Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 252 of 276
Found at i:83487702 original size:108 final size:108
Alignment explanation
Indices: 83487497--83487769 Score: 314
Period size: 108 Copynumber: 2.5 Consensus size: 108
83487487 GCTAATGACT
* * * * *
83487497 TTTTACTTTGCGAGATTTTACGAATCTCGCAGTTCGCTGATTTACGATCATGACATTCAGCTTTT
1 TTTTACTTT-CGAGATTTTACGAATCTCACGGTCCGCTGATTTACGATCATGACCTTCAGCTTTC
* * * * *
83487562 GAGATTTTACGAATTTCATAGTCCGTTGATTTACGATCACCACC
65 GAGATTTTACGAATTTCACAGTCCGCTAATTTACAATCACCAAC
* * * *
83487606 TTTTACTTTCGAAATTTTACGAATCTTATGGTCCGCTGATTTATGATCATGACCTTCCA-CTTTC
1 TTTTACTTTCGAGATTTTACGAATCTCACGGTCCGCTGATTTACGATCATGACCTT-CAGCTTTC
** **
83487670 GAGATTTTACGAATTTCACAGTTTGCTAATTTACAATCATGAAC
65 GAGATTTTACGAATTTCACAGTCCGCTAATTTACAATCACCAAC
* * * * *
83487714 TTCTACTTTCGAGATTTTATGAATCTCACGGTCCACTGATTGACGATCACGACCTT
1 TTTTACTTTCGAGATTTTACGAATCTCACGGTCCGCTGATTTACGATCATGACCTT
83487770 TGTAACAACT
Statistics
Matches: 136, Mismatches: 27, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
108 125 0.92
109 11 0.08
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.39
Consensus pattern (108 bp):
TTTTACTTTCGAGATTTTACGAATCTCACGGTCCGCTGATTTACGATCATGACCTTCAGCTTTCG
AGATTTTACGAATTTCACAGTCCGCTAATTTACAATCACCAAC
Found at i:83491434 original size:79 final size:81
Alignment explanation
Indices: 83491298--83491482 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
83491288 TTGAATGATG
* *
83491298 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
83491362 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
83491377 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
83491439 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
83491457 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
83491483 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:83491496 original size:40 final size:40
Alignment explanation
Indices: 83491299--83491482 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
83491289 TGAATGATGT
* * * *
83491299 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
83491339 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
83491379 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
83491417 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
83491458 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
83491483 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:83491504 original size:79 final size:79
Alignment explanation
Indices: 83491351--83491515 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
83491341 GGACTAAGAT
* * **
83491351 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
83491416 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
83491430 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
83491493 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
83491509 CCGAAGG
1 CCGAAGG
83491516 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:83495222 original size:12 final size:12
Alignment explanation
Indices: 83495192--83495224 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
83495182 ATGCAACAGG
83495192 AAACCAGCA-GC
1 AAACCAGCATGC
83495203 AAACCAGCATGC
1 AAACCAGCATGC
*
83495215 AGACCAGCAT
1 AAACCAGCAT
83495225 CCAAGCTGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 9 0.45
12 11 0.55
ACGTcount: A:0.42, C:0.33, G:0.18, T:0.06
Consensus pattern (12 bp):
AAACCAGCATGC
Found at i:83496245 original size:20 final size:20
Alignment explanation
Indices: 83496222--83496260 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
83496212 AAATTTAAAA
83496222 TATAAAAAATTATTAATATG
1 TATAAAAAATTATTAATATG
* *
83496242 TATATAAATTTATTAATAT
1 TATAAAAAATTATTAATAT
83496261 ATGTAAAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (20 bp):
TATAAAAAATTATTAATATG
Found at i:83496322 original size:32 final size:32
Alignment explanation
Indices: 83496281--83496367 Score: 106
Period size: 33 Copynumber: 2.7 Consensus size: 32
83496271 AACTTTTTCG
83496281 GAAAATATTTTCAAGAAATC-TGCCAAACAACA
1 GAAAATATTTTCAAGAAATCAT-CCAAACAACA
* *
83496313 GAAAATATTTTACACAG-ATTCATCCAAACACCA
1 GAAAATATTTT-CA-AGAAATCATCCAAACAACA
*
83496346 GAAAATATTTTCAATAAATCAT
1 GAAAATATTTTCAAGAAATCAT
83496368 TTTCCAGAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
31 1 0.02
32 18 0.38
33 25 0.53
34 3 0.06
ACGTcount: A:0.48, C:0.18, G:0.07, T:0.26
Consensus pattern (32 bp):
GAAAATATTTTCAAGAAATCATCCAAACAACA
Found at i:83496418 original size:20 final size:20
Alignment explanation
Indices: 83496360--83496411 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
83496350 ATATTTTCAA
83496360 TAAATCATTTTCCAGAAAAG
1 TAAATCATTTTCCAGAAAAG
*
83496380 TAAATCATTTTCCAAAAAAG
1 TAAATCATTTTCCAGAAAAG
83496400 TAAATCATTTTC
1 TAAATCATTTTC
83496412 TGGAAAACAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.44, C:0.15, G:0.06, T:0.35
Consensus pattern (20 bp):
TAAATCATTTTCCAGAAAAG
Found at i:83496862 original size:21 final size:22
Alignment explanation
Indices: 83496810--83496862 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
83496800 ACCGCTGTTT
*
83496810 CTAATCTCA-CTGCTACAGTAT
1 CTAATCTCACCTGCTACAGTAA
*
83496831 CCAATCTCACCT-CTACAGTAA
1 CTAATCTCACCTGCTACAGTAA
83496852 CTAATCTCACC
1 CTAATCTCACC
83496863 GCCACCGCTG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 26 0.93
22 2 0.07
ACGTcount: A:0.30, C:0.36, G:0.06, T:0.28
Consensus pattern (22 bp):
CTAATCTCACCTGCTACAGTAA
Found at i:83498388 original size:49 final size:48
Alignment explanation
Indices: 83498331--83498427 Score: 176
Period size: 49 Copynumber: 2.0 Consensus size: 48
83498321 TCACTGTTTC
83498331 TCTTTCCCTTTTCTTCGTTGCCTTTAAATTCCTTTCTTCCCTTGGTGA
1 TCTTTCCCTTTTCTTCGTTGCCTTTAAATTCCTTTCTTCCCTTGGTGA
*
83498379 NTCTTTCCCTTTTCTTTGTTGCCTTTAAATTCCTTTCTTCCCTTGGTGA
1 -TCTTTCCCTTTTCTTCGTTGCCTTTAAATTCCTTTCTTCCCTTGGTGA
83498428 ATCCCCCTCT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.08, C:0.28, G:0.10, T:0.53
Consensus pattern (48 bp):
TCTTTCCCTTTTCTTCGTTGCCTTTAAATTCCTTTCTTCCCTTGGTGA
Found at i:83502417 original size:45 final size:44
Alignment explanation
Indices: 83502368--83502487 Score: 143
Period size: 45 Copynumber: 2.7 Consensus size: 44
83502358 ATACCAGAAA
* * *
83502368 CGAGTAAGACCGTAGCTACAAGACGTTATGGTATTACG-ATTCTAT
1 CGAGTAAGACCATAGCTA-AAGACGTTATGGCA-TAAGAATTCTAT
*
83502413 CGAGTAAGACCATAGCTAAAAGACGTTATGGCATAAGAATTTTAT
1 CGAGTAAGACCATAGCT-AAAGACGTTATGGCATAAGAATTCTAT
* *
83502458 CAAGTAAGACCATAGCTGAAAGACGCTATG
1 CGAGTAAGACCATAGCT-AAAGACGTTATG
83502488 ACATCATTAA
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
44 3 0.05
45 62 0.94
46 1 0.02
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.25
Consensus pattern (44 bp):
CGAGTAAGACCATAGCTAAAGACGTTATGGCATAAGAATTCTAT
Found at i:83502568 original size:46 final size:46
Alignment explanation
Indices: 83502504--83502718 Score: 272
Period size: 46 Copynumber: 4.7 Consensus size: 46
83502494 TTAATCAAAC
*
83502504 GAATAAGACCACAGTTGAAAGACACTATGGCAACACGACGAAAAAT
1 GAATAAGACCATAGTTGAAAGACACTATGGCAACACGACGAAAAAT
* * *
83502550 GAATAAGACCATATTTGAAAGACACTATGGCAACATGAAGAAAAAT
1 GAATAAGACCATAGTTGAAAGACACTATGGCAACACGACGAAAAAT
* *
83502596 GAATAAGACCATAGTTGAAAGACACTATGGCAACACGATGGAAAAT
1 GAATAAGACCATAGTTGAAAGACACTATGGCAACACGACGAAAAAT
* * * * * *
83502642 GAATAAGGA-TATTGTTGAAAGACACTATGGCATCAAGTCG-AGAAT
1 GAATAA-GACCATAGTTGAAAGACACTATGGCAACACGACGAAAAAT
* * *
83502687 AAATAAGACCATGGTTGAAAGACACCATGGCA
1 GAATAAGACCATAGTTGAAAGACACTATGGCA
83502719 CCCTTCGGTC
Statistics
Matches: 148, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
44 2 0.01
45 29 0.20
46 115 0.78
47 2 0.01
ACGTcount: A:0.46, C:0.15, G:0.21, T:0.18
Consensus pattern (46 bp):
GAATAAGACCATAGTTGAAAGACACTATGGCAACACGACGAAAAAT
Found at i:83505712 original size:79 final size:81
Alignment explanation
Indices: 83505570--83505752 Score: 216
Period size: 79 Copynumber: 2.3 Consensus size: 81
83505560 TCCTCGTTCA
* *
83505570 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
* *
83505634 T-TTAGTAAC-TCGCACG
66 TATT-GTAACTTAGC-CC
* **
83505650 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
*
83505712 ATATTGTCACTTAGCCC
65 ATATTGTAACTTAGCCC
*
83505729 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
83505753 CATCATTCAA
Statistics
Matches: 89, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
78 3 0.03
79 57 0.64
80 29 0.33
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATTGTAACTTAGCCC
Found at i:83505752 original size:40 final size:41
Alignment explanation
Indices: 83505568--83505752 Score: 222
Period size: 40 Copynumber: 4.6 Consensus size: 41
83505558 GCTCCTCGTT
* *
83505568 CAAATGCCTTCGGGACATAGCCCGGTTA-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
*
83505608 CAAATGCCTTCGGGACTTAACCCGGAT-TTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
* *
83505648 CGAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
* * * *
83505687 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATTAGTAAC-TCGCA
83505728 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
83505753 CATCATTCAA
Statistics
Matches: 125, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 78 0.62
41 13 0.10
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
Found at i:83507263 original size:34 final size:34
Alignment explanation
Indices: 83507220--83507286 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
83507210 ACATAATAAA
83507220 CATAGAATATGGAAATCAATTATTTTTATGACTG
1 CATAGAATATGGAAATCAATTATTTTTATGACTG
*
83507254 CATAGAATATGGAAATCAATTTTTTTTATGACT
1 CATAGAATATGGAAATCAATTATTTTTATGACT
83507287 CGGTTTTGTG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.37, C:0.09, G:0.13, T:0.40
Consensus pattern (34 bp):
CATAGAATATGGAAATCAATTATTTTTATGACTG
Found at i:83511823 original size:42 final size:40
Alignment explanation
Indices: 83511727--83511919 Score: 260
Period size: 40 Copynumber: 4.8 Consensus size: 40
83511717 CTAGTGATTT
*
83511727 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
*
83511767 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG--ATA
* *
83511809 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
* * *
83511849 TATCCGAGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
** * * *
83511889 TGCCCGGGTTAAGAACCGAAGGCAATTGTGC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
83511920 TTGTGGTAAT
Statistics
Matches: 136, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
40 99 0.73
42 37 0.27
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
Found at i:83511864 original size:82 final size:80
Alignment explanation
Indices: 83511727--83511919 Score: 269
Period size: 82 Copynumber: 2.4 Consensus size: 80
83511717 CTAGTGATTT
* * * * *
83511727 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGAGCTAAGACCCGAAGGCAT
*
83511792 TTGTGCGAGTTGATATA
66 TCGTGCGAGTTG--ATA
83511809 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGAGCTAAGACCCGAAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGAGCTAAGACCCGAAGGCAT
*
83511874 TCGTGCGAGTTGCTA
66 TCGTGCGAGTTGATA
** * *
83511889 TGCCCGGGTTAAGAACCGAAGGCAATTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
83511920 TTGTGGTAAT
Statistics
Matches: 100, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
80 29 0.29
82 71 0.71
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.23
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGAGCTAAGACCCGAAGGCAT
TCGTGCGAGTTGATA
Found at i:83521141 original size:18 final size:19
Alignment explanation
Indices: 83521118--83521153 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
83521108 ATTGTTTTCA
83521118 TACCTT-TAGGTATATCAC
1 TACCTTGTAGGTATATCAC
83521136 TACCTTGTAGGTATATCA
1 TACCTTGTAGGTATATCA
83521154 TTAATATCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (19 bp):
TACCTTGTAGGTATATCAC
Found at i:83521557 original size:32 final size:32
Alignment explanation
Indices: 83521516--83521580 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
83521506 TAAACATGTT
83521516 AGCCTTTTCGGTTCATAACGTAAATAAATTTA
1 AGCCTTTTCGGTTCATAACGTAAATAAATTTA
83521548 AGCCTTTTCGGTTCATAACGTAAATAAATTTA
1 AGCCTTTTCGGTTCATAACGTAAATAAATTTA
83521580 A
1 A
83521581 ATATGATTGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.37
Consensus pattern (32 bp):
AGCCTTTTCGGTTCATAACGTAAATAAATTTA
Found at i:83523546 original size:33 final size:32
Alignment explanation
Indices: 83523477--83523598 Score: 181
Period size: 32 Copynumber: 3.8 Consensus size: 32
83523467 ACTATGCTAG
83523477 TTTTTTATATGTAAAACTAATGTATGATCTAC
1 TTTTTTATATGTAAAACTAATGTATGATCTAC
* * *
83523509 TTTTTTATATGTGAACCTAATGTATTATCTAC
1 TTTTTTATATGTAAAACTAATGTATGATCTAC
*
83523541 TTTTTTTATATGCAAAACTAATGTATGATCTAC
1 -TTTTTTATATGTAAAACTAATGTATGATCTAC
* *
83523574 TTTTTTATACGTAAACCTAATGTAT
1 TTTTTTATATGTAAAACTAATGTAT
83523599 CATATTTTTT
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
32 51 0.65
33 28 0.35
ACGTcount: A:0.32, C:0.11, G:0.09, T:0.48
Consensus pattern (32 bp):
TTTTTTATATGTAAAACTAATGTATGATCTAC
Found at i:83523580 original size:65 final size:65
Alignment explanation
Indices: 83523477--83523598 Score: 217
Period size: 65 Copynumber: 1.9 Consensus size: 65
83523467 ACTATGCTAG
* * *
83523477 TTTTTTATATGTAAAACTAATGTATGATCTACTTTTTTATATGTGAACCTAATGTATTATCTACT
1 TTTTTTATATGCAAAACTAATGTATGATCTACTTTTTTATACGTAAACCTAATGTATTATCTACT
83523542 TTTTTTATATGCAAAACTAATGTATGATCTACTTTTTTATACGTAAACCTAATGTAT
1 TTTTTTATATGCAAAACTAATGTATGATCTACTTTTTTATACGTAAACCTAATGTAT
83523599 CATATTTTTT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 54 1.00
ACGTcount: A:0.32, C:0.11, G:0.09, T:0.48
Consensus pattern (65 bp):
TTTTTTATATGCAAAACTAATGTATGATCTACTTTTTTATACGTAAACCTAATGTATTATCTACT
Found at i:83527140 original size:21 final size:21
Alignment explanation
Indices: 83527115--83527167 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
83527105 CGTTGTTTCT
*
83527115 AATCTCACCGCTACAGTATCC
1 AATCTCACCGCTACAGTAACC
* *
83527136 AATCTCACCGCTACTGTAACT
1 AATCTCACCGCTACAGTAACC
83527157 AATCTCACCGC
1 AATCTCACCGC
83527168 CACCGCTGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.28, C:0.38, G:0.09, T:0.25
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:83527633 original size:25 final size:25
Alignment explanation
Indices: 83527599--83527649 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
83527589 TATATTCTCG
83527599 AAGATAGATCTTCGTTCTGGTTATT
1 AAGATAGATCTTCGTTCTGGTTATT
83527624 AAGATAGATCTTCGTTCTGGTTATT
1 AAGATAGATCTTCGTTCTGGTTATT
83527649 A
1 A
83527650 TCAACTACGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.25, C:0.12, G:0.20, T:0.43
Consensus pattern (25 bp):
AAGATAGATCTTCGTTCTGGTTATT
Found at i:83533065 original size:25 final size:24
Alignment explanation
Indices: 83533023--83533075 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 24
83533013 ACATACAGCA
*
83533023 GCTCTTTATGAGCGTCCTGATATAG
1 GCTCTTTATGAACGTCCTGATAT-G
* *
83533048 GCTCTTTGTGAACTTCCTGATATG
1 GCTCTTTATGAACGTCCTGATATG
83533072 GCTC
1 GCTC
83533076 GCTTGAACTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.38
Consensus pattern (24 bp):
GCTCTTTATGAACGTCCTGATATG
Found at i:83533086 original size:23 final size:25
Alignment explanation
Indices: 83533037--83533086 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
83533027 TTTATGAGCG
**
83533037 TCCTGATATAGGCTCTTTGTGAACT
1 TCCTGATATAGGCTCGCTGTGAACT
83533062 TCCTGATAT-GGCTCGCT-TGAACT
1 TCCTGATATAGGCTCGCTGTGAACT
83533085 TC
1 TC
83533087 TTGTTATATG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 8 0.35
24 6 0.26
25 9 0.39
ACGTcount: A:0.18, C:0.24, G:0.20, T:0.38
Consensus pattern (25 bp):
TCCTGATATAGGCTCGCTGTGAACT
Found at i:83534009 original size:19 final size:19
Alignment explanation
Indices: 83533982--83534047 Score: 73
Period size: 19 Copynumber: 3.6 Consensus size: 19
83533972 AAGATTGGTT
*
83533982 TTGGCTTGGTTTTAATGTC
1 TTGGATTGGTTTTAATGTC
* * *
83534001 TTGGATTGGTGTT--GGTT
1 TTGGATTGGTTTTAATGTC
*
83534018 TTGGTTTGGTTTTAATGTC
1 TTGGATTGGTTTTAATGTC
83534037 TTGGATTGGTT
1 TTGGATTGGTT
83534048 AGTGCATGTG
Statistics
Matches: 36, Mismatches: 9, Indels: 4
0.73 0.18 0.08
Matches are distributed among these distances:
17 13 0.36
19 23 0.64
ACGTcount: A:0.09, C:0.05, G:0.32, T:0.55
Consensus pattern (19 bp):
TTGGATTGGTTTTAATGTC
Found at i:83534027 original size:36 final size:36
Alignment explanation
Indices: 83533976--83534046 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
83533966 ATGAATAAGA
83533976 TTGGTTTTGGCTTGGTTTTAATGTCTTGGATTGGTG
1 TTGGTTTTGGCTTGGTTTTAATGTCTTGGATTGGTG
*
83534012 TTGGTTTTGGTTTGGTTTTAATGTCTTGGATTGGT
1 TTGGTTTTGGCTTGGTTTTAATGTCTTGGATTGGT
83534047 TAGTGCATGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.08, C:0.04, G:0.32, T:0.55
Consensus pattern (36 bp):
TTGGTTTTGGCTTGGTTTTAATGTCTTGGATTGGTG
Found at i:83535584 original size:37 final size:37
Alignment explanation
Indices: 83535529--83535599 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
83535519 TTGGATAAAA
*
83535529 ACTTTCCAAAGTGATTTTCACGTTCTCTTGTTTCTTT
1 ACTTCCCAAAGTGATTTTCACGTTCTCTTGTTTCTTT
*
83535566 ACTTCCCAAAGTGATTTTCACGTTCTTTTGTTTC
1 ACTTCCCAAAGTGATTTTCACGTTCTCTTGTTTC
83535600 CCTCCCTACT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.17, C:0.23, G:0.11, T:0.49
Consensus pattern (37 bp):
ACTTCCCAAAGTGATTTTCACGTTCTCTTGTTTCTTT
Found at i:83538083 original size:20 final size:19
Alignment explanation
Indices: 83538055--83538104 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
83538045 GGAAACTCAG
*
83538055 AAAAGTTTTCGCAAAATTTTA
1 AAAATTTTTC-CAAAA-TTTA
* *
83538076 AAATTTTTTCCACAATTTA
1 AAAATTTTTCCAAAATTTA
83538095 AAAATTTTTC
1 AAAATTTTTC
83538105 TTAGGTGCAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 13 0.52
20 4 0.16
21 8 0.32
ACGTcount: A:0.40, C:0.12, G:0.04, T:0.44
Consensus pattern (19 bp):
AAAATTTTTCCAAAATTTA
Found at i:83538283 original size:21 final size:21
Alignment explanation
Indices: 83538257--83538298 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
83538247 TGACTTCGGT
*
83538257 AAGACGGCCAGCCACACACTC
1 AAGACGGCCAACCACACACTC
83538278 AAGACGGCCAACCACACACTC
1 AAGACGGCCAACCACACACTC
83538299 GTGTGCTAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.36, C:0.43, G:0.17, T:0.05
Consensus pattern (21 bp):
AAGACGGCCAACCACACACTC
Found at i:83539588 original size:23 final size:25
Alignment explanation
Indices: 83539568--83539621 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
83539558 AAGTTCAAGT
83539568 GAGCC-ATATCAGGAAGCTCAAAAA
1 GAGCCTATATCAGGAAGCTCAAAAA
*
83539592 GAGCCTATATCAGGACA-CTCATAAA
1 GAGCCTATATCAGGA-AGCTCAAAAA
83539617 GAGCC
1 GAGCC
83539622 GCGTTTGTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 5 0.19
25 21 0.78
26 1 0.04
ACGTcount: A:0.41, C:0.24, G:0.20, T:0.15
Consensus pattern (25 bp):
GAGCCTATATCAGGAAGCTCAAAAA
Found at i:83540140 original size:21 final size:21
Alignment explanation
Indices: 83540100--83540140 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
83540090 ATGAATTTAA
*
83540100 TATCAATTTAATCCATTTCAT
1 TATCAATTTAATCCAATTCAT
*
83540121 TATCAATTTAATTCAATTCA
1 TATCAATTTAATCCAATTCA
83540141 ATTCCTAGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.37, C:0.17, G:0.00, T:0.46
Consensus pattern (21 bp):
TATCAATTTAATCCAATTCAT
Found at i:83549270 original size:15 final size:15
Alignment explanation
Indices: 83549250--83549279 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
83549240 CAACACTTGT
83549250 GCCGAAACCACAAAA
1 GCCGAAACCACAAAA
*
83549265 GCCGAAACCTCAAAA
1 GCCGAAACCACAAAA
83549280 AATACATTAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.33, G:0.13, T:0.03
Consensus pattern (15 bp):
GCCGAAACCACAAAA
Found at i:83553562 original size:40 final size:40
Alignment explanation
Indices: 83553528--83553627 Score: 128
Period size: 40 Copynumber: 2.5 Consensus size: 40
83553518 TGCAATCAAG
*
83553528 CTGCCAGTATTGTGGACAAGCTACCAGTTATGCAAATAAA
1 CTGCCAGTATTGTGGACAAGCCACCAGTTATGCAAATAAA
* **
83553568 CTGCTAGTATTGTGGACAAGCCACCAGAAATGCAAATAAA
1 CTGCCAGTATTGTGGACAAGCCACCAGTTATGCAAATAAA
* ** *
83553608 TTGTTAGTATTGTAGACAAG
1 CTGCCAGTATTGTGGACAAG
83553628 TTGCCAATAT
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (40 bp):
CTGCCAGTATTGTGGACAAGCCACCAGTTATGCAAATAAA
Found at i:83553735 original size:20 final size:20
Alignment explanation
Indices: 83553669--83553726 Score: 82
Period size: 20 Copynumber: 3.0 Consensus size: 20
83553659 GCTGATAAAG
83553669 TGCCAGTATTGCAGACAAGC
1 TGCCAGTATTGCAGACAAGC
*
83553689 TGCCAGTATTG-TGACAAGC
1 TGCCAGTATTGCAGACAAGC
**
83553708 CACCAGTATTGCAGACAAG
1 TGCCAGTATTGCAGACAAG
83553727 TTGTCAGTAC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
19 16 0.48
20 17 0.52
ACGTcount: A:0.31, C:0.24, G:0.24, T:0.21
Consensus pattern (20 bp):
TGCCAGTATTGCAGACAAGC
Found at i:83553875 original size:38 final size:38
Alignment explanation
Indices: 83553801--83553880 Score: 90
Period size: 38 Copynumber: 2.1 Consensus size: 38
83553791 AACAATACAA
* * * *
83553801 TAGGCATGATTAAAGTATCCAATCATTAGTAGAAATAC
1 TAGGCATGATTAAAGCATCCAATCAGTAATAAAAATAC
* *
83553839 TAGGCATGATTTAAA-CATGCAATCAGTAATAAAAATAG
1 TAGGCATGA-TTAAAGCATCCAATCAGTAATAAAAATAC
83553877 TAGG
1 TAGG
83553881 AGCATTTAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
38 30 0.86
39 5 0.14
ACGTcount: A:0.44, C:0.11, G:0.17, T:0.28
Consensus pattern (38 bp):
TAGGCATGATTAAAGCATCCAATCAGTAATAAAAATAC
Found at i:83556880 original size:18 final size:18
Alignment explanation
Indices: 83556857--83556893 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
83556847 TTAGGAATAC
*
83556857 TTTTGTCTCAAAAGTGCT
1 TTTTGTCCCAAAAGTGCT
83556875 TTTTGTCCCAAAAGTGCT
1 TTTTGTCCCAAAAGTGCT
83556893 T
1 T
83556894 CTTAGAAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.19, G:0.16, T:0.43
Consensus pattern (18 bp):
TTTTGTCCCAAAAGTGCT
Found at i:83562101 original size:3 final size:3
Alignment explanation
Indices: 83562093--83562143 Score: 93
Period size: 3 Copynumber: 17.0 Consensus size: 3
83562083 AATATATGAA
*
83562093 ATT ATT ATT ATT AAT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
83562141 ATT
1 ATT
83562144 GGTGGTGGTT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:83577783 original size:40 final size:40
Alignment explanation
Indices: 83577685--83577947 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
83577675 TCCTCGTTCA
* * * * *
83577685 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
83577724 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
83577764 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
83577804 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
83577844 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
83577884 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
83577924 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
83577948 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:83585735 original size:40 final size:40
Alignment explanation
Indices: 83585637--83585899 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
83585627 TCCTCGTTCA
* * * * *
83585637 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
83585676 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
83585716 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
83585756 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
83585796 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
83585836 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
83585876 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
83585900 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:83593163 original size:23 final size:23
Alignment explanation
Indices: 83593133--83593180 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
83593123 CTTAAGACTT
*
83593133 TTATGGTCTGTATAGACATGGCA
1 TTATGGTCTGTATAGACATGACA
83593156 TTATGGTCTGTATAGACATGACA
1 TTATGGTCTGTATAGACATGACA
83593179 TT
1 TT
83593181 TCTCTCTGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.27, C:0.12, G:0.23, T:0.38
Consensus pattern (23 bp):
TTATGGTCTGTATAGACATGACA
Found at i:83596442 original size:43 final size:43
Alignment explanation
Indices: 83596373--83596500 Score: 127
Period size: 43 Copynumber: 3.0 Consensus size: 43
83596363 AGCTTGTACA
* * *
83596373 ATGCCAACGTCCCAAACATGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACAGGGTCTTACATGTAATCAAATATCG
**** * *
83596416 ATGTGTCTGTCCCAGACAGGGTCTTACACGAAATCAAATAT-G
1 ATGCCAATGTCCCAGACAGGGTCTTACATGTAATCAAATATCG
*
83596458 ATGCCAATGTCCCAGAC-GTGGTCTTACATGATAA-CACATATCG
1 ATGCCAATGTCCCAGACAG-GGTCTTACATG-TAATCAAATATCG
83596501 GATCCTATGT
Statistics
Matches: 66, Mismatches: 16, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
41 1 0.02
42 30 0.45
43 35 0.53
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACAGGGTCTTACATGTAATCAAATATCG
Found at i:83597093 original size:13 final size:13
Alignment explanation
Indices: 83597075--83597153 Score: 104
Period size: 13 Copynumber: 6.1 Consensus size: 13
83597065 AGTTTGGCAA
*
83597075 TGCTTTTGCAAAG
1 TGCTTTTGAAAAG
83597088 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
83597101 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
*
83597114 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
*
83597127 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
*
83597140 TACTTTTGAAAAG
1 TGCTTTTGAAAAG
83597153 T
1 T
83597154 TTGGTTTAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 58 1.00
ACGTcount: A:0.28, C:0.09, G:0.27, T:0.37
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:83599806 original size:60 final size:60
Alignment explanation
Indices: 83599729--83599866 Score: 215
Period size: 60 Copynumber: 2.3 Consensus size: 60
83599719 ATGTCGGAAT
*
83599729 TACCAGTCCAGGCTAAATCCCTTATAGCGACAAACA-CCTTTAATGAGCTCGGATCTGAAA
1 TACCAGTCCAGGCTAAATCCCTTATAGCGACAAACAGCC-TTAATGAGCTCGAATCTGAAA
* * *
83599789 TACTAGTCCAGGCTAAATCCTTTATAGTGACAAACAGCCTTAATGAGCTCGAATCTGAAA
1 TACCAGTCCAGGCTAAATCCCTTATAGCGACAAACAGCCTTAATGAGCTCGAATCTGAAA
*
83599849 TACCAGTCTAGGCTAAAT
1 TACCAGTCCAGGCTAAAT
83599867 TCAGACCCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
60 69 0.97
61 2 0.03
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (60 bp):
TACCAGTCCAGGCTAAATCCCTTATAGCGACAAACAGCCTTAATGAGCTCGAATCTGAAA
Found at i:83602055 original size:46 final size:46
Alignment explanation
Indices: 83601908--83602039 Score: 210
Period size: 46 Copynumber: 2.9 Consensus size: 46
83601898 TGTAACCCGC
* * * *
83601908 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCGCAT
*
83601954 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCGCAT
*
83602000 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
83602040 CCAAATATCC
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCGCAT
Found at i:83604460 original size:30 final size:30
Alignment explanation
Indices: 83604416--83604504 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
83604406 CAAAGATAAC
83604416 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
83604445 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
83604475 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
83604505 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:83604464 original size:15 final size:15
Alignment explanation
Indices: 83604416--83604495 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
83604406 CAAAGATAAC
*
83604416 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
83604430 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
83604445 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
83604460 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
83604475 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
83604490 AAGAAA
1 AAGAAA
83604496 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:83604504 original size:15 final size:15
Alignment explanation
Indices: 83604427--83604504 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
83604417 AGAAAACCGA
83604427 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
83604442 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
83604456 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
83604471 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
83604487 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
83604502 ATA
1 ATA
83604505 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:83607421 original size:46 final size:45
Alignment explanation
Indices: 83607278--83607421 Score: 121
Period size: 46 Copynumber: 3.1 Consensus size: 45
83607268 GAGCTCCATA
* * * *
83607278 AGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * * * *
83607326 A-CGAACTCGGACTCAACTCAACGAGTTTGGACGCTC-GCATCCATG
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
*
83607371 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
83607417 AGTGA
1 AGTGA
83607422 CATGTCACTT
Statistics
Matches: 74, Mismatches: 17, Indels: 12
0.72 0.17 0.12
Matches are distributed among these distances:
43 4 0.05
45 1 0.01
46 36 0.49
47 28 0.38
48 5 0.07
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:83616606 original size:51 final size:52
Alignment explanation
Indices: 83616515--83616657 Score: 139
Period size: 51 Copynumber: 2.8 Consensus size: 52
83616505 GTTAGGTCGC
* * * ***
83616515 ATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGCTACGATCA-A
1 ATGTGTGGTACTAAGTGCAGGCCACTATGTGTAGAAGATAGCTACGATCAGA
** *
83616566 ATGTGTGGTACTAAGTGCAGGCCACTATGTGTAGAAGATAGCTTGGTTCAGA
1 ATGTGTGGTACTAAGTGCAGGCCACTATGTGTAGAAGATAGCTACGATCAGA
* * * *
83616618 A-GTTTGGTAC-AATGTGAAGGCCACTTTGTGAAGAAGATAG
1 ATGTGTGGTACTAA-GTGCAGGCCACTATGTGTAGAAGATAG
83616658 TTTTGACTAC
Statistics
Matches: 77, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
50 2 0.03
51 73 0.95
52 2 0.03
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.27
Consensus pattern (52 bp):
ATGTGTGGTACTAAGTGCAGGCCACTATGTGTAGAAGATAGCTACGATCAGA
Found at i:83618588 original size:42 final size:42
Alignment explanation
Indices: 83618537--83618640 Score: 120
Period size: 44 Copynumber: 2.4 Consensus size: 42
83618527 CCTCCGTCAT
* * *
83618537 AGACAAGGTCTTACACGAAATTAGATA-CGATGCCAACGTCTC
1 AGACGAGGTCTTACACGAAATCAGA-AGCGATGCCAACGTCCC
* *
83618579 AGATGAGGTCTTACACGTAAATCAGAAGTTGATGCCAACGTCCC
1 AGACGAGGTCTTACACG-AAATCAGAAG-CGATGCCAACGTCCC
*
83618623 AGACGTGGTCTTACACGA
1 AGACGAGGTCTTACACGA
83618641 TAACACATAT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
42 16 0.31
43 8 0.15
44 28 0.54
ACGTcount: A:0.33, C:0.23, G:0.22, T:0.22
Consensus pattern (42 bp):
AGACGAGGTCTTACACGAAATCAGAAGCGATGCCAACGTCCC
Found at i:83621598 original size:25 final size:29
Alignment explanation
Indices: 83621556--83621608 Score: 69
Period size: 26 Copynumber: 2.0 Consensus size: 29
83621546 TTTATAACTA
83621556 TTATCATCTTAGGTTA-TTAAACCATTCT
1 TTATCATCTTAGGTTATTTAAACCATTCT
*
83621584 TTATC-TCTTA-G-TATTTAATCCATTC
1 TTATCATCTTAGGTTATTTAAACCATTC
83621609 ATCTTCATAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
25 2 0.09
26 11 0.48
27 5 0.22
28 5 0.22
ACGTcount: A:0.26, C:0.19, G:0.06, T:0.49
Consensus pattern (29 bp):
TTATCATCTTAGGTTATTTAAACCATTCT
Found at i:83626732 original size:40 final size:40
Alignment explanation
Indices: 83626686--83626870 Score: 293
Period size: 40 Copynumber: 4.6 Consensus size: 40
83626676 ACTACTTGCT
* *
83626686 CAAATGCCTTTGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
83626726 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
83626766 CAAATGCCTTCGGGACTTAGCCC-GAAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* *
83626806 CAAATGCCTTCGGGACTTAGCCCGGA-ATCAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATAT-AGTAACTCGCA
83626846 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
83626871 TTATCATCCG
Statistics
Matches: 137, Mismatches: 5, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
39 4 0.03
40 131 0.96
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:83629646 original size:28 final size:28
Alignment explanation
Indices: 83629554--83629691 Score: 174
Period size: 28 Copynumber: 5.0 Consensus size: 28
83629544 TGGCTTCTAG
* * *
83629554 AACAGATA-TTGTGACAGAGTCACCAGA
1 AACAGATATTTGTGGCATAGCCACCAGA
* * *
83629581 TACAGATA-TTGTGGCAAAGCCACC-GG
1 AACAGATATTTGTGGCATAGCCACCAGA
* *
83629607 AATAGATATTTGTGCCATAGCCACCAGA
1 AACAGATATTTGTGGCATAGCCACCAGA
*
83629635 AATAGATATTTGTGGCATAGCCACCAGA
1 AACAGATATTTGTGGCATAGCCACCAGA
83629663 AACAGATATTTGTGGCATAGCCACCAGA
1 AACAGATATTTGTGGCATAGCCACCAGA
83629691 A
1 A
83629692 CACTTCCTCC
Statistics
Matches: 97, Mismatches: 12, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
26 7 0.07
27 34 0.35
28 56 0.58
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (28 bp):
AACAGATATTTGTGGCATAGCCACCAGA
Found at i:83631310 original size:40 final size:40
Alignment explanation
Indices: 83631231--83631311 Score: 101
Period size: 40 Copynumber: 2.0 Consensus size: 40
83631221 CTTCTTTCTT
* *
83631231 TACTAATATAGGGTTACAATTAATCTTAATCTATTCCTGC
1 TACTAATATAGGGTCACAATTAATCTTAACCTATTCCTGC
* * *
83631271 TACTAATATGGGGTCACAATTAGTGTTAACCT-TTACCTGC
1 TACTAATATAGGGTCACAATTAATCTTAACCTATT-CCTGC
83631311 T
1 T
83631312 GAAGCCTCAG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
39 2 0.06
40 33 0.94
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.38
Consensus pattern (40 bp):
TACTAATATAGGGTCACAATTAATCTTAACCTATTCCTGC
Found at i:83633326 original size:38 final size:38
Alignment explanation
Indices: 83633283--83633356 Score: 148
Period size: 38 Copynumber: 1.9 Consensus size: 38
83633273 TGGAACAAAT
83633283 TTTGACATCAGATCCTCCGAATGAGGAAGAGGAGGAAA
1 TTTGACATCAGATCCTCCGAATGAGGAAGAGGAGGAAA
83633321 TTTGACATCAGATCCTCCGAATGAGGAAGAGGAGGA
1 TTTGACATCAGATCCTCCGAATGAGGAAGAGGAGGA
83633357 TGAATACTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.35, C:0.16, G:0.30, T:0.19
Consensus pattern (38 bp):
TTTGACATCAGATCCTCCGAATGAGGAAGAGGAGGAAA
Found at i:83636993 original size:17 final size:18
Alignment explanation
Indices: 83636967--83637000 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
83636957 CTTATTTTTA
83636967 AATAAATTAATA-GCATT
1 AATAAATTAATATGCATT
*
83636984 AATAATTTAATATGCAT
1 AATAAATTAATATGCAT
83637001 ATATTTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (18 bp):
AATAAATTAATATGCATT
Found at i:83637557 original size:40 final size:40
Alignment explanation
Indices: 83637502--83637581 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
83637492 TCACCCATCC
*
83637502 TTAGCCAAATCCTCCAACCTACTTCTATTTAACCTCTTTT
1 TTAGCCAAATCCTCCAACCTACTTCCATTTAACCTCTTTT
83637542 TTAGCCAAATCCTCCAACCTACTTCCATTTAACCTCTTTT
1 TTAGCCAAATCCTCCAACCTACTTCCATTTAACCTCTTTT
83637582 GCTTTCTAAC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.25, C:0.34, G:0.03, T:0.39
Consensus pattern (40 bp):
TTAGCCAAATCCTCCAACCTACTTCCATTTAACCTCTTTT
Found at i:83637674 original size:25 final size:25
Alignment explanation
Indices: 83637646--83637709 Score: 69
Period size: 25 Copynumber: 2.5 Consensus size: 25
83637636 TTTTCTCCTA
* *
83637646 AATTTTTAATTTTATTTAATTATT-T
1 AATTTTTAA-TTTATTGAATCATTAT
83637671 AATTTTTCAATTTATTGAATCATTAGT
1 AATTTTT-AATTTATTGAATCATTA-T
83637698 AATTTTT-ATTTA
1 AATTTTTAATTTA
83637710 ATTAAATTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
25 24 0.71
26 2 0.06
27 8 0.24
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (25 bp):
AATTTTTAATTTATTGAATCATTAT
Found at i:83646723 original size:22 final size:23
Alignment explanation
Indices: 83646695--83646743 Score: 68
Period size: 22 Copynumber: 2.2 Consensus size: 23
83646685 GTATGAGATC
83646695 ATCAAAAATAT-AATC-CATACAT
1 ATCAAAAATATCAATCTCA-ACAT
83646717 ATC-AAAATATCAATCTCAACAT
1 ATCAAAAATATCAATCTCAACAT
83646739 ATCAA
1 ATCAA
83646744 TCATCATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
21 7 0.29
22 14 0.58
23 3 0.12
ACGTcount: A:0.53, C:0.20, G:0.00, T:0.27
Consensus pattern (23 bp):
ATCAAAAATATCAATCTCAACAT
Found at i:83648415 original size:17 final size:17
Alignment explanation
Indices: 83648377--83648414 Score: 69
Period size: 16 Copynumber: 2.3 Consensus size: 17
83648367 GTTGTTTTTC
83648377 AAAAAGGAGAGAAAATG
1 AAAAAGGAGAGAAAATG
83648394 AAAAAGGA-AGAAAATG
1 AAAAAGGAGAGAAAATG
83648410 AAAAA
1 AAAAA
83648415 AAATGAGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.71, C:0.00, G:0.24, T:0.05
Consensus pattern (17 bp):
AAAAAGGAGAGAAAATG
Found at i:83658505 original size:40 final size:39
Alignment explanation
Indices: 83658450--83658594 Score: 211
Period size: 40 Copynumber: 3.6 Consensus size: 39
83658440 CGGATGATAA
*
83658450 CCGGGATAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA-T
*
83658490 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAT
*
83658530 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA--CTAAT
*
83658570 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
83658595 AGTGAGTAGC
Statistics
Matches: 96, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
40 90 0.94
41 6 0.06
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:83662322 original size:43 final size:43
Alignment explanation
Indices: 83662274--83662359 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
83662264 ACATCGGAAG
83662274 CGGTTCAGAACTGAACCGAGAATTTAGAAAACTTCACAACACT
1 CGGTTCAGAACTGAACCGAGAATTTAGAAAACTTCACAACACT
*
83662317 CGGTTCAGGACTGAACCGAGAATTTAGAAAACTTCACAACACT
1 CGGTTCAGAACTGAACCGAGAATTTAGAAAACTTCACAACACT
83662360 TAGAAAATTT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.38, C:0.23, G:0.17, T:0.21
Consensus pattern (43 bp):
CGGTTCAGAACTGAACCGAGAATTTAGAAAACTTCACAACACT
Found at i:83664133 original size:35 final size:35
Alignment explanation
Indices: 83664085--83664160 Score: 84
Period size: 35 Copynumber: 2.2 Consensus size: 35
83664075 GAATAAGACC
* *
83664085 ATGGT-TTATCCATAGAAAAG-TGTGAAATGTAGGT
1 ATGGTATTAACCATA-AAAAGTTGTGAAACGTAGGT
***
83664119 ATGGTATTAACCATACTGAGTTGTGAAACGTAGGT
1 ATGGTATTAACCATAAAAAGTTGTGAAACGTAGGT
83664154 ATGGTAT
1 ATGGTAT
83664161 CATCCATACT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
34 7 0.20
35 28 0.80
ACGTcount: A:0.33, C:0.08, G:0.26, T:0.33
Consensus pattern (35 bp):
ATGGTATTAACCATAAAAAGTTGTGAAACGTAGGT
Found at i:83664168 original size:35 final size:35
Alignment explanation
Indices: 83664105--83664180 Score: 125
Period size: 35 Copynumber: 2.2 Consensus size: 35
83664095 CATAGAAAAG
* *
83664105 TGTGAAATGTAGGTATGGTATTAACCATACTGAGT
1 TGTGAAACGTAGGTATGGTATCAACCATACTGAGT
*
83664140 TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAACGTAGGTATGGTATCAACCATACTGAGT
83664175 TGTGAA
1 TGTGAA
83664181 GTGTAGCTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.30, C:0.11, G:0.26, T:0.33
Consensus pattern (35 bp):
TGTGAAACGTAGGTATGGTATCAACCATACTGAGT
Found at i:83667399 original size:180 final size:181
Alignment explanation
Indices: 83667058--83667412 Score: 556
Period size: 180 Copynumber: 2.0 Consensus size: 181
83667048 GCTATAGAAC
* *
83667058 TCCAAATTAAGATCCGTTAATTTTTCCAGAAACTAGACTCACATATATTCTTACCATAACATTTT
1 TCCAAATTAAGAACCGTTAATTTTCCCAGAAACTAGACTCACATATATTCTTACCATAACATTTT
* * *
83667123 CATAATTTTTTGGTTTATCCAATTAGTACATTTTATTCATTAAATTTACCCCTATTTCACTGTCC
66 CAGAATTTTTTGGTTTATCCAATTAGTACAGTTTATTCATTAAAGTTACCCCTATTTCACTGTCC
* *
83667188 AATAGTTTCAACCTCTCTTCACTATAAATTATTTATCTCATGGTATTGGAT
131 AACAGTTTCAACCTCTCTTCACTAAAAATTATTTATCTCATGGTATTGGAT
83667239 TCCAAATTAAGAACCGTTAATTTTCCCAGAAACTAGACTCACATATATTCTTACCATAA-ACTTT
1 TCCAAATTAAGAACCGTTAATTTTCCCAGAAACTAGACTCACATATATTCTTACCATAACA-TTT
* *
83667303 TCAGAA-TTTTTGGTTTAGT-CAATTAGTACAGTTTATTCATTAAAGTTACTCCTGTTTCACTGT
65 TCAGAATTTTTTGGTTTA-TCCAATTAGTACAGTTTATTCATTAAAGTTACCCCTATTTCACTGT
* *
83667366 CCAACAG-TTCTAATCTTTCTTCACTAAAAATTATTTATCTCATGGTA
129 CCAACAGTTTC-AACCTCTCTTCACTAAAAATTATTTATCTCATGGTA
83667413 CAGATCTCGG
Statistics
Matches: 160, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
179 3 0.02
180 91 0.57
181 66 0.41
ACGTcount: A:0.31, C:0.20, G:0.08, T:0.41
Consensus pattern (181 bp):
TCCAAATTAAGAACCGTTAATTTTCCCAGAAACTAGACTCACATATATTCTTACCATAACATTTT
CAGAATTTTTTGGTTTATCCAATTAGTACAGTTTATTCATTAAAGTTACCCCTATTTCACTGTCC
AACAGTTTCAACCTCTCTTCACTAAAAATTATTTATCTCATGGTATTGGAT
Found at i:83669680 original size:54 final size:53
Alignment explanation
Indices: 83669495--83669691 Score: 207
Period size: 55 Copynumber: 3.7 Consensus size: 53
83669485 AACTTACCAT
* * * * * *
83669495 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCTTTATGTACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATGAACTCATCAA
* ** *
83669548 TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTTCCTTATGGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTAT-G-AACTCATCAA
* * * * *
83669603 TGACATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAAGTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTAT-GAACTCATCAA
*
83669657 TGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTT
83669692 ATCTTACCAA
Statistics
Matches: 118, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
52 2 0.02
53 33 0.28
54 40 0.34
55 41 0.35
56 2 0.02
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATGAACTCATCAA
Found at i:83669725 original size:47 final size:47
Alignment explanation
Indices: 83669670--83669791 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
83669660 CATGCCTTGG
* *
83669670 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
83669717 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
83669764 CATGGTCTTACATGGCATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
83669792 GTGCCAATGC
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.35
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:83669978 original size:44 final size:44
Alignment explanation
Indices: 83669929--83670013 Score: 118
Period size: 44 Copynumber: 1.9 Consensus size: 44
83669919 TATCCTTACT
* *
83669929 GTCAATTCCTCCTTAAATGCCATGTTATGAA-CATGGACTTTTCC
1 GTCAATTCCTCCTTAAATGCCATGGTA-CAACCATGGACTTTTCC
* *
83669973 GTCAATTCTTCCTTAATTGCCATGGTACAACCATGGACTTT
1 GTCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTT
83670014 GAGATATCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
43 2 0.06
44 34 0.94
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (44 bp):
GTCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTTTCC
Found at i:83671508 original size:50 final size:50
Alignment explanation
Indices: 83671433--83672182 Score: 705
Period size: 50 Copynumber: 14.9 Consensus size: 50
83671423 ACCGAAGCTC
* * * * * *
83671433 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACGCATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * *
83671483 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACATATCCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* *
83671533 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * ** *
83671583 TCTGATACACTTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAACTA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCTAACAA
* * * * * * * * *
83671634 TCGGGTACGCATAGTAGCCTACAATTATTACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * *
83671684 TCTGCTACACGTAATAGCCTGCACTTAGTACTAAACACGTGACCTAAGC-A
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CAA
* * * * ** *
83671734 TCTGATACACATAGTAGCCTGCACTAAGTACTACACATGTGATCGAAACTA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCTAACAA
* ** * * *
83671785 TCAGGTATGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * * * * *
83671835 TCCGTTACACGTAGTAGCTTGTACTTAGTACTACACACGTGACCTGACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * * ** *
83671885 TCTGATACATGTTGTAGCCTGCACTTAGTACTACACACGTGATCGAAACTA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCTAACAA
* * * * * * * * * *
83671936 TCGGGTACGCATATTAGCCTGCAGTTAGAACTACACATGCGCCCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * * * **
83671986 TCCGGTGCACGTAGTAGCCTACACTTAGTACCACACACACGACCTAAGC-A
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CAA
** * ** *
83672036 TCTAATACACGTAGTAGCCTGCACTTAGTACTACACATGTGATCAAAACTA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCTAACAA
* * * * *
83672087 TCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
83672137 TCTGGTACACGTAGTAGCCTGCA-TTAGTACTACACACGTGACCTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
83672183 AACTGTCTTA
Statistics
Matches: 561, Mismatches: 131, Indels: 17
0.79 0.18 0.02
Matches are distributed among these distances:
49 21 0.04
50 385 0.69
51 155 0.28
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.25
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
Found at i:83671722 original size:151 final size:151
Alignment explanation
Indices: 83671444--83672182 Score: 1007
Period size: 151 Copynumber: 4.9 Consensus size: 151
83671434 CTGGTACGCA
* * ** * * * * *
83671444 TAGTAGCCTGCACTTAGTACTACGCATGCGA-CCTATCAATCTGGTACACGTAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACATGTGATCGAAACTATCGGGTACGCATAGTAGCCTGCACT
* * * * *
83671508 TAGTACTACACACGTGACATATCCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGT
66 TAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGT
83671573 GACCTAACCATCTGATACACT
131 GACCTAACCATCTGATACACT
* * *
83671594 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAACTATCGGGTACGCATAGTAGCCTACAAT
1 TAGTAGCCTGCACTTAGTACTACACATGTGATCGAAACTATCGGGTACGCATAGTAGCCTGCACT
* * * *
83671659 TATTACTACACATGCGACCTATCAATCTGCTACACGTAATAGCCTGCACTTAGTACTAAACACGT
66 TAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGT
* *
83671724 GACCTAAGCATCTGATACACA
131 GACCTAACCATCTGATACACT
* * *
83671745 TAGTAGCCTGCACTAAGTACTACACATGTGATCGAAACTATCAGGTATGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACATGTGATCGAAACTATCGGGTACGCATAGTAGCCTGCACT
* * * * *
83671810 TAGTACTACACATGTGACCTATCAATCCGTTACACGTAGTAGCTTGTACTTAGTACTACACACGT
66 TAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGT
*
83671875 GACCTGACCATCTGATACA-T
131 GACCTAACCATCTGATACACT
* * * *
83671895 GTTGTAGCCTGCACTTAGTACTACACACGTGATCGAAACTATCGGGTACGCATATTAGCCTGCAG
1 -TAGTAGCCTGCACTTAGTACTACACATGTGATCGAAACTATCGGGTACGCATAGTAGCCTGCAC
* * * * * * *
83671960 TTAGAACTACACATGCGCCCTATCAATCCGGTGCACGTAGTAGCCTACACTTAGTACCACACACA
65 TTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACG
* * * *
83672025 CGACCTAAGCATCTAATACACG
130 TGACCTAACCATCTGATACACT
*
83672047 TAGTAGCCTGCACTTAGTACTACACATGTGATCAAAACTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACATGTGATCGAAACTATCGGGTACGCATAGTAGCCTGCACT
*
83672112 TAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGCCTGCA-TTAGTACTACACACGT
66 TAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGT
83672176 GACCTAA
131 GACCTAA
83672183 AACTGTCTTA
Statistics
Matches: 511, Mismatches: 75, Indels: 6
0.86 0.13 0.01
Matches are distributed among these distances:
150 48 0.09
151 463 0.91
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.25
Consensus pattern (151 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGATCGAAACTATCGGGTACGCATAGTAGCCTGCACT
TAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGT
GACCTAACCATCTGATACACT
Found at i:83671852 original size:201 final size:201
Alignment explanation
Indices: 83671436--83672220 Score: 655
Period size: 201 Copynumber: 3.9 Consensus size: 201
83671426 GAAGCTCTCT
* * *
83671436 GGTACGCATAGTAGCCTGCACTTAGTACTACGCATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGATACACGTAGTAGC
* * *
83671501 CTGCACTTAGTACTACACACGTGACATATCCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACATAACCATCTGATACACATAGTAGCCTGCACTAAGTACTA
* * * *
83671566 CACACGTGACCTAACCATCTGATACACTTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAA
131 CACACGTGACCAAACCATCAGATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCCAAA
* *
83671631 CTATCG
196 CAATCC
* * * * * *
83671637 GGTACGCATAGTAGCCTACAATTATTACTACACATGCGACCTATCAATCTGCTACACGTAATAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGATACACGTAGTAGC
* * *
83671702 CTGCACTTAGTACTAAACACGTGACCTAAGCATCTGATACACATAGTAGCCTGCACTAAGTACTA
66 CTGCACTTAGTACTACACACGTGACATAACCATCTGATACACATAGTAGCCTGCACTAAGTACTA
* * * * ** * *
83671767 CACATGTGATCGAAACTATCAGGTATGCATAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA
131 CACACGTGA-CCAAACCATCAGATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCCAA
*
83671831 TCAATCC
195 ACAATCC
* * * * * * * * *
83671838 GTTACACGTAGTAGCTTGTACTTAGTACTACACACGTGACCTGA-CCATCTGATACATGTTGTAG
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCT-ATCAATCTGATACACGTAGTAG
* * * * * * * *
83671902 CCTGCACTTAGTACTACACACGTGATCGA-AACTATCGGGTACGCATATTAGCCTGCAGTTAGAA
65 CCTGCACTTAGTACTACACACGTGA-C-ATAACCATCTGATACACATAGTAGCCTGCACTAAGTA
* * * * * * * * * * * * **
83671966 CTACACATGCGCCCTATCAATCCGGTGCACGTAGTAGCCTACACTTAGTACCACACACACGA-CC
128 CTACACACGTGACCAAACCATCAGATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCC
* *
83672030 TAAGC-ATCT
193 -AAACAATCC
** * * ** * * * * * *
83672039 AATACACGTAGTAGCCTGCACTTAGTACTACACATGTGATCAAAACTATCGGGTACGCATAGTAG
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-CCTATCAATCTGATACACGTAGTAG
* * * * * * *
83672104 CCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGCCTGCA-TTAGTACT
65 CCTGCACTTAGTACTACACACGTGACATAACCATCTGATACACATAGTAGCCTGCACTAAGTACT
** ** * * *
83672168 ACACACGTGACCTAAAACTGTCTTAAACACATAGTAGCCTGTACATAGTACTA
130 ACACACGTGACC--AAACCATCAGATACACATAGTAGCCTGCACTTAGTACTA
83672221 TTAAAACTGT
Statistics
Matches: 462, Mismatches: 112, Indels: 19
0.78 0.19 0.03
Matches are distributed among these distances:
200 16 0.03
201 303 0.66
202 143 0.31
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (201 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGATACACGTAGTAGC
CTGCACTTAGTACTACACACGTGACATAACCATCTGATACACATAGTAGCCTGCACTAAGTACTA
CACACGTGACCAAACCATCAGATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCCAAA
CAATCC
Found at i:83672227 original size:42 final size:42
Alignment explanation
Indices: 83672180--83672262 Score: 157
Period size: 42 Copynumber: 2.0 Consensus size: 42
83672170 ACACGTGACC
*
83672180 TAAAACTGTCTTAAACACATAGTAGCCTGTACATAGTACTAT
1 TAAAACTGTCTTAAACACATAGTAGCCTGCACATAGTACTAT
83672222 TAAAACTGTCTTAAACACATAGTAGCCTGCACATAGTACTA
1 TAAAACTGTCTTAAACACATAGTAGCCTGCACATAGTACTA
83672263 CACATGTGTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.39, C:0.20, G:0.12, T:0.29
Consensus pattern (42 bp):
TAAAACTGTCTTAAACACATAGTAGCCTGCACATAGTACTAT
Found at i:83678531 original size:35 final size:35
Alignment explanation
Indices: 83678481--83678607 Score: 209
Period size: 35 Copynumber: 3.6 Consensus size: 35
83678471 CATGGCAAAG
83678481 TGTGAAACGTAGGTATGGTATTAACCATACTGAGT
1 TGTGAAACGTAGGTATGGTATTAACCATACTGAGT
* *
83678516 TGTGAAACGTTGGTATGGTATTAACTATACTGAGT
1 TGTGAAACGTAGGTATGGTATTAACCATACTGAGT
* *
83678551 TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAACGTAGGTATGGTATTAACCATACTGAGT
*
83678586 TGTGAAATGTAGGTATGGTATT
1 TGTGAAACGTAGGTATGGTATT
83678608 TCAATAAGGA
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 84 1.00
ACGTcount: A:0.29, C:0.09, G:0.27, T:0.35
Consensus pattern (35 bp):
TGTGAAACGTAGGTATGGTATTAACCATACTGAGT
Found at i:83680304 original size:37 final size:37
Alignment explanation
Indices: 83680251--83680353 Score: 197
Period size: 37 Copynumber: 2.8 Consensus size: 37
83680241 CGAATAGTCC
*
83680251 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
83680288 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
83680325 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
83680354 ATACATTTCC
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.22
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:83680459 original size:48 final size:48
Alignment explanation
Indices: 83680398--83680530 Score: 203
Period size: 48 Copynumber: 2.8 Consensus size: 48
83680388 TGTTACAACA
*
83680398 TTCACATTAGCCATTCGACTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
* * *
83680446 TTCACATTCGCCATTCGGGTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
* * *
83680494 TTCACATTAGCCATTCGGCTTCACCACACATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATAT
83680531 TTATCTTGTA
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 76 1.00
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
Found at i:83684595 original size:43 final size:43
Alignment explanation
Indices: 83684530--83684611 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 43
83684520 CATACCAATG
* * *
83684530 CAATATCCCAGATACGGTCTTACATGTAATCTCATATCGTTGT
1 CAATAGCCCAGATACGGACTTACATGAAATCTCATATCGTTGT
* *
83684573 CAATAGCCCAGCTATGGACTTACATGAAATCTCATATCG
1 CAATAGCCCAGATACGGACTTACATGAAATCTCATATCG
83684612 GTGCCATATA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (43 bp):
CAATAGCCCAGATACGGACTTACATGAAATCTCATATCGTTGT
Found at i:83684648 original size:42 final size:42
Alignment explanation
Indices: 83684585--83684690 Score: 126
Period size: 42 Copynumber: 2.5 Consensus size: 42
83684575 ATAGCCCAGC
* * * *
83684585 TATGGACTTACATGAAATCTCATATC-GGTGCCATATACCAAA
1 TATGGTCTTACACGAAGTCTCATA-CAGATGCCATATACCAAA
* *
83684627 TATGGTCTTACACGAAGTCTCATACAGATGCCATATCCCAGA
1 TATGGTCTTACACGAAGTCTCATACAGATGCCATATACCAAA
83684669 TATGGTCTTACAC-ATAGTCTCA
1 TATGGTCTTACACGA-AGTCTCA
83684691 GTAACCCTAA
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
41 2 0.04
42 54 0.96
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (42 bp):
TATGGTCTTACACGAAGTCTCATACAGATGCCATATACCAAA
Found at i:83689762 original size:22 final size:22
Alignment explanation
Indices: 83689734--83689778 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
83689724 ATAAGTGGTA
83689734 GTATATCTGCATATCAGTAGTG
1 GTATATCTGCATATCAGTAGTG
83689756 GTATATCTGCATATCAGTAGTG
1 GTATATCTGCATATCAGTAGTG
83689778 G
1 G
83689779 CTAGACCACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.36
Consensus pattern (22 bp):
GTATATCTGCATATCAGTAGTG
Found at i:83689809 original size:72 final size:72
Alignment explanation
Indices: 83689688--83689828 Score: 246
Period size: 72 Copynumber: 2.0 Consensus size: 72
83689678 GTGGCAGTAC
* *
83689688 ATCTGCATATCAGTAGTGGCTAGACCACAAAGTGTTATAAGTGGTAGTATATCTGCATATCAGTA
1 ATCTGCATATCAGTAGTGGCTAGACCACAAAGTGTTATAAGTAGCAGTATATCTGCATATCAGTA
83689753 GTGGTAT
66 GTGGTAT
* *
83689760 ATCTGCATATCAGTAGTGGCTAGACCACAAAGTGTTATAAGTAGCAGTATATCTGCATATTAGTG
1 ATCTGCATATCAGTAGTGGCTAGACCACAAAGTGTTATAAGTAGCAGTATATCTGCATATCAGTA
83689825 GTGG
66 GTGG
83689829 CTTGTCCACA
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
72 65 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (72 bp):
ATCTGCATATCAGTAGTGGCTAGACCACAAAGTGTTATAAGTAGCAGTATATCTGCATATCAGTA
GTGGTAT
Found at i:83689872 original size:50 final size:50
Alignment explanation
Indices: 83689756--83689886 Score: 165
Period size: 50 Copynumber: 2.6 Consensus size: 50
83689746 ATCAGTAGTG
* * * * *
83689756 GTATATCTGCATATCAGTAGTGGCTAGACCACAAAGTGTTATAAGTAGCA
1 GTATATCTGCAAATTAGTGGTGGCTTGTCCACAAAGTGTTATAAGTAGCA
* *
83689806 GTATATCTGCATATTAGTGGTGGCTTGTCCACAAAGTGTTTTCAA-TAGCA
1 GTATATCTGCAAATTAGTGGTGGCTTGTCCACAAAGTGTTAT-AAGTAGCA
* *
83689856 GTTTATCTTCAAATTAGTGGTGGCTTGTCCA
1 GTATATCTGCAAATTAGTGGTGGCTTGTCCA
83689887 TAAATGGTGA
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
50 70 0.97
51 2 0.03
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.34
Consensus pattern (50 bp):
GTATATCTGCAAATTAGTGGTGGCTTGTCCACAAAGTGTTATAAGTAGCA
Found at i:83693198 original size:46 final size:48
Alignment explanation
Indices: 83693111--83693213 Score: 147
Period size: 46 Copynumber: 2.2 Consensus size: 48
83693101 CCAATTAATT
* *
83693111 ATTCCTGTCTCCAATGCCATATATATATAATATGGGCTTACATGGCTC
1 ATTCCTGTCTCCAAAGCCATATATATATAATATGGACTTACATGGCTC
* *
83693159 ATTCCTGTCTCCAAAGCCATATA-A-CTGATATGGACTTACATGGCTC
1 ATTCCTGTCTCCAAAGCCATATATATATAATATGGACTTACATGGCTC
*
83693205 ATTTCTGTC
1 ATTCCTGTC
83693214 CTGTCCTGTC
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
46 27 0.54
47 1 0.02
48 22 0.44
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (48 bp):
ATTCCTGTCTCCAAAGCCATATATATATAATATGGACTTACATGGCTC
Found at i:83695039 original size:40 final size:40
Alignment explanation
Indices: 83694978--83695122 Score: 200
Period size: 40 Copynumber: 3.6 Consensus size: 40
83694968 CGATATCTCT
* * * * *
83694978 CACACTAAGTGTCGTACATAGCCGAAGTTATGTCAAATCG
1 CACACTAAGTGCCATATATAGCCGAAGCTATGTCGAATCG
*
83695018 CACACTAAGTGCCATATATAGCTGAAGCTATGTCGAATCG
1 CACACTAAGTGCCATATATAGCCGAAGCTATGTCGAATCG
* ** *
83695058 CACACTAAGTGCCATATAAAGTTGAAGCTATGTCGTATCG
1 CACACTAAGTGCCATATATAGCCGAAGCTATGTCGAATCG
83695098 CACACTAAGTGCCATATATAGCCGA
1 CACACTAAGTGCCATATATAGCCGA
83695123 TTGGTCATCA
Statistics
Matches: 93, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 93 1.00
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (40 bp):
CACACTAAGTGCCATATATAGCCGAAGCTATGTCGAATCG
Found at i:83704740 original size:7 final size:7
Alignment explanation
Indices: 83704730--83704860 Score: 64
Period size: 7 Copynumber: 18.9 Consensus size: 7
83704720 CTAATAAAAA
*
83704730 ATAATAG
1 ATAATAT
83704737 ATAATTAT
1 ATAA-TAT
83704745 ATAATAT
1 ATAATAT
83704752 ATAATA-
1 ATAATAT
83704758 A-AATAT
1 ATAATAT
83704764 AGTGAATA-
1 A-T-AATAT
83704772 AT-ATAT
1 ATAATAT
83704778 ATAATA-
1 ATAATAT
*
83704784 A-AATGT
1 ATAATAT
83704790 ATAA-AT
1 ATAATAT
*
83704796 CAAAATAT
1 -ATAATAT
83704804 AT-ATA-
1 ATAATAT
*
83704809 ATAAAAT
1 ATAATAT
*
83704816 GTAAATAAT
1 AT-AAT-AT
*
83704825 ATAATAA
1 ATAATAT
*
83704832 ATAATAAAA
1 ATAAT--AT
83704841 ATAATAT
1 ATAATAT
83704848 ATAATAT
1 ATAATAT
83704855 ATAATA
1 ATAATA
83704861 GATTTTTTAC
Statistics
Matches: 96, Mismatches: 11, Indels: 34
0.68 0.08 0.24
Matches are distributed among these distances:
5 12 0.12
6 12 0.12
7 44 0.46
8 14 0.15
9 14 0.15
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (7 bp):
ATAATAT
Found at i:83704764 original size:12 final size:12
Alignment explanation
Indices: 83704747--83704860 Score: 79
Period size: 12 Copynumber: 8.9 Consensus size: 12
83704737 ATAATTATAT
83704747 AATATATAATAA
1 AATATATAATAA
83704759 AATATAGTGAATAA
1 AATATA-T-AATAA
*
83704773 TATATATAATAA
1 AATATATAATAA
*
83704785 AATGTATAAATCAAA
1 AATATAT-AAT--AA
83704800 ATATATATAATAA
1 A-ATATATAATAA
* *
83704813 AATGTAAATAATAT
1 AA--TATATAATAA
*
83704827 AATAAATAATAA
1 AATATATAATAA
*
83704839 AA-ATA-ATATAT
1 AATATATA-ATAA
83704850 AATATATAATA
1 AATATATAATA
83704861 GATTTTTTAC
Statistics
Matches: 82, Mismatches: 9, Indels: 22
0.73 0.08 0.19
Matches are distributed among these distances:
10 1 0.01
11 7 0.09
12 34 0.41
13 9 0.11
14 20 0.24
15 6 0.07
16 5 0.06
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.33
Consensus pattern (12 bp):
AATATATAATAA
Found at i:83704784 original size:26 final size:26
Alignment explanation
Indices: 83704748--83704857 Score: 86
Period size: 26 Copynumber: 4.2 Consensus size: 26
83704738 TAATTATATA
*
83704748 ATATATAATAAAATATAGTGAAT-AAT
1 ATATATAATAAAATATA-TAAATAAAT
*
83704774 ATATATAATAAAATGTATAAATCAAAAT
1 ATATATAATAAAATATATAAAT--AAAT
*
83704802 ATATATAAT-AAA-ATGTAAATAATAT
1 ATATATAATAAAATATATAAATAA-AT
* *
83704827 AATAAATAATAAAA-ATA-ATATATAAT
1 -ATATATAATAAAATATATAAATA-AAT
83704853 ATATA
1 ATATA
83704858 ATAGATTTTT
Statistics
Matches: 69, Mismatches: 8, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
24 2 0.03
25 10 0.14
26 36 0.52
27 9 0.13
28 12 0.17
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.34
Consensus pattern (26 bp):
ATATATAATAAAATATATAAATAAAT
Found at i:83704812 original size:19 final size:18
Alignment explanation
Indices: 83704790--83704833 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
83704780 AATAAAATGT
83704790 ATAAATCAAAATATATATA
1 ATAAATCAAAATA-ATATA
**
83704809 ATAAAATGTAAATAATATA
1 AT-AAATCAAAATAATATA
83704828 ATAAAT
1 ATAAAT
83704834 AATAAAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 4 0.18
19 9 0.41
20 9 0.41
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (18 bp):
ATAAATCAAAATAATATA
Found at i:83704830 original size:28 final size:27
Alignment explanation
Indices: 83704723--83704857 Score: 106
Period size: 28 Copynumber: 5.0 Consensus size: 27
83704713 ATTATACCTA
83704723 ATAA-AAAATAATAGATAAT-TATATAATAT
1 ATAATAAAAT-ATA-ATAATATA-AT-ATAT
* *
83704752 ATAATAAAATATAGTGA-ATAATATAT
1 ATAATAAAATATAATAATATAATATAT
* *
83704778 ATAATAAAATGT-ATAAATCAAAATATAT
1 ATAATAAAATATAAT-AAT-ATAATATAT
*
83704806 ATAATAAAATGTAAATAATATAATA-A-
1 ATAATAAAATAT-AATAATATAATATAT
83704832 ATAATAAAA-ATAAT-ATATAATATAT
1 ATAATAAAATATAATAATATAATATAT
83704857 A
1 A
83704858 ATAGATTTTT
Statistics
Matches: 89, Mismatches: 8, Indels: 22
0.75 0.07 0.18
Matches are distributed among these distances:
23 8 0.09
24 4 0.04
25 3 0.03
26 25 0.28
27 3 0.03
28 29 0.33
29 10 0.11
30 7 0.08
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.33
Consensus pattern (27 bp):
ATAATAAAATATAATAATATAATATAT
Found at i:83704839 original size:19 final size:19
Alignment explanation
Indices: 83704798--83704860 Score: 53
Period size: 19 Copynumber: 3.4 Consensus size: 19
83704788 GTATAAATCA
*
83704798 AAATATATATAATAAA-ATGT
1 AAATA-ATATAATAAATA-AT
83704818 AAATAATATAATAAATAAT
1 AAATAATATAATAAATAAT
*
83704837 -AA-AA-ATAATATATAAT
1 AAATAATATAATAAATAAT
*
83704853 ATATAATA
1 AAATAATA
83704861 GATTTTTTAC
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
16 11 0.31
17 3 0.08
18 4 0.11
19 12 0.33
20 6 0.17
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (19 bp):
AAATAATATAATAAATAAT
Found at i:83704937 original size:16 final size:16
Alignment explanation
Indices: 83704901--83704936 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
83704891 GTAAAATAAA
*
83704901 TAAAATATATAATATT
1 TAAAATAAATAATATT
83704917 TAAAATAAATAA-ATT
1 TAAAATAAATAATATT
83704932 TAAAA
1 TAAAA
83704937 AATTTAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
TAAAATAAATAATATT
Found at i:83704946 original size:25 final size:25
Alignment explanation
Indices: 83704892--83704945 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 25
83704882 ATGTTTATGG
* *
83704892 TAAAATAAATAAAATATATAATATT
1 TAAAATAAATAAAATATAAAAAATT
*
83704917 TAAAATAAAT-AAATTTAAAAAATT
1 TAAAATAAATAAAATATAAAAAATT
83704941 TAAAA
1 TAAAA
83704946 AGGATTAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 16 0.62
25 10 0.38
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (25 bp):
TAAAATAAATAAAATATAAAAAATT
Found at i:83706447 original size:29 final size:29
Alignment explanation
Indices: 83706415--83706597 Score: 105
Period size: 29 Copynumber: 6.5 Consensus size: 29
83706405 TAATCGTCCT
83706415 TTTTCATATTCGATGGTCGAAACCATCCC
1 TTTTCATATTCGATGGTCGAAACCATCCC
*
83706444 TTTTCATTAATCGATGGT------CATCCC
1 TTTTCA-TATTCGATGGTCGAAACCATCCC
* * * * *
83706468 TTTTCATAATCTATAG-CTAAAGCTATCCC
1 TTTTCATATTCGATGGTCGAAA-CCATCCC
* * **
83706497 TTTTCATTTTTGATGGTCGTCACCATCCC
1 TTTTCATATTCGATGGTCGAAACCATCCC
* * **
83706526 TTTTCATAATT-GATAG-CCAAAGTTATCCC
1 TTTTCAT-ATTCGATGGTCGAAA-CCATCCC
* **
83706555 TTTTCATATTTGATGGTCGTCACCATCCC
1 TTTTCATATTCGATGGTCGAAACCATCCC
*
83706584 TTTTCATAATCGAT
1 TTTTCATATTCGAT
83706598 AGCCGAAGTT
Statistics
Matches: 113, Mismatches: 28, Indels: 26
0.68 0.17 0.16
Matches are distributed among these distances:
23 8 0.07
24 12 0.11
28 5 0.04
29 72 0.64
30 16 0.14
ACGTcount: A:0.23, C:0.25, G:0.11, T:0.40
Consensus pattern (29 bp):
TTTTCATATTCGATGGTCGAAACCATCCC
Found at i:83706496 original size:53 final size:55
Alignment explanation
Indices: 83706439--83706618 Score: 163
Period size: 58 Copynumber: 3.2 Consensus size: 55
83706429 GGTCGAAACC
*
83706439 ATCCCTTTTCATTAATCGAT-G-GT-CATCCCTTTTCATAATCT-ATAGCTAAAGCT
1 ATCCCTTTTCATT-ATCGATGGCGTCCATCCCTTTTCATAAT-TGATAGCCAAAGCT
* * *
83706492 ATCCCTTTTCATTTTTGATGGTCGTCACCATCCCTTTTCATAATTGATAGCCAAAGTT
1 ATCCCTTTTCATTATCGATGG-CGT--CCATCCCTTTTCATAATTGATAGCCAAAGCT
* * * *
83706550 ATCCCTTTTCA-TATTTGATGGTCGTCACCATCCCTTTTCATAATCGATAGCCGAAGTT
1 ATCCCTTTTCATTA-TCGATGG-CGT--CCATCCCTTTTCATAATTGATAGCCAAAGCT
*
83706608 ATCCCATTTCA
1 ATCCCTTTTCA
83706619 GTGGTCGATT
Statistics
Matches: 111, Mismatches: 8, Indels: 11
0.85 0.06 0.08
Matches are distributed among these distances:
52 4 0.04
53 14 0.13
55 2 0.02
57 2 0.02
58 89 0.80
ACGTcount: A:0.24, C:0.26, G:0.11, T:0.39
Consensus pattern (55 bp):
ATCCCTTTTCATTATCGATGGCGTCCATCCCTTTTCATAATTGATAGCCAAAGCT
Found at i:83706532 original size:58 final size:58
Alignment explanation
Indices: 83706462--83706618 Score: 244
Period size: 58 Copynumber: 2.7 Consensus size: 58
83706452 AATCGATGGT
* * *
83706462 CATCCCTTTTCATAATCTATAGCTAAAGCTATCCCTTTTCATTTTTGATGGTCGTCAC
1 CATCCCTTTTCATAATCTATAGCCAAAGTTATCCCTTTTCATATTTGATGGTCGTCAC
83706520 CATCCCTTTTCATAAT-TGATAGCCAAAGTTATCCCTTTTCATATTTGATGGTCGTCAC
1 CATCCCTTTTCATAATCT-ATAGCCAAAGTTATCCCTTTTCATATTTGATGGTCGTCAC
* * *
83706578 CATCCCTTTTCATAATCGATAGCCGAAGTTATCCCATTTCA
1 CATCCCTTTTCATAATCTATAGCCAAAGTTATCCCTTTTCA
83706619 GTGGTCGATT
Statistics
Matches: 91, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
57 1 0.01
58 90 0.99
ACGTcount: A:0.24, C:0.26, G:0.11, T:0.39
Consensus pattern (58 bp):
CATCCCTTTTCATAATCTATAGCCAAAGTTATCCCTTTTCATATTTGATGGTCGTCAC
Found at i:83706611 original size:29 final size:29
Alignment explanation
Indices: 83706521--83706618 Score: 99
Period size: 29 Copynumber: 3.4 Consensus size: 29
83706511 GGTCGTCACC
*
83706521 ATCCCTTTTCATAATTGATAGCCAAAGTT
1 ATCCCTTTTCATAATTGATAGCCGAAGTT
* * * * **
83706550 ATCCCTTTTCATATTTGATGGTCGTCA-CC
1 ATCCCTTTTCATAATTGATAGCCG-AAGTT
*
83706579 ATCCCTTTTCATAATCGATAGCCGAAGTT
1 ATCCCTTTTCATAATTGATAGCCGAAGTT
*
83706608 ATCCCATTTCA
1 ATCCCTTTTCA
83706619 GTGGTCGATT
Statistics
Matches: 52, Mismatches: 15, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
28 1 0.02
29 50 0.96
30 1 0.02
ACGTcount: A:0.26, C:0.26, G:0.11, T:0.38
Consensus pattern (29 bp):
ATCCCTTTTCATAATTGATAGCCGAAGTT
Found at i:83712318 original size:64 final size:64
Alignment explanation
Indices: 83712152--83712324 Score: 179
Period size: 68 Copynumber: 2.6 Consensus size: 64
83712142 TGGATGATAC
* * * *
83712152 AGATAGTATGTAGCTAGGTCACATGTATGGTGCTAAGTGCACATCATGTGTACAAGAGAGCTACA
1 AGATA-TATGTAGCTAGGTCGCATGTGT-GTACTAAGTGCACACCATGTGTACAAGAGAGCTAC-
83712217 AG
63 AG
* * * *
83712219 ACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGCTA
1 AGA-TAT-ATGTAGCTAGGTCGCATGTGTG-TACTAAGTGCACACCATGT-GTACAAGAGAGCTA
83712283 C-G
62 CAG
*
83712285 GGATATATGTAGCTAGGTCGCATGTGTAGTACTAAGTGCA
1 AGATATATGTAGCTAGGTCGCATGTGT-GTACTAAGTGCA
83712325 GGGTACTATG
Statistics
Matches: 88, Mismatches: 13, Indels: 13
0.77 0.11 0.11
Matches are distributed among these distances:
64 29 0.33
65 4 0.05
66 2 0.02
67 4 0.05
68 48 0.55
69 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.27
Consensus pattern (64 bp):
AGATATATGTAGCTAGGTCGCATGTGTGTACTAAGTGCACACCATGTGTACAAGAGAGCTACAG
Found at i:83712386 original size:28 final size:28
Alignment explanation
Indices: 83712355--83712438 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
83712345 AACTTCGATC
83712355 ACGTGTGTAGTACTAAGTGTAGGCTACT
1 ACGTGTGTAGTACTAAGTGTAGGCTACT
*
83712383 ACGTGTATCAG-A-T-AGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGTAGGCTACT
* *
83712405 ACGTGTGTAGTACTAAGAGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGTAGGCTACT
83712433 ACGTGT
1 ACGTGT
83712439 ACCGGATAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 16
0.69 0.06 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.18
23 2 0.05
24 3 0.07
25 7 0.16
26 4 0.09
27 2 0.05
28 14 0.32
29 2 0.05
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGTAGGCTACT
Found at i:83712429 original size:50 final size:50
Alignment explanation
Indices: 83712298--83712498 Score: 242
Period size: 50 Copynumber: 4.0 Consensus size: 50
83712288 TATATGTAGC
* * * *
83712298 TAGGTCGCATGTGTAGTACTAAGTGCAGGGTACTATGTGTACCCGATAACT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T
* * * * * *
83712349 TCGATCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATAGT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAAT
* * *
83712399 TAGGTCACGTGTGTAGTACTAAGAGCAGGCTACTACGTGTACCGGATAAT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAAT
* * *
83712449 T-GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACAAGATAAT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAAT
83712498 T
1 T
83712499 TGGCTACATA
Statistics
Matches: 127, Mismatches: 23, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
49 43 0.34
50 45 0.35
51 39 0.31
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (50 bp):
TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAAT
Found at i:83712549 original size:28 final size:28
Alignment explanation
Indices: 83712518--83712576 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
83712508 ATGTGGCACG
83712518 TATGTGCAAACTTTCCATATATCCGAAT
1 TATGTGCAAACTTTCCATATATCCGAAT
83712546 TATGTGCAAACTTTCCATATATCCGAAT
1 TATGTGCAAACTTTCCATATATCCGAAT
83712574 TAT
1 TAT
83712577 ATTCCGAAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.37
Consensus pattern (28 bp):
TATGTGCAAACTTTCCATATATCCGAAT
Found at i:83714037 original size:26 final size:25
Alignment explanation
Indices: 83714000--83714083 Score: 123
Period size: 26 Copynumber: 3.2 Consensus size: 25
83713990 TGATACAAAT
*
83714000 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTT-CA
*
83714026 TGATAATGGGTTAGGTAAATGTATCT
1 TGATAATGGGTTAGGTAAATGT-TCA
83714052 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATG-TTCA
83714078 TGATAA
1 TGATAA
83714084 GAATTTCATG
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
26 51 0.96
27 2 0.04
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (25 bp):
TGATAATGGGTTAGGTAAATGTTCA
Found at i:83715805 original size:27 final size:26
Alignment explanation
Indices: 83715701--83715815 Score: 131
Period size: 27 Copynumber: 4.3 Consensus size: 26
83715691 TGGAGGAAGC
* *
83715701 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-ATTATCT
* *
83715728 GATCTGGTGGCTTTGCCACATATATCT
1 GTTCTGGTGGCTCTGCCACAT-TATCT
*
83715755 ATTCTGGTGGCTCTGCCACGATTATCT
1 GTTCTGGTGGCTCTGCCAC-ATTATCT
* *
83715782 GTATCTGGTGACTCTGTCACATTATCT
1 GT-TCTGGTGGCTCTGCCACATTATCT
83715809 GTTCTGG
1 GTTCTGG
83715816 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.70
28 17 0.22
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACATTATCT
Found at i:83715808 original size:54 final size:54
Alignment explanation
Indices: 83715702--83715815 Score: 149
Period size: 54 Copynumber: 2.1 Consensus size: 54
83715692 GGAGGAAGCG
* *
83715702 TTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTTTGCCACATATATCTA
1 TTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCTA
* * * * *
83715756 TTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTG
1 TTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCTA
83715810 TTCTGG
1 TTCTGG
83715816 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
54 35 0.67
55 17 0.33
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.38
Consensus pattern (54 bp):
TTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCTA
Found at i:83719811 original size:26 final size:26
Alignment explanation
Indices: 83719775--83719884 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
83719765 TGATACAAAT
83719775 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
83719801 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* * *
83719827 TGATAATGGGTTAGGTAAATGTTTCT
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
83719853 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
83719879 TGATAA
1 TGATAA
83719885 GAATTTCATG
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:83721537 original size:27 final size:27
Alignment explanation
Indices: 83721504--83721616 Score: 120
Period size: 27 Copynumber: 4.2 Consensus size: 27
83721494 GAGGAAGCGT
* *
83721504 TCTGGTGGTTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
83721531 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
83721558 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
83721586 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
83721612 TCTGG
1 TCTGG
83721617 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
26 5 0.07
27 54 0.73
28 15 0.20
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:83721609 original size:54 final size:54
Alignment explanation
Indices: 83721502--83721616 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
83721492 TGGAGGAAGC
* *
83721502 GTTCTGGTGGTTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * * *
83721556 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCT
83721610 GTTCTGG
1 GTTCTGG
83721617 CAGCCATGCT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 36 0.67
55 18 0.33
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:83722077 original size:42 final size:42
Alignment explanation
Indices: 83722025--83722105 Score: 162
Period size: 42 Copynumber: 1.9 Consensus size: 42
83722015 TGAAGTTTTG
83722025 GGTTTTTTTTAAATGTAATAAGCCCGCTTATTTATTTTTGAT
1 GGTTTTTTTTAAATGTAATAAGCCCGCTTATTTATTTTTGAT
83722067 GGTTTTTTTTAAATGTAATAAGCCCGCTTATTTATTTTT
1 GGTTTTTTTTAAATGTAATAAGCCCGCTTATTTATTTTT
83722106 AAATGTATTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.23, C:0.10, G:0.14, T:0.53
Consensus pattern (42 bp):
GGTTTTTTTTAAATGTAATAAGCCCGCTTATTTATTTTTGAT
Found at i:83765819 original size:48 final size:48
Alignment explanation
Indices: 83765675--83765952 Score: 338
Period size: 48 Copynumber: 5.9 Consensus size: 48
83765665 CACGTAGTAA
* * *
83765675 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACAGATT
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
* * * * *
83765723 GAAG-C--TG--ATAGCCCAG-CTATGGTCTTACACGATG-TCTCATATC
1 GATGCCAATGCCATATCCCAGAC-ATGGTCTTACATG-GGATCACATATC
*
83765766 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATACC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
* * * *
83765814 AATGCCAATGCCAT-TGCCCAAACATGGTTTTACATGGGATCACATATT
1 GATGCCAATGCCATAT-CCCAGACATGGTCTTACATGGGATCACATATC
*
83765862 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
*
83765910 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCAC
83765953 TCATAACCCT
Statistics
Matches: 196, Mismatches: 23, Indels: 22
0.81 0.10 0.09
Matches are distributed among these distances:
43 29 0.15
44 2 0.01
45 2 0.01
46 2 0.01
47 3 0.02
48 156 0.80
49 2 0.01
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:83767572 original size:46 final size:46
Alignment explanation
Indices: 83767522--83767693 Score: 281
Period size: 46 Copynumber: 3.7 Consensus size: 46
83767512 TGGTTGAGCA
83767522 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
83767568 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
83767614 TCCGAACTTGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
83767660 CCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
83767694 GGGGCGGGTT
Statistics
Matches: 118, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 118 1.00
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:83767954 original size:19 final size:20
Alignment explanation
Indices: 83767917--83767954 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
83767907 ATAAGGTGGT
83767917 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
83767937 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
83767955 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:83769076 original size:113 final size:113
Alignment explanation
Indices: 83768878--83769094 Score: 371
Period size: 113 Copynumber: 1.9 Consensus size: 113
83768868 ATGATTTTTC
* * *
83768878 TTGTAACTGTGACGCGGGTAGCTAGAAAGCTGTAAATGTAGAAACAAATTATTAGAAGTTCTTAA
1 TTGTAACTATGACGCGAGTAGCTAGAAAGCTGTAAATGTAGAAACAAATGATTAGAAGTTCTTAA
83768943 ATTGAGAAATTATGTTCGGTAACCCCTCAAGCTCGACTCCGGCGACTG
66 ATTGAGAAATTATGTTCGGTAACCCCTCAAGCTCGACTCCGGCGACTG
* * *
83768991 TTGTAACTATGATGCGAGTAGCTAGAAAGCTGTGAATGTAGAAACAAATGATTTGAAGTTCTTAA
1 TTGTAACTATGACGCGAGTAGCTAGAAAGCTGTAAATGTAGAAACAAATGATTAGAAGTTCTTAA
*
83769056 ATTGATAAATTATGTTCGGTAACCCCTCAAGCTCGACTC
66 ATTGAGAAATTATGTTCGGTAACCCCTCAAGCTCGACTC
83769095 TGGTGATGGT
Statistics
Matches: 97, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
113 97 1.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.29
Consensus pattern (113 bp):
TTGTAACTATGACGCGAGTAGCTAGAAAGCTGTAAATGTAGAAACAAATGATTAGAAGTTCTTAA
ATTGAGAAATTATGTTCGGTAACCCCTCAAGCTCGACTCCGGCGACTG
Found at i:83774326 original size:48 final size:48
Alignment explanation
Indices: 83774192--83774326 Score: 134
Period size: 48 Copynumber: 2.8 Consensus size: 48
83774182 TATGTGTGCT
** *
83774192 AGTGTAAGACATGTCTGGGACATGCATTAGCCAC-AG-TA-TGAGAGCC
1 AGTGTAAGACATGTCT-GGACATGCATCGGCCTCGAGATATTGAGAGCC
* ** * *
83774238 ATTGTAAGATGTGTCTAGGACATGCATCGGCCTTGAGATATTTA-AGCC
1 AGTGTAAGACATGTCT-GGACATGCATCGGCCTCGAGATATTGAGAGCC
*
83774286 AGTGTAAGACATGTCTGGCACATGCATCGGCCTCGCGATAT
1 AGTGTAAGACATGTCTGG-ACATGCATCGGCCTCGAGATAT
83774327 ACAAACTAGT
Statistics
Matches: 71, Mismatches: 14, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
46 26 0.37
47 4 0.06
48 39 0.55
49 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGACATGCATCGGCCTCGAGATATTGAGAGCC
Found at i:83774338 original size:48 final size:47
Alignment explanation
Indices: 83774192--83774357 Score: 122
Period size: 48 Copynumber: 3.5 Consensus size: 47
83774182 TATGTGTGCT
** * * *
83774192 AGTGTAAGACATGTCTGGGACATGCATTAGCCAC-AG-TATGA-GAGCC
1 AGTGTAAGACATGTCT-GGACATGCATCGGCCTCGAGATAT-ACAAACC
* ** * ** *
83774238 ATTGTAAGATGTGTCTAGGACATGCATCGGCCTTGAGATATTTAAGCC
1 AGTGTAAGACATGTCT-GGACATGCATCGGCCTCGAGATATACAAACC
* *
83774286 AGTGTAAGACATGTCTGGCACATGCATCGGCCTCGCGATATACAAACT
1 AGTGTAAGACATGTCTGG-ACATGCATCGGCCTCGAGATATACAAACC
* *
83774334 AGTGTAAGACCTATCTGGGACATG
1 AGTGTAAGACATGTCT-GGACATG
83774358 GTGCCAACTT
Statistics
Matches: 94, Mismatches: 21, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
46 26 0.28
47 4 0.04
48 62 0.66
49 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGACATGCATCGGCCTCGAGATATACAAACC
Found at i:83774450 original size:49 final size:49
Alignment explanation
Indices: 83774377--83774501 Score: 146
Period size: 49 Copynumber: 2.6 Consensus size: 49
83774367 TGTTGTGTGT
* * * *
83774377 CAGTGTAATACATGTC-AGGACATGGTATCGACAC-CGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGTATCGAC-CTCGATAGATGAAAGC
* * * *
83774425 CAGTGTAAGACCTGTCTGGGACATGGCATTGACCTCGCTATATGAAAGC
1 CAGTGTAAGACCTGTCTGGGACATGGTATCGACCTCGATAGATGAAAGC
83774474 CAGTGTAAGACCATGTCTGGGACATGGT
1 CAGTGTAAGACC-TGTCTGGGACATGGT
83774502 GTCGGCATCT
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
48 15 0.23
49 36 0.55
50 14 0.22
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGTATCGACCTCGATAGATGAAAGC
Found at i:83775730 original size:20 final size:21
Alignment explanation
Indices: 83775692--83775730 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
83775682 TTATAATGAA
*
83775692 CACACGGGCTTGTTGCCCTTC
1 CACACGGGCGTGTTGCCCTTC
83775713 CACACGGGCGTG-TGCCCT
1 CACACGGGCGTGTTGCCCT
83775731 GTTTCAAGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.10, C:0.38, G:0.28, T:0.23
Consensus pattern (21 bp):
CACACGGGCGTGTTGCCCTTC
Found at i:83778090 original size:43 final size:42
Alignment explanation
Indices: 83778024--83778138 Score: 115
Period size: 43 Copynumber: 2.7 Consensus size: 42
83778014 AGATCGTACA
* * * *
83778024 ATGCCAACGTCCCAGGC-GTGGTCTTACATGCAATCAAATATCG
1 ATGCCAACATCCCAGACAG-GGTCTTACATGAAACCAAATA-CG
*** * *
83778067 ATGCCATTGTCCCAGACAGGGTCTTACACGAAACCAGATACG
1 ATGCCAACATCCCAGACAGGGTCTTACATGAAACCAAATACG
*
83778109 ATGCCAACATCCCAGACGGGGTCTTACATG
1 ATGCCAACATCCCAGACAGGGTCTTACATG
83778139 TAAATCATAA
Statistics
Matches: 59, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
42 27 0.46
43 31 0.53
44 1 0.02
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.21
Consensus pattern (42 bp):
ATGCCAACATCCCAGACAGGGTCTTACATGAAACCAAATACG
Found at i:83791724 original size:137 final size:138
Alignment explanation
Indices: 83791453--83791716 Score: 322
Period size: 137 Copynumber: 1.9 Consensus size: 138
83791443 GTAAAATGGG
* * * *
83791453 TCTGCTCAAACAAGCTGTCGGTCAGAATGTAAGCTACACAATGCTTCTCACACAAGCTGTCGAGT
1 TCTGCTCAAACAAGCTATCAGTCAGAACGTAAGCTACACAATGCTTCTCACACAAGCTGTCAAGT
* * * *
83791518 ATCCGCAACTAATGACGGACCTCAGCCATCGATAGGATATTCAAGACCAGCACCCGAAACATACT
66 ATCCGCAACTAATGACGAAACTCAGCCATCGATAGGACATTCAAGACCAACACCCGAAACATACT
83791583 AACCTGGA
131 AACCTGGA
* * **
83791591 TCTGCTCACACAAGCTATCAGTCAGAACGT-AGCTATACGGTG-TTGCTCACACAAGCTGTCAAG
1 TCTGCTCAAACAAGCTATCAGTCAGAACGTAAGCTACACAATGCTT-CTCACACAAGCTGTCAAG
* * *
83791654 TATCCGCAAC-ACATGTCGAAACTCAGTCGC-T-GGTAGGACATTCAAGACCAACACCTGAAACA
65 TATCCGCAACTA-ATGACGAAACTCAG-C-CATCGATAGGACATTCAAGACCAACACCCGAAACA
83791716 T
127 T
83791717 GGTAACCTTA
Statistics
Matches: 107, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
136 3 0.03
137 75 0.70
138 28 0.26
139 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.19, T:0.21
Consensus pattern (138 bp):
TCTGCTCAAACAAGCTATCAGTCAGAACGTAAGCTACACAATGCTTCTCACACAAGCTGTCAAGT
ATCCGCAACTAATGACGAAACTCAGCCATCGATAGGACATTCAAGACCAACACCCGAAACATACT
AACCTGGA
Found at i:83795275 original size:21 final size:21
Alignment explanation
Indices: 83795251--83795318 Score: 52
Period size: 22 Copynumber: 3.2 Consensus size: 21
83795241 TCATGAATGG
83795251 TAAAATTACCATTTTAACTAA
1 TAAAATTACCATTTTAACTAA
* *
83795272 TAAAACTCTA-CTTTTTCA-T-A
1 TAAAA-T-TACCATTTTAACTAA
* *
83795292 GAAAATTAGCCCTTTTAACTAA
1 TAAAATTA-CCATTTTAACTAA
83795314 TAAAA
1 TAAAA
83795319 CTCTACTTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 11
0.67 0.12 0.21
Matches are distributed among these distances:
18 2 0.06
19 1 0.03
20 11 0.31
21 7 0.20
22 12 0.34
23 2 0.06
ACGTcount: A:0.44, C:0.16, G:0.03, T:0.37
Consensus pattern (21 bp):
TAAAATTACCATTTTAACTAA
Found at i:83795310 original size:42 final size:41
Alignment explanation
Indices: 83795252--83795331 Score: 142
Period size: 42 Copynumber: 1.9 Consensus size: 41
83795242 CATGAATGGT
83795252 AAAATTACCATTTTAACTAATAAAACTCTACTTTTTCATAG
1 AAAATTACCATTTTAACTAATAAAACTCTACTTTTTCATAG
*
83795293 AAAATTAGCCCTTTTAACTAATAAAACTCTACTTTTTCA
1 AAAATTA-CCATTTTAACTAATAAAACTCTACTTTTTCA
83795332 CATTTTTCAA
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
41 7 0.19
42 30 0.81
ACGTcount: A:0.40, C:0.19, G:0.03, T:0.39
Consensus pattern (41 bp):
AAAATTACCATTTTAACTAATAAAACTCTACTTTTTCATAG
Found at i:83795327 original size:21 final size:21
Alignment explanation
Indices: 83795262--83795328 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
83795252 AAAATTACCA
83795262 TTTTAACTAATAAAACTCTAC
1 TTTTAACTAATAAAACTCTAC
* *
83795283 TTTT---TCATAGAAAAT-TAGCCC
1 TTTTAACTAATA-AAACTCTA---C
83795304 TTTTAACTAATAAAACTCTAC
1 TTTTAACTAATAAAACTCTAC
83795325 TTTT
1 TTTT
83795329 TCACATTTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 16
0.63 0.07 0.30
Matches are distributed among these distances:
18 6 0.18
19 4 0.12
21 14 0.41
23 4 0.12
24 6 0.18
ACGTcount: A:0.37, C:0.18, G:0.03, T:0.42
Consensus pattern (21 bp):
TTTTAACTAATAAAACTCTAC
Found at i:83797112 original size:25 final size:25
Alignment explanation
Indices: 83797076--83797124 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
83797066 AAATAGTATG
83797076 TAATATAATTGATATATGATATATA
1 TAATATAATTGATATATGATATATA
*
83797101 TAATATAGTTGATATATGATATAT
1 TAATATAATTGATATATGATATAT
83797125 GACATGAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.45, C:0.00, G:0.10, T:0.45
Consensus pattern (25 bp):
TAATATAATTGATATATGATATATA
Done.