Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 253 of 276
Found at i:83803122 original size:33 final size:33
Alignment explanation
Indices: 83803080--83803147 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
83803070 TTATGGAGCA
83803080 TTACCAGACTTCCAATACATAAAAAAATATACT
1 TTACCAGACTTCCAATACATAAAAAAATATACT
83803113 TTACCAGACTTCCAATACATAAAAAAATATACT
1 TTACCAGACTTCCAATACATAAAAAAATATACT
83803146 TT
1 TT
83803148 TATCATGCAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.47, C:0.21, G:0.03, T:0.29
Consensus pattern (33 bp):
TTACCAGACTTCCAATACATAAAAAAATATACT
Found at i:83807196 original size:3 final size:3
Alignment explanation
Indices: 83807188--83807228 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
83807178 TTTATCATTA
83807188 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
83807229 CTCTCTTTTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
CTT
Found at i:83808325 original size:13 final size:13
Alignment explanation
Indices: 83808307--83808332 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
83808297 ATATTATAAT
83808307 TATTTTATGTTAA
1 TATTTTATGTTAA
83808320 TATTTTATGTTAA
1 TATTTTATGTTAA
83808333 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:83809764 original size:40 final size:40
Alignment explanation
Indices: 83809709--83810714 Score: 1926
Period size: 40 Copynumber: 25.2 Consensus size: 40
83809699 GGACTAAGAT
*
83809709 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCAAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
83809749 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
83809789 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
83809829 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
83809869 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
83809909 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
83809949 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
83809989 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
83810029 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
83810069 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
83810109 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
83810149 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
83810189 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
83810229 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
83810269 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
83810309 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
83810349 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
83810389 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
83810429 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
83810469 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
83810509 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
83810549 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
83810589 CCGAAGGCATTTGTGCTAGTGACTATATCCAGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
83810629 CCGAAGGCATCTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
83810669 CCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
83810708 CCGAAGG
1 CCGAAGG
83810715 TACTTGGGTT
Statistics
Matches: 954, Mismatches: 11, Indels: 3
0.99 0.01 0.00
Matches are distributed among these distances:
39 15 0.02
40 938 0.98
41 1 0.00
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:83812549 original size:27 final size:27
Alignment explanation
Indices: 83812354--83812559 Score: 238
Period size: 27 Copynumber: 7.7 Consensus size: 27
83812344 TGATATAATG
*
83812354 ACTGTTTTGCCCTTA-GTGGTAAAATG
1 ACTGTTTTGCCCTTATGTGGTAAAATA
* *
83812380 ACTGTTTTGCGCTTAAGTGGTAAAATA
1 ACTGTTTTGCCCTTATGTGGTAAAATA
* * *
83812407 ACTGTTTTGCCCTTATTTGCTAAGATA
1 ACTGTTTTGCCCTTATGTGGTAAAATA
*
83812434 ACTGTTTTGCCCTTATGTGGTAAGATA
1 ACTGTTTTGCCCTTATGTGGTAAAATA
* *
83812461 ACTCTTTTACCCTTATGTGGTAAAATA
1 ACTGTTTTGCCCTTATGTGGTAAAATA
*
83812488 ACTATTTTGCCCTTGA-GTGGTAAAATA
1 ACTGTTTTGCCCTT-ATGTGGTAAAATA
* * * *
83812515 ATTGTTTTGCCCTTATATGGTAAGATG
1 ACTGTTTTGCCCTTATGTGGTAAAATA
* *
83812542 ACTATTTTTCCC-TATGTG
1 ACTGTTTTGCCCTTATGTG
83812560 ATGTATATAT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
26 20 0.13
27 133 0.86
28 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.41
Consensus pattern (27 bp):
ACTGTTTTGCCCTTATGTGGTAAAATA
Found at i:83814641 original size:27 final size:26
Alignment explanation
Indices: 83814611--83814672 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
83814601 ATTTACTAAA
*
83814611 ATACCCCTAAGTACG-AAAATTACCATT
1 ATACCCCTAAGT--GTAAAATGACCATT
* *
83814638 ATACCCCTAGGTGTAAAATGACCGTT
1 ATACCCCTAAGTGTAAAATGACCATT
83814664 ATACCCCTA
1 ATACCCCTA
83814673 GGGTTAATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 1 0.03
26 19 0.61
27 11 0.35
ACGTcount: A:0.35, C:0.27, G:0.11, T:0.26
Consensus pattern (26 bp):
ATACCCCTAAGTGTAAAATGACCATT
Found at i:83814841 original size:55 final size:53
Alignment explanation
Indices: 83814776--83814890 Score: 149
Period size: 54 Copynumber: 2.1 Consensus size: 53
83814766 TGGGGGAAGC
* * **
83814776 GTTCTGGTGGCTATGCCATAATTATCTGTTTCTGGTGGTTATGCCACAAATATCT
1 GTTCTGGTGGCTACGCCATAA-TATCTGTATCTGGTGACTATGCCAC-AATATCT
* * *
83814831 GTTCTGGTGGCTCCGCCATAATATCTGTATCTGGTGACTCTGTCACAATATCT
1 GTTCTGGTGGCTACGCCATAATATCTGTATCTGGTGACTATGCCACAATATCT
83814884 GTTCTGG
1 GTTCTGG
83814891 CAGCCATGCT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
53 14 0.26
54 20 0.38
55 19 0.36
ACGTcount: A:0.18, C:0.21, G:0.23, T:0.38
Consensus pattern (53 bp):
GTTCTGGTGGCTACGCCATAATATCTGTATCTGGTGACTATGCCACAATATCT
Found at i:83814848 original size:27 final size:27
Alignment explanation
Indices: 83814776--83814890 Score: 117
Period size: 27 Copynumber: 4.3 Consensus size: 27
83814766 TGGGGGAAGC
* *
83814776 GTTCTGGTGGCTATGCCATAATTATCT
1 GTTCTGGTGGCTATGCCACAAATATCT
*
83814803 GTTTCTGGTGGTTATGCCACAAATATCT
1 G-TTCTGGTGGCTATGCCACAAATATCT
** *
83814831 GTTCTGGTGGCTCCGCCA-TAATATCT
1 GTTCTGGTGGCTATGCCACAAATATCT
* * *
83814857 GTATCTGGTGACTCTGTCAC-AATATCT
1 GT-TCTGGTGGCTATGCCACAAATATCT
83814884 GTTCTGG
1 GTTCTGG
83814891 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
26 14 0.19
27 37 0.49
28 24 0.32
ACGTcount: A:0.18, C:0.21, G:0.23, T:0.38
Consensus pattern (27 bp):
GTTCTGGTGGCTATGCCACAAATATCT
Found at i:83815363 original size:39 final size:40
Alignment explanation
Indices: 83815269--83815363 Score: 147
Period size: 40 Copynumber: 2.4 Consensus size: 40
83815259 TGGCCGGCCA
*
83815269 GGCTAAGTCCCGAAGGCATCTGTGCTAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATCTGTGCGAGTTACTATATCCG
* *
83815309 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCC-
1 GGCTAAGTCCCGAAGGCATCTGTGCGAGTTACTATATCCG
*
83815348 GGCTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGG
83815364 TACTTGGGTT
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
39 15 0.29
40 36 0.71
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATCTGTGCGAGTTACTATATCCG
Found at i:83817198 original size:27 final size:27
Alignment explanation
Indices: 83817003--83817208 Score: 238
Period size: 27 Copynumber: 7.7 Consensus size: 27
83816993 TGATATAATG
*
83817003 ACTGTTTTGCCCTTA-GTGGTAAAATG
1 ACTGTTTTGCCCTTATGTGGTAAAATA
* *
83817029 ACTGTTTTGCGCTTAAGTGGTAAAATA
1 ACTGTTTTGCCCTTATGTGGTAAAATA
* * *
83817056 ACTGTTTTGCCCTTATTTGCTAAGATA
1 ACTGTTTTGCCCTTATGTGGTAAAATA
*
83817083 ACTGTTTTGCCCTTATGTGGTAAGATA
1 ACTGTTTTGCCCTTATGTGGTAAAATA
* *
83817110 ACTCTTTTACCCTTATGTGGTAAAATA
1 ACTGTTTTGCCCTTATGTGGTAAAATA
*
83817137 ACTATTTTGCCCTTGA-GTGGTAAAATA
1 ACTGTTTTGCCCTT-ATGTGGTAAAATA
* * * *
83817164 ATTGTTTTGCCCTTATATGGTAAGATG
1 ACTGTTTTGCCCTTATGTGGTAAAATA
* *
83817191 ACTATTTTTCCC-TATGTG
1 ACTGTTTTGCCCTTATGTG
83817209 ATGTATATAT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
26 20 0.13
27 133 0.86
28 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.41
Consensus pattern (27 bp):
ACTGTTTTGCCCTTATGTGGTAAAATA
Found at i:83819290 original size:27 final size:26
Alignment explanation
Indices: 83819260--83819321 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
83819250 ATTTACTAAA
*
83819260 ATACCCCTAAGTACG-AAAATTACCATT
1 ATACCCCTAAGT--GTAAAATGACCATT
* *
83819287 ATACCCCTAGGTGTAAAATGACCGTT
1 ATACCCCTAAGTGTAAAATGACCATT
83819313 ATACCCCTA
1 ATACCCCTA
83819322 GGGTTAATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 1 0.03
26 19 0.61
27 11 0.35
ACGTcount: A:0.35, C:0.27, G:0.11, T:0.26
Consensus pattern (26 bp):
ATACCCCTAAGTGTAAAATGACCATT
Found at i:83819490 original size:55 final size:53
Alignment explanation
Indices: 83819425--83819539 Score: 149
Period size: 54 Copynumber: 2.1 Consensus size: 53
83819415 TGGGGGAAGC
* * **
83819425 GTTCTGGTGGCTATGCCATAATTATCTGTTTCTGGTGGTTATGCCACAAATATCT
1 GTTCTGGTGGCTACGCCATAA-TATCTGTATCTGGTGACTATGCCAC-AATATCT
* * *
83819480 GTTCTGGTGGCTCCGCCATAATATCTGTATCTGGTGACTCTGTCACAATATCT
1 GTTCTGGTGGCTACGCCATAATATCTGTATCTGGTGACTATGCCACAATATCT
83819533 GTTCTGG
1 GTTCTGG
83819540 CAGCCATGCT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
53 14 0.26
54 20 0.38
55 19 0.36
ACGTcount: A:0.18, C:0.21, G:0.23, T:0.38
Consensus pattern (53 bp):
GTTCTGGTGGCTACGCCATAATATCTGTATCTGGTGACTATGCCACAATATCT
Found at i:83819497 original size:27 final size:27
Alignment explanation
Indices: 83819425--83819539 Score: 117
Period size: 27 Copynumber: 4.3 Consensus size: 27
83819415 TGGGGGAAGC
* *
83819425 GTTCTGGTGGCTATGCCATAATTATCT
1 GTTCTGGTGGCTATGCCACAAATATCT
*
83819452 GTTTCTGGTGGTTATGCCACAAATATCT
1 G-TTCTGGTGGCTATGCCACAAATATCT
** *
83819480 GTTCTGGTGGCTCCGCCA-TAATATCT
1 GTTCTGGTGGCTATGCCACAAATATCT
* * *
83819506 GTATCTGGTGACTCTGTCAC-AATATCT
1 GT-TCTGGTGGCTATGCCACAAATATCT
83819533 GTTCTGG
1 GTTCTGG
83819540 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
26 14 0.19
27 37 0.49
28 24 0.32
ACGTcount: A:0.18, C:0.21, G:0.23, T:0.38
Consensus pattern (27 bp):
GTTCTGGTGGCTATGCCACAAATATCT
Found at i:83821500 original size:39 final size:39
Alignment explanation
Indices: 83821446--83821570 Score: 187
Period size: 39 Copynumber: 3.2 Consensus size: 39
83821436 GAAATGTGTA
83821446 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
* *
83821485 TGGAAATATATCCGGGCCAAAGACCCGCAGGCTTCGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
* * * *
83821524 TGGAGATGTATCTGGGCTAAAGACCCGCCGGCTTTGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
*
83821563 TGGTAATA
1 TGGAAATA
83821571 AAATTTCGGG
Statistics
Matches: 75, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 75 1.00
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.23
Consensus pattern (39 bp):
TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
Found at i:83828272 original size:46 final size:46
Alignment explanation
Indices: 83828222--83828493 Score: 472
Period size: 46 Copynumber: 5.9 Consensus size: 46
83828212 TAGGATGGTT
83828222 GAATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
83828268 GAATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
83828314 GAATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
83828360 GAATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
****
83828406 GGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * * *
83828452 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
83828494 GCGGGTTACA
Statistics
Matches: 216, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 216 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
GAATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:83835454 original size:46 final size:46
Alignment explanation
Indices: 83835404--83835579 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
83835394 TGATTGAGCA
83835404 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
83835450 TCCGAACTCGTTGAGTTGAGCCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
83835495 CATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
83835543 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
83835580 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.57
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:83835560 original size:93 final size:93
Alignment explanation
Indices: 83835401--83835572 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
83835391 GGATGATTGA
* * * *
83835401 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAGT
83835466 TGAGCCCGAGTTCGTGAGATGTAACTAG
66 TGAGCCCGAGTTCGTGAGATGTAACTAG
*
83835494 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAGT
*
83835559 TGAGTCCGAGTTCG
66 TGAGCCCGAGTTCG
83835573 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGCCCGAGTTCGTGAGATGTAACTAG
Found at i:83844363 original size:299 final size:299
Alignment explanation
Indices: 83843825--83844400 Score: 1066
Period size: 299 Copynumber: 1.9 Consensus size: 299
83843815 TGGGTGGAAG
83843825 ATATATGAGTCTATATTCAGGGAAAATTAACGGCAATTGATTTTGAGTTTTGTAGCTCCAGTTAT
1 ATATATGAGTCTATATTCAGGGAAAATTAACGGCAATTGATTTTGAGTTTTGTAGCTCCAGTTAT
83843890 AAATAATTTAGTGACTATTGCTCAGGAAAACAACTTGTAGTGAATATGTGAATTTGTTGTAAACA
66 AAATAATTTAGTGACTATTGCTCAGGAAAACAACTTGTAGTGAATATGTGAATTTGTTGTAAACA
83843955 TTGATGAAACTATTTGAGTTGCTTATAAGCTATTGCTGAAATTGATGTACAAGACAAATATATAT
131 TTGATGAAACTATTTGAGTTGCTTATAAGCTATTGCTGAAATTGATGTACAAGACAAATATATAT
** **
83844020 GTGTGTGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGATTGGCTAGT
196 AAGTCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGATTGGCTAGT
83844085 GTGAAATATGTAGGAGAGAATGGCTAATGTGAAATATGT
261 GTGAAATATGTAGGAGAGAATGGCTAATGTGAAATATGT
83844124 ATATATGAGTCTATATTCAGGGAAAATTAACGGCAATTGATTTTGAGTTTTGTAGCTCCAGTTAT
1 ATATATGAGTCTATATTCAGGGAAAATTAACGGCAATTGATTTTGAGTTTTGTAGCTCCAGTTAT
83844189 AAATAATTTAGTGACTATTGCTCAGGAAAACAACTTGTAGTGAATATGTGAATTTGTTGTAAACA
66 AAATAATTTAGTGACTATTGCTCAGGAAAACAACTTGTAGTGAATATGTGAATTTGTTGTAAACA
*
83844254 TTGATGAAACTATTTGAGTTGCTTATAAGCTATTGCTGAAATTGATGTACAAGACAAATAGTGGT
131 TTGATGAAACTATTTGAGTTGCTTATAAGCTATTGCTGAAATTGATGTACAAGACAAATA-T-AT
*
83844319 A-AAG-CCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGATTGGCTA
194 ATAAGTCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGATTGGCTA
83844382 GTGTGAAATATGTAGGAGA
259 GTGTGAAATATGTAGGAGA
83844401 TGTGTGTATA
Statistics
Matches: 269, Mismatches: 6, Indels: 4
0.96 0.02 0.01
Matches are distributed among these distances:
299 265 0.99
300 2 0.01
301 2 0.01
ACGTcount: A:0.34, C:0.09, G:0.23, T:0.34
Consensus pattern (299 bp):
ATATATGAGTCTATATTCAGGGAAAATTAACGGCAATTGATTTTGAGTTTTGTAGCTCCAGTTAT
AAATAATTTAGTGACTATTGCTCAGGAAAACAACTTGTAGTGAATATGTGAATTTGTTGTAAACA
TTGATGAAACTATTTGAGTTGCTTATAAGCTATTGCTGAAATTGATGTACAAGACAAATATATAT
AAGTCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGATTGGCTAGT
GTGAAATATGTAGGAGAGAATGGCTAATGTGAAATATGT
Found at i:83844592 original size:37 final size:37
Alignment explanation
Indices: 83844542--83844644 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
83844532 GGAAATATAT
83844542 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
83844579 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
83844616 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
83844645 GGACTATTTG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:83846050 original size:106 final size:106
Alignment explanation
Indices: 83845913--83846124 Score: 424
Period size: 106 Copynumber: 2.0 Consensus size: 106
83845903 GGATTTTGTA
83845913 TTAATGCCATTGCATGCTAAATATGAAGCTTGTTAATGATGCATGTGATGGTGGCTTGATGATTC
1 TTAATGCCATTGCATGCTAAATATGAAGCTTGTTAATGATGCATGTGATGGTGGCTTGATGATTC
83845978 TTGAACCTCCTTTTTAGCATTTTTGAGTGAGCACATATGTG
66 TTGAACCTCCTTTTTAGCATTTTTGAGTGAGCACATATGTG
83846019 TTAATGCCATTGCATGCTAAATATGAAGCTTGTTAATGATGCATGTGATGGTGGCTTGATGATTC
1 TTAATGCCATTGCATGCTAAATATGAAGCTTGTTAATGATGCATGTGATGGTGGCTTGATGATTC
83846084 TTGAACCTCCTTTTTAGCATTTTTGAGTGAGCACATATGTG
66 TTGAACCTCCTTTTTAGCATTTTTGAGTGAGCACATATGTG
83846125 CATTGGTTGC
Statistics
Matches: 106, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
106 106 1.00
ACGTcount: A:0.25, C:0.14, G:0.23, T:0.39
Consensus pattern (106 bp):
TTAATGCCATTGCATGCTAAATATGAAGCTTGTTAATGATGCATGTGATGGTGGCTTGATGATTC
TTGAACCTCCTTTTTAGCATTTTTGAGTGAGCACATATGTG
Found at i:83846903 original size:39 final size:41
Alignment explanation
Indices: 83846808--83846991 Score: 199
Period size: 40 Copynumber: 4.6 Consensus size: 41
83846798 TTGGATGATG
*
83846808 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATA
*
83846847 TCCGGACTAAGAT-CCGAAGGCATTTGTGCG-AGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAG-TACTAATA
83846887 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATA
* *
83846926 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
* **
83846966 ACCGGGCTTTGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
83846992 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 10, Indels: 19
0.81 0.06 0.12
Matches are distributed among these distances:
39 54 0.43
40 60 0.48
41 11 0.09
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
Found at i:83846943 original size:79 final size:81
Alignment explanation
Indices: 83846808--83846991 Score: 213
Period size: 79 Copynumber: 2.3 Consensus size: 81
83846798 TTGGATGATG
83846808 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
83846871 TGTGCGAGA-TACTA-A
66 TGTGCGA-ATTACTATA
* * **
83846886 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGTTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
83846947 ATTTGTGCGAATTACTATA
63 ATTTGTGCGAATTACTATA
* **
83846966 ACCGGGCTTTGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
83846992 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 7, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
78 11 0.12
79 57 0.63
80 23 0.25
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
TGTGCGAATTACTATA
Found at i:83847013 original size:79 final size:79
Alignment explanation
Indices: 83846860--83847024 Score: 185
Period size: 79 Copynumber: 2.1 Consensus size: 79
83846850 GGACTAAGAT
* ** *
83846860 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
83846925 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
**
83846939 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTTTGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* *
83847001 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
83847018 CCGAAGG
1 CCGAAGG
83847025 TACGTGATTT
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
78 3 0.04
79 45 0.62
80 25 0.34
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:83847942 original size:53 final size:53
Alignment explanation
Indices: 83847862--83847967 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
83847852 GTTAAGAGAT
*
83847862 ATTCAGGTTCTCGTGAGACAGGGCCAGAATGGTTTCTGGATTTCCTGTTCCGA
1 ATTCAGGTTCTCGTGAGACAGGGCCAGAACGGTTTCTGGATTTCCTGTTCCGA
83847915 ATTCAGGTTCTCGTGAGACAGGGCCAGAACGGTTTCTGGATTTCCTGTTCCGA
1 ATTCAGGTTCTCGTGAGACAGGGCCAGAACGGTTTCTGGATTTCCTGTTCCGA
83847968 CTTTGGAAAT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.31
Consensus pattern (53 bp):
ATTCAGGTTCTCGTGAGACAGGGCCAGAACGGTTTCTGGATTTCCTGTTCCGA
Found at i:83854878 original size:39 final size:40
Alignment explanation
Indices: 83854783--83855044 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
83854773 TTGAATGATG
*
83854783 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
83854821 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
83854862 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
83854901 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
83854940 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
83854979 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
83855018 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
83855045 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:83855696 original size:32 final size:33
Alignment explanation
Indices: 83855636--83855698 Score: 83
Period size: 32 Copynumber: 1.9 Consensus size: 33
83855626 TGCAGTAGCA
** *
83855636 GTCTGGGCCTGAGCCCTATTCAGTAACAGTGCT
1 GTCTGGGCCTGAGCCCTAAACAGAAACAGTGCT
*
83855669 GTCTGGGCCT-TGCCCTAAACAGAAACAGTG
1 GTCTGGGCCTGAGCCCTAAACAGAAACAGTG
83855699 TGGGCCTAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
32 16 0.62
33 10 0.38
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (33 bp):
GTCTGGGCCTGAGCCCTAAACAGAAACAGTGCT
Found at i:83855889 original size:27 final size:27
Alignment explanation
Indices: 83855836--83855904 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 27
83855826 CAATATCGCA
** *
83855836 GCAAAGCTGCCAGTAACAGTAAATGTG
1 GCAAAGCCACCAGTAACAATAAATGTG
**
83855863 GCAAAGCCACCAGTAACAATAGTTGTG
1 GCAAAGCCACCAGTAACAATAAATGTG
**
83855890 GCGGAGCCACCAGTA
1 GCAAAGCCACCAGTA
83855905 TAGTACTTCG
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.35, C:0.23, G:0.26, T:0.16
Consensus pattern (27 bp):
GCAAAGCCACCAGTAACAATAAATGTG
Found at i:83856353 original size:17 final size:19
Alignment explanation
Indices: 83856331--83856372 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
83856321 AATCTACATG
83856331 GGCCCACA-AGCCCA-TTT
1 GGCCCACACAGCCCATTTT
*
83856348 GGCCCACACGGCCCATTTT
1 GGCCCACACAGCCCATTTT
83856367 GGCCCA
1 GGCCCA
83856373 ACGTGACCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 8 0.36
18 5 0.23
19 9 0.41
ACGTcount: A:0.19, C:0.43, G:0.21, T:0.17
Consensus pattern (19 bp):
GGCCCACACAGCCCATTTT
Found at i:83862841 original size:65 final size:65
Alignment explanation
Indices: 83862762--83863084 Score: 646
Period size: 65 Copynumber: 5.0 Consensus size: 65
83862752 CTTGTTTTGA
83862762 TATCCCAGGATACTGATCCAAGATAAGCTCTTATTCAGAGGAGGAATAGACCCTGTCTAAGAGCT
1 TATCCCAGGATACTGATCCAAGATAAGCTCTTATTCAGAGGAGGAATAGACCCTGTCTAAGAGCT
83862827 TATCCCAGGATACTGATCCAAGATAAGCTCTTATTCAGAGGAGGAATAGACCCTGTCTAAGAGCT
1 TATCCCAGGATACTGATCCAAGATAAGCTCTTATTCAGAGGAGGAATAGACCCTGTCTAAGAGCT
83862892 TATCCCAGGATACTGATCCAAGATAAGCTCTTATTCAGAGGAGGAATAGACCCTGTCTAAGAGCT
1 TATCCCAGGATACTGATCCAAGATAAGCTCTTATTCAGAGGAGGAATAGACCCTGTCTAAGAGCT
83862957 TATCCCAGGATACTGATCCAAGATAAGCTCTTATTCAGAGGAGGAATAGACCCTGTCTAAGAGCT
1 TATCCCAGGATACTGATCCAAGATAAGCTCTTATTCAGAGGAGGAATAGACCCTGTCTAAGAGCT
83863022 TATCCCAGGATACTGATCCAAGATAAGCTCTTATTCAGAGGAGGAATAGACCCTGTCTAAGAG
1 TATCCCAGGATACTGATCCAAGATAAGCTCTTATTCAGAGGAGGAATAGACCCTGTCTAAGAG
83863085 TACATTTGTC
Statistics
Matches: 258, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 258 1.00
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (65 bp):
TATCCCAGGATACTGATCCAAGATAAGCTCTTATTCAGAGGAGGAATAGACCCTGTCTAAGAGCT
Found at i:83863837 original size:41 final size:41
Alignment explanation
Indices: 83863791--83863872 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
83863781 ACATATCGAT
*
83863791 GCCATGGTCTTACTCGCACACATAAATCAGAATTCTATGTC
1 GCCATGGTCTTAATCGCACACATAAATCAGAATTCTATGTC
*
83863832 GCCATGGTCTTAATCTCACACATAAATCAGAATTCTATGTC
1 GCCATGGTCTTAATCGCACACATAAATCAGAATTCTATGTC
83863873 ATGACATATG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.30
Consensus pattern (41 bp):
GCCATGGTCTTAATCGCACACATAAATCAGAATTCTATGTC
Found at i:83865213 original size:21 final size:21
Alignment explanation
Indices: 83865187--83865233 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
83865177 TCTCATTGCA
*
83865187 TCCTCTATCACCCACGTTGTT
1 TCCTCTAGCACCCACGTTGTT
*
83865208 TCCTCTGGCACCCACGTTGTT
1 TCCTCTAGCACCCACGTTGTT
83865229 TCCTC
1 TCCTC
83865234 AACTCCATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.11, C:0.40, G:0.13, T:0.36
Consensus pattern (21 bp):
TCCTCTAGCACCCACGTTGTT
Found at i:83868714 original size:36 final size:36
Alignment explanation
Indices: 83868662--83868734 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
83868652 AAATCTCGTG
83868662 TTCTGCACTGAATTCTCTTCAGCTAACCATGGACAA
1 TTCTGCACTGAATTCTCTTCAGCTAACCATGGACAA
** *
83868698 TTCTGCACTGGCTTCTCTTCAGCTAACCCTGGACAA
1 TTCTGCACTGAATTCTCTTCAGCTAACCATGGACAA
83868734 T
1 T
83868735 CTCAAATATA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.23, C:0.30, G:0.15, T:0.32
Consensus pattern (36 bp):
TTCTGCACTGAATTCTCTTCAGCTAACCATGGACAA
Found at i:83875010 original size:40 final size:40
Alignment explanation
Indices: 83874965--83875059 Score: 127
Period size: 40 Copynumber: 2.4 Consensus size: 40
83874955 ATCTCAAATC
* * *
83874965 ACACACTAAGTGCCATATATAGCCGAAGCTATGTCGAGTT
1 ACACACTAAGTGCCATATATAGCCAAAGCTATGTCGAATA
* * *
83875005 GCACACTAAGTGCCATATGTAGCTAAAGCTATGTCGAATA
1 ACACACTAAGTGCCATATATAGCCAAAGCTATGTCGAATA
*
83875045 ATACACTAAGTGCCA
1 ACACACTAAGTGCCA
83875060 CAAATATTCG
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.24
Consensus pattern (40 bp):
ACACACTAAGTGCCATATATAGCCAAAGCTATGTCGAATA
Found at i:83876421 original size:20 final size:20
Alignment explanation
Indices: 83876398--83876438 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
83876388 AAATAGTAGC
83876398 TCATCCAAATAAACAGTATT
1 TCATCCAAATAAACAGTATT
*
83876418 TCATCCATATAAACAGTATT
1 TCATCCAAATAAACAGTATT
83876438 T
1 T
83876439 ATGCCGGTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.41, C:0.20, G:0.05, T:0.34
Consensus pattern (20 bp):
TCATCCAAATAAACAGTATT
Found at i:83876663 original size:47 final size:50
Alignment explanation
Indices: 83876612--83876705 Score: 122
Period size: 47 Copynumber: 1.9 Consensus size: 50
83876602 TAAACTTTGG
* * **
83876612 CGAGCTGAGAACAGTAAGCTCTTATGAGCT-A-A-ATCGGTAAGCTCCAA
1 CGAGCTAAAAACAGTAAGCTCTTACAAGCTGATATATCGGTAAGCTCCAA
*
83876659 CGAGCTAAAAATAGTAAGCTCTTACAAGCTGATATATCGGTAAGCTC
1 CGAGCTAAAAACAGTAAGCTCTTACAAGCTGATATATCGGTAAGCTC
83876706 ATTCGACTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
47 25 0.64
48 1 0.03
49 1 0.03
50 12 0.31
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.23
Consensus pattern (50 bp):
CGAGCTAAAAACAGTAAGCTCTTACAAGCTGATATATCGGTAAGCTCCAA
Found at i:83890567 original size:27 final size:27
Alignment explanation
Indices: 83890529--83890695 Score: 187
Period size: 27 Copynumber: 6.2 Consensus size: 27
83890519 CCCTATTTAG
* ** *
83890529 AATACCCTTGGTTTACAAAATTACCAA
1 AATACCCTTGATTTGTAAAATTACCGA
* *
83890556 AATACCCTTGGTTTGTAAAATTATCGA
1 AATACCCTTGATTTGTAAAATTACCGA
83890583 AATA-CCTCTGATTTGTAAAATTACCGA
1 AATACCCT-TGATTTGTAAAATTACCGA
**
83890610 AATACCCCCGATTTGTAAAATTACCGA
1 AATACCCTTGATTTGTAAAATTACCGA
* *
83890637 AATA-CCTCTGATTTGCAAAATTACTGA
1 AATACCCT-TGATTTGTAAAATTACCGA
**
83890664 AATACCC-TGATTTGTAAAATTACTAA
1 AATACCCTTGATTTGTAAAATTACCGA
83890690 AATACC
1 AATACC
83890696 TTCAACTTGT
Statistics
Matches: 122, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
26 28 0.23
27 90 0.74
28 4 0.03
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (27 bp):
AATACCCTTGATTTGTAAAATTACCGA
Found at i:83890603 original size:54 final size:53
Alignment explanation
Indices: 83890544--83890696 Score: 216
Period size: 54 Copynumber: 2.8 Consensus size: 53
83890534 CCTTGGTTTA
* * *
83890544 CAAAATTACCAAAATACCCTTGGTTTGTAAAATTATCGAAATACCTCTGATTTG
1 CAAAATTACCGAAATACCC-TGATTTGTAAAATTACCGAAATACCTCTGATTTG
* *
83890598 TAAAATTACCGAAATACCCCCGATTTGTAAAATTACCGAAATACCTCTGATTTG
1 CAAAATTACCGAAATA-CCCTGATTTGTAAAATTACCGAAATACCTCTGATTTG
* **
83890652 CAAAATTACTGAAATACCCTGATTTGTAAAATTACTAAAATACCT
1 CAAAATTACCGAAATACCCTGATTTGTAAAATTACCGAAATACCT
83890697 TCAACTTGTA
Statistics
Matches: 88, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
53 26 0.30
54 59 0.67
55 3 0.03
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (53 bp):
CAAAATTACCGAAATACCCTGATTTGTAAAATTACCGAAATACCTCTGATTTG
Found at i:83890712 original size:80 final size:79
Alignment explanation
Indices: 83890545--83890742 Score: 220
Period size: 80 Copynumber: 2.4 Consensus size: 79
83890535 CTTGGTTTAC
* * *
83890545 AAAATTACCAAAATACCCTTGGTTTGTAAAATTATCGAAATACCTCTGATTTGTAAAATTACCGA
1 AAAATTACC-AAATACCC-TGATTTGCAAAATTATCGAAATACCTCTGATTTGTAAAATTACCAA
* *
83890610 AATACCCCCGATTTGT
64 AATACCCCCAACTTGT
*
83890626 AAAATTACCGAAATACCTCTGATTTGCAAAATTA-CTGAAATACC-CTGATTTGTAAAATTACTA
1 AAAATTACC-AAATACC-CTGATTTGCAAAATTATC-GAAATACCTCTGATTTGTAAAATTACCA
**
83890689 AAATACCTTCAACTTGT
63 AAATACCCCCAACTTGT
* * *
83890706 ACAATTACCAAAGTACCCCCGATTTACAAAATTATCG
1 AAAATTACCAAA-TA-CCCTGATTTGCAAAATTATCG
83890743 TTTTACCCTC
Statistics
Matches: 100, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
79 3 0.03
80 56 0.56
81 40 0.40
82 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.31
Consensus pattern (79 bp):
AAAATTACCAAATACCCTGATTTGCAAAATTATCGAAATACCTCTGATTTGTAAAATTACCAAAA
TACCCCCAACTTGT
Found at i:83890738 original size:27 final size:26
Alignment explanation
Indices: 83890544--83890739 Score: 124
Period size: 27 Copynumber: 7.3 Consensus size: 26
83890534 CCTTGGTTTA
** *
83890544 CAAAATTACCAAAATACCCTTGGTTTG
1 CAAAATTACC-AAATACCCCCGATTTG
* * * *
83890571 TAAAATTATCGAAATACCTCTGATTTG
1 CAAAATTA-CCAAATACCCCCGATTTG
*
83890598 TAAAATTACCGAAATACCCCCGATTTG
1 CAAAATTACC-AAATACCCCCGATTTG
* * *
83890625 TAAAATTACCGAAATACCTCTGATTTG
1 CAAAATTACC-AAATACCCCCGATTTG
* *
83890652 CAAAATTACTGAAATA-CCCTGATTTG
1 CAAAATTAC-CAAATACCCCCGATTTG
* * ** * *
83890678 TAAAATTACTAAAATACCTTCAACTTG
1 CAAAATTAC-CAAATACCCCCGATTTG
* * *
83890705 TACAATTACCAAAGTACCCCCGATTTA
1 CAAAATTACCAAA-TACCCCCGATTTG
83890732 CAAAATTA
1 CAAAATTA
83890740 TCGTTTTACC
Statistics
Matches: 135, Mismatches: 29, Indels: 10
0.78 0.17 0.06
Matches are distributed among these distances:
26 27 0.20
27 107 0.79
28 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (26 bp):
CAAAATTACCAAATACCCCCGATTTG
Found at i:83890777 original size:27 final size:27
Alignment explanation
Indices: 83890720--83890778 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 27
83890710 TTACCAAAGT
* * ****
83890720 ACCCCCGATTTACAAAATTATCGTTTT
1 ACCCTCGATTTACAAAATTACCGACAC
83890747 ACCCTCGATTTACAAAATTACCGACAC
1 ACCCTCGATTTACAAAATTACCGACAC
83890774 ACCCT
1 ACCCT
83890779 TATAGGGTAG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.32, C:0.32, G:0.07, T:0.29
Consensus pattern (27 bp):
ACCCTCGATTTACAAAATTACCGACAC
Found at i:83890778 original size:107 final size:107
Alignment explanation
Indices: 83890529--83890770 Score: 267
Period size: 107 Copynumber: 2.3 Consensus size: 107
83890519 CCCTATTTAG
* * * * * *
83890529 AATACCCTTGGTTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATTATCGAAATACCTCTGA
1 AATACCCTCGATTTACAAAATTACCGAAATACCC-TGATTTGTAAAATTATCAAAATACCTCTAA
* **
83890594 TTTGTAAAATTACCGAAATACCCCCGATTTGTAAAATTACCGA
65 CTTGTAAAATTACCGAAATACCCCCGATTTACAAAATTACCGA
* *
83890637 AATA-CCTCTGATTTGCAAAATTACTGAAATACCCTGATTTGTAAAATTA-CTAAAATACCT-TC
1 AATACCCTC-GATTTACAAAATTACCGAAATACCCTGATTTGTAAAATTATC-AAAATACCTCT-
* * *
83890699 AACTTGTACAATTACC-AAAGTACCCCCGATTTACAAAATTATCGT
63 AACTTGTAAAATTACCGAAA-TACCCCCGATTTACAAAATTACCGA
**
83890744 TTTACCCTCGATTTACAAAATTACCGA
1 AATACCCTCGATTTACAAAATTACCGA
83890771 CACACCCTTA
Statistics
Matches: 111, Mismatches: 18, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
106 5 0.05
107 77 0.69
108 29 0.26
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.32
Consensus pattern (107 bp):
AATACCCTCGATTTACAAAATTACCGAAATACCCTGATTTGTAAAATTATCAAAATACCTCTAAC
TTGTAAAATTACCGAAATACCCCCGATTTACAAAATTACCGA
Found at i:83890820 original size:54 final size:53
Alignment explanation
Indices: 83890762--83890940 Score: 234
Period size: 54 Copynumber: 3.3 Consensus size: 53
83890752 CGATTTACAA
* * *
83890762 AATTACCGACACACCCTTATAGGGTAGACTTACTGAAATACCCTTGTAAGGTAG
1 AATTACCGAAATACCCTTATAGGGTAGAATTACTGAAATACCC-TGTAAGGTAG
*
83890816 AATTACCGAAATACCCCTATAGGGTAGAATTACTGAAATAACCCTGT-AGGATAG
1 AATTACCGAAATACCCTTATAGGGTAGAATTACTGAAAT-ACCCTGTAAGG-TAG
* * * *
83890870 AATTATCGAAATACCCTTGTAGGGTAGAAATACTGAAATATCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTATAGGGTAGAATTACTGAAATA-CCCTGTAAGGTAG
*
83890924 AATTACCGAGATACCCT
1 AATTACCGAAATACCCT
83890941 CGTGGGGTAA
Statistics
Matches: 110, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
53 4 0.04
54 100 0.91
55 6 0.05
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.26
Consensus pattern (53 bp):
AATTACCGAAATACCCTTATAGGGTAGAATTACTGAAATACCCTGTAAGGTAG
Found at i:83890948 original size:27 final size:26
Alignment explanation
Indices: 83890762--83890957 Score: 194
Period size: 27 Copynumber: 7.3 Consensus size: 26
83890752 CGATTTACAA
* * *
83890762 AATTACCGACACACCCTTATAGGGTAG
1 AATTACCGAAATACCC-TGTAGGGTAG
* * *
83890789 ACTTACTGAAATACCCTTGTAAGGTAG
1 AATTACCGAAATACCC-TGTAGGGTAG
*
83890816 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATA-CCCTGTAGGGTAG
* *
83890843 AATTACTGAAATAACCCTGTAGGATAG
1 AATTACCGAAAT-ACCCTGTAGGGTAG
*
83890870 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCC-TGTAGGGTAG
* *
83890897 AAATACTGAAATATCCCTGTAGGGTAG
1 AATTACCGAAATA-CCCTGTAGGGTAG
* * *
83890924 AATTACCGAGATACCCTCGTGGGGTAA
1 AATTACCGAAATACCCT-GTAGGGTAG
83890951 AATTACC
1 AATTACC
83890958 ATTTTGCCCC
Statistics
Matches: 140, Mismatches: 24, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
26 8 0.06
27 125 0.89
28 7 0.05
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (26 bp):
AATTACCGAAATACCCTGTAGGGTAG
Found at i:83890955 original size:81 final size:81
Alignment explanation
Indices: 83890796--83890955 Score: 214
Period size: 81 Copynumber: 2.0 Consensus size: 81
83890786 TAGACTTACT
* *
83890796 GAAATACCCTTGTAAGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACTGAAATAACCCT
1 GAAATACCCTTGTAAGGTAGAAATACCGAAATACCCCTATAGGGTAGAATTACCGAAATAACCCT
*
83890861 GTAGGATAGAATTATC
66 GTAGGATAAAATTATC
* * * * *
83890877 GAAATACCCTTGTAGGGTAGAAATACTGAAATATCCCTGTAGGGTAGAATTACCGAGAT-ACCCT
1 GAAATACCCTTGTAAGGTAGAAATACCGAAATACCCCTATAGGGTAGAATTACCGAAATAACCCT
* *
83890941 CGTGGGGTAAAATTA
66 -GTAGGATAAAATTA
83890956 CCATTTTGCC
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
80 5 0.07
81 63 0.93
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (81 bp):
GAAATACCCTTGTAAGGTAGAAATACCGAAATACCCCTATAGGGTAGAATTACCGAAATAACCCT
GTAGGATAAAATTATC
Found at i:83891137 original size:19 final size:19
Alignment explanation
Indices: 83891113--83891155 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
83891103 TCATCAACCA
83891113 GGTGTAAGGATGGTACGAG
1 GGTGTAAGGATGGTACGAG
83891132 GGTGTAAGGATGGTACGAG
1 GGTGTAAGGATGGTACGAG
83891151 GGTGT
1 GGTGT
83891156 TATGGATGGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.23, C:0.05, G:0.49, T:0.23
Consensus pattern (19 bp):
GGTGTAAGGATGGTACGAG
Found at i:83900490 original size:40 final size:40
Alignment explanation
Indices: 83900442--83900625 Score: 287
Period size: 40 Copynumber: 4.6 Consensus size: 40
83900432 GCAAACACCT
* *
83900442 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGACATATCAACTCGCATAA
* *
83900482 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGACATATCAACTCGCATAA
* *
83900522 TTGCCTTCGGGTCATAGCCCGGACATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGACATATCAACTCGCATAA
* *
83900562 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGACATATCAACTCGCATAA
*
83900602 TTGCCTTCGGGTCATAGCCCGGAC
1 TTGCCTTCGGGTCTTAGCCCGGAC
83900626 TCGTTCGGGT
Statistics
Matches: 130, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 130 1.00
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGACATATCAACTCGCATAA
Found at i:83900575 original size:80 final size:80
Alignment explanation
Indices: 83900442--83900625 Score: 332
Period size: 80 Copynumber: 2.3 Consensus size: 80
83900432 GCAAACACCT
* * *
83900442 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTCATAGCCCGGACATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
83900507 TATCATCTCGCATAA
66 TATCATCTCGCATAA
*
83900522 TTGCCTTCGGGTCATAGCCCGGACATATTAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTCATAGCCCGGACATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
83900587 TATCATCTCGCATAA
66 TATCATCTCGCATAA
83900602 TTGCCTTCGGGTCATAGCCCGGAC
1 TTGCCTTCGGGTCATAGCCCGGAC
83900626 TCGTTCGGGT
Statistics
Matches: 100, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
80 100 1.00
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.30
Consensus pattern (80 bp):
TTGCCTTCGGGTCATAGCCCGGACATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
TATCATCTCGCATAA
Found at i:83900780 original size:40 final size:40
Alignment explanation
Indices: 83900732--83900839 Score: 189
Period size: 40 Copynumber: 2.7 Consensus size: 40
83900722 GCAAACACCT
* * *
83900732 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
83900772 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
83900812 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
83900840 TCCAATGCTC
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 65 1.00
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:83909459 original size:40 final size:40
Alignment explanation
Indices: 83909414--83909634 Score: 379
Period size: 40 Copynumber: 5.5 Consensus size: 40
83909404 AACACCTTTA
* * *
83909414 CCTTCGGGTCTTAACCCGGACATATCAACTTGCATAATTG
1 CCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTG
*
83909454 CCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAATTG
1 CCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTG
* * *
83909494 CCTTCGGGTCATAGCCCGGACATATTAACTCGCATAATTG
1 CCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTG
83909534 CCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTG
1 CCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTG
83909574 CCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTG
1 CCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTG
83909614 CCTTCGGGTCTTAGCCCGGAT
1 CCTTCGGGTCTTAGCCCGGAT
83909635 CGGGTCTTAG
Statistics
Matches: 170, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 170 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (40 bp):
CCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTG
Found at i:83909639 original size:17 final size:17
Alignment explanation
Indices: 83909617--83909651 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
83909607 ATAATTGCCT
83909617 TCGGGTCTTAGCCCGGA
1 TCGGGTCTTAGCCCGGA
83909634 TCGGGTCTTAGCCCGGA
1 TCGGGTCTTAGCCCGGA
83909651 T
1 T
83909652 ATATTTCGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.11, C:0.29, G:0.34, T:0.26
Consensus pattern (17 bp):
TCGGGTCTTAGCCCGGA
Found at i:83909660 original size:120 final size:118
Alignment explanation
Indices: 83909415--83909678 Score: 370
Period size: 120 Copynumber: 2.2 Consensus size: 118
83909405 ACACCTTTAC
* * *
83909415 CTTCGGGTCTTAACCCGGACATATCAACTTGCATAATTGCCTTCGGGTCTTAGCCCGGATATATC
1 CTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATATATC
* *
83909480 ATCTCGCATAATTGCCTTCGGGTCATAGCCCGGACATATTAACTCGCATAATT
66 AACTCGCATAATTGCCTTCGGGTCATAGCCCGGACATATTAACCCGCATAATT
83909533 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATATA
1 --CTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATATA
* * * * *
83909598 TCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATCGGGTCTTAGCCCGGAT-ATAT
64 TCAACTCGCATAATTGCCTTCGGGTCATAGCCCGGA-C--ATATTAACCCGCATAAT-T
83909656 -TTCGGGTCTTAGCCCGGATATAT
1 CTTCGGGTCTTAGCCCGGATATAT
83909679 TCCAATGCTC
Statistics
Matches: 130, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
120 117 0.90
121 1 0.01
122 2 0.02
123 10 0.08
ACGTcount: A:0.21, C:0.27, G:0.22, T:0.30
Consensus pattern (118 bp):
CTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATATATC
AACTCGCATAATTGCCTTCGGGTCATAGCCCGGACATATTAACCCGCATAATT
Found at i:83909664 original size:23 final size:23
Alignment explanation
Indices: 83909634--83909679 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
83909624 TTAGCCCGGA
83909634 TCGGGTCTTAGCCCGGATATATT
1 TCGGGTCTTAGCCCGGATATATT
83909657 TCGGGTCTTAGCCCGGATATATT
1 TCGGGTCTTAGCCCGGATATATT
83909680 CCAATGCTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.17, C:0.22, G:0.26, T:0.35
Consensus pattern (23 bp):
TCGGGTCTTAGCCCGGATATATT
Found at i:83913302 original size:46 final size:46
Alignment explanation
Indices: 83913235--83913327 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
83913225 TATTTGCCTG
83913235 GAAAAAAGTAAAGGTTTTGGCGATTAGATTTAGTGTCTGATTTCAC
1 GAAAAAAGTAAAGGTTTTGGCGATTAGATTTAGTGTCTGATTTCAC
83913281 GAAAAAAGTAAAGGTTTTGGCGATTAGATTTAGTGTCTGATTTCAC
1 GAAAAAAGTAAAGGTTTTGGCGATTAGATTTAGTGTCTGATTTCAC
83913327 G
1 G
83913328 GCTTTCTAGC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.32, C:0.09, G:0.25, T:0.34
Consensus pattern (46 bp):
GAAAAAAGTAAAGGTTTTGGCGATTAGATTTAGTGTCTGATTTCAC
Found at i:83927661 original size:24 final size:26
Alignment explanation
Indices: 83927634--83927686 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
83927624 TCATTTTTCC
*
83927634 GCTCTTTC-AAGCT-ATGAACAGTAA
1 GCTCTTCCTAAGCTGATGAACAGTAA
* *
83927658 GCTCTTCCTTAGCTGATGAATAGTAA
1 GCTCTTCCTAAGCTGATGAACAGTAA
83927684 GCT
1 GCT
83927687 ATATTGAGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 7 0.29
25 4 0.17
26 13 0.54
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCTCTTCCTAAGCTGATGAACAGTAA
Found at i:83927757 original size:23 final size:23
Alignment explanation
Indices: 83927650--83927790 Score: 106
Period size: 24 Copynumber: 5.9 Consensus size: 23
83927640 TCAAGCTATG
* *
83927650 AACAGTAAGCTCTTCCTTAGCTGA
1 AACAGTAAGCTCTT-ATGAGCTGA
* * *
83927674 TGAATAGTAAGCT-ATATTGAGCTAA
1 --AACAGTAAGCTCTTA-TGAGCTGA
* *
83927699 AATAGTAAGCTCTAATGAGCTGA
1 AACAGTAAGCTCTTATGAGCTGA
*
83927722 GAACAGTAAGCTCTTATGAGTTGA
1 -AACAGTAAGCTCTTATGAGCTGA
* *
83927746 AACGGTAAGCTC-CATCGAGCTGAA
1 AACAGTAAGCTCTTAT-GAGCTG-A
*
83927770 AACAGTAAGCTCTTAAGAGCT
1 AACAGTAAGCTCTTATGAGCT
83927791 AATATATCGG
Statistics
Matches: 92, Mismatches: 17, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
22 2 0.02
23 34 0.37
24 38 0.41
25 8 0.09
26 10 0.11
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.26
Consensus pattern (23 bp):
AACAGTAAGCTCTTATGAGCTGA
Found at i:83931790 original size:26 final size:27
Alignment explanation
Indices: 83931761--83931814 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
83931751 TCACACAAGT
*
83931761 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
83931787 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
83931814 T
1 T
83931815 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:83931960 original size:27 final size:27
Alignment explanation
Indices: 83931815--83931960 Score: 148
Period size: 27 Copynumber: 5.4 Consensus size: 27
83931805 GGGGCAAAAT
* * *
83931815 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** *
83931842 GAAAATTCTACCCTACAAGAGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
83931869 GGTAATTCTACCTTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
83931896 GGTAATTCTACCCTACAGGGGTTTTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
83931923 GATAATACTACCTTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
83931950 AGCAATTCTAC
1 GGTAATTCTAC
83931961 AACTTATCCA
Statistics
Matches: 94, Mismatches: 25, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 94 1.00
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:83937373 original size:27 final size:26
Alignment explanation
Indices: 83937325--83937384 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
83937315 GCGAGGCTGG
*
83937325 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
83937352 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
83937378 CAGATAT
1 CAGATAT
83937385 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:83937469 original size:27 final size:26
Alignment explanation
Indices: 83937423--83937474 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
83937413 GCGAGGCTGC
83937423 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGTCACCAGAA
* *
83937449 CAGATATATGTGGCGAGGTCACCAGA
1 CAGATAT-TGTGACGAAGTCACCAGA
83937475 TTGTAGTGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.35, C:0.19, G:0.27, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGACGAAGTCACCAGAA
Found at i:83938148 original size:27 final size:27
Alignment explanation
Indices: 83938118--83938263 Score: 184
Period size: 27 Copynumber: 5.4 Consensus size: 27
83938108 GGGGCAAAAT
* * *
83938118 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
83938145 GGTAATTGTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
83938172 GGTAATTCTACCTTACAATGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
83938199 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
83938226 AGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
83938253 GGTAATTCTAC
1 GGTAATTCTAC
83938264 AACTTATCCA
Statistics
Matches: 100, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 100 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:83942031 original size:27 final size:27
Alignment explanation
Indices: 83942000--83942129 Score: 100
Period size: 27 Copynumber: 4.9 Consensus size: 27
83941990 CATATCGTAA
83942000 GGTAACTCAGTCATTTTACCTTACGGG
1 GGTAACTCAGTCATTTTACCTTACGGG
** * **
83942027 GGTAAAACAGTCATTTTAACTTACAAG
1 GGTAACTCAGTCATTTTACCTTACGGG
* * * *
83942054 GGTAACACAATCATTTTACCCTA-TGG
1 GGTAACTCAGTCATTTTACCTTACGGG
** * * *
83942080 GGTATTTCGGTCATTTTACCCTATGGG
1 GGTAACTCAGTCATTTTACCTTACGGG
** *
83942107 GGTATTTCGGTCATTTTACCTTA
1 GGTAACTCAGTCATTTTACCTTA
83942130 TGAGGGTATT
Statistics
Matches: 84, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
26 19 0.23
27 65 0.77
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAACTCAGTCATTTTACCTTACGGG
Found at i:83942131 original size:27 final size:27
Alignment explanation
Indices: 83942064--83942146 Score: 141
Period size: 27 Copynumber: 3.1 Consensus size: 27
83942054 GGTAACACAA
83942064 TCATTTTACCCTAT-GGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGG
83942090 TCATTTTACCCTATGGGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGG
* *
83942117 TCATTTTACCTTATGAGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGG
83942144 TCA
1 TCA
83942147 CCATTTCGAC
Statistics
Matches: 54, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
26 14 0.26
27 40 0.74
ACGTcount: A:0.17, C:0.18, G:0.23, T:0.42
Consensus pattern (27 bp):
TCATTTTACCCTATGGGGGTATTTCGG
Found at i:83946082 original size:13 final size:13
Alignment explanation
Indices: 83946064--83946089 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
83946054 ATGGTAAAAA
83946064 GAAATGCTTAAGT
1 GAAATGCTTAAGT
83946077 GAAATGCTTAAGT
1 GAAATGCTTAAGT
83946090 TAGGTCATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (13 bp):
GAAATGCTTAAGT
Found at i:83946624 original size:29 final size:29
Alignment explanation
Indices: 83946586--83946796 Score: 284
Period size: 29 Copynumber: 7.2 Consensus size: 29
83946576 GTATCGACGC
* *
83946586 CCATCGAATATGAAAAGGTATGGTTTCGA
1 CCATCGAATATGAAAAGGGATGGCTTCGA
*
83946615 CCATCAAATATGAAAAGGGATGGCTTCGA
1 CCATCGAATATGAAAAGGGATGGCTTCGA
83946644 CCATCGAATATGAAAAGGGATGGCTTCGA
1 CCATCGAATATGAAAAGGGATGGCTTCGA
* *
83946673 CCATC-AATTAAAGAAAATGGATGG-TTACGA
1 CCATCGAA-T-ATGAAAAGGGATGGCTT-CGA
* *
83946703 CCATCGAATATGAAAAGGGATAG-TGACGA
1 CCATCGAATATGAAAAGGGATGGCT-TCGA
*
83946732 CCATCGAATATGAAAAGGGATGGCTTCAA
1 CCATCGAATATGAAAAGGGATGGCTTCGA
*
83946761 CCATCGAATACGAAAAGGGATGGCTTCGA
1 CCATCGAATATGAAAAGGGATGGCTTCGA
83946790 CCATCGA
1 CCATCGA
83946797 TTAAAGAAAA
Statistics
Matches: 161, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
28 2 0.01
29 135 0.84
30 22 0.14
31 2 0.01
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (29 bp):
CCATCGAATATGAAAAGGGATGGCTTCGA
Found at i:83946746 original size:88 final size:85
Alignment explanation
Indices: 83946586--83946796 Score: 273
Period size: 88 Copynumber: 2.4 Consensus size: 85
83946576 GTATCGACGC
* * * *
83946586 CCATCGAATATGAAAAGGTATGGTTTCGACCATCAAATATGAAAAGGGATGGCTTCGACCATCGA
1 CCATCGAATAAGAAAAGG-ATGG-TTCGACCATCGAATATGAAAAGGGATAGCTACGACCATCGA
*
83946651 ATATGAAAAGGGATGGCTTCGA
64 ATATGAAAAGGGATGGCTTCAA
83946673 CCATC-AATTAAAGAAAATGGATGGTTACGACCATCGAATATGAAAAGGGATAG-TGACGACCAT
1 CCATCGAA-T-AAGAAAA-GGATGGTT-CGACCATCGAATATGAAAAGGGATAGCT-ACGACCAT
83946736 CGAATATGAAAAGGGATGGCTTCAA
61 CGAATATGAAAAGGGATGGCTTCAA
*
83946761 CCATCGAATACGAAAAGGGATGGCTTCGACCATCGA
1 CCATCGAATAAGAAAA-GGATGG-TTCGACCATCGA
83946797 TTAAAGAAAA
Statistics
Matches: 110, Mismatches: 7, Indels: 14
0.84 0.05 0.11
Matches are distributed among these distances:
86 2 0.02
87 31 0.28
88 73 0.66
89 4 0.04
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (85 bp):
CCATCGAATAAGAAAAGGATGGTTCGACCATCGAATATGAAAAGGGATAGCTACGACCATCGAAT
ATGAAAAGGGATGGCTTCAA
Found at i:83946792 original size:117 final size:117
Alignment explanation
Indices: 83946586--83946815 Score: 370
Period size: 117 Copynumber: 2.0 Consensus size: 117
83946576 GTATCGACGC
* * ** *
83946586 CCATCGAATATGAAAAGGTATGGTTTCGACCATCAAATATGAAAAGGGATGGCTTCGACCATCGA
1 CCATCGAATATGAAAAGGGATAGTGACGACCATCAAATATGAAAAGGGATGGCTTCAACCATCGA
* *
83946651 ATATGAAAAGGGATGGCTTCGACCATCAATTAAAGAAAATGGATGGTTACGA
66 ATACGAAAAGGGATGGCTTCGACCATCAATTAAAGAAAAGGGATGGTTACGA
*
83946703 CCATCGAATATGAAAAGGGATAGTGACGACCATCGAATATGAAAAGGGATGGCTTCAACCATCGA
1 CCATCGAATATGAAAAGGGATAGTGACGACCATCAAATATGAAAAGGGATGGCTTCAACCATCGA
* *
83946768 ATACGAAAAGGGATGGCTTCGACCATCGATTAAAGAAAAGGGGTGGTT
66 ATACGAAAAGGGATGGCTTCGACCATCAATTAAAGAAAAGGGATGGTT
83946816 TCAACCTTTA
Statistics
Matches: 103, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
117 103 1.00
ACGTcount: A:0.37, C:0.16, G:0.26, T:0.21
Consensus pattern (117 bp):
CCATCGAATATGAAAAGGGATAGTGACGACCATCAAATATGAAAAGGGATGGCTTCAACCATCGA
ATACGAAAAGGGATGGCTTCGACCATCAATTAAAGAAAAGGGATGGTTACGA
Found at i:83952005 original size:27 final size:27
Alignment explanation
Indices: 83951975--83952031 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
83951965 GATTTGATTC
83951975 ATTCTACTCTTCAATCTCTTGAATTTT
1 ATTCTACTCTTCAATCTCTTGAATTTT
83952002 ATTCTACTCTTCAATCTCTTGAATTTT
1 ATTCTACTCTTCAATCTCTTGAATTTT
83952029 ATT
1 ATT
83952032 TCTTTTATGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.23, C:0.21, G:0.04, T:0.53
Consensus pattern (27 bp):
ATTCTACTCTTCAATCTCTTGAATTTT
Found at i:83954711 original size:40 final size:40
Alignment explanation
Indices: 83954646--83954727 Score: 137
Period size: 40 Copynumber: 2.0 Consensus size: 40
83954636 AATCCCAGTA
*
83954646 AGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCG
1 AGTTAATATATCCGGGCTAAGACCCGAAGGCAATTATGCG
* *
83954686 AGTTAATATGTCCGGGCTATGACCCGAAGGCAATTATGCG
1 AGTTAATATATCCGGGCTAAGACCCGAAGGCAATTATGCG
83954726 AG
1 AG
83954728 ACGATTTAGC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (40 bp):
AGTTAATATATCCGGGCTAAGACCCGAAGGCAATTATGCG
Found at i:83955344 original size:31 final size:31
Alignment explanation
Indices: 83955297--83955365 Score: 122
Period size: 31 Copynumber: 2.3 Consensus size: 31
83955287 GATATGATAT
83955297 TTATTA-TCATGAAATATTGTGCTTTGTGAA
1 TTATTATTCATGAAATATTGTGCTTTGTGAA
*
83955327 TTATTATTCATGTAATATTGTGCTTTGTGAA
1 TTATTATTCATGAAATATTGTGCTTTGTGAA
83955358 TTATTATT
1 TTATTATT
83955366 TGGTAATATG
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
30 6 0.16
31 31 0.84
ACGTcount: A:0.28, C:0.06, G:0.14, T:0.52
Consensus pattern (31 bp):
TTATTATTCATGAAATATTGTGCTTTGTGAA
Found at i:83967008 original size:40 final size:40
Alignment explanation
Indices: 83966804--83967008 Score: 245
Period size: 40 Copynumber: 5.1 Consensus size: 40
83966794 CGGAATTTAA
** *
83966804 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
83966844 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
83966884 CCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
83966924 CCAGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
83966964 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
83967004 CCGGA
1 CCGGA
83967009 CATCATTCAA
Statistics
Matches: 145, Mismatches: 16, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 4 0.03
40 130 0.90
41 11 0.08
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:83971704 original size:58 final size:58
Alignment explanation
Indices: 83971625--83971741 Score: 225
Period size: 58 Copynumber: 2.0 Consensus size: 58
83971615 ATACTCCTCA
*
83971625 TTCCTGCTGTGAATCTTATCAAAATAAGGTTTTAGGCGGGTATTGTTTACCTTAAAAG
1 TTCCTGCTGTGAATCTCATCAAAATAAGGTTTTAGGCGGGTATTGTTTACCTTAAAAG
83971683 TTCCTGCTGTGAATCTCATCAAAATAAGGTTTTAGGCGGGTATTGTTTACCTTAAAAG
1 TTCCTGCTGTGAATCTCATCAAAATAAGGTTTTAGGCGGGTATTGTTTACCTTAAAAG
83971741 T
1 T
83971742 GCCAAACTTG
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.27, C:0.15, G:0.21, T:0.38
Consensus pattern (58 bp):
TTCCTGCTGTGAATCTCATCAAAATAAGGTTTTAGGCGGGTATTGTTTACCTTAAAAG
Found at i:83978145 original size:68 final size:68
Alignment explanation
Indices: 83978065--83978200 Score: 263
Period size: 68 Copynumber: 2.0 Consensus size: 68
83978055 AATGGGAATG
83978065 CCGAAGTAAAAAAAAAAAAGAACAAGCAAATTGGGCTAAACTGGAACAAAAAGCAAGAAAATGGG
1 CCGAAGTAAAAAAAAAAAAGAACAAGCAAATTGGGCTAAACTGGAACAAAAAGCAAGAAAATGGG
83978130 CCA
66 CCA
*
83978133 CCGAAGTTAAAAAAAAAAAGAACAAGCAAATTGGGCTAAACTGGAACAAAAAGCAAGAAAATGGG
1 CCGAAGTAAAAAAAAAAAAGAACAAGCAAATTGGGCTAAACTGGAACAAAAAGCAAGAAAATGGG
83978198 CCA
66 CCA
83978201 AATTAAAAAG
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 67 1.00
ACGTcount: A:0.55, C:0.15, G:0.21, T:0.10
Consensus pattern (68 bp):
CCGAAGTAAAAAAAAAAAAGAACAAGCAAATTGGGCTAAACTGGAACAAAAAGCAAGAAAATGGG
CCA
Found at i:83979964 original size:33 final size:33
Alignment explanation
Indices: 83979917--83979985 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
83979907 TATCGAGTAT
83979917 TCTACCGAAAAATGCCTCACCATCATACTCAAA
1 TCTACCGAAAAATGCCTCACCATCATACTCAAA
*
83979950 TCTAGCGAAAAATGCCTCACCATCATACTCAAA
1 TCTACCGAAAAATGCCTCACCATCATACTCAAA
83979983 TCT
1 TCT
83979986 TGCACACGGC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.38, C:0.32, G:0.07, T:0.23
Consensus pattern (33 bp):
TCTACCGAAAAATGCCTCACCATCATACTCAAA
Found at i:83982238 original size:23 final size:24
Alignment explanation
Indices: 83982187--83982245 Score: 84
Period size: 24 Copynumber: 2.5 Consensus size: 24
83982177 TTTGATTCGG
83982187 GAAAGAAAAAATAATTTTACCAAT
1 GAAAGAAAAAATAATTTTACCAAT
* *
83982211 GAAAGCAAAAATAATTTTAGCAAT
1 GAAAGAAAAAATAATTTTACCAAT
*
83982235 -AAAGAGAAAAT
1 GAAAGAAAAAAT
83982246 TTGATAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
23 9 0.29
24 22 0.71
ACGTcount: A:0.59, C:0.07, G:0.12, T:0.22
Consensus pattern (24 bp):
GAAAGAAAAAATAATTTTACCAAT
Found at i:83985625 original size:62 final size:62
Alignment explanation
Indices: 83985528--83985651 Score: 248
Period size: 62 Copynumber: 2.0 Consensus size: 62
83985518 ACTTAGGATC
83985528 TCTAAGAAGTGTACTAACTATTTAACTATTAAGCCTATTCAATTTCTTGATTATTTTTTACA
1 TCTAAGAAGTGTACTAACTATTTAACTATTAAGCCTATTCAATTTCTTGATTATTTTTTACA
83985590 TCTAAGAAGTGTACTAACTATTTAACTATTAAGCCTATTCAATTTCTTGATTATTTTTTACA
1 TCTAAGAAGTGTACTAACTATTTAACTATTAAGCCTATTCAATTTCTTGATTATTTTTTACA
83985652 ATTAACCCCC
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.32, C:0.15, G:0.08, T:0.45
Consensus pattern (62 bp):
TCTAAGAAGTGTACTAACTATTTAACTATTAAGCCTATTCAATTTCTTGATTATTTTTTACA
Found at i:83989915 original size:41 final size:41
Alignment explanation
Indices: 83989857--83990037 Score: 195
Period size: 40 Copynumber: 4.4 Consensus size: 41
83989847 TCACGAACAA
* * * *
83989857 TAAGTGCCAATACATAGCTGAAGCTCTTTTAATCTCGCACAC
1 TAAGTGCC-ATACATAGCCGAAGCTATTTCAATATCGCACAC
* * * * * *
83989899 TAAGTGCCTTACATAGCTGATGCTATCTCGATTTCGCACAC
1 TAAGTGCCATACATAGCCGAAGCTATTTCAATATCGCACAC
* * *
83989940 TGAGTGCCATATATAGCCGAAGCTATTCCAA-ATCGCACAC
1 TAAGTGCCATACATAGCCGAAGCTATTTCAATATCGCACAC
* * *
83989980 TAAGTGCCATACATAGCCGAAGCTATCTCGA-ATCGCACTC
1 TAAGTGCCATACATAGCCGAAGCTATTTCAATATCGCACAC
83990020 TAAGTGCCATACATAGCC
1 TAAGTGCCATACATAGCC
83990038 AAATTGTCGT
Statistics
Matches: 117, Mismatches: 22, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
40 60 0.51
41 49 0.42
42 8 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (41 bp):
TAAGTGCCATACATAGCCGAAGCTATTTCAATATCGCACAC
Found at i:84001698 original size:34 final size:34
Alignment explanation
Indices: 84001655--84001722 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
84001645 CCATACTGCT
*
84001655 ATCATCGTAAATCGACAAAAGCCAGAAAATAGGA
1 ATCATCGTAAATCGACAAAAGCCAAAAAATAGGA
* **
84001689 ATCATCGTAAATTGGTAAAAGCCAAAAAATAGGA
1 ATCATCGTAAATCGACAAAAGCCAAAAAATAGGA
84001723 TTATTGAAGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (34 bp):
ATCATCGTAAATCGACAAAAGCCAAAAAATAGGA
Found at i:84016940 original size:46 final size:47
Alignment explanation
Indices: 84016854--84017022 Score: 151
Period size: 46 Copynumber: 3.7 Consensus size: 47
84016844 AACGAGAGCT
* * *
84016854 AGTGTAAGA-CATATCTGGGACAT-GCATCAGCCTCCAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GGCTACAGATGTAAGCC
* *
84016900 AGTGTAAGA-CATGTCTTGGACAT-GCATCGGCTACATGATGT--G-T
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACA-GATGTAAGCC
* * *
84016943 AGCGTAAGACCATGTCTGGGACATGGGATCGACTTA-ACG-TG-AGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-TACA-GATGTA-AGCC
84016990 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
84017023 ATTATACCCT
Statistics
Matches: 101, Mismatches: 14, Indels: 15
0.78 0.11 0.12
Matches are distributed among these distances:
43 8 0.08
44 16 0.16
45 13 0.13
46 34 0.34
47 30 0.30
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACAGATGTAAGCC
Found at i:84017791 original size:29 final size:28
Alignment explanation
Indices: 84017741--84017803 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 28
84017731 AGCCCTATGT
*
84017741 TGTCCACACGGGTAGACACATAGGCGTG
1 TGTCCACACGGCTAGACACATAGGCGTG
* *
84017769 TGTCACACACGGCTAGTCCCATAGGCGTG
1 TGTC-CACACGGCTAGACACATAGGCGTG
84017798 TTGTCC
1 -TGTCC
84017804 GGCCGTGTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
28 4 0.13
29 22 0.73
30 4 0.13
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.22
Consensus pattern (28 bp):
TGTCCACACGGCTAGACACATAGGCGTG
Found at i:84020429 original size:4 final size:4
Alignment explanation
Indices: 84020416--84020450 Score: 63
Period size: 4 Copynumber: 9.0 Consensus size: 4
84020406 TGGGTTTTTG
84020416 AATT -ATT AATT AATT AATT AATT AATT AATT AATT
1 AATT AATT AATT AATT AATT AATT AATT AATT AATT
84020451 GAAGTTCAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 3 0.10
4 27 0.90
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (4 bp):
AATT
Found at i:84030480 original size:39 final size:39
Alignment explanation
Indices: 84030426--84030504 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
84030416 ATAACCTTTA
84030426 AGAAACCAGGTTATACTTTTTCAATCCCTTGATCCCTCT
1 AGAAACCAGGTTATACTTTTTCAATCCCTTGATCCCTCT
84030465 AGAAACCAGGTTATACTTTTTCAATCCCTTGATCCCTCT
1 AGAAACCAGGTTATACTTTTTCAATCCCTTGATCCCTCT
84030504 A
1 A
84030505 CAAAAGTTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.27, C:0.28, G:0.10, T:0.35
Consensus pattern (39 bp):
AGAAACCAGGTTATACTTTTTCAATCCCTTGATCCCTCT
Found at i:84031754 original size:17 final size:15
Alignment explanation
Indices: 84031734--84031793 Score: 50
Period size: 15 Copynumber: 3.9 Consensus size: 15
84031724 AAAAATTTTA
84031734 AAATATATTAAATAAT
1 AAATATATTAAA-AAT
* *
84031750 CAAATACATTTAAAAT
1 -AAATATATTAAAAAT
* *
84031766 AAATAT-TAAAACAAA
1 AAATATATTAAA-AAT
84031781 AAATATATTAAAA
1 AAATATATTAAAA
84031794 TATATTAAAA
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
14 3 0.09
15 14 0.41
16 7 0.21
17 10 0.29
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (15 bp):
AAATATATTAAAAAT
Found at i:84031795 original size:10 final size:10
Alignment explanation
Indices: 84031731--84031805 Score: 54
Period size: 10 Copynumber: 7.8 Consensus size: 10
84031721 AATAAAAATT
84031731 TTAAAATATA
1 TTAAAATATA
84031741 TT-AAATA-A
1 TTAAAATATA
* *
84031749 -TCAAATACA
1 TTAAAATATA
84031758 TTTAAAATAAATA
1 -TTAAAAT--ATA
*
84031771 TTAAAACA-A
1 TTAAAATATA
84031780 --AAAATATA
1 TTAAAATATA
84031788 TTAAAATATA
1 TTAAAATATA
84031798 TTAAAATA
1 TTAAAATA
84031806 ATTTTTAAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 18
0.70 0.05 0.24
Matches are distributed among these distances:
7 6 0.12
8 7 0.13
9 7 0.13
10 19 0.37
11 5 0.10
12 6 0.12
13 2 0.04
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (10 bp):
TTAAAATATA
Found at i:84031888 original size:29 final size:28
Alignment explanation
Indices: 84031837--84031895 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 28
84031827 TTGAAAATAT
* *
84031837 AATAAAAATGAATTATATTAAAATTAAA
1 AATAAAAATGAAATATATTAAAAATAAA
84031865 AATAAAATAT-AAATATGATTAAAAATAAA
1 AATAAAA-ATGAAATAT-ATTAAAAATAAA
84031894 AA
1 AA
84031896 ATATATATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
28 12 0.44
29 15 0.56
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (28 bp):
AATAAAAATGAAATATATTAAAAATAAA
Found at i:84031905 original size:25 final size:23
Alignment explanation
Indices: 84031859--84031903 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
84031849 TTATATTAAA
84031859 ATTAAAAATAAAATATAAATATG
1 ATTAAAAATAAAATATAAATATG
* *
84031882 ATTAAAAATAAAAAATATATAT
1 ATTAAAAATAAAATATAAATAT
84031904 ATTTAGTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (23 bp):
ATTAAAAATAAAATATAAATATG
Found at i:84033870 original size:7 final size:7
Alignment explanation
Indices: 84033841--84033916 Score: 62
Period size: 7 Copynumber: 10.9 Consensus size: 7
84033831 ATCTTTTCAA
*
84033841 CTCAATA
1 CTCAATC
*
84033848 CTCAATA
1 CTCAATC
84033855 CTCAATC
1 CTCAATC
*
84033862 CTCACTC
1 CTCAATC
84033869 CTCAATC
1 CTCAATC
* *
84033876 TTCTATC
1 CTCAATC
*
84033883 CTCAATT
1 CTCAATC
* **
84033890 TTCGCTC
1 CTCAATC
*
84033897 CTTAATC
1 CTCAATC
84033904 CTCAATC
1 CTCAATC
84033911 CTCAAT
1 CTCAAT
84033917 TCCCAGTTCT
Statistics
Matches: 52, Mismatches: 17, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
7 52 1.00
ACGTcount: A:0.26, C:0.37, G:0.01, T:0.36
Consensus pattern (7 bp):
CTCAATC
Found at i:84033886 original size:28 final size:28
Alignment explanation
Indices: 84033841--84033916 Score: 80
Period size: 28 Copynumber: 2.7 Consensus size: 28
84033831 ATCTTTTCAA
* *
84033841 CTCAATACTCAATACTCAATCCTCACTC
1 CTCAATCCTCAATCCTCAATCCTCACTC
* * ** *
84033869 CTCAATCTTCTATCCTCAATTTTCGCTC
1 CTCAATCCTCAATCCTCAATCCTCACTC
*
84033897 CTTAATCCTCAATCCTCAAT
1 CTCAATCCTCAATCCTCAAT
84033917 TCCCAGTTCT
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.26, C:0.37, G:0.01, T:0.36
Consensus pattern (28 bp):
CTCAATCCTCAATCCTCAATCCTCACTC
Found at i:84036041 original size:61 final size:61
Alignment explanation
Indices: 84035904--84036046 Score: 153
Period size: 61 Copynumber: 2.3 Consensus size: 61
84035894 GTTTTTCTAC
* * *
84035904 AAAGACATTCCTTAACATTCAATACTCGACACAAAGGCTTTCATATCCAGAGTTTTGCCCT
1 AAAGACATTCCTTAATATTCAATACTCGACACAAAGGCTTTCATATCCAGAGTTTTACCAT
* * * * * * * * *
84035965 AAAGGCGTTCTTTAATATTTAGTACTC-ACCACAAATGTTTTCCTGTCCAGAGTTTTACCAT
1 AAAGACATTCCTTAATATTCAATACTCGA-CACAAAGGCTTTCATATCCAGAGTTTTACCAT
*
84036026 AAAGACATTCCTTAATGTTCA
1 AAAGACATTCCTTAATATTCA
84036047 GTATACTCCT
Statistics
Matches: 64, Mismatches: 17, Indels: 2
0.77 0.20 0.02
Matches are distributed among these distances:
60 1 0.02
61 63 0.98
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.34
Consensus pattern (61 bp):
AAAGACATTCCTTAATATTCAATACTCGACACAAAGGCTTTCATATCCAGAGTTTTACCAT
Found at i:84047736 original size:47 final size:47
Alignment explanation
Indices: 84047681--84047774 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
84047671 TTTGATTAGG
*
84047681 TAGATTGGAGTGGTGTTTTAGATCCTTGTAGTTCTTGAGTTTTTTTT
1 TAGATTGGAGTGGTGTTTTAGATCCTTGTAGTTCTTGAGTTTATTTT
84047728 TAGATTGGAGTGGTGTTTTAGATCCTTGTAGTTCTTGAGTTTATTTT
1 TAGATTGGAGTGGTGTTTTAGATCCTTGTAGTTCTTGAGTTTATTTT
84047775 CTTATTGTTA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.16, C:0.06, G:0.26, T:0.52
Consensus pattern (47 bp):
TAGATTGGAGTGGTGTTTTAGATCCTTGTAGTTCTTGAGTTTATTTT
Found at i:84051045 original size:54 final size:53
Alignment explanation
Indices: 84050932--84051045 Score: 140
Period size: 53 Copynumber: 2.1 Consensus size: 53
84050922 TTTGTTAAAT
* ** * * *
84050932 TTTTATAGAAGAAAATGAATCATGGTTGTTAAACAAGAGAAATGTTTGAGTGG
1 TTTTATGGAAGAAAATGAATCATAATTGTTAAAAAAAAGAAATGTTTGAGTGA
*
84050985 TTTTATGGAAGAAAATGAATCATAATT-TTAAAGAAAAAGGAAATGTTTTAGTGA
1 TTTTATGGAAGAAAATGAATCATAATTGTTAAA-AAAAA-GAAATGTTTGAGTGA
84051039 TTTTATG
1 TTTTATG
84051046 AAAAATTTCC
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
52 5 0.10
53 27 0.52
54 20 0.38
ACGTcount: A:0.41, C:0.03, G:0.21, T:0.35
Consensus pattern (53 bp):
TTTTATGGAAGAAAATGAATCATAATTGTTAAAAAAAAGAAATGTTTGAGTGA
Found at i:84051842 original size:54 final size:53
Alignment explanation
Indices: 84051732--84051843 Score: 156
Period size: 53 Copynumber: 2.1 Consensus size: 53
84051722 TCTACTGAAT
* * *
84051732 TTTTATGGAAGAAAATGAATCATGATTGTTAAATATGGGAAATGTTTGAGTGG
1 TTTTACGGAAGAAAATGAATCATGATTGTTAAACAAGGGAAATGTTTGAGTGG
84051785 TTTTACGGAAGAAAATGAATCAT-AGTT-TTAAAGACAAGGGAAATGTTTGAGTGG
1 TTTTACGGAAGAAAATGAATCATGA-TTGTT-AA-ACAAGGGAAATGTTTGAGTGG
84051839 TTTTA
1 TTTTA
84051844 TGGCAAATTA
Statistics
Matches: 53, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
52 3 0.06
53 26 0.49
54 24 0.45
ACGTcount: A:0.37, C:0.04, G:0.25, T:0.35
Consensus pattern (53 bp):
TTTTACGGAAGAAAATGAATCATGATTGTTAAACAAGGGAAATGTTTGAGTGG
Found at i:84052448 original size:800 final size:800
Alignment explanation
Indices: 84050929--84053511 Score: 4470
Period size: 800 Copynumber: 3.2 Consensus size: 800
84050919 TTGTTTGTTA
* * * *
84050929 AATTTTTATAGAAGAAAATGAATCATGGTTGTTAAACAAGAGAAATGTTTGAGTGGTTTTATGGA
1 AATTTTTATGGAAGAAAATGAATCATGATTGTTAAACAAGGGAAATGTTTGAGTGGTTTTACGGA
* * * * * ** *
84050994 AGAAAATGAATCATAATTTTAAAGAAAAAGGAAATGTTTTAGTGATTTTATGAAAAATTTCCCAT
66 AGAAAATGAATCATAGTTTTAAAGACAAGGGAAATGTTTGAGTGGTTTTATGGCAAATTACCCAT
84051059 ATTTTTGGAATTTTGGAGGGAAATGATTACTTTGTAAAATAAGGGAATTGTGGAAGTGGCCTTGT
131 ATTTTTGGAATTTTGGAGGGAAATGATTACTTTGTAAAATAAGGGAATTGTGGAAGTGGCCTTGT
84051124 AACAGCCTGATTTTGGGCCTAATCGGGAAAATAGTTTCGAAACCACTAACTCGAGGTCAGTTAAA
196 AACAGCCTGATTTTGGGCCTAATCGGGAAAATAGTTTCGAAACCACTAACTCGAGGTCAGTTAAA
84051189 TTATTTTTAATATTATTTTATGTGTTGTAGCATGATTATATGAGTGCATGAAAATTTTGGTAAAA
261 TTATTTTTAATATTATTTTATGTGTTGTAGCATGATTATATGAGTGCATGAAAATTTTGGTAAAA
84051254 TAATTTTAGTGATTGCATGCTTAATTACGAAAAGGACTAAATCGCATAAAGTGCAAAAGTTTTGT
326 TAATTTTAGTGATTGCATGCTTAATTACGAAAAGGACTAAATCGCATAAAGTGCAAAAGTTTTGT
84051319 TCTACTAGCTAAAGGTGTCAAATAGCTATGGAATATTAAATTAGAGGTCTTTATTGAGTAAATAG
391 TCTACTAGCTAAAGGTGTCAAATAGCTATGGAATATTAAATTAGAGGTCTTTATTGAGTAAATAG
84051384 ACAACAAATTTGTTAATAGCTGATCATAGGGACAAAGAAATTGTAAGGTCAAAGTTAGGTGAAAA
456 ACAACAAATTTGTTAATAGCTGATCATAGGGACAAAGAAATTGTAAGGTCAAAGTTAGGTGAAAA
84051449 TTGGTGACTAAATTGACTAGATTTATAATAAAATAAAAAGAAAAAGATATCACCTTTCATATTTC
521 TTGGTGACTAAATTGACTAGATTTATAATAAAATAAAAAGAAAAAGATATCACCTTTCATATTTC
84051514 TCCTCTACACCGAAAATACCAGCAAAAATAGGGGTTTTGGAGCTTCAAAATTTCAGCCACTCTTT
586 TCCTCTACACCGAAAATACCAGCAAAAATAGGGGTTTTGGAGCTTCAAAATTTCAGCCACTCTTT
84051579 ACCCATACAAGTAAGTGATTTTGATGGCCTTTCTTGATAATTTTTGTACTTTTGGGACCCTTATA
651 ACCCATACAAGTAAGTGATTTTGATGGCCTTTCTTGATAATTTTTGTACTTTTGGGACCCTTATA
84051644 GCATAATCTAGCTAATGAGGGGACTATTTTGTAAAATGGTTCAAAGTTTGTGGTTTTTCCATGTG
716 GCATAATCTAGCTAATGAGGGGACTATTTTGTAAAATGGTTCAAAGTTTGTGGTTTTTCCATGTG
84051709 AGTGTTCATATTGTCTACTG
781 AGTGTTCATATTGTCTACTG
* *
84051729 AATTTTTATGGAAGAAAATGAATCATGATTGTTAAATATGGGAAATGTTTGAGTGGTTTTACGGA
1 AATTTTTATGGAAGAAAATGAATCATGATTGTTAAACAAGGGAAATGTTTGAGTGGTTTTACGGA
84051794 AGAAAATGAATCATAGTTTTAAAGACAAGGGAAATGTTTGAGTGGTTTTATGGCAAATTACCCAT
66 AGAAAATGAATCATAGTTTTAAAGACAAGGGAAATGTTTGAGTGGTTTTATGGCAAATTACCCAT
84051859 ATTTTTGGAATTTTGGAGGGAAATGATTACTTTGTAAAATAAGGGAATTGTGGAAGTGGCCTTGT
131 ATTTTTGGAATTTTGGAGGGAAATGATTACTTTGTAAAATAAGGGAATTGTGGAAGTGGCCTTGT
84051924 AACAGCCTGATTTTGGGCCTAATCGGGAAAATAGTTTCGAAACCACTAACTCGAGGTCAGTTAAA
196 AACAGCCTGATTTTGGGCCTAATCGGGAAAATAGTTTCGAAACCACTAACTCGAGGTCAGTTAAA
84051989 TTATTTTTAATATTATTTTATGTGTTGTAGCATGATTATATGAGTGCATGAAAATTTTGGTAAAA
261 TTATTTTTAATATTATTTTATGTGTTGTAGCATGATTATATGAGTGCATGAAAATTTTGGTAAAA
84052054 TAATTTTAGTGATTGCATGCTTAATTACGAAAAGGACTAAATCGCATAAAGTGCAAAAGTTTTGT
326 TAATTTTAGTGATTGCATGCTTAATTACGAAAAGGACTAAATCGCATAAAGTGCAAAAGTTTTGT
84052119 TCTACTAGCTAAAGGTGTCAAATAGCTATGGAATATTAAATTAGAGGTCTTTATTGAGTAAATAG
391 TCTACTAGCTAAAGGTGTCAAATAGCTATGGAATATTAAATTAGAGGTCTTTATTGAGTAAATAG
84052184 ACAACAAATTTGTTAATAGCTGATCATAGGGACAAAGAAATTGTAAGGTCAAAGTTAGGTGAAAA
456 ACAACAAATTTGTTAATAGCTGATCATAGGGACAAAGAAATTGTAAGGTCAAAGTTAGGTGAAAA
84052249 TTGGTGACTAAATTGACTAGATTTATAATAAAATAAAAAGAAAAAGATATCACCTTTCATATTTC
521 TTGGTGACTAAATTGACTAGATTTATAATAAAATAAAAAGAAAAAGATATCACCTTTCATATTTC
84052314 TCCTCTACACCGAAAATACCAGCAAAAATAGGGGTTTTGGAGCTTCAAAATTTCAGCCACTCTTT
586 TCCTCTACACCGAAAATACCAGCAAAAATAGGGGTTTTGGAGCTTCAAAATTTCAGCCACTCTTT
84052379 ACCCATACAAGTAAGTGATTTTGATGGCCTTTCTTGATAATTTTTGTACTTTTGGGACCCTTATA
651 ACCCATACAAGTAAGTGATTTTGATGGCCTTTCTTGATAATTTTTGTACTTTTGGGACCCTTATA
84052444 GCATAATCTAGCTAATGAGGGGACTATTTTGTAAAATGGTTCAAAGTTTGTGGTTTTTCCATGTG
716 GCATAATCTAGCTAATGAGGGGACTATTTTGTAAAATGGTTCAAAGTTTGTGGTTTTTCCATGTG
84052509 AGTGTTCATATTGTCTACTG
781 AGTGTTCATATTGTCTACTG
* *
84052529 AATTTTTATGGAAGAAAATGAATCATGATTGTTAAATATGGGAAATGTTTGAGTGGTTTTACGGA
1 AATTTTTATGGAAGAAAATGAATCATGATTGTTAAACAAGGGAAATGTTTGAGTGGTTTTACGGA
84052594 AGAAAATGAATCATAGTTTTAAAGACAAGGGAAATGTTTGAGTGGTTTTATGGCAAATTACCCAT
66 AGAAAATGAATCATAGTTTTAAAGACAAGGGAAATGTTTGAGTGGTTTTATGGCAAATTACCCAT
84052659 ATTTTTGGAATTTTGGAGGGAAATGATTACTTTGTAAAATAAGGGAATTGTGGAAGTGGCCTTGT
131 ATTTTTGGAATTTTGGAGGGAAATGATTACTTTGTAAAATAAGGGAATTGTGGAAGTGGCCTTGT
* * * * * * * * *
84052724 AACAACCTAATTTTGGGTCTAGTCGGGATAGTGGTTTCGAAACCACTAACTCGAGGTCGGATAAA
196 AACAGCCTGATTTTGGGCCTAATCGGGAAAATAGTTTCGAAACCACTAACTCGAGGTCAGTTAAA
* *
84052789 TTATTTTTAATATTATTCTATGTGTTGTAGCATGATTATTTGAGTGCATGAAAATTTTGGTAAAA
261 TTATTTTTAATATTATTTTATGTGTTGTAGCATGATTATATGAGTGCATGAAAATTTTGGTAAAA
** ** *
84052854 TAATTTTAGCAATTGCATGCTTAATTGTGAAAAAGGACTAAATAGCATAAAGTG-AGAAAGTTTT
326 TAATTTTAGTGATTGCATGCTTAATTACG-AAAAGGACTAAATCGCATAAAGTGCA-AAAGTTTT
* * *
84052918 GTTCTACTAGCTAAAGGTGTCAAATAG-TATGAAACATTAAATTAGACGTCTTTATTGAGTAAAT
389 GTTCTACTAGCTAAAGGTGTCAAATAGCTATGGAATATTAAATTAGAGGTCTTTATTGAGTAAAT
* * * *
84052982 AGACCACAAATTTATAAATAGCTGATCATAGGGACAAAGAAATTGTAAGGTCGAAGTTAGGTG-A
454 AGACAACAAATTTGTTAATAGCTGATCATAGGGACAAAGAAATTGTAAGGTCAAAGTTAGGTGAA
* * *
84053046 AATTGGGTGACTAAATTGACTAGATTTGTAATAAAATAAAAATAAAAAGATATCACCTTTCATCT
519 AATT-GGTGACTAAATTGACTAGATTTATAATAAAATAAAAAGAAAAAGATATCACCTTTCATAT
* * * *
84053111 TTCTCTTGTCCACCAAAAATACCAGCAAAAATAGGGGTTTTGGAGCTTCAAAATTTCAGCCACTC
583 TTCTCCTCTACACCGAAAATACCAGCAAAAATAGGGGTTTTGGAGCTTCAAAATTTCAGCCACTC
84053176 TTTACCCATACAAGTAAGTGATTTTGATGGCCTTTCTTGATAATTTTTGTACTTTTGGGACCCTT
648 TTTACCCATACAAGTAAGTGATTTTGATGGCCTTTCTTGATAATTTTTGTACTTTTGGGACCCTT
* * * * * * ** *
84053241 GTAGCATAATCTAACTAATGAGGGGACTATTTTGCAAAATAGTTGAAAGTATAAGGTTTTCCCAT
713 ATAGCATAATCTAGCTAATGAGGGGACTATTTTGTAAAATGGTTCAAAGTTTGTGGTTTTTCCAT
* * * * *
84053306 GAGAGTGTTAATGTTGTTTGCTG
778 GTGAGTGTTCATATTGTCTACTG
* * **
84053329 AATATTTATGGAAGAAAATGAATCATGGTTGTTAAACAAGGGAAATGTTTGAGTGGTTTTATAGA
1 AATTTTTATGGAAGAAAATGAATCATGATTGTTAAACAAGGGAAATGTTTGAGTGGTTTTACGGA
* * * * *
84053394 AGAAAATGAATAATAGTTTTAAAGACGAGAGAAATTTTTAAGTGGTTTTATGGCAAATTACCCAT
66 AGAAAATGAATCATAGTTTTAAAGACAAGGGAAATGTTTGAGTGGTTTTATGGCAAATTACCCAT
* * *
84053459 ATTTTTTGAATTTTGGAGGGAAATGGTTACTTTGTAAAACAAGGGAATTGTGG
131 ATTTTTGGAATTTTGGAGGGAAATGATTACTTTGTAAAATAAGGGAATTGTGG
84053512 GTGTAACACC
Statistics
Matches: 1708, Mismatches: 72, Indels: 6
0.96 0.04 0.00
Matches are distributed among these distances:
799 5 0.00
800 1645 0.96
801 58 0.03
ACGTcount: A:0.35, C:0.11, G:0.20, T:0.34
Consensus pattern (800 bp):
AATTTTTATGGAAGAAAATGAATCATGATTGTTAAACAAGGGAAATGTTTGAGTGGTTTTACGGA
AGAAAATGAATCATAGTTTTAAAGACAAGGGAAATGTTTGAGTGGTTTTATGGCAAATTACCCAT
ATTTTTGGAATTTTGGAGGGAAATGATTACTTTGTAAAATAAGGGAATTGTGGAAGTGGCCTTGT
AACAGCCTGATTTTGGGCCTAATCGGGAAAATAGTTTCGAAACCACTAACTCGAGGTCAGTTAAA
TTATTTTTAATATTATTTTATGTGTTGTAGCATGATTATATGAGTGCATGAAAATTTTGGTAAAA
TAATTTTAGTGATTGCATGCTTAATTACGAAAAGGACTAAATCGCATAAAGTGCAAAAGTTTTGT
TCTACTAGCTAAAGGTGTCAAATAGCTATGGAATATTAAATTAGAGGTCTTTATTGAGTAAATAG
ACAACAAATTTGTTAATAGCTGATCATAGGGACAAAGAAATTGTAAGGTCAAAGTTAGGTGAAAA
TTGGTGACTAAATTGACTAGATTTATAATAAAATAAAAAGAAAAAGATATCACCTTTCATATTTC
TCCTCTACACCGAAAATACCAGCAAAAATAGGGGTTTTGGAGCTTCAAAATTTCAGCCACTCTTT
ACCCATACAAGTAAGTGATTTTGATGGCCTTTCTTGATAATTTTTGTACTTTTGGGACCCTTATA
GCATAATCTAGCTAATGAGGGGACTATTTTGTAAAATGGTTCAAAGTTTGTGGTTTTTCCATGTG
AGTGTTCATATTGTCTACTG
Found at i:84052642 original size:54 final size:53
Alignment explanation
Indices: 84052532--84052643 Score: 156
Period size: 53 Copynumber: 2.1 Consensus size: 53
84052522 TCTACTGAAT
* * *
84052532 TTTTATGGAAGAAAATGAATCATGATTGTTAAATATGGGAAATGTTTGAGTGG
1 TTTTACGGAAGAAAATGAATCATGATTGTTAAACAAGGGAAATGTTTGAGTGG
84052585 TTTTACGGAAGAAAATGAATCAT-AGTT-TTAAAGACAAGGGAAATGTTTGAGTGG
1 TTTTACGGAAGAAAATGAATCATGA-TTGTT-AA-ACAAGGGAAATGTTTGAGTGG
84052639 TTTTA
1 TTTTA
84052644 TGGCAAATTA
Statistics
Matches: 53, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
52 3 0.06
53 26 0.49
54 24 0.45
ACGTcount: A:0.37, C:0.04, G:0.25, T:0.35
Consensus pattern (53 bp):
TTTTACGGAAGAAAATGAATCATGATTGTTAAACAAGGGAAATGTTTGAGTGG
Found at i:84053399 original size:53 final size:54
Alignment explanation
Indices: 84053333--84053444 Score: 138
Period size: 53 Copynumber: 2.1 Consensus size: 54
84053323 TTGCTGAATA
* * * * *
84053333 TTTATGGAAGAAAATGAATCATGGTTGTT-AA-ACAAGGGAAATGTTTGAGTGGT
1 TTTATAGAAGAAAATGAATAATAGTT-TTAAAGACAAGAGAAATGTTTAAGTGGT
* *
84053386 TTTATAGAAGAAAATGAATAATAGTTTTAAAGACGAGAGAAATTTTTAAGTGGT
1 TTTATAGAAGAAAATGAATAATAGTTTTAAAGACAAGAGAAATGTTTAAGTGGT
84053440 TTTAT
1 TTTAT
84053445 GGCAAATTAC
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
52 2 0.04
53 25 0.50
54 23 0.46
ACGTcount: A:0.39, C:0.03, G:0.23, T:0.35
Consensus pattern (54 bp):
TTTATAGAAGAAAATGAATAATAGTTTTAAAGACAAGAGAAATGTTTAAGTGGT
Found at i:84055912 original size:21 final size:21
Alignment explanation
Indices: 84055880--84055969 Score: 144
Period size: 21 Copynumber: 4.3 Consensus size: 21
84055870 ACGCATCGAA
*
84055880 TCCTCTGGCTCCCAAGTAGCC
1 TCCTCCGGCTCCCAAGTAGCC
*
84055901 TACTCCGGCTCCCAAGTAGCC
1 TCCTCCGGCTCCCAAGTAGCC
* *
84055922 TTCTCCGGCTACCAAGTAGCC
1 TCCTCCGGCTCCCAAGTAGCC
84055943 TCCTCCGGCTCCCAAGTAGCC
1 TCCTCCGGCTCCCAAGTAGCC
84055964 TCCTCC
1 TCCTCC
84055970 ATGCTATGAT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 63 1.00
ACGTcount: A:0.16, C:0.44, G:0.18, T:0.22
Consensus pattern (21 bp):
TCCTCCGGCTCCCAAGTAGCC
Found at i:84057695 original size:25 final size:25
Alignment explanation
Indices: 84057620--84057687 Score: 91
Period size: 26 Copynumber: 2.7 Consensus size: 25
84057610 GCCAACACAC
84057620 CAGTATCGCAGCAAAGCTGCCAGTAA
1 CAGTATCGCAGCAAAGCTGCCAGT-A
* * *
84057646 TAATATCGCAGCAAGGCTGCCAGTA
1 CAGTATCGCAGCAAAGCTGCCAGTA
*
84057671 CAGTAACGCAGCAAAGC
1 CAGTATCGCAGCAAAGC
84057688 CGCTAGTATC
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
25 14 0.40
26 21 0.60
ACGTcount: A:0.35, C:0.26, G:0.24, T:0.15
Consensus pattern (25 bp):
CAGTATCGCAGCAAAGCTGCCAGTA
Found at i:84062295 original size:26 final size:26
Alignment explanation
Indices: 84062266--84062318 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
84062256 TCAAACATGC
84062266 ATTTAGGTCAACTTAAC-CCTAGGGGT
1 ATTTAGGT-AACTTAACTCCTAGGGGT
* * *
84062292 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAGGTAACTTAACTCCTAGGGGT
84062318 A
1 A
84062319 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.36
Consensus pattern (26 bp):
ATTTAGGTAACTTAACTCCTAGGGGT
Found at i:84063840 original size:26 final size:26
Alignment explanation
Indices: 84063804--84063904 Score: 184
Period size: 26 Copynumber: 3.9 Consensus size: 26
84063794 AATGCCCATC
84063804 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
84063830 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
* *
84063856 TGGAATATTTACCTAATCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
84063882 TGGAACATTTACCTAACCCATTA
1 TGGAACATTTACCTAACCCATTA
84063905 CCAATTTGTA
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.35, C:0.25, G:0.08, T:0.33
Consensus pattern (26 bp):
TGGAACATTTACCTAACCCATTATCA
Found at i:84066725 original size:26 final size:25
Alignment explanation
Indices: 84066692--84066741 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
84066682 TAATAATATC
84066692 GCAGTAAGGCTGCCAGTA-CAGTAAT
1 GCAGTAA-GCTGCCAGTATCAGTAAT
84066717 GCAGCTAAGCTGCCAGTATCAGTAA
1 GCAG-TAAGCTGCCAGTATCAGTAA
84066742 ATGTGGCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.32, C:0.22, G:0.26, T:0.20
Consensus pattern (25 bp):
GCAGTAAGCTGCCAGTATCAGTAAT
Found at i:84066728 original size:25 final size:26
Alignment explanation
Indices: 84066659--84066741 Score: 86
Period size: 26 Copynumber: 3.2 Consensus size: 26
84066649 ACCAACACAC
*
84066659 CAGT-ATCGCAGCAAAGCTGCCAGTA
1 CAGTAATCGCAGCTAAGCTGCCAGTA
84066684 -A-TAATATCGCAG-TAAGGCTGCCAGTA
1 CAGT-A-ATCGCAGCTAA-GCTGCCAGTA
84066710 CAGTAAT-GCAGCTAAGCTGCCAGTA
1 CAGTAATCGCAGCTAAGCTGCCAGTA
84066735 TCAGTAA
1 -CAGTAA
84066742 ATGTGGCAAA
Statistics
Matches: 49, Mismatches: 1, Indels: 15
0.75 0.02 0.23
Matches are distributed among these distances:
23 1 0.02
24 1 0.02
25 16 0.33
26 28 0.57
27 2 0.04
28 1 0.02
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (26 bp):
CAGTAATCGCAGCTAAGCTGCCAGTA
Found at i:84071829 original size:66 final size:66
Alignment explanation
Indices: 84071714--84071845 Score: 219
Period size: 66 Copynumber: 2.0 Consensus size: 66
84071704 TCCCTAAGTA
* * *
84071714 AGATTAAGGAACTCCCGCCTCTGAGTGTCAATATAACTAGCCCCCACATACTTACTCTAGAAAGC
1 AGATTAAGGAAATCCCGCCTCCGAGTGTCAATATAACTAACCCCCACATACTTACTCTAGAAAGC
84071779 C
66 C
* *
84071780 AGATTAAGGAAATCCCGCCTCCGAGTGTCAATATAACTAACCCCTACATACTTACTCTGGAAAGC
1 AGATTAAGGAAATCCCGCCTCCGAGTGTCAATATAACTAACCCCCACATACTTACTCTAGAAAGC
84071845 C
66 C
84071846 GTCTTAAATA
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
66 61 1.00
ACGTcount: A:0.33, C:0.30, G:0.15, T:0.23
Consensus pattern (66 bp):
AGATTAAGGAAATCCCGCCTCCGAGTGTCAATATAACTAACCCCCACATACTTACTCTAGAAAGC
C
Found at i:84077158 original size:79 final size:80
Alignment explanation
Indices: 84077059--84077241 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 80
84077049 TACTCGTTCA
* * *
84077059 AATGCCTTTGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
84077122 ATTTAGTAAC-TCGCACC
64 ATATAGTAACTTAGCA-C
**
84077139 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
* *
84077203 ATGGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
84077218 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
84077242 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 27 0.30
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:84077241 original size:40 final size:40
Alignment explanation
Indices: 84077038--84077241 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
84077028 CGGAATTTAA
** * *
84077038 CCGGATATAGCT-ACTCGTTCAAATGCCTTTGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
84077078 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
84077118 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
84077157 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
84077197 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
84077237 CCGGA
1 CCGGA
84077242 CATCATTCGA
Statistics
Matches: 140, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 93 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:84086872 original size:13 final size:13
Alignment explanation
Indices: 84086854--84086880 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
84086844 GCTCGGCAGG
84086854 GACACGCCCGTGT
1 GACACGCCCGTGT
84086867 GACACGCCCGTGT
1 GACACGCCCGTGT
84086880 G
1 G
84086881 CGATTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:84088973 original size:48 final size:48
Alignment explanation
Indices: 84088902--84089135 Score: 197
Period size: 48 Copynumber: 4.9 Consensus size: 48
84088892 TTTGGGTGAT
*
84088902 ATGAGTGCCAGTGTAAGACCATGTCTGGGACATCGCATCGACCACAAC
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATCGCATCGACCACAAC
* * ***
84088950 ATGAGAGCCAGTGTTAGACCATGTCTGGGAAATCGCATC-AGCCACCTT
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATCGCATCGA-CCACAAC
* * ** *
84088998 ATGAGAGCCAGTCG-AAGACCATGTCTGGGACAT-GACATTGACAATGAG
1 ATGAGAGCCAGT-GTAAGACCATGTCTGGGACATCG-CATCGACCACAAC
* * * * * *
84089046 ACGAGAGCTAGTGTAAGACCATGTCTGGGACAT-GACACCGGCCTCGAC
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATCG-CATCGACCACAAC
* * * * * *
84089094 ATGTGAGCTAGTGTAAGACCATGTTTGGAATATGGCATCGAC
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATCGCATCGAC
84089136 AATTCACCCT
Statistics
Matches: 150, Mismatches: 30, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
47 3 0.02
48 144 0.96
49 3 0.02
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.21
Consensus pattern (48 bp):
ATGAGAGCCAGTGTAAGACCATGTCTGGGACATCGCATCGACCACAAC
Found at i:84089065 original size:96 final size:96
Alignment explanation
Indices: 84088901--84089075 Score: 237
Period size: 96 Copynumber: 1.8 Consensus size: 96
84088891 ATTTGGGTGA
* * * *
84088901 TATGAGTGCCAGTGTAAGACCATGTCTGGGACATCGCATCGACCACAACATGAGAGCCAGTGTTA
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATCGCATCGACAACAACACGAGAGCCAGTGTAA
84088966 GACCATGTCTGGGAAATCGCATCAGCCACCT
66 GACCATGTCTGGGAAATCGCATCAGCCACCT
* ** * *
84088997 TATGAGAGCCAGTCG-AAGACCATGTCTGGGACAT-GACATTGACAATGAGACGAGAGCTAGTGT
1 TATGAGAGCCAGT-GTAAGACCATGTCTGGGACATCG-CATCGACAACAACACGAGAGCCAGTGT
84089060 AAGACCATGTCTGGGA
64 AAGACCATGTCTGGGA
84089076 CATGACACCG
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
95 1 0.01
96 66 0.97
97 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.27, T:0.21
Consensus pattern (96 bp):
TATGAGAGCCAGTGTAAGACCATGTCTGGGACATCGCATCGACAACAACACGAGAGCCAGTGTAA
GACCATGTCTGGGAAATCGCATCAGCCACCT
Found at i:84089112 original size:96 final size:96
Alignment explanation
Indices: 84088902--84089137 Score: 226
Period size: 96 Copynumber: 2.5 Consensus size: 96
84088892 TTTGGGTGAT
* * * *
84088902 ATGAGTGCCAGTGTAAGACCATGTCTGGGACATCGCATCGACCACAACATGAGAGCCAGTGTTAG
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATCGCATCGACAACAACACGAGAGCCAGTGTAAG
* **
84088967 ACCATGTCTGGGAAATCGCATCAGCCACCTT
66 ACCATGTCTGGGAAATCGCACCAGCCACCAC
* ** * *
84088998 ATGAGAGCCAGTCG-AAGACCATGTCTGGGACAT-GACATTGACAATGAGACGAGAGCTAGTGTA
1 ATGAGAGCCAGT-GTAAGACCATGTCTGGGACATCG-CATCGACAACAACACGAGAGCCAGTGTA
* * * *
84089061 AGACCATGTCTGGGACAT-GACACCGGCCTCGAC
64 AGACCATGTCTGGGAAATCG-CACCAGCCACCAC
* * * * * *
84089094 ATGTGAGCTAGTGTAAGACCATGTTTGGAATATGGCATCGACAA
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATCGCATCGACAA
84089138 TTCACCCTCT
Statistics
Matches: 113, Mismatches: 22, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
95 3 0.03
96 108 0.96
97 2 0.02
ACGTcount: A:0.30, C:0.22, G:0.27, T:0.21
Consensus pattern (96 bp):
ATGAGAGCCAGTGTAAGACCATGTCTGGGACATCGCATCGACAACAACACGAGAGCCAGTGTAAG
ACCATGTCTGGGAAATCGCACCAGCCACCAC
Found at i:84096083 original size:53 final size:54
Alignment explanation
Indices: 84096012--84096126 Score: 180
Period size: 54 Copynumber: 2.1 Consensus size: 54
84096002 TTTGCTGAAT
*
84096012 TTTTATGGAAGAAAATGAATCATGGTTGTT-AA-ACAAGGAAAATGTTTGAGTGG
1 TTTTATGGAAGAAAATGAATCATAGTT-TTAAAGACAAGGAAAATGTTTGAGTGG
* *
84096065 TTTTATGGAAGAACATGAATCATAGTTTTAAAGACAAGGGAAATGTTTGAGTGG
1 TTTTATGGAAGAAAATGAATCATAGTTTTAAAGACAAGGAAAATGTTTGAGTGG
84096119 TTTTATGG
1 TTTTATGG
84096127 CAAATTACCC
Statistics
Matches: 57, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
52 2 0.04
53 27 0.47
54 28 0.49
ACGTcount: A:0.36, C:0.04, G:0.26, T:0.34
Consensus pattern (54 bp):
TTTTATGGAAGAAAATGAATCATAGTTTTAAAGACAAGGAAAATGTTTGAGTGG
Found at i:84096386 original size:26 final size:26
Alignment explanation
Indices: 84096350--84096402 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
84096340 TGCATGCTTT
84096350 ATTGTGAAAAAGGACTAAATCGCATA
1 ATTGTGAAAAAGGACTAAATCGCATA
84096376 ATTGTGAAAAAGGACTAAATCGCATA
1 ATTGTGAAAAAGGACTAAATCGCATA
84096402 A
1 A
84096403 AGTGCGAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.47, C:0.11, G:0.19, T:0.23
Consensus pattern (26 bp):
ATTGTGAAAAAGGACTAAATCGCATA
Found at i:84096939 original size:52 final size:52
Alignment explanation
Indices: 84096832--84097000 Score: 266
Period size: 52 Copynumber: 3.2 Consensus size: 52
84096822 TTTGCTGAAT
* * *
84096832 TTTTATGGAAGAAAATGAATCATGGTTGTTAAACAAGGAAAATGTTTGAGTGG
1 TTTTATGGAAGAACATGAATCATAGTT-TTAAACAAGGGAAATGTTTGAGTGG
*
84096885 TTTTATGGAAGAACATGAATCATAGTTCTAAACAAGGGAAATGTTTGAGTGG
1 TTTTATGGAAGAACATGAATCATAGTTTTAAACAAGGGAAATGTTTGAGTGG
*
84096937 TTTTATGGAAGAACATGAATCATAGTTTTAAAGACAAGGGAAATGTTTGAGTGA
1 TTTTATGGAAGAACATGAATCATAGTTTT-AA-ACAAGGGAAATGTTTGAGTGG
84096991 TTTTATGGAA
1 TTTTATGGAA
84097001 AATTACCTAT
Statistics
Matches: 108, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
52 51 0.47
53 27 0.25
54 30 0.28
ACGTcount: A:0.37, C:0.05, G:0.25, T:0.33
Consensus pattern (52 bp):
TTTTATGGAAGAACATGAATCATAGTTTTAAACAAGGGAAATGTTTGAGTGG
Found at i:84097258 original size:26 final size:26
Alignment explanation
Indices: 84097222--84097274 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
84097212 TGCATGCTTT
84097222 ATTGTGAAAAAGGACTAAATCGCATA
1 ATTGTGAAAAAGGACTAAATCGCATA
84097248 ATTGTGAAAAAGGACTAAATCGCATA
1 ATTGTGAAAAAGGACTAAATCGCATA
84097274 A
1 A
84097275 AGTGCGAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.47, C:0.11, G:0.19, T:0.23
Consensus pattern (26 bp):
ATTGTGAAAAAGGACTAAATCGCATA
Found at i:84098373 original size:48 final size:48
Alignment explanation
Indices: 84098295--84098621 Score: 216
Period size: 48 Copynumber: 6.8 Consensus size: 48
84098285 GGTGATATGA
* *
84098295 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGACGTGT
1 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGACGTGT
* * * *
84098343 GTGCTAGTGTAAGACCATGCCTGGGGCATGGCATCAACATTGATGTGT
1 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGACGTGT
** * * * *
84098391 GTATTAGTGTAAAACCATGTCTGGGACATGGCATCGACCA-TAACATGA
1 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGA-CATTGACGTGT
* * * * * * *
84098439 GAGCCAGTGTTAGACCATGTCTGAGAAATGTCATC-ATCCACCTT-A--TGA
1 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGA--CA--TTGACGTGT
* * * * * * *
84098487 GAGCCAGTGGAAGACCATGTCTGGGACATGGCATTGACAATGA-GACGA
1 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGACG-TGT
* * * * * * * *
84098535 GAGCTAGTGTAAGGCCATGTCTAGGACATGGCATGGGCCTCGACATGT
1 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGACGTGT
* * * *
84098583 GAGCTAGTGTAAGACCATGTTTGGAACATGGCATTGACA
1 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACA
84098622 ATTCACCCTC
Statistics
Matches: 217, Mismatches: 52, Indels: 20
0.75 0.18 0.07
Matches are distributed among these distances:
45 1 0.00
46 1 0.00
47 3 0.01
48 207 0.95
49 3 0.01
50 1 0.00
51 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (48 bp):
GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGACGTGT
Found at i:84102512 original size:25 final size:25
Alignment explanation
Indices: 84102484--84102553 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
84102474 CTCTTTTAAT
*
84102484 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
84102509 AACTGGGGCAAAGCTCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
84102534 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
84102554 AGCACTTTCT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:84102624 original size:11 final size:11
Alignment explanation
Indices: 84102600--84102629 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
84102590 AAATGTGAAT
84102600 ATATCATG-GC
1 ATATCATGTGC
84102610 ATATCATGTGC
1 ATATCATGTGC
84102621 ATATCATGT
1 ATATCATGT
84102630 ACAAAAGCAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 8 0.42
11 11 0.58
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.37
Consensus pattern (11 bp):
ATATCATGTGC
Found at i:84110378 original size:24 final size:24
Alignment explanation
Indices: 84110351--84110434 Score: 80
Period size: 25 Copynumber: 3.4 Consensus size: 24
84110341 ATGGAGTCCT
84110351 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTAATAAACTGGGGCAA
* *
84110375 AGCCCTTTTTGATAAACTTGGGCAA
1 AGCCC-TTTTAATAAACTGGGGCAA
** *
84110400 AGCCCTTTTCGGTAAACTAGGGCAA
1 AGCCCTTTT-AATAAACTGGGGCAA
*
84110425 AACCCTTTTA
1 AGCCCTTTTA
84110435 GAACTTCCTC
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
23 1 0.02
24 14 0.27
25 36 0.71
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGGGGCAA
Found at i:84110398 original size:25 final size:25
Alignment explanation
Indices: 84110364--84110433 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
84110354 CTCTTTTAAT
* *
84110364 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTAGGGCAAAGCCCTTTTCGATA
* *
84110389 AACTTGGGCAAAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGATA
*
84110414 AACTAGGGCAAAACCCTTTT
1 AACTAGGGCAAAGCCCTTTT
84110434 AGAACTTCCT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTCGATA
Found at i:84110492 original size:10 final size:10
Alignment explanation
Indices: 84110479--84110514 Score: 63
Period size: 10 Copynumber: 3.5 Consensus size: 10
84110469 CATATGTGAA
84110479 CATATCATGG
1 CATATCATGG
84110489 CATATCATGTG
1 CATATCATG-G
84110500 CATATCATGG
1 CATATCATGG
84110510 CATAT
1 CATAT
84110515 AATGTACAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 15 0.60
11 10 0.40
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (10 bp):
CATATCATGG
Found at i:84110505 original size:21 final size:21
Alignment explanation
Indices: 84110479--84110519 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
84110469 CATATGTGAA
*
84110479 CATATCATGGCATATCATGTG
1 CATATCATGGCATATAATGTG
84110500 CATATCATGGCATATAATGT
1 CATATCATGGCATATAATGT
84110520 ACAAAAGCAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (21 bp):
CATATCATGGCATATAATGTG
Found at i:84118030 original size:28 final size:28
Alignment explanation
Indices: 84117969--84118068 Score: 128
Period size: 29 Copynumber: 3.5 Consensus size: 28
84117959 ATAGTAAGTC
*
84117969 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
84117998 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
84118026 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
84118055 CGCACACTTAGTGC
1 CGCACACTTAGTGC
84118069 CAATCTCATG
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
28 31 0.49
29 32 0.51
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:84122999 original size:51 final size:51
Alignment explanation
Indices: 84122923--84123025 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
84122913 TCTCCAAGAG
84122923 TTATACTAGTGGCCAGGATTGAAGCATGAGGTTATTGACTTTGTTGCTTGT
1 TTATACTAGTGGCCAGGATTGAAGCATGAGGTTATTGACTTTGTTGCTTGT
84122974 TTATACTAGTGGCCAGGATTGAAGCATGAGGTTATTGACTTTGTTGCTTGT
1 TTATACTAGTGGCCAGGATTGAAGCATGAGGTTATTGACTTTGTTGCTTGT
84123025 T
1 T
84123026 GTTTGACTTG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.21, C:0.12, G:0.27, T:0.40
Consensus pattern (51 bp):
TTATACTAGTGGCCAGGATTGAAGCATGAGGTTATTGACTTTGTTGCTTGT
Done.