.05, G:0.16, T:0.41
Consensus pattern (77 bp):
AATTGAATTAAAGTATGAATTTTACATATGTATATGTGAGATTCGAATATAGATGTATATACATA
TACAAGTACTTG
Found at i:83428548 original size:33 final size:32
Alignment explanation
Indices: 83428394--83428635 Score: 212
Period size: 33 Copynumber: 7.4 Consensus size: 32
83428384 ATTTATATCT
83428394 TATTTGATAAGTATTTATATGCATTCGGTTAT-A-
1 TATTTGAT-AGTA--TATATGCATTCGGTTATAAG
** * *
83428427 TACCTTTGA-AGCGTATATGCTTTCGATTATAAG
1 TA--TTTGATAGTATATATGCATTCGGTTATAAG
83428460 TATTTGATAGGTATATATATGCATTCGGTTAT-A-
1 TATTTGATA-G--TATATATGCATTCGGTTATAAG
* *
83428493 TACCTTTGAT-GTGTATATGCATTCGATTATAAG
1 TA--TTTGATAGTATATATGCATTCGGTTATAAG
*
83428526 TATTTGATAGGTATATATGCATTCGGTTGTATA-
1 TATTTGATA-GTATATATGCATTCGGTTATA-AG
* *
83428559 CATTTGAT-GTGTATATGCATTCGGTTATAAG
1 TATTTGATAGTATATATGCATTCGGTTATAAG
*
83428590 TAGTTGATAAGTATATATGCATTCGGTTATAAG
1 TATTTGAT-AGTATATATGCATTCGGTTATAAG
83428623 TATTTGATGAGTA
1 TATTTGAT-AGTA
83428636 GATACATACA
Statistics
Matches: 170, Mismatches: 21, Indels: 36
0.75 0.09 0.16
Matches are distributed among these distances:
30 1 0.01
31 68 0.40
32 3 0.02
33 70 0.41
34 2 0.01
35 26 0.15
ACGTcount: A:0.29, C:0.08, G:0.19, T:0.43
Consensus pattern (32 bp):
TATTTGATAGTATATATGCATTCGGTTATAAG
Found at i:83428574 original size:64 final size:64
Alignment explanation
Indices: 83428394--83428620 Score: 337
Period size: 64 Copynumber: 3.5 Consensus size: 64
83428384 ATTTATATCT
* * *
83428394 TATTTGATAAGTATTTATATGCATTCGGTTATATACCTTTGAAGCGTATATGCTTTCGATTATAA
1 TATTTGATAAGTA--TATATGCATTCGGTTATATACCTTTGATGTGTATATGCATTCGATTATAA
83428459 G
64 G
*
83428460 TATTTGATAGGTATATATATGCATTCGGTTATATACCTTTGATGTGTATATGCATTCGATTATAA
1 TATTTGATAAG--TATATATGCATTCGGTTATATACCTTTGATGTGTATATGCATTCGATTATAA
83428525 G
64 G
* * * *
83428526 TATTTGATAGGTATATATGCATTCGGTTGTATACATTTGATGTGTATATGCATTCGGTTATAAG
1 TATTTGATAAGTATATATGCATTCGGTTATATACCTTTGATGTGTATATGCATTCGATTATAAG
*
83428590 TAGTTGATAAGTATATATGCATTCGGTTATA
1 TATTTGATAAGTATATATGCATTCGGTTATA
83428621 AGTATTTGAT
Statistics
Matches: 149, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
64 78 0.52
66 69 0.46
68 2 0.01
ACGTcount: A:0.29, C:0.09, G:0.19, T:0.44
Consensus pattern (64 bp):
TATTTGATAAGTATATATGCATTCGGTTATATACCTTTGATGTGTATATGCATTCGATTATAAG
Found at i:83428597 original size:31 final size:31
Alignment explanation
Indices: 83428409--83428631 Score: 195
Period size: 31 Copynumber: 6.9 Consensus size: 31
83428399 GATAAGTATT
* **
83428409 TATATGCATTCGGTTAT-A-TACCTTTGAAGCG
1 TATATGCATTCGGTTATAAGTA--TTTGATGTA
* *
83428440 TATATGCTTTCGATTATAAGTATTTGATAGGTATA
1 TATATGCATTCGGTTATAAGTATTTGAT--G--TA
*
83428475 TATATGCATTCGGTTAT-A-TACCTTTGATGTG
1 TATATGCATTCGGTTATAAGTA--TTTGATGTA
*
83428506 TATATGCATTCGATTATAAGTATTTGATAGGTA
1 TATATGCATTCGGTTATAAGTATTTGAT--GTA
* * *
83428539 TATATGCATTCGGTTGTATA-CATTTGATGTG
1 TATATGCATTCGGTTATA-AGTATTTGATGTA
*
83428570 TATATGCATTCGGTTATAAGTAGTTGATAAGTA
1 TATATGCATTCGGTTATAAGTATTTGAT--GTA
83428603 TATATGCATTCGGTTATAAGTATTTGATG
1 TATATGCATTCGGTTATAAGTATTTGATG
83428632 AGTAGATACA
Statistics
Matches: 157, Mismatches: 19, Indels: 32
0.75 0.09 0.15
Matches are distributed among these distances:
30 1 0.01
31 69 0.44
32 2 0.01
33 62 0.39
34 2 0.01
35 21 0.13
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.43
Consensus pattern (31 bp):
TATATGCATTCGGTTATAAGTATTTGATGTA
Found at i:83434024 original size:19 final size:18
Alignment explanation
Indices: 83434000--83434092 Score: 54
Period size: 20 Copynumber: 5.2 Consensus size: 18
83433990 ATTACAAAAT
*
83434000 AATTCAAAATCATTTTTAA
1 AATTCAAAAT-ATTTATAA
*
83434019 AATTCAGAATATTTATAAAA
1 AATTCAAAATATTTAT--AA
*
83434039 AATT-AAAA-A-TTAAAA
1 AATTCAAAATATTTATAA
*
83434054 AATTAAAAATATATATATAA
1 AATTCAAAATAT-T-TATAA
83434074 AAGTT-AAAAT-TTTA-AA
1 AA-TTCAAAATATTTATAA
83434090 AAT
1 AAT
83434093 GTTCTAAAAT
Statistics
Matches: 61, Mismatches: 5, Indels: 20
0.71 0.06 0.23
Matches are distributed among these distances:
15 7 0.11
16 8 0.13
17 6 0.10
18 7 0.11
19 14 0.23
20 17 0.28
21 2 0.03
ACGTcount: A:0.59, C:0.03, G:0.02, T:0.35
Consensus pattern (18 bp):
AATTCAAAATATTTATAA
Found at i:83434037 original size:18 final size:19
Alignment explanation
Indices: 83434000--83434038 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
83433990 ATTACAAAAT
*
83434000 AATTCAAAATCATTTTTAA
1 AATTCAAAATCATTTATAA
*
83434019 AATTCAGAAT-ATTTATAA
1 AATTCAAAATCATTTATAA
83434037 AA
1 AA
83434039 AATTAAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.51, C:0.08, G:0.03, T:0.38
Consensus pattern (19 bp):
AATTCAAAATCATTTATAA
Found at i:83434047 original size:8 final size:8
Alignment explanation
Indices: 83434034--83434062 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
83434024 AGAATATTTA
83434034 TAAAAAAT
1 TAAAAAAT
83434042 T-AAAAAT
1 TAAAAAAT
83434049 TAAAAAAT
1 TAAAAAAT
83434057 TAAAAA
1 TAAAAA
83434063 TATATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
TAAAAAAT
Found at i:83434054 original size:15 final size:15
Alignment explanation
Indices: 83434034--83434063 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
83434024 AGAATATTTA
83434034 TAAAAAATTAAAAAT
1 TAAAAAATTAAAAAT
83434049 TAAAAAATTAAAAAT
1 TAAAAAATTAAAAAT
83434064 ATATATATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (15 bp):
TAAAAAATTAAAAAT
Found at i:83434057 original size:35 final size:36
Alignment explanation
Indices: 83434017--83434092 Score: 91
Period size: 36 Copynumber: 2.1 Consensus size: 36
83434007 AATCATTTTT
* * *
83434017 AAAATTCAGAATATTTATA-AAAAATTAAAAATTAA
1 AAAATTAAAAATATATATATAAAAATTAAAAATTAA
* * *
83434052 AAAATTAAAAATATATATATAAAAGTTAAAATTTTA
1 AAAATTAAAAATATATATATAAAAATTAAAAATTAA
83434088 AAAAT
1 AAAAT
83434093 GTTCTAAAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
35 16 0.47
36 18 0.53
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (36 bp):
AAAATTAAAAATATATATATAAAAATTAAAAATTAA
Found at i:83436912 original size:4 final size:4
Alignment explanation
Indices: 83436903--83436927 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
83436893 ACCAAATCTT
83436903 CATA CATA CATA CATA CATA CATA C
1 CATA CATA CATA CATA CATA CATA C
83436928 CACCAAGCAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.48, C:0.28, G:0.00, T:0.24
Consensus pattern (4 bp):
CATA
Found at i:83439857 original size:22 final size:22
Alignment explanation
Indices: 83439829--83439873 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
83439819 CGTTCTGGAG
83439829 TTAGCGTGCATTCCAGAATACA
1 TTAGCGTGCATTCCAGAATACA
83439851 TTAGCGTGCATTCCAGAATACA
1 TTAGCGTGCATTCCAGAATACA
83439873 T
1 T
83439874 GCCATGGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (22 bp):
TTAGCGTGCATTCCAGAATACA
Found at i:83440174 original size:18 final size:18
Alignment explanation
Indices: 83440147--83440186 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
83440137 CAGGTGCGTT
*
83440147 TCCTAGCCCTTATATGTA
1 TCCTAACCCTTATATGTA
*
83440165 TCCTAACCCTTATGTGTA
1 TCCTAACCCTTATATGTA
83440183 TCCT
1 TCCT
83440187 TTTCCGAGTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.20, C:0.30, G:0.10, T:0.40
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:83440643 original size:25 final size:25
Alignment explanation
Indices: 83440615--83440731 Score: 113
Period size: 25 Copynumber: 4.9 Consensus size: 25
83440605 TATTTTGATA
83440615 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
* *
83440640 TTATTTGAAGTAATAAAATAGAAAT
1 TTATTTGATGTAATAAAATAGAAGT
* ** *
83440665 TT-TTTTA-GT--T-ATTTTG-A-T
1 TTATTTGATGTAATAAAATAGAAGT
*
83440683 ATTATTTGATATAATAAAATAGAAGT
1 -TTATTTGATGTAATAAAATAGAAGT
83440709 TTATTTGATGTAATAAAATAGAA
1 TTATTTGATGTAATAAAATAGAA
83440732 TTTTTTTTAG
Statistics
Matches: 72, Mismatches: 12, Indels: 16
0.72 0.12 0.16
Matches are distributed among these distances:
18 1 0.01
19 3 0.04
20 7 0.10
21 2 0.03
23 3 0.04
24 7 0.10
25 48 0.67
26 1 0.01
ACGTcount: A:0.44, C:0.00, G:0.13, T:0.44
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:83440687 original size:69 final size:69
Alignment explanation
Indices: 83440605--83440775 Score: 315
Period size: 69 Copynumber: 2.5 Consensus size: 69
83440595 ATATTTTGAA
83440605 TATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGAAGTAATAAAATAGAAATTTTTT
1 TATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGAAGTAATAAAATAGAAATTTTTT
83440670 TAGT
66 TAGT
* * *
83440674 TATTTTGATATTATTTGATATAATAAAATAGAAGTTTATTTGATGTAATAAAATAGAATTTTTTT
1 TATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGAAGTAATAAAATAGAAATTTTTT
83440739 TAGT
66 TAGT
83440743 TATTTTGATATTATTTGATGTAATAAAATAGAA
1 TATTTTGATATTATTTGATGTAATAAAATAGAA
83440776 ATTTTTGAAT
Statistics
Matches: 98, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 98 1.00
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.47
Consensus pattern (69 bp):
TATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGAAGTAATAAAATAGAAATTTTTT
TAGT
Found at i:83440792 original size:9 final size:9
Alignment explanation
Indices: 83440778--83440814 Score: 67
Period size: 9 Copynumber: 4.2 Consensus size: 9
83440768 AAATAGAAAT
83440778 TTTTGAATA
1 TTTTGAATA
83440787 TTTTGAATA
1 TTTTGAATA
83440796 TTTTGAATA
1 TTTTGAATA
83440805 TTTTG-ATA
1 TTTTGAATA
83440813 TT
1 TT
83440815 ATTTGAGAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 5 0.18
9 23 0.82
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (9 bp):
TTTTGAATA
Found at i:83441007 original size:32 final size:32
Alignment explanation
Indices: 83440966--83441032 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
83440956 CTAATTTAAT
* *
83440966 TAAAAACCCTAACCTAATTTAATTAAAAACCC
1 TAAAAACCCTAACCTAATTAAATAAAAAACCC
83440998 TAAAAACCCTAACCTAATTAAATAAAAAACCC
1 TAAAAACCCTAACCTAATTAAATAAAAAACCC
83441030 TAA
1 TAA
83441033 CCTAATTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.54, C:0.24, G:0.00, T:0.22
Consensus pattern (32 bp):
TAAAAACCCTAACCTAATTAAATAAAAAACCC
Found at i:83442174 original size:23 final size:23
Alignment explanation
Indices: 83440845--83442173 Score: 2109
Period size: 23 Copynumber: 57.8 Consensus size: 23
83440835 ATTAATACCC
*
83440845 TTAACTTAACAACCCTAACCTAAT
1 TTAA-TTAAAAACCCTAACCTAAT
83440869 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83440892 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83440915 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83440938 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83440961 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83440984 TTAATTAAAAACCCTAAAAACCCTAACCT
1 TTAATTAAAAACCCT---AA-CCTAA--T
*
83441013 AATTAAATAAAAAACCCTAACCTAAT
1 --TT-AATTAAAAACCCTAACCTAAT
83441039 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
* *
83441062 TAAATTAACAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
*
83441085 TTAATTAAAATCCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
* *
83441108 TAAATTAACAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83441131 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83441154 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83441177 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83441200 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83441223 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83441246 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83441269 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83441292 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83441315 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83441338 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83441361 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83441384 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83441407 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83441430 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83441453 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83441476 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83441499 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83441522 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83441545 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83441568 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83441591 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83441614 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83441637 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83441660 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83441683 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83441706 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83441729 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83441752 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83441775 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83441798 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
83441821 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
*
83441844 TTAATTAAAAACCCTAACC---C
1 TTAATTAAAAACCCTAACCTAAT
* *
83441864 TTAACCCT-AAAATCCTAACCTAAT
1 TTAA--TTAAAAACCCTAACCTAAT
83441888 TTAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
*
83441911 TTAATTAAAAACCCTAACC-CA-
1 TTAATTAAAAACCCTAACCTAAT
*
83441932 -TAACCCT-AAAACCCTAACCTAAT
1 TTAA--TTAAAAACCCTAACCTAAT
*
83441955 TAAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
*
83441978 TTAATTAAAAACCATAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
*
83442001 TAAATTAAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
* *
83442024 TTAATTAAAAACTC-AACC--CT
1 TTAATTAAAAACCCTAACCTAAT
* **
83442044 TCACCCT-AAAACCCTAACCTAAT
1 TTA-ATTAAAAACCCTAACCTAAT
* *
83442067 TAAATTGAAAACCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTAAT
* **
83442090 TAAATTAAAAACCCTAACC--CG
1 TTAATTAAAAACCCTAACCTAAT
* *
83442111 TTACTTAAAAACCCTAACC---C
1 TTAATTAAAAACCCTAACCTAAT
***
83442131 TTAACTTAAAAACCCTAACC-CCC
1 TTAA-TTAAAAACCCTAACCTAAT
83442154 TTAACTTAAAAACCCTAACC
1 TTAA-TTAAAAACCCTAACC
83442174 CTTAACTTAA
Statistics
Matches: 1230, Mismatches: 46, Indels: 59
0.92 0.03 0.04
Matches are distributed among these distances:
20 19 0.02
21 60 0.05
22 11 0.01
23 1098 0.89
24 12 0.01
26 3 0.00
27 5 0.00
28 5 0.00
29 3 0.00
31 2 0.00
32 12 0.01
ACGTcount: A:0.47, C:0.24, G:0.00, T:0.29
Consensus pattern (23 bp):
TTAATTAAAAACCCTAACCTAAT
Found at i:83442218 original size:43 final size:43
Alignment explanation
Indices: 83441844--83442237 Score: 217
Period size: 44 Copynumber: 9.0 Consensus size: 43
83441834 CTAACCTAAT
* * *
83441844 TTAA-TTAAAAACCCTAACCCTTAACCCT-AAAATCCT-AACCTAAT
1 TTAACTTAAAAACCCTAACCCTTAA-CTTAAAAACCCTAAACC---C
*
83441888 TTAA-TTAAAAACCCTAACCTAATTTAA-TTAAAAACCCT-AACCC
1 TTAACTTAAAAACCCTAACC---CTTAACTTAAAAACCCTAAACCC
* * * * *
83441931 ATAACCCT-AAAACCCTAACCTAATTAAATTAAAAACCCT-AACCTAAT
1 TTAA-CTTAAAAACCCTAACC--CTTAACTTAAAAACCCTAAACC---C
* * * *
83441978 TTAA-TTAAAAACCATAACCTAATTAAATTAAAAACCCT-AACCTAAT
1 TTAACTTAAAAACCCTAACC--CTTAACTTAAAAACCCTAAACC---C
* * * *
83442024 TTAA-TTAAAAACTC-AACCCTTCACCCT-AAAACCCT-AACCTAA
1 TTAACTTAAAAACCCTAACCCTT-AACTTAAAAACCCTAAACC--C
* * * *
83442066 TTAAATTGAAAACCCTAACCTAATTAAATTAAAAACCCT-AACCC
1 TTAACTTAAAAACCCTAACC--CTTAACTTAAAAACCCTAAACCC
*
83442110 GTT-ACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAACCCCC
1 -TTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAA-ACCC
83442154 TTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCC
1 TTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCC
* * * *
83442197 TTAACTTAAAAACTCTTACCCTTAACTTTAAAACCTTAAAC
1 TTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAAC
83442238 TAAGTTAATA
Statistics
Matches: 292, Mismatches: 37, Indels: 43
0.78 0.10 0.12
Matches are distributed among these distances:
42 20 0.07
43 73 0.25
44 106 0.36
45 11 0.04
46 75 0.26
47 7 0.02
ACGTcount: A:0.45, C:0.28, G:0.01, T:0.26
Consensus pattern (43 bp):
TTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCC
Found at i:83442478 original size:115 final size:116
Alignment explanation
Indices: 83442242--83442482 Score: 344
Period size: 115 Copynumber: 2.1 Consensus size: 116
83442232 TTAAACTAAG
* * **
83442242 TTAATAATTTTACTTTCATGTAATGTTAGATTTGGAAAATTGGTTTTTCCTAGTACTAACAATTA
1 TTAATAATTTTACTTTCATATAATGTTAGATTTGGAAAAATGGTTTTGACTAGTACTAACAATTA
* *
83442307 ATAACCCTAACCTAATTTGATAATTTTACTAACCATTAATACAATTTATCAC
66 ATAACCCTAA-CTAATTTGATAATTTTACTAACCATTAATACAAGTTATCAA
*
83442359 TTAATAATTTTACTTTCATATAATGTTAGATTTGGAAAAAT-GTTTTGACTGGTACTAACAATTA
1 TTAATAATTTTACTTTCATATAATGTTAGATTTGGAAAAATGGTTTTGACTAGTACTAACAATTA
***
83442423 ATAATTTTATA-TAATTTGA-AATTTTTACTAACCATTAATACAAGTTATCAA
66 ATAACCCTA-ACTAATTTGATAA-TTTTACTAACCATTAATACAAGTTATCAA
83442474 TTAATAATT
1 TTAATAATT
83442483 CACAAACTTA
Statistics
Matches: 112, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
114 2 0.02
115 44 0.39
116 26 0.23
117 40 0.36
ACGTcount: A:0.38, C:0.11, G:0.08, T:0.43
Consensus pattern (116 bp):
TTAATAATTTTACTTTCATATAATGTTAGATTTGGAAAAATGGTTTTGACTAGTACTAACAATTA
ATAACCCTAACTAATTTGATAATTTTACTAACCATTAATACAAGTTATCAA
Found at i:83448920 original size:21 final size:21
Alignment explanation
Indices: 83448896--83448935 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
83448886 TAATTTAGCC
*
83448896 ATTTTTGTTTTTATTTTAAAT
1 ATTTTTGTTTTTAATTTAAAT
83448917 ATTTTTGTTTTTAATTTAA
1 ATTTTTGTTTTTAATTTAA
83448936 TTTTTACATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (21 bp):
ATTTTTGTTTTTAATTTAAAT
Found at i:83455701 original size:22 final size:23
Alignment explanation
Indices: 83455676--83455719 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
83455666 CTTAGTTTAG
* *
83455676 TTAAATGATTTCTAA-TATGTTT
1 TTAAATGAATTCAAATTATGTTT
83455698 TTAAATGAATTCAAATTATGTT
1 TTAAATGAATTCAAATTATGTT
83455720 AGCACCACTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.36, C:0.05, G:0.09, T:0.50
Consensus pattern (23 bp):
TTAAATGAATTCAAATTATGTTT
Found at i:83466823 original size:18 final size:18
Alignment explanation
Indices: 83466800--83466836 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
83466790 TAGAATAAAA
83466800 AATATAATCAATATTCAT
1 AATATAATCAATATTCAT
83466818 AATATAATCAATATTCAT
1 AATATAATCAATATTCAT
83466836 A
1 A
83466837 CAAAATTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (18 bp):
AATATAATCAATATTCAT
Found at i:83467095 original size:24 final size:22
Alignment explanation
Indices: 83467039--83467101 Score: 56
Period size: 24 Copynumber: 2.8 Consensus size: 22
83467029 TGGACCTTTC
**
83467039 AATTTGATA-ATTTTTTAATTT
1 AATTTGATATATTTTTTAATGG
* *
83467060 AATTTCAAATATTTATTTATATGG
1 AATTTGATATATTT-TTTA-ATGG
83467084 AATTTGATATATATTTTT
1 AATTTGATATAT-TTTTT
83467102 TAATTTTGAT
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
21 7 0.22
22 4 0.12
23 4 0.12
24 15 0.47
25 2 0.06
ACGTcount: A:0.35, C:0.02, G:0.06, T:0.57
Consensus pattern (22 bp):
AATTTGATATATTTTTTAATGG
Found at i:83467497 original size:43 final size:43
Alignment explanation
Indices: 83467426--83467517 Score: 166
Period size: 43 Copynumber: 2.1 Consensus size: 43
83467416 AAACTTAAAG
*
83467426 TTATACCTTATCTTATTACTATTATTAATAATTGACATCATCT
1 TTATCCCTTATCTTATTACTATTATTAATAATTGACATCATCT
*
83467469 TTATCCCTTTTCTTATTACTATTATTAATAATTGACATCATCT
1 TTATCCCTTATCTTATTACTATTATTAATAATTGACATCATCT
83467512 TTATCC
1 TTATCC
83467518 GGTAGTCTAT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.29, C:0.18, G:0.02, T:0.50
Consensus pattern (43 bp):
TTATCCCTTATCTTATTACTATTATTAATAATTGACATCATCT
Found at i:83482098 original size:23 final size:22
Alignment explanation
Indices: 83482047--83482098 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
83482037 CCTCGTCTTT
*
83482047 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
83482069 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
83482092 TTCTTTT
1 TTCTTTT
83482099 TCAAATTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:83482113 original size:18 final size:18
Alignment explanation
Indices: 83482092--83482130 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
83482082 TTTCTTCAAC
*
83482092 TTCTTTTTCAAATTTCTT
1 TTCTGTTTCAAATTTCTT
*
83482110 TTCTGTTTCACATTTCTT
1 TTCTGTTTCAAATTTCTT
83482128 TTC
1 TTC
83482131 ACTCTCAATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.13, C:0.21, G:0.03, T:0.64
Consensus pattern (18 bp):
TTCTGTTTCAAATTTCTT
Found at i:83487567 original size:54 final size:53
Alignment explanation
Indices: 83487501--83487762 Score: 238
Period size: 54 Copynumber: 4.8 Consensus size: 53
83487491 ATGACTTTTT
* *
83487501 ACTTTGCGAGATTTTACGAATCTCGCAGTTCGCTGATTTACGATCATGACATTC
1 ACTTT-CGAGATTTTACGAATCTCACAGTCCGCTGATTTACGATCATGACATTC
* * * * ** * *
83487555 AGCTTTTGAGATTTTACGAATTTCATAGTCCGTTGATTTACGATCACCACCTTTT
1 A-CTTTCGAGATTTTACGAATCTCACAGTCCGCTGATTTACGATCATGA-CATTC
* * ** * *
83487610 ACTTTCGAAATTTTACGAATCTTATGGTCCGCTGATTTATGATCATGACCTTCC
1 ACTTTCGAGATTTTACGAATCTCACAGTCCGCTGATTTACGATCATGACATT-C
* ** * *
83487664 ACTTTCGAGATTTTACGAATTTCACAGTTTGCTAATTTACAATCATGA-ACTTC
1 ACTTTCGAGATTTTACGAATCTCACAGTCCGCTGATTTACGATCATGACA-TTC
* * * *
83487717 TACTTTCGAGATTTTATGAATCTCACGGTCCACTGATTGACGATCA
1 -ACTTTCGAGATTTTACGAATCTCACAGTCCGCTGATTTACGATCA
83487763 CGACCTTTGT
Statistics
Matches: 162, Mismatches: 41, Indels: 10
0.76 0.19 0.05
Matches are distributed among these distances:
53 4 0.02
54 150 0.93
55 8 0.05
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (53 bp):
ACTTTCGAGATTTTACGAATCTCACAGTCCGCTGATTTACGATCATGACATTC
Done.