Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 257 of 276
Found at i:85192143 original size:6 final size:6
Alignment explanation
Indices: 85192132--85192157 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
85192122 ACAAATCCGA
85192132 AACAGT AACAGT AACAGT AACAGT AA
1 AACAGT AACAGT AACAGT AACAGT AA
85192158 GGTACAGAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.54, C:0.15, G:0.15, T:0.15
Consensus pattern (6 bp):
AACAGT
Found at i:85192193 original size:57 final size:59
Alignment explanation
Indices: 85192072--85192200 Score: 160
Period size: 57 Copynumber: 2.2 Consensus size: 59
85192062 CCGTATCGGT
*
85192072 AACAGTAA-AGGTAACAGTAACAGTAGCGGTACACAGAGTACCTCATTGGAACAAATCCGA
1 AACAGTAACA-GTAACAGTAACAGTAGAGGTA-ACAGAGTACCTCATTGGAACAAATCCGA
*
85192132 AACAGTAACAGTAACAGTAACAGTA-AGGT-ACAGAGTACCTC-TTCGGAACGAATCC-A
1 AACAGTAACAGTAACAGTAACAGTAGAGGTAACAGAGTACCTCATT-GGAACAAATCCGA
*
85192188 GAACAGTCACAGT
1 -AACAGTAACAGT
85192201 GGTCGACACT
Statistics
Matches: 63, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
56 3 0.05
57 33 0.52
59 3 0.05
60 23 0.37
61 1 0.02
ACGTcount: A:0.41, C:0.21, G:0.21, T:0.17
Consensus pattern (59 bp):
AACAGTAACAGTAACAGTAACAGTAGAGGTAACAGAGTACCTCATTGGAACAAATCCGA
Found at i:85194946 original size:9 final size:9
Alignment explanation
Indices: 85194932--85194963 Score: 55
Period size: 9 Copynumber: 3.4 Consensus size: 9
85194922 GATCAAGTAA
85194932 AATAAAATT
1 AATAAAATT
85194941 AATAAAATT
1 AATAAAATT
85194950 AATTAAAATT
1 AA-TAAAATT
85194960 AATA
1 AATA
85194964 TGATATTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 13 0.59
10 9 0.41
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (9 bp):
AATAAAATT
Found at i:85194958 original size:10 final size:10
Alignment explanation
Indices: 85194934--85194962 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
85194924 TCAAGTAAAA
85194934 TAAAATTAA-
1 TAAAATTAAT
85194943 TAAAATTAAT
1 TAAAATTAAT
85194953 TAAAATTAAT
1 TAAAATTAAT
85194963 ATGATATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.47
10 10 0.53
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
TAAAATTAAT
Found at i:85195324 original size:21 final size:21
Alignment explanation
Indices: 85195283--85195325 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
85195273 TTTAGTTAAG
* *
85195283 TTTTAATTACATTTCCAAAAA
1 TTTTAATTAAATTTCAAAAAA
85195304 TTTTAATTAAATTT-AATAAAA
1 TTTTAATTAAATTTCAA-AAAA
85195325 T
1 T
85195326 GTGTAATTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (21 bp):
TTTTAATTAAATTTCAAAAAA
Found at i:85198679 original size:48 final size:48
Alignment explanation
Indices: 85198490--85198719 Score: 197
Period size: 48 Copynumber: 4.9 Consensus size: 48
85198480 AGGTAGGGTA
* * *
85198490 CCAATGCCATATCCCAGATATGGTCTTACATGGGACCACATAACGATG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAACGATG
* * * *
85198538 CCAATGTCATGTCCCAGACATGATCTTTCATGGGATCAC---AC-ATA
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAACGATG
* * * * * *
85198582 TCAAAGCCGATAG-CCCA-ACTATGGTCTTACA--CGATGACTTATTATGATG
1 CCAATGCC-AT-GTCCCAGAC-ATGGTCTTACATGGGATCAC--ATAACGATG
* *
85198631 CCAATGCCATGTCCCGGACATGGTCTTACATGGGTTCACATAACGATG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAACGATG
* * *
85198679 CCAAAGCTATGTCCTAGACATGGTCTTACATGGGATCACAT
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACAT
85198720 GTCACTGCCG
Statistics
Matches: 140, Mismatches: 29, Indels: 26
0.72 0.15 0.13
Matches are distributed among these distances:
43 5 0.04
44 9 0.06
45 17 0.12
46 1 0.01
47 1 0.01
48 93 0.66
49 10 0.07
50 4 0.03
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (48 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAACGATG
Found at i:85198750 original size:48 final size:48
Alignment explanation
Indices: 85198490--85198754 Score: 163
Period size: 48 Copynumber: 5.6 Consensus size: 48
85198480 AGGTAGGGTA
* * * * *
85198490 CCAATGCCATATCCCAGATATGGTCTTACATGGGACCACATAACGATG
1 CCAAAGCCATGTCCCTGACATGGTCTTACATGGGATCACATAACGATG
* * * * * *
85198538 CCAATGTCATGTCCCAGACATGATCTTTCATGGGATCAC---AC-ATA
1 CCAAAGCCATGTCCCTGACATGGTCTTACATGGGATCACATAACGATG
* * * * * *
85198582 TCAAAGCCGATAG-CCC-AACTATGGTCTTACA--CGATGACTTATTATGATG
1 CCAAAGCC-AT-GTCCCTGAC-ATGGTCTTACATGGGATCAC--ATAACGATG
* * *
85198631 CCAATGCCATGTCCCGGACATGGTCTTACATGGGTTCACATAACGATG
1 CCAAAGCCATGTCCCTGACATGGTCTTACATGGGATCACATAACGATG
* **
85198679 CCAAAGCTATGT-CCTAGACATGGTCTTACATGGGATCACATGTC-ACTG
1 CCAAAGCCATGTCCCT-GACATGGTCTTACATGGGATCACATAACGA-TG
* * *
85198727 CCGAAGCCATATCCCTGATATGGTCTTA
1 CCAAAGCCATGTCCCTGACATGGTCTTA
85198755 TACGGGAGCT
Statistics
Matches: 166, Mismatches: 35, Indels: 32
0.71 0.15 0.14
Matches are distributed among these distances:
43 5 0.03
44 9 0.05
45 16 0.10
46 1 0.01
47 4 0.02
48 114 0.69
49 13 0.08
50 4 0.02
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (48 bp):
CCAAAGCCATGTCCCTGACATGGTCTTACATGGGATCACATAACGATG
Found at i:85200524 original size:84 final size:83
Alignment explanation
Indices: 85200418--85200578 Score: 200
Period size: 84 Copynumber: 1.9 Consensus size: 83
85200408 CTTGTGACTT
* *** * * *
85200418 GTCGATTAAGATTGCAACCTTATACTTATTGGAT-TTTTCGAATCTTGTAGTTTGTCGATTTAAG
1 GTCGATTAAGATCGCAACCTTATACTTACAAGATATTTT-GAATCTTGCAGCTTGTCGATTTAAA
85200482 ATCGCAA-CCTTATCGGCTC
65 ATCG-AAGCCTTATCGGCTC
* *
85200501 GTCGATTTAAGATCGCAATCTTATACTTACAAGATATTTTGAATCTTGCAGCTTGTTGATTTAAA
1 GTCGA-TTAAGATCGCAACCTTATACTTACAAGATATTTTGAATCTTGCAGCTTGTCGATTTAAA
85200566 ATCGAAGCCTTAT
65 ATCGAAGCCTTAT
85200579 ACTTACAAGA
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
83 7 0.11
84 55 0.83
85 4 0.06
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.39
Consensus pattern (83 bp):
GTCGATTAAGATCGCAACCTTATACTTACAAGATATTTTGAATCTTGCAGCTTGTCGATTTAAAA
TCGAAGCCTTATCGGCTC
Found at i:85200578 original size:54 final size:53
Alignment explanation
Indices: 85200501--85200861 Score: 286
Period size: 54 Copynumber: 6.7 Consensus size: 53
85200491 TTATCGGCTC
* *
85200501 GTCGATTTAAGATCGCAA-TCTTATACTTACAAGATATTTTGAATCTTGCAGCTT
1 GTCGATTTAATATCG-AAGCCTTATACTTACAAGAT-TTTTGAATCTTGCAGCTT
* * * * * *
85200555 GTTGATTTAAAATCGAAGCCTTATACTTACAAGATTTTTTGTATCTTACGGCTC
1 GTCGATTTAATATCGAAGCCTTATACTTACAAGA-TTTTTGAATCTTGCAGCTT
* *
85200609 GTCAATTTAATATCGCAA-CCTTATACTTATAAGATTTTTTGAATCTTGCAGC-T
1 GTCGATTTAATATCG-AAGCCTTATACTTACAAGA-TTTTTGAATCTTGCAGCTT
* * * * * *
85200662 CTCTGATTTAATATTGCAGCCTTATACTTAAAAGATTTTCTGAATCTTG-TGGTT
1 GTC-GATTTAATATCGAAGCCTTATACTTACAAGATTTT-TGAATCTTGCAGCTT
*
85200716 -TACTGATTTAATATCGCAA-CCTTATACTTACAAGATTTTTCATATCTTGCCA-CTT
1 GT-C-GATTTAATATCG-AAGCCTTATACTTACAAGATTTTTGA-ATCTTG-CAGCTT
* * * * * * ** *
85200771 ATCAATTTAAGATCGCATCTTTATACTTACAAGATTATCAGAATCTTGCAGCTC
1 GTCGATTTAATATCGAAGCCTTATACTTACAAGATT-TTTGAATCTTGCAGCTT
* * * *
85200825 GTCGATGTAAGATCGCAGACTTATACTTACAAGATTT
1 GTCGATTTAATATCGAAGCCTTATACTTACAAGATTT
85200862 CGAAAATCTT
Statistics
Matches: 249, Mismatches: 42, Indels: 33
0.77 0.13 0.10
Matches are distributed among these distances:
53 17 0.07
54 222 0.89
55 9 0.04
56 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.40
Consensus pattern (53 bp):
GTCGATTTAATATCGAAGCCTTATACTTACAAGATTTTTGAATCTTGCAGCTT
Found at i:85200624 original size:108 final size:106
Alignment explanation
Indices: 85200490--85200861 Score: 383
Period size: 108 Copynumber: 3.4 Consensus size: 106
85200480 AGATCGCAAC
*
85200490 CTTATCGGCTCGTCGATTTAAGATCGCAATCTTATACTTACAAGATATTTTGAATCTTGCAGCTT
1 CTTA-CGGCTCGTCGATTTAAGATCGCAACCTTATACTTACAAGAT-TTTTGAATCTTGCAGCTT
* * *
85200555 GTTGATTTAAAATCGAAGCCTTATACTTACAAGATTTTTTGTAT
64 -TTGATTTAAAATCGCAGCCTTATACTTACAAGATTTTCTGAAT
* * *
85200599 CTTACGGCTCGTCAATTTAATATCGCAACCTTATACTTATAAGATTTTTTGAATCTTGCAGCTCT
1 CTTACGGCTCGTCGATTTAAGATCGCAACCTTATACTTACAAGA-TTTTTGAATCTTGCAGCT-T
* * * *
85200664 CTGATTTAATATTGCAGCCTTATACTTAAAAGATTTTCTGAAT
64 TTGATTTAAAATCGCAGCCTTATACTTACAAGATTTTCTGAAT
** * * *
85200707 CTTGTGG-T-TTACTGATTTAATATCGCAACCTTATACTTACAAGATTTTTCATATCTTGCCA-C
1 CTTACGGCTCGT-C-GATTTAAGATCGCAACCTTATACTTACAAGATTTTTGA-ATCTTG-CAGC
** * * * * *
85200769 TTATCAATTTAAGATCGCATCTTTATACTTACAAGATTATCAGAAT
62 TT-TTGATTTAAAATCGCAGCCTTATACTTACAAGATTTTCTGAAT
* * *
85200815 CTTGCAGCTCGTCGATGTAAGATCGCAGA-CTTATACTTACAAGATTT
1 CTTACGGCTCGTCGATTTAAGATCGCA-ACCTTATACTTACAAGATTT
85200862 CGAAAATCTT
Statistics
Matches: 221, Mismatches: 32, Indels: 21
0.81 0.12 0.08
Matches are distributed among these distances:
106 1 0.00
107 9 0.04
108 199 0.90
109 11 0.05
110 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (106 bp):
CTTACGGCTCGTCGATTTAAGATCGCAACCTTATACTTACAAGATTTTTGAATCTTGCAGCTTTT
GATTTAAAATCGCAGCCTTATACTTACAAGATTTTCTGAAT
Found at i:85200778 original size:162 final size:161
Alignment explanation
Indices: 85200497--85200861 Score: 430
Period size: 162 Copynumber: 2.3 Consensus size: 161
85200487 AACCTTATCG
* **
85200497 GCTCGTCGATTTAAGATCGCA-ATCTTATACTTACAAGATATTTTGAATCTTGCAGCTTGTTGAT
1 GCTCGTCGATGTAAGATCGCAGA-CTTATACTTACAAGAT-TTTTGAATCTTGCAGCTTACTGAT
** ** * *
85200561 TTAAAATCGAAGCCTTATACTTACAAGATTTTTTGTATCTTACGGCTCGTCAATTTAATATCGCA
64 TTAAAATCGAAGCCTTATACTTACAAGATTTTTCATATCTTACCACTCATCAATTTAAGATCGCA
* * **
85200626 ACCTTATACTTATAAGATTTTTTGAATCTTGCA
129 ACCTTATACTTACAAGATTATCAGAATCTTGCA
* * * * * ** *
85200659 GCTC-TCTGATTTAATATTGCAGCCTTATACTTAAAAGATTTTCTGAATCTTGTGGTTTACTGAT
1 GCTCGTC-GATGTAAGATCGCAGACTTATACTTACAAGATTTT-TGAATCTTGCAGCTTACTGAT
* * *
85200723 TTAATATCGCAA-CCTTATACTTACAAGATTTTTCATATCTTGCCACTTATCAATTTAAGATCGC
64 TTAAAATCG-AAGCCTTATACTTACAAGATTTTTCATATCTTACCACTCATCAATTTAAGATCGC
* *
85200787 ATCTTTATACTTACAAGATTATCAGAATCTTGCA
128 AACCTTATACTTACAAGATTATCAGAATCTTGCA
85200821 GCTCGTCGATGTAAGATCGCAGACTTATACTTACAAGATTT
1 GCTCGTCGATGTAAGATCGCAGACTTATACTTACAAGATTT
85200862 CGAAAATCTT
Statistics
Matches: 169, Mismatches: 29, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
161 5 0.03
162 160 0.95
163 4 0.02
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.39
Consensus pattern (161 bp):
GCTCGTCGATGTAAGATCGCAGACTTATACTTACAAGATTTTTGAATCTTGCAGCTTACTGATTT
AAAATCGAAGCCTTATACTTACAAGATTTTTCATATCTTACCACTCATCAATTTAAGATCGCAAC
CTTATACTTACAAGATTATCAGAATCTTGCA
Found at i:85201882 original size:67 final size:67
Alignment explanation
Indices: 85201786--85201922 Score: 231
Period size: 67 Copynumber: 2.0 Consensus size: 67
85201776 CAAATACGAG
*
85201786 TAATCCTAAGAGAGGGGAAGGGGGAAAGGAACCATCAACAGAAGTGTAGACAAAATAAATGGTGT
1 TAATCCTAAGAGAGGGGAAGGGGGAAAGGAACCATCAACAGAAGTGTAGACAAAAAAAATGGTGT
85201851 CA
66 CA
* *
85201853 TAATCCTAAGAGAATGGGATGGGGG-AAGGAACCATCAACAGAAGTGTAGACAAAAAAAATGGTG
1 TAATCCTAAGAG-AGGGGAAGGGGGAAAGGAACCATCAACAGAAGTGTAGACAAAAAAAATGGTG
85201917 TCA
65 TCA
85201920 TAA
1 TAA
85201923 CAATGGTCAA
Statistics
Matches: 66, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
67 56 0.85
68 10 0.15
ACGTcount: A:0.44, C:0.12, G:0.28, T:0.16
Consensus pattern (67 bp):
TAATCCTAAGAGAGGGGAAGGGGGAAAGGAACCATCAACAGAAGTGTAGACAAAAAAAATGGTGT
CA
Found at i:85202208 original size:52 final size:48
Alignment explanation
Indices: 85202136--85202278 Score: 155
Period size: 50 Copynumber: 2.9 Consensus size: 48
85202126 TTAAATATAA
*
85202136 TATAA-TATTTTTAAAAAATATTTATGTAGTTTTATATATTTTAAAAGTT
1 TATAATTATTTTTTAAAAATATTTATGTA-TTTTATATATTTTAAAA-TT
* *
85202185 TATAATTTATTTTTTTAATAATATTT-TTTATTTTTATATGATTTTTAAAATT
1 TATAA-TTA-TTTTTTAAAAATATTTATGTA-TTTTATAT-A-TTTTAAAATT
* * *
85202237 TTTTATTATATTTTAAAAATATTTATGTATTTTATATATTTT
1 TATAATTATTTTTTAAAAATATTTATGTATTTTATATATTTT
85202279 TTTGAATTTT
Statistics
Matches: 79, Mismatches: 9, Indels: 13
0.78 0.09 0.13
Matches are distributed among these distances:
48 4 0.05
49 6 0.08
50 22 0.28
51 19 0.24
52 20 0.25
53 8 0.10
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (48 bp):
TATAATTATTTTTTAAAAATATTTATGTATTTTATATATTTTAAAATT
Found at i:85202237 original size:20 final size:20
Alignment explanation
Indices: 85202214--85202288 Score: 68
Period size: 20 Copynumber: 3.9 Consensus size: 20
85202204 AATATTTTTT
85202214 ATTTTTATATGAT-TTTTAAA
1 ATTTTT-TATGATATTTTAAA
*
85202234 ATTTTTTATTATATTTTAAA
1 ATTTTTTATGATATTTTAAA
* * *
85202254 AATATTTATG-TATTTTATAT
1 ATTTTTTATGATATTTTA-AA
85202274 ATTTTTT-TGA-ATTTT
1 ATTTTTTATGATATTTT
85202289 TTAGGTTTAG
Statistics
Matches: 45, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
19 19 0.42
20 26 0.58
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (20 bp):
ATTTTTTATGATATTTTAAA
Found at i:85202239 original size:21 final size:21
Alignment explanation
Indices: 85202215--85202256 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
85202205 ATATTTTTTA
*
85202215 TTTTTA-TATGATTTTTAAAAT
1 TTTTTATTAT-ATTTTAAAAAT
85202236 TTTTTATTATATTTTAAAAAT
1 TTTTTATTATATTTTAAAAAT
85202257 ATTTATGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (21 bp):
TTTTTATTATATTTTAAAAAT
Found at i:85202290 original size:51 final size:48
Alignment explanation
Indices: 85202143--85202290 Score: 131
Period size: 52 Copynumber: 2.9 Consensus size: 48
85202133 TAATATAATA
* *
85202143 TTTTTAAAAAATATTTATGTAGTTTTATATA-TTTTAAAAGTTTATAATTTAT
1 TTTTTTAAAAATATTTATGTA-TTTTATATATTTTTTAAA-TTT-T--TTTAT
* * *
85202195 TTTTTTAATAATATTT-TTTATTTT-TATATGATTTTTAAAATTTTTTAT
1 TTTTTTAAAAATATTTATGTATTTTATATAT--TTTTTAAATTTTTTTAT
*
85202243 TATATTTTAAAAATATTTATGTATTTTATATATTTTTTTGAATTTTTT
1 T-T-TTTTAAAAATATTTATGTATTTTATATA-TTTTTTAAATTTTTT
85202291 AGGTTTAGGA
Statistics
Matches: 79, Mismatches: 9, Indels: 17
0.75 0.09 0.16
Matches are distributed among these distances:
48 6 0.08
49 5 0.06
50 18 0.23
51 24 0.30
52 25 0.32
53 1 0.01
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (48 bp):
TTTTTTAAAAATATTTATGTATTTTATATATTTTTTAAATTTTTTTAT
Found at i:85206960 original size:21 final size:21
Alignment explanation
Indices: 85206920--85206977 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
85206910 AAATTATGAA
* *
85206920 AAAACAATAAGAAAATAACAAG
1 AAAACAGTAA-AAAAAAACAAG
85206942 AAAACAGTAAAAAAAAACAAG
1 AAAACAGTAAAAAAAAACAAG
* *
85206963 AAAATAGTAGAAAAA
1 AAAACAGTAAAAAAA
85206978 GTAGTTTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
21 23 0.72
22 9 0.28
ACGTcount: A:0.74, C:0.07, G:0.10, T:0.09
Consensus pattern (21 bp):
AAAACAGTAAAAAAAAACAAG
Found at i:85209957 original size:40 final size:40
Alignment explanation
Indices: 85209817--85210046 Score: 259
Period size: 40 Copynumber: 5.8 Consensus size: 40
85209807 TGGATAATAA
* * * * **
85209817 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* * * * **
85209857 CCGGGC-AAGTCCCGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
85209896 CCGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
85209935 CCAGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* * *
85209975 CCGGGCTAAGTCCCGAAGGAAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
85210015 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
85210047 AGCTATATCC
Statistics
Matches: 171, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 71 0.42
40 98 0.57
41 2 0.01
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:85214580 original size:27 final size:27
Alignment explanation
Indices: 85214550--85214727 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
85214540 ATATTGAGTC
* * * *
85214550 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
85214577 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
85214604 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
85214632 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
85214659 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
85214686 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
85214713 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
85214728 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:85214689 original size:82 final size:81
Alignment explanation
Indices: 85214571--85214726 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
85214561 TGCTATATAA
* *
85214571 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
85214636 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
85214653 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
85214717 CACTTAGTGC
65 CACTTAGTGC
85214727 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:85224114 original size:200 final size:200
Alignment explanation
Indices: 85223764--85224273 Score: 731
Period size: 200 Copynumber: 2.5 Consensus size: 200
85223754 TTGAATGTTA
* * * *
85223764 TTTGGTAAGATTTGGTGTATTTTATGTAGGTATAATGGATGGTAATTGCATGGCTTGTAAGA-TA
1 TTTGGCAAGATTTGGTGTATTTTAGGTAGGTATAATGGATGGTAATTGCATGGATTTTAA-ACTA
* * * *
85223828 AGAAATTATAGGTAAAATGACTTGGTTTTGAAGGCATGTTTAGGTGCACACTGCTTGCCATACGG
65 AGAAATTATAGGTAAAATGACTTGGTTTTGAAGGCATGTTTAGGTGCACACGGCCTGCCACACAG
** **
85223893 TCGTGTGTCACACACAGTTGCATGACAC-AGCATATTGGCTAGACACCT-AGGTTTAATGT-TAT
130 TCGCATGTCACACACAGTTGCATGACACGA-CATATTGGCTAGACA-CTGAGGTGGAATGTCT-T
85223955 TTGGTATGT
192 TTGGTATGT
*
85223964 TTTGGCAAGATTTGGTGTATTTTAGGTAGGTATAATGGATGGTAATTGCATGGATTTTAAACTAC
1 TTTGGCAAGATTTGGTGTATTTTAGGTAGGTATAATGGATGGTAATTGCATGGATTTTAAACTAA
* * *
85224029 GAAATTATAGGTAAAATGACTTGGTTTTAAAGGCATGTTTAGGTGCGCACGGCCTGCCACATAGT
66 GAAATTATAGGTAAAATGACTTGGTTTTGAAGGCATGTTTAGGTGCACACGGCCTGCCACACAGT
* * * *
85224094 CGCATGTCACATATAGTTGCATGACACGACATATTGGTTAGACAGTGAGGTGGAATGTCTTTTGG
131 CGCATGTCACACACAGTTGCATGACACGACATATTGGCTAGACACTGAGGTGGAATGTCTTTTGG
85224159 TATGT
196 TATGT
* * * *
85224164 TTTGGCTATATTTGGTGTATTTTAGGTAGGTATAATGGATAGTAATTGCATGGATTTTAATCTAA
1 TTTGGCAAGATTTGGTGTATTTTAGGTAGGTATAATGGATGGTAATTGCATGGATTTTAAACTAA
*
85224229 GAAATTATAGGTAAAATGAATTGGTTTTGAAGGCATGTTTAGGTG
66 GAAATTATAGGTAAAATGACTTGGTTTTGAAGGCATGTTTAGGTG
85224274 TACATGTTCA
Statistics
Matches: 279, Mismatches: 27, Indels: 8
0.89 0.09 0.03
Matches are distributed among these distances:
199 2 0.01
200 275 0.99
201 2 0.01
ACGTcount: A:0.28, C:0.10, G:0.26, T:0.36
Consensus pattern (200 bp):
TTTGGCAAGATTTGGTGTATTTTAGGTAGGTATAATGGATGGTAATTGCATGGATTTTAAACTAA
GAAATTATAGGTAAAATGACTTGGTTTTGAAGGCATGTTTAGGTGCACACGGCCTGCCACACAGT
CGCATGTCACACACAGTTGCATGACACGACATATTGGCTAGACACTGAGGTGGAATGTCTTTTGG
TATGT
Found at i:85228672 original size:14 final size:14
Alignment explanation
Indices: 85228650--85228703 Score: 60
Period size: 14 Copynumber: 4.0 Consensus size: 14
85228640 GCATATAGAA
*
85228650 CTTGCAAAACATAG
1 CTTGTAAAACATAG
85228664 CTTGTAAAACTATA-
1 CTTGTAAAAC-ATAG
*
85228678 CTTTTAAAACAT-G
1 CTTGTAAAACATAG
85228691 CTTG-AAAACATAG
1 CTTGTAAAACATAG
85228704 GCTCACATAG
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
12 7 0.21
13 6 0.18
14 18 0.53
15 3 0.09
ACGTcount: A:0.43, C:0.17, G:0.11, T:0.30
Consensus pattern (14 bp):
CTTGTAAAACATAG
Found at i:85229343 original size:27 final size:26
Alignment explanation
Indices: 85229293--85229401 Score: 101
Period size: 27 Copynumber: 4.1 Consensus size: 26
85229283 TCGACTTTTG
* **
85229293 ACTAGTGAACACTAGTTCGTAACTCA
1 ACTAGTGAACACCAGTTCACAACTCA
*
85229319 ATTAGTGAACCACCAGTTCACAACTCA
1 ACTAGTGAA-CACCAGTTCACAACTCA
* * * *
85229346 ACTGGCGAACACTAATTCACAACTCA
1 ACTAGTGAACACCAGTTCACAACTCA
* * *
85229372 ACTAATCAAACCCCAGTTCACAACTCA
1 ACTAGT-GAACACCAGTTCACAACTCA
85229399 ACT
1 ACT
85229402 GTCGAGCACT
Statistics
Matches: 65, Mismatches: 16, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
26 26 0.40
27 39 0.60
ACGTcount: A:0.38, C:0.30, G:0.10, T:0.22
Consensus pattern (26 bp):
ACTAGTGAACACCAGTTCACAACTCA
Found at i:85236335 original size:14 final size:14
Alignment explanation
Indices: 85236318--85236345 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
85236308 ATAAACATTT
85236318 TAAATTAAACTAAA
1 TAAATTAAACTAAA
85236332 TAAATTAAACTAAA
1 TAAATTAAACTAAA
85236346 AAAACATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (14 bp):
TAAATTAAACTAAA
Found at i:85244745 original size:37 final size:36
Alignment explanation
Indices: 85244695--85244766 Score: 108
Period size: 37 Copynumber: 2.0 Consensus size: 36
85244685 CCATGCGCCG
*
85244695 CTTCCCACTTTATTTTTTACACTCAATCTCTTTCCNA
1 CTTCCCACTTTATTTTTAACACTCAATCTCTTTCC-A
**
85244732 CTTCCCACTTTATTTTTAATGCTCAATCTCTTTCC
1 CTTCCCACTTTATTTTTAACACTCAATCTCTTTCC
85244767 CTTAGCGTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.18, C:0.32, G:0.01, T:0.47
Consensus pattern (36 bp):
CTTCCCACTTTATTTTTAACACTCAATCTCTTTCCA
Found at i:85252553 original size:24 final size:24
Alignment explanation
Indices: 85252522--85252569 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
85252512 AAAGAAAAGA
85252522 AAGATTAAACCTAAATCAAAGTGG
1 AAGATTAAACCTAAATCAAAGTGG
85252546 AAGATTAAACCTAAATCAAAGTGG
1 AAGATTAAACCTAAATCAAAGTGG
85252570 CTGTCACCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.12, G:0.17, T:0.21
Consensus pattern (24 bp):
AAGATTAAACCTAAATCAAAGTGG
Found at i:85259112 original size:13 final size:13
Alignment explanation
Indices: 85259094--85259119 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
85259084 TTTTGGCTAG
85259094 GAAGAAAGAAAGA
1 GAAGAAAGAAAGA
85259107 GAAGAAAGAAAGA
1 GAAGAAAGAAAGA
85259120 AGAGAAGAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (13 bp):
GAAGAAAGAAAGA
Found at i:85259124 original size:16 final size:16
Alignment explanation
Indices: 85259095--85259160 Score: 64
Period size: 19 Copynumber: 3.9 Consensus size: 16
85259085 TTTGGCTAGG
85259095 AAGAAAGAAAGAGAAGA
1 AAGAAAG-AAGAGAAGA
85259112 AAGAAAGAAGAGAAGAA
1 AAGAAAGAAGAGAAG-A
*
85259129 TAAGGAAAGAATAGAAG-
1 -AA-GAAAGAAGAGAAGA
85259146 AAG-AAGAAGGAGAAG
1 AAGAAAGAA-GAGAAG
85259161 GAGGCGACAC
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
14 5 0.12
15 6 0.14
16 10 0.23
17 8 0.19
18 2 0.05
19 12 0.28
ACGTcount: A:0.65, C:0.00, G:0.32, T:0.03
Consensus pattern (16 bp):
AAGAAAGAAGAGAAGA
Found at i:85259136 original size:19 final size:17
Alignment explanation
Indices: 85259095--85259153 Score: 66
Period size: 19 Copynumber: 3.3 Consensus size: 17
85259085 TTTGGCTAGG
85259095 AAGAAAGAAAGAGAAG-A
1 AAGAAAG-AAGAGAAGAA
85259112 AAGAAAGAAGAGAAGAA
1 AAGAAAGAAGAGAAGAA
*
85259129 TAAGGAAAGAATAGAAGAA
1 -AA-GAAAGAAGAGAAGAA
85259148 GAAGAA
1 -AAGAA
85259154 GGAGAAGGAG
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
16 8 0.22
17 8 0.22
18 5 0.14
19 16 0.43
ACGTcount: A:0.68, C:0.00, G:0.29, T:0.03
Consensus pattern (17 bp):
AAGAAAGAAGAGAAGAA
Found at i:85259205 original size:14 final size:14
Alignment explanation
Indices: 85259180--85259217 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
85259170 CTGGTGAGGG
85259180 AAGAAAAA-AGAAA
1 AAGAAAAAGAGAAA
85259193 AAGAAAAAGAGAAA
1 AAGAAAAAGAGAAA
* *
85259207 GAGAAGAAGAG
1 AAGAAAAAGAG
85259218 GGAGGGAAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 8 0.36
14 14 0.64
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (14 bp):
AAGAAAAAGAGAAA
Found at i:85259569 original size:17 final size:16
Alignment explanation
Indices: 85259546--85259587 Score: 75
Period size: 17 Copynumber: 2.6 Consensus size: 16
85259536 TATCTTAATG
85259546 AAAAAATAAAATACAA
1 AAAAAATAAAATACAA
85259562 AAAGAAATAAAATACAA
1 AAA-AAATAAAATACAA
85259579 AAAAAATAA
1 AAAAAATAA
85259588 TTTTTTAGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 9 0.36
17 16 0.64
ACGTcount: A:0.81, C:0.05, G:0.02, T:0.12
Consensus pattern (16 bp):
AAAAAATAAAATACAA
Found at i:85259882 original size:41 final size:40
Alignment explanation
Indices: 85259837--85259930 Score: 109
Period size: 40 Copynumber: 2.3 Consensus size: 40
85259827 AGAATAATAA
* * *
85259837 AATATAAACAAATAGCCAAAATCAGA-ATTTTTTACTAAATT
1 AATATAAA-AAATA-CCAAAATAAGACATTTGTTACTAAAAT
* * *
85259878 AATATAAAAAACACTAAAATAATACATTTGTTACTAAAAT
1 AATATAAAAAATACCAAAATAAGACATTTGTTACTAAAAT
85259918 AATATAAAAAATA
1 AATATAAAAAATA
85259931 AAATACGAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
39 8 0.18
40 29 0.64
41 8 0.18
ACGTcount: A:0.57, C:0.10, G:0.03, T:0.30
Consensus pattern (40 bp):
AATATAAAAAATACCAAAATAAGACATTTGTTACTAAAAT
Found at i:85260266 original size:293 final size:285
Alignment explanation
Indices: 85259621--85260437 Score: 1180
Period size: 293 Copynumber: 2.8 Consensus size: 285
85259611 CGAGTTTTTT
* * * * *
85259621 ACTAAAAGAATAT-AAAAAGAAAATACAAAAATAATATATTTTA-AAATATAAAATTCAAAAATA
1 ACTAAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTAGAAA-ATAAAA-TC--AGA-A
* *
85259684 AAAAATACAAATAAAGGGCCAAAATCAGTG-TTTTTTACTAAATTAATATAAAAAAAACACTAAA
61 AAAAATACAAACAAA-AGCCAAAATCAG-GATTTTTTACTAAATTAATAT--AAAAAACACTAAA
* *
85259748 ATAATACATTTGAAACATTATGTACTAAAAT-A-ATAAAAAATAAAATGCGAAAATAGTATATTT
122 ATAATACATTTGAAACATTATGTATTAAAATAATATAAAAAATAAAATACGAAAATAGTATATTT
*
85259811 TAAAAAATAAAAT-TCGAGAATAATAAAATATAAACAAATAGCCAAAA-TCAGAATTTTTTACTA
187 TAAAAAATAAAATCT-GAGAATAA-AAAATACAAACAAATAGCCAAAATTCAGAATTTTTTACTA
* * **
85259874 AATTAATATAAAAAACACTAAAATAATACATTTGTT
250 AATTAATATAAAAAAAACTAAAACAATACATTTGAA
*
85259910 ACTAAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTAGAAAATAAAATCCGAAAAAAA
1 ACTAAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTAGAAAATAAAATCAGAAAAAAA
*
85259975 TACAAACAAAATGCCAAAATCAGGATTTTTTACTAAATTAATATAAAAAATACTAAAATAATACA
66 TACAAACAAAA-GCCAAAATCAGGATTTTTTACTAAATTAATATAAAAAACACTAAAATAATACA
*
85260040 TTTGAAACATTATGTATTAAAATAATATAAAAAAATAAAATATGAAAATAGTATATTTTAAAAAA
130 TTTGAAACATTATGTATTAAAATAATAT-AAAAAATAAAATACGAAAATAGTATATTTTAAAAAA
* * * **
85260105 TAAAATCTGAGAATAAAAATTACAAATAAATGGCCAAAATTCAGGGTTTTTTTACTAAATTAATA
194 TAAAATCTGAGAATAAAAAATACAAACAAATAGCCAAAATTCA-GAATTTTTTACTAAATT-A-A
*
85260170 TATATAAAAAAACTAATACAATACATTTGAA
256 TATA-AAAAAAACTAAAACAATACATTTGAA
*
85260201 ACTAAAATAATATAAAAAAAATAAAATACGAAAATAGTATATTTTAGAAAATAAAATCTGAAAAA
1 ACTAAAATAATAT--AAAAAATAAAATACGAAAATAGTATATTTTAGAAAATAAAATCAGAAAAA
85260266 AATACAAACAAAGAGCCAAAATCAGGATTTTTTACTAAATTAATATAAAAAACACTAAAATAATA
64 AATACAAACAAA-AGCCAAAATCAGGATTTTTTACTAAATTAATATAAAAAACACTAAAATAATA
85260331 CATTTGAAACATTATGTATTAAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTAAAAA
128 CATTTGAAACATTATGTATTAAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTAAAAA
85260396 ATAAAATCTGAGAATAAAAAAATACAAACAAATAGCCAAAAT
193 ATAAAATCTGAGAAT-AAAAAATACAAACAAATAGCCAAAAT
85260438 CACCGAACAA
Statistics
Matches: 482, Mismatches: 29, Indels: 30
0.89 0.05 0.06
Matches are distributed among these distances:
284 42 0.09
285 2 0.00
286 66 0.14
287 52 0.11
288 16 0.03
289 15 0.03
290 38 0.08
291 37 0.08
292 49 0.10
293 164 0.34
294 1 0.00
ACGTcount: A:0.58, C:0.08, G:0.06, T:0.28
Consensus pattern (285 bp):
ACTAAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTAGAAAATAAAATCAGAAAAAAA
TACAAACAAAAGCCAAAATCAGGATTTTTTACTAAATTAATATAAAAAACACTAAAATAATACAT
TTGAAACATTATGTATTAAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATA
AAATCTGAGAATAAAAAATACAAACAAATAGCCAAAATTCAGAATTTTTTACTAAATTAATATAA
AAAAAACTAAAACAATACATTTGAA
Found at i:85262528 original size:18 final size:18
Alignment explanation
Indices: 85262482--85262528 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
85262472 TGGCCGATAT
*
85262482 AGAGCCGGAGCCATAGCC
1 AGAGCCAGAGCCATAGCC
* *
85262500 AGATCCTGAGCC-TAAGCC
1 AGAGCCAGAGCCAT-AGCC
85262518 AGAGCCAGAGC
1 AGAGCCAGAGC
85262529 TACAACCGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
17 1 0.04
18 23 0.96
ACGTcount: A:0.30, C:0.32, G:0.30, T:0.09
Consensus pattern (18 bp):
AGAGCCAGAGCCATAGCC
Found at i:85262734 original size:33 final size:33
Alignment explanation
Indices: 85262697--85262785 Score: 115
Period size: 33 Copynumber: 2.7 Consensus size: 33
85262687 TCTCCCAGCT
* **
85262697 CGTATCCACCGCAGTACTCCACTAGCCCCGGCC
1 CGTATCCACCGCAGTACTCCACTACCCCCAACC
* **
85262730 CGTATCCACCACAGTACAGCACTACCCCCAACC
1 CGTATCCACCGCAGTACTCCACTACCCCCAACC
*
85262763 CGTATCTACCGCAGTACTCCACT
1 CGTATCCACCGCAGTACTCCACT
85262786 CCTCTTGAGT
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.24, C:0.46, G:0.13, T:0.17
Consensus pattern (33 bp):
CGTATCCACCGCAGTACTCCACTACCCCCAACC
Found at i:85263217 original size:26 final size:26
Alignment explanation
Indices: 85263181--85263264 Score: 91
Period size: 26 Copynumber: 3.1 Consensus size: 26
85263171 GGAACAAACT
85263181 TTAAATACATTACAACATTAATCTAA
1 TTAAATACATTACAACATTAATCTAA
*
85263207 TTAAATACATTA-ATCTAATTGGAA-CATTAA
1 TTAAATACATTACAAC--ATT--AATC--TAA
85263237 TTAAATACATTACAACATTAATCTAA
1 TTAAATACATTACAACATTAATCTAA
85263263 TT
1 TT
85263265 GGAACAAACT
Statistics
Matches: 48, Mismatches: 2, Indels: 16
0.73 0.03 0.24
Matches are distributed among these distances:
25 2 0.04
26 17 0.35
27 5 0.10
28 2 0.04
29 5 0.10
30 15 0.31
31 2 0.04
ACGTcount: A:0.48, C:0.13, G:0.02, T:0.37
Consensus pattern (26 bp):
TTAAATACATTACAACATTAATCTAA
Found at i:85263270 original size:17 final size:17
Alignment explanation
Indices: 85263189--85263270 Score: 65
Period size: 17 Copynumber: 4.5 Consensus size: 17
85263179 CTTTAAATAC
*
85263189 ATTACAACATTAATCTA
1 ATTAGAACATTAATCTA
*
85263206 ATTAAATACATTAATCTA
1 ATTAGA-ACATTAATCTA
* *
85263224 ATTGGAACATTAATTAAATA
1 ATTAGAACATTAA-T--CTA
*
85263244 CATTACAACATTAATCTA
1 -ATTAGAACATTAATCTA
*
85263262 ATTGGAACA
1 ATTAGAACA
85263271 AACTTTGTAA
Statistics
Matches: 51, Mismatches: 9, Indels: 10
0.73 0.13 0.14
Matches are distributed among these distances:
17 19 0.37
18 18 0.35
20 3 0.06
21 11 0.22
ACGTcount: A:0.48, C:0.13, G:0.05, T:0.34
Consensus pattern (17 bp):
ATTAGAACATTAATCTA
Found at i:85267056 original size:41 final size:40
Alignment explanation
Indices: 85266933--85267077 Score: 174
Period size: 41 Copynumber: 3.7 Consensus size: 40
85266923 AATATAAATC
* *
85266933 AACAATAATAATAACTAA-AATAATTAG-GATTTTTTACT
1 AACAATAATAATAACTAACAATAATAAGAGGTTTTTTACT
* * * *
85266971 AACAATAACAACCAAC-AATC-CTAATAATA-GTTTTTTACT
1 AACAATAATAA-TAACTAA-CAATAATAAGAGGTTTTTTACT
85267010 AACAATAATAATAACTAACAATAATAAGAAGGTTTTTTACT
1 AACAATAATAATAACTAACAATAATAAG-AGGTTTTTTACT
85267051 AACAATAATAATAACTAACAATAATAA
1 AACAATAATAATAACTAACAATAATAA
85267078 CTAACAACAA
Statistics
Matches: 89, Mismatches: 10, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
38 16 0.18
39 35 0.39
40 1 0.01
41 37 0.42
ACGTcount: A:0.52, C:0.12, G:0.04, T:0.31
Consensus pattern (40 bp):
AACAATAATAATAACTAACAATAATAAGAGGTTTTTTACT
Found at i:85267069 original size:16 final size:16
Alignment explanation
Indices: 85267048--85267119 Score: 69
Period size: 16 Copynumber: 4.5 Consensus size: 16
85267038 AAGGTTTTTT
85267048 ACTAACAATAATAATA
1 ACTAACAATAATAATA
85267064 ACTAACAATAATAACTA
1 ACTAACAATAATAA-TA
* *
85267081 AC-AACAAAAAACAATA
1 ACTAAC-AATAATAATA
*
85267097 A-TAATCAACAATAATA
1 ACTAA-CAATAATAATA
85267113 A-TAACAA
1 ACTAACAA
85267120 CAAAAACACA
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
15 3 0.06
16 34 0.71
17 11 0.23
ACGTcount: A:0.65, C:0.15, G:0.00, T:0.19
Consensus pattern (16 bp):
ACTAACAATAATAATA
Found at i:85267075 original size:13 final size:12
Alignment explanation
Indices: 85267057--85267119 Score: 76
Period size: 13 Copynumber: 5.2 Consensus size: 12
85267047 TACTAACAAT
85267057 AATAATAACTAAC
1 AATAATAA-TAAC
85267070 AATAATAACTAAC
1 AATAATAA-TAAC
*
85267083 AACAA-AA-AAC
1 AATAATAATAAC
85267093 AATAATAATCAAC
1 AATAATAAT-AAC
85267106 AATAATAATAAC
1 AATAATAATAAC
85267118 AA
1 AA
85267120 CAAAAACACA
Statistics
Matches: 45, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
10 7 0.16
11 2 0.04
12 7 0.16
13 29 0.64
ACGTcount: A:0.67, C:0.14, G:0.00, T:0.19
Consensus pattern (12 bp):
AATAATAATAAC
Found at i:85267107 original size:36 final size:38
Alignment explanation
Indices: 85267051--85267138 Score: 119
Period size: 36 Copynumber: 2.3 Consensus size: 38
85267041 GTTTTTTACT
85267051 AACAATAATAATAACTAACAATAATAACTAACAACAAAA
1 AACAATAATAATAACTAACAATAATAAC-AACAACAAAA
*
85267090 AACAATAATAAT--C-AACAATAATAATAACAACAAAA
1 AACAATAATAATAACTAACAATAATAACAACAACAAAA
*
85267125 ACACAATAACAATA
1 A-ACAATAATAATA
85267139 TAAAATCCAT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
35 11 0.24
36 21 0.47
37 1 0.02
39 12 0.27
ACGTcount: A:0.67, C:0.16, G:0.00, T:0.17
Consensus pattern (38 bp):
AACAATAATAATAACTAACAATAATAACAACAACAAAA
Found at i:85267212 original size:20 final size:20
Alignment explanation
Indices: 85267177--85267237 Score: 69
Period size: 20 Copynumber: 3.2 Consensus size: 20
85267167 ACATTTTCTT
*
85267177 TTCTTTTTTTTC-CTTCTCC
1 TTCTTTTTCTTCTCTTCTCC
85267196 TTCTTTTTCTTCTCTTCTCC
1 TTCTTTTTCTTCTCTTCTCC
85267216 TT-TTCTTTCTT-T-TTCT-C
1 TTCTT-TTTCTTCTCTTCTCC
85267233 TTCTT
1 TTCTT
85267238 CTCCTTGCTG
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
17 3 0.08
18 6 0.16
19 14 0.37
20 15 0.39
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (20 bp):
TTCTTTTTCTTCTCTTCTCC
Found at i:85267225 original size:26 final size:26
Alignment explanation
Indices: 85267171--85267243 Score: 80
Period size: 26 Copynumber: 2.9 Consensus size: 26
85267161 AATTATACAT
* *
85267171 TTTC-TTTTCTT-TTTTTTCCTTCTC
1 TTTCTTTTTCTTCTCTTCTCCTTCTC
* *
85267195 CTTCTTTTTCTTCTCTTCTCCTTTTC
1 TTTCTTTTTCTTCTCTTCTCCTTCTC
85267221 TTTCTTTTTC-TCTTCTTCTCCTT
1 TTTCTTTTTCTTC-TCTTCTCCTT
85267244 GCTGCTACTT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
24 3 0.07
25 9 0.22
26 29 0.71
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (26 bp):
TTTCTTTTTCTTCTCTTCTCCTTCTC
Found at i:85267405 original size:16 final size:17
Alignment explanation
Indices: 85267373--85267406 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
85267363 ATTTTTGTGT
*
85267373 TTTTTTTAGACATAAAA
1 TTTTTTTAGACAGAAAA
85267390 TTTTTTTAG-CAGAAAA
1 TTTTTTTAGACAGAAAA
85267406 T
1 T
85267407 GACAGAATGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.38, C:0.06, G:0.09, T:0.47
Consensus pattern (17 bp):
TTTTTTTAGACAGAAAA
Found at i:85268456 original size:50 final size:50
Alignment explanation
Indices: 85268381--85268481 Score: 175
Period size: 50 Copynumber: 2.0 Consensus size: 50
85268371 CATGATGGAG
* *
85268381 TGTGAAATTATTTATTATTTCTGTCACTATGTTAACCTACTAAATTTGAT
1 TGTGAAATTATTTATTATTACTGTCACTATGTTAACCTACTAAACTTGAT
*
85268431 TGTGAAATTATTTATTATTACTGTCATTATGTTAACCTACTAAACTTGAT
1 TGTGAAATTATTTATTATTACTGTCACTATGTTAACCTACTAAACTTGAT
85268481 T
1 T
85268482 TATTTAGTCA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.31, C:0.12, G:0.10, T:0.48
Consensus pattern (50 bp):
TGTGAAATTATTTATTATTACTGTCACTATGTTAACCTACTAAACTTGAT
Found at i:85278717 original size:26 final size:26
Alignment explanation
Indices: 85278688--85278739 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
85278678 ACCCTAAACA
*
85278688 TTGAACCTTGAATTGTGAACTCGAAC
1 TTGAACCTTGAACTGTGAACTCGAAC
*
85278714 TTGAACCTTGAACTGTGAATTCGAAC
1 TTGAACCTTGAACTGTGAACTCGAAC
85278740 CCAAACTCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (26 bp):
TTGAACCTTGAACTGTGAACTCGAAC
Found at i:85279262 original size:16 final size:17
Alignment explanation
Indices: 85279236--85279268 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
85279226 AGTCACCCGT
85279236 TCTTAAAGATAATCCAC
1 TCTTAAAGATAATCCAC
85279253 TCTT-AAGATAATCCAC
1 TCTTAAAGATAATCCAC
85279269 CTACTTGGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.39, C:0.24, G:0.06, T:0.30
Consensus pattern (17 bp):
TCTTAAAGATAATCCAC
Found at i:85280566 original size:58 final size:58
Alignment explanation
Indices: 85280476--85280591 Score: 223
Period size: 58 Copynumber: 2.0 Consensus size: 58
85280466 TAGGTTTGGT
85280476 TACAAGATGTCACATCATACTTACATGACTAACTTGAAGAATTTACAACTAAATTGTA
1 TACAAGATGTCACATCATACTTACATGACTAACTTGAAGAATTTACAACTAAATTGTA
*
85280534 TACAAGATGTCACATCATACTTACATGACTAACTTGAATAATTTACAACTAAATTGTA
1 TACAAGATGTCACATCATACTTACATGACTAACTTGAAGAATTTACAACTAAATTGTA
85280592 CGACTAACAT
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.32
Consensus pattern (58 bp):
TACAAGATGTCACATCATACTTACATGACTAACTTGAAGAATTTACAACTAAATTGTA
Found at i:85282537 original size:77 final size:77
Alignment explanation
Indices: 85282410--85282557 Score: 269
Period size: 77 Copynumber: 1.9 Consensus size: 77
85282400 TGGCTCTGAA
*
85282410 TCGGACGATTTATTCATTTAACTTGTTCCGTAGAGATCCCTAAGTTATGTTATTATCCCTGTTCA
1 TCGGACGATTTATTCATTTAACTTGTTCCGTAGAGATCCCTAAGTTATGTTATTATCCCTATTCA
85282475 AGACTAGTAATG
66 AGACTAGTAATG
* *
85282487 TCGGACGATTTATTCATTTAACTTGTTCCGTGGGGATCCCTAAGTTATGTTATTATCCCTATTCA
1 TCGGACGATTTATTCATTTAACTTGTTCCGTAGAGATCCCTAAGTTATGTTATTATCCCTATTCA
85282552 AGACTA
66 AGACTA
85282558 ATAACATCTA
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
77 68 1.00
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (77 bp):
TCGGACGATTTATTCATTTAACTTGTTCCGTAGAGATCCCTAAGTTATGTTATTATCCCTATTCA
AGACTAGTAATG
Found at i:85283000 original size:188 final size:188
Alignment explanation
Indices: 85282683--85283057 Score: 732
Period size: 188 Copynumber: 2.0 Consensus size: 188
85282673 CTTGTCACCC
85282683 TATGCCTAGGTGCGCAATCAACTCCACTTAATTATGAAAAATGTACTCTTAAACAAGGTTTATTC
1 TATGCCTAGGTGCGCAATCAACTCCACTTAATTATGAAAAATGTACTCTTAAACAAGGTTTATTC
85282748 CTCCTCTGAATAAGAGCTTACCTTGAATCGGTATCCTGGGATATCAAAACAAGAATTAAGAACAC
66 CTCCTCTGAATAAGAGCTTACCTTGAATCGGTATCCTGGGATATCAAAACAAGAATTAAGAACAC
85282813 ATAATTAAGAACAAGTCAAACATTTATCATACAATTCAGAAAATAATAACAAGATTCG
131 ATAATTAAGAACAAGTCAAACATTTATCATACAATTCAGAAAATAATAACAAGATTCG
85282871 TATGCCTAGGTGCGCAATCAACTCCACTTAATTATGAAAAATGTACTCTTAAACAAGGTTTATTC
1 TATGCCTAGGTGCGCAATCAACTCCACTTAATTATGAAAAATGTACTCTTAAACAAGGTTTATTC
85282936 CTCCTCTGAATAAGAGCTTACCTTGAATCGGTATCCTGGGATATCAAAACAAGAATTAAGAACAC
66 CTCCTCTGAATAAGAGCTTACCTTGAATCGGTATCCTGGGATATCAAAACAAGAATTAAGAACAC
* *
85283001 ATAATTAAGAACAAGTCAAATATTTATCATACAATTCGGAAAATAATAACAAGATTC
131 ATAATTAAGAACAAGTCAAACATTTATCATACAATTCAGAAAATAATAACAAGATTC
85283058 ATCTTAGGTT
Statistics
Matches: 185, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
188 185 1.00
ACGTcount: A:0.40, C:0.18, G:0.13, T:0.28
Consensus pattern (188 bp):
TATGCCTAGGTGCGCAATCAACTCCACTTAATTATGAAAAATGTACTCTTAAACAAGGTTTATTC
CTCCTCTGAATAAGAGCTTACCTTGAATCGGTATCCTGGGATATCAAAACAAGAATTAAGAACAC
ATAATTAAGAACAAGTCAAACATTTATCATACAATTCAGAAAATAATAACAAGATTCG
Found at i:85283656 original size:186 final size:186
Alignment explanation
Indices: 85283338--85283709 Score: 618
Period size: 186 Copynumber: 2.0 Consensus size: 186
85283328 AAATTAGCCT
* *
85283338 TTTCCGAATTGGACTCAACTTGGGCTCGGCAGGGACACGCCTGTGTGCGATTACTTCAGGCCGTG
1 TTTCCGAATTGGACTCAACTTGGGCTCGGCAGGGACACGCCCGTGTGCGATTACTTCAAGCCGTG
* *
85283403 CTCGAGCCTGCCAAATTGACACGGCCATGTGGTCTGCCCGTGTGAGGAGGTCCAAGCCGTGTTGA
66 CTCGAGCCTGCAAAATTGACACGGCCATGTGGTCTGCCCATGTGAGGAGGTCCAAGCCGTGTTGA
* *
85283468 TTTTGTACTTTGGCTCATTTTCTCCATTTTTGGCCCGTTTCTCGTTCCTTTCGCTC
131 TTTCGTACTTTGGCCCATTTTCTCCATTTTTGGCCCGTTTCTCGTTCCTTTCGCTC
*
85283524 TTTCCGAATTGGACTCAACTTGGGCTCGGTAGGGACACGCCCGTGTGCGATTACTTCAAGCCGTG
1 TTTCCGAATTGGACTCAACTTGGGCTCGGCAGGGACACGCCCGTGTGCGATTACTTCAAGCCGTG
* * * *
85283589 CTCGAGCCTGCAAAATTGACACGTCCGTGTGGTCTGCCCATGTGAGGAGGTCCAGGCCGTTTTGA
66 CTCGAGCCTGCAAAATTGACACGGCCATGTGGTCTGCCCATGTGAGGAGGTCCAAGCCGTGTTGA
* * *
85283654 TTTCGTACTTTGGCCCATTTTCTCCGTTTTTGGCTCGTTTCTCGTTCCTTTTGCTC
131 TTTCGTACTTTGGCCCATTTTCTCCATTTTTGGCCCGTTTCTCGTTCCTTTCGCTC
85283710 CCCTATGCTC
Statistics
Matches: 172, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
186 172 1.00
ACGTcount: A:0.14, C:0.27, G:0.26, T:0.33
Consensus pattern (186 bp):
TTTCCGAATTGGACTCAACTTGGGCTCGGCAGGGACACGCCCGTGTGCGATTACTTCAAGCCGTG
CTCGAGCCTGCAAAATTGACACGGCCATGTGGTCTGCCCATGTGAGGAGGTCCAAGCCGTGTTGA
TTTCGTACTTTGGCCCATTTTCTCCATTTTTGGCCCGTTTCTCGTTCCTTTCGCTC
Found at i:85287084 original size:120 final size:122
Alignment explanation
Indices: 85286922--85287145 Score: 317
Period size: 122 Copynumber: 1.9 Consensus size: 122
85286912 CACAATAACA
* * * * *
85286922 ATGAGAATGAGAATAGAAATGTAATGGGTTTGAGGTTTTCCTAAT-A-TCAATTTAATACGGAAT
1 ATGAGAATAAGAATAGAAATGTAATGGGTATGAGGTGTTCCTAATAACTCAATTTAACACGAAAT
* **
85286985 GTATGATAACTAACCTAGGAATGCAAATTAAATGATAGACATTGGCATGGTAATAGC
66 GTATGATAACTAACCTAAGAACACAAATTAAATGATAGACATTGGCATGGTAATAGC
* * * **
85287042 ATGAGAATAAGCATAGTAATGTCATGGGTATGAGGTGTTCCTAATAACTTGATTTAACACGAAAT
1 ATGAGAATAAGAATAGAAATGTAATGGGTATGAGGTGTTCCTAATAACTCAATTTAACACGAAAT
85287107 GTATGATAACTAACCTAAGAACACAAATTAAATGATAGA
66 GTATGATAACTAACCTAAGAACACAAATTAAATGATAGA
85287146 AAAATGAAAA
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
120 39 0.44
121 1 0.01
122 49 0.55
ACGTcount: A:0.41, C:0.10, G:0.20, T:0.29
Consensus pattern (122 bp):
ATGAGAATAAGAATAGAAATGTAATGGGTATGAGGTGTTCCTAATAACTCAATTTAACACGAAAT
GTATGATAACTAACCTAAGAACACAAATTAAATGATAGACATTGGCATGGTAATAGC
Found at i:85295644 original size:14 final size:14
Alignment explanation
Indices: 85295625--85295652 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
85295615 AAAATGTTTT
85295625 TTTAGTTTAATTTA
1 TTTAGTTTAATTTA
85295639 TTTAGTTTAATTTA
1 TTTAGTTTAATTTA
85295653 AAATGTTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.64
Consensus pattern (14 bp):
TTTAGTTTAATTTA
Found at i:85302654 original size:27 final size:26
Alignment explanation
Indices: 85302569--85302677 Score: 101
Period size: 27 Copynumber: 4.1 Consensus size: 26
85302559 AGTGCTCGAC
* * * *
85302569 AGTTGAGTTGTGAACTGGGGTTTGATT
1 AGTTGAGTTGTGAACTAGTG-TTCACT
* * *
85302596 AGTTGAGTTGTGAATTAGTGTTCGCC
1 AGTTGAGTTGTGAACTAGTGTTCACT
*
85302622 AGTTGAGTTGTGAACTGGTGGTTCACT
1 AGTTGAGTTGTGAACTAGT-GTTCACT
* **
85302649 AATTGAGTTACGAACTAGTGTTCACT
1 AGTTGAGTTGTGAACTAGTGTTCACT
85302675 AGT
1 AGT
85302678 CAAAAGTCGA
Statistics
Matches: 65, Mismatches: 16, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
26 28 0.43
27 37 0.57
ACGTcount: A:0.22, C:0.10, G:0.30, T:0.38
Consensus pattern (26 bp):
AGTTGAGTTGTGAACTAGTGTTCACT
Found at i:85302655 original size:53 final size:53
Alignment explanation
Indices: 85302557--85302671 Score: 142
Period size: 53 Copynumber: 2.2 Consensus size: 53
85302547 GTTTGGCAAG
* * * * **
85302557 CTAGTGCTCGACAGTTGAGTTGTGAACTGGGGTTTGATTAGTTGAGTTGTGAA
1 CTAGTGTTCGACAGTTGAGTTGTGAACTGGGGTTTCACTAATTGAGTTACGAA
* *
85302610 TTAGTGTTCGCCAGTTGAGTTGTGAACTGGTGG-TTCACTAATTGAGTTACGAA
1 CTAGTGTTCGACAGTTGAGTTGTGAACTGG-GGTTTCACTAATTGAGTTACGAA
85302663 CTAGTGTTC
1 CTAGTGTTC
85302672 ACTAGTCAAA
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
53 50 0.96
54 2 0.04
ACGTcount: A:0.21, C:0.12, G:0.30, T:0.37
Consensus pattern (53 bp):
CTAGTGTTCGACAGTTGAGTTGTGAACTGGGGTTTCACTAATTGAGTTACGAA
Found at i:85303320 original size:14 final size:14
Alignment explanation
Indices: 85303267--85303320 Score: 60
Period size: 14 Copynumber: 4.0 Consensus size: 14
85303257 CTATGTGAGC
85303267 CTATGTTTT-CAAG
1 CTATGTTTTACAAG
*
85303280 C-ATGTTTTAAAAG
1 CTATGTTTTACAAG
85303293 -TATAGTTTTACAAG
1 CTAT-GTTTTACAAG
*
85303307 CTATGTTTTGCAAG
1 CTATGTTTTACAAG
85303321 TTCTATATGC
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
12 7 0.21
13 6 0.18
14 18 0.53
15 3 0.09
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.43
Consensus pattern (14 bp):
CTATGTTTTACAAG
Found at i:85308062 original size:200 final size:200
Alignment explanation
Indices: 85307719--85308228 Score: 948
Period size: 200 Copynumber: 2.5 Consensus size: 200
85307709 TGAACATGTA
* ** * *
85307719 CACCTAAACATGCCTTCAAAACCAATTCATTTTACCTATAATTTCTTAGATTAAAATCCATGCAA
1 CACCTAAACATGCCTTCAAAACCAAGTCATTTTACCTATAATTTCTTATCTTACAAGCCATGCAA
*
85307784 TTACTATCCATTATACCTACCTAAAATACACCAAATCTTGCCAAAACATACCAAATAACATTAAA
66 TTACCATCCATTATACCTACCTAAAATACACCAAATCTTGCCAAAACATACCAAATAACATTAAA
85307849 CCTAGGTGTCTAGCCAATATGCTGTGTCATGCAACTGTGTGTGACACACGACCGTATGGCAAGCA
131 CCTAGGTGTCTAGCCAATATGCTGTGTCATGCAACTGTGTGTGACACACGACCGTATGGCAAGCA
85307914 GTGTG
196 GTGTG
85307919 CACCTAAACATGCCTTCAAAACCAAGTCATTTTACCTATAATTTCTTATCTTACAAGCCATGCAA
1 CACCTAAACATGCCTTCAAAACCAAGTCATTTTACCTATAATTTCTTATCTTACAAGCCATGCAA
85307984 TTACCATCCATTATACCTACCTAAAATACACCAAATCTTGCCAAAACATACCAAATAACATTAAA
66 TTACCATCCATTATACCTACCTAAAATACACCAAATCTTGCCAAAACATACCAAATAACATTAAA
85308049 CCTAGGTGTCTAGCCAATATGCTGTGTCATGCAACTGTGTGTGACACACGACCGTATGGCAAGCA
131 CCTAGGTGTCTAGCCAATATGCTGTGTCATGCAACTGTGTGTGACACACGACCGTATGGCAAGCA
85308114 GTGTG
196 GTGTG
85308119 CACCTAAACATGCCTTCAAAACCAAGTCATTTTACCTATAATTTCTTATCTTACAAGCCATGCAA
1 CACCTAAACATGCCTTCAAAACCAAGTCATTTTACCTATAATTTCTTATCTTACAAGCCATGCAA
* *
85308184 TTACCATCCATTATACCTACATAAAATACACCAAATCTTACCAAA
66 TTACCATCCATTATACCTACCTAAAATACACCAAATCTTGCCAAA
85308229 TAACATTCAA
Statistics
Matches: 302, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
200 302 1.00
ACGTcount: A:0.36, C:0.26, G:0.10, T:0.28
Consensus pattern (200 bp):
CACCTAAACATGCCTTCAAAACCAAGTCATTTTACCTATAATTTCTTATCTTACAAGCCATGCAA
TTACCATCCATTATACCTACCTAAAATACACCAAATCTTGCCAAAACATACCAAATAACATTAAA
CCTAGGTGTCTAGCCAATATGCTGTGTCATGCAACTGTGTGTGACACACGACCGTATGGCAAGCA
GTGTG
Found at i:85312291 original size:24 final size:24
Alignment explanation
Indices: 85312264--85312311 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
85312254 AGACAAGCTG
*
85312264 CCATATAGGTCGTGGACGAAGCCA
1 CCATATAGGTCGTAGACGAAGCCA
* * *
85312288 CCATGTAGGTTGTAGACTAAGCCA
1 CCATATAGGTCGTAGACGAAGCCA
85312312 TCAATATTCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.21
Consensus pattern (24 bp):
CCATATAGGTCGTAGACGAAGCCA
Found at i:85321290 original size:16 final size:16
Alignment explanation
Indices: 85321271--85321318 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
85321261 TAAGTATAAG
85321271 ATATTTAATATATATA
1 ATATTTAATATATATA
*
85321287 ATA--TATTAT-TATA
1 ATATTTAATATATATA
85321300 ATAATTTAATA-ATATA
1 AT-ATTTAATATATATA
85321316 ATA
1 ATA
85321319 AAGTATAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 9
0.70 0.05 0.24
Matches are distributed among these distances:
13 6 0.23
14 6 0.23
15 1 0.04
16 13 0.50
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
ATATTTAATATATATA
Found at i:85321309 original size:8 final size:8
Alignment explanation
Indices: 85321276--85321333 Score: 57
Period size: 8 Copynumber: 7.2 Consensus size: 8
85321266 ATAAGATATT
85321276 TAATATATA
1 TAATATA-A
*
85321285 TAATATAT
1 TAATATAA
*
85321293 TATTATAA
1 TAATATAA
*
85321301 TAATTTAA
1 TAATATAA
85321309 TAATATAA
1 TAATATAA
85321317 TAA-AGT-A
1 TAATA-TAA
85321324 TAATATAA
1 TAATATAA
85321332 TA
1 TA
85321334 GTTAAAATAA
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
7 6 0.15
8 27 0.68
9 7 0.17
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (8 bp):
TAATATAA
Found at i:85321358 original size:18 final size:17
Alignment explanation
Indices: 85321337--85321370 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
85321327 TATAATAGTT
85321337 AAAATAAATAAAAGAAAC
1 AAAATAAA-AAAAGAAAC
*
85321355 AAAATAGAAAAAGAAA
1 AAAATAAAAAAAGAAA
85321371 GAACAGAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.79, C:0.03, G:0.09, T:0.09
Consensus pattern (17 bp):
AAAATAAAAAAAGAAAC
Found at i:85322279 original size:6 final size:6
Alignment explanation
Indices: 85322268--85322301 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
85322258 TACCTGACTA
85322268 TTACTG TTACTG TTACTG TTACTG TTACTG TTAC
1 TTACTG TTACTG TTACTG TTACTG TTACTG TTAC
85322302 CCTTACGGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.50
Consensus pattern (6 bp):
TTACTG
Found at i:85322307 original size:18 final size:18
Alignment explanation
Indices: 85322268--85322307 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
85322258 TACCTGACTA
**
85322268 TTACTGTTACTGTTACTG
1 TTACTGTTACTGTTACCC
85322286 TTACTGTTACTGTTACCC
1 TTACTGTTACTGTTACCC
85322304 TTAC
1 TTAC
85322308 GGTGTATTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.17, C:0.23, G:0.12, T:0.47
Consensus pattern (18 bp):
TTACTGTTACTGTTACCC
Found at i:85323311 original size:22 final size:22
Alignment explanation
Indices: 85323283--85323329 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
85323273 GAAACGGGCA
*
85323283 TGTCATATCAGCCACACAGACG
1 TGTCATATAAGCCACACAGACG
* *
85323305 TGTCATATAAGCCATACAGGCG
1 TGTCATATAAGCCACACAGACG
85323327 TGT
1 TGT
85323330 GATACTATTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (22 bp):
TGTCATATAAGCCACACAGACG
Found at i:85326011 original size:3 final size:3
Alignment explanation
Indices: 85325992--85326039 Score: 60
Period size: 3 Copynumber: 16.0 Consensus size: 3
85325982 GCCACCCTCA
* * * *
85325992 CCG CTG CCG CTG CCG CCG CCG CCG CCT CCG CCA CCG CCG CCG CCG CCG
1 CCG CCG CCG CCG CCG CCG CCG CCG CCG CCG CCG CCG CCG CCG CCG CCG
85326040 TTGCCGCCAC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.02, C:0.62, G:0.29, T:0.06
Consensus pattern (3 bp):
CCG
Found at i:85331083 original size:25 final size:25
Alignment explanation
Indices: 85331055--85331104 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
85331045 ATTGGAGTTT
85331055 CTCAAGATTCAGCAACCACAAAAAG
1 CTCAAGATTCAGCAACCACAAAAAG
*
85331080 CTCAAGATTCAGCAACCATAAAAAG
1 CTCAAGATTCAGCAACCACAAAAAG
85331105 AAAGGTATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.48, C:0.26, G:0.12, T:0.14
Consensus pattern (25 bp):
CTCAAGATTCAGCAACCACAAAAAG
Found at i:85344093 original size:45 final size:45
Alignment explanation
Indices: 85344019--85344106 Score: 142
Period size: 45 Copynumber: 2.0 Consensus size: 45
85344009 GATTTCATGC
*
85344019 CCTTACCGTCCAGCCCAAATATACATTGGGTCTATTTTCCTTTCT
1 CCTTACCGTCCAGCCCAAATAAACATTGGGTCTATTTTCCTTTCT
*
85344064 CCTTGCCGTCCAGCCCAAATAGAAC-TTGGGTCTATTTTCCTTT
1 CCTTACCGTCCAGCCCAAATA-AACATTGGGTCTATTTTCCTTT
85344107 TAAACCCTCT
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
45 38 0.95
46 2 0.05
ACGTcount: A:0.19, C:0.31, G:0.14, T:0.36
Consensus pattern (45 bp):
CCTTACCGTCCAGCCCAAATAAACATTGGGTCTATTTTCCTTTCT
Found at i:85348876 original size:70 final size:70
Alignment explanation
Indices: 85348772--85348979 Score: 321
Period size: 70 Copynumber: 3.0 Consensus size: 70
85348762 CAATGACTTC
* *
85348772 TTATCTTTCAATTGGCACAA-TAGATTCTAGATTTTGTAGCTATCAACAAAATGGAATCCGTTTC
1 TTATCTTTCCATTGACACAATTAGATTCTAGATTTTGTAGCTATCAACAAAATGGAATCCGTTTC
85348836 TTTGT
66 TTTGT
*
85348841 TTATCTTTCCATTGACACAATTAGATTCTAGATTTTGTAGCTATCGACAAAATGGAATCCGTTTC
1 TTATCTTTCCATTGACACAATTAGATTCTAGATTTTGTAGCTATCAACAAAATGGAATCCGTTTC
85348906 TTTGT
66 TTTGT
* * * * *
85348911 TTATCTTTCCATTGCCGCAATTAGATTCTAG-TTTTGTAGCTATTAACAAAAATGGAAGCCATTT
1 TTATCTTTCCATTGACACAATTAGATTCTAGATTTTGTAGCTATCAAC-AAAATGGAATCCGTTT
85348975 CTTTG
65 CTTTG
85348980 AACCAGTTTA
Statistics
Matches: 128, Mismatches: 9, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
69 32 0.25
70 96 0.75
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (70 bp):
TTATCTTTCCATTGACACAATTAGATTCTAGATTTTGTAGCTATCAACAAAATGGAATCCGTTTC
TTTGT
Found at i:85360692 original size:114 final size:114
Alignment explanation
Indices: 85360492--85360835 Score: 670
Period size: 114 Copynumber: 3.0 Consensus size: 114
85360482 CATCTTGTGA
* *
85360492 CTGATTCTTTAAGGAAGATTTGTTTTGTTTATACTTTTTCACTCCTTTTATTACAATTCCCCTAG
1 CTGATTCTTTAGGGAAGATTTGTTTTGTTTATACTTTTTCACTTCTTTTATTACAATTCCCCTAG
85360557 GGCATGGGTGACTTTCCTGGGAGGTCAATTCAACCCCATAGAGCTGCTT
66 GGCATGGGTGACTTTCCTGGGAGGTCAATTCAACCCCATAGAGCTGCTT
85360606 CTGATTCTTTAGGGAAGATTTGTTTTGTTTATACTTTTTCACTTCTTTTATTACAATTCCCCTAG
1 CTGATTCTTTAGGGAAGATTTGTTTTGTTTATACTTTTTCACTTCTTTTATTACAATTCCCCTAG
85360671 GGCATGGGTGACTTTCCTGGGAGGTCAATTCAACCCCATAGAGCTGCTT
66 GGCATGGGTGACTTTCCTGGGAGGTCAATTCAACCCCATAGAGCTGCTT
85360720 CTGATTCTTTAGGGAAGATTTGTTTTGTTTATACTTTTTCACTTCTTTTATTACAATTCCCCTAG
1 CTGATTCTTTAGGGAAGATTTGTTTTGTTTATACTTTTTCACTTCTTTTATTACAATTCCCCTAG
85360785 GGCATGGGTGACTTTCCTGGGAGGTCAATTCAACCCCATAGAGCTGCTT
66 GGCATGGGTGACTTTCCTGGGAGGTCAATTCAACCCCATAGAGCTGCTT
85360834 CT
1 CT
85360836 TTAAACCGAT
Statistics
Matches: 228, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
114 228 1.00
ACGTcount: A:0.20, C:0.21, G:0.19, T:0.40
Consensus pattern (114 bp):
CTGATTCTTTAGGGAAGATTTGTTTTGTTTATACTTTTTCACTTCTTTTATTACAATTCCCCTAG
GGCATGGGTGACTTTCCTGGGAGGTCAATTCAACCCCATAGAGCTGCTT
Found at i:85364169 original size:4 final size:4
Alignment explanation
Indices: 85364160--85364185 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
85364150 TCAGATCATA
85364160 AGAC AGAC AGAC AGAC AGAC AGAC AG
1 AGAC AGAC AGAC AGAC AGAC AGAC AG
85364186 GATACTCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.50, C:0.23, G:0.27, T:0.00
Consensus pattern (4 bp):
AGAC
Found at i:85369067 original size:18 final size:18
Alignment explanation
Indices: 85369033--85369070 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
85369023 TTGCATAAAT
**
85369033 AATATGACTAATTGTTAA
1 AATATGACTAACCGTTAA
85369051 AATATGACTAACCGTTAA
1 AATATGACTAACCGTTAA
85369069 AA
1 AA
85369071 AGAAGTCATC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.32
Consensus pattern (18 bp):
AATATGACTAACCGTTAA
Found at i:85372388 original size:17 final size:17
Alignment explanation
Indices: 85372366--85372408 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
85372356 TTTTATTAGC
85372366 ACAAATATAATATAGT-T
1 ACAAATATAATAT-GTGT
*
85372383 ACAAATACAATATGTGT
1 ACAAATATAATATGTGT
*
85372400 AAAAATATA
1 ACAAATATA
85372409 TACGAGACCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 2 0.09
17 20 0.91
ACGTcount: A:0.56, C:0.07, G:0.07, T:0.30
Consensus pattern (17 bp):
ACAAATATAATATGTGT
Found at i:85376098 original size:30 final size:30
Alignment explanation
Indices: 85376057--85376133 Score: 86
Period size: 31 Copynumber: 2.6 Consensus size: 30
85376047 ACAATTTGAC
*
85376057 ACATG-AACTTTGATTTAGTGT-AATTATAT
1 ACATGAAACTTTGATTTAGT-TCAAATATAT
* *
85376086 ACATTAAACTTTGATCATAGTTCAAATATAT
1 ACATGAAACTTTGAT-TTAGTTCAAATATAT
*
85376117 ACATGAAACTCTGATTT
1 ACATGAAACTTTGATTT
85376134 TAATTTGTGT
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
29 4 0.10
30 11 0.28
31 24 0.62
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40
Consensus pattern (30 bp):
ACATGAAACTTTGATTTAGTTCAAATATAT
Found at i:85380228 original size:38 final size:38
Alignment explanation
Indices: 85380184--85380261 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
85380174 AAATACAAGC
85380184 ATAAATCAAAAGATAGACATTGATCTTATAAAACTAAT
1 ATAAATCAAAAGATAGACATTGATCTTATAAAACTAAT
*
85380222 ATAAATCAAAAGATAGACATTGATCTTGTAAAACTAAT
1 ATAAATCAAAAGATAGACATTGATCTTATAAAACTAAT
85380260 AT
1 AT
85380262 CTCAGGGGTT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.51, C:0.10, G:0.09, T:0.29
Consensus pattern (38 bp):
ATAAATCAAAAGATAGACATTGATCTTATAAAACTAAT
Found at i:85387762 original size:20 final size:20
Alignment explanation
Indices: 85387725--85387763 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
85387715 CTTTTTTAAA
*
85387725 TTAATGTTTATATTATATAT
1 TTAATGTTTATATGATATAT
* *
85387745 TTAATTTTTATGTGATATA
1 TTAATGTTTATATGATATA
85387764 ATATAATAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.59
Consensus pattern (20 bp):
TTAATGTTTATATGATATAT
Found at i:85397488 original size:26 final size:26
Alignment explanation
Indices: 85397457--85397564 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
85397447 TGAAATGCCC
*
85397457 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
85397483 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
85397509 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
85397535 ATCATGGAACATTTATCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
85397561 ATCA
1 ATCA
85397565 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:85397931 original size:20 final size:20
Alignment explanation
Indices: 85397906--85397945 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
85397896 ATCTTCTATG
85397906 AAGGTTCAAGAGTTGCTTTA
1 AAGGTTCAAGAGTTGCTTTA
85397926 AAGGTTCAAGAGTTGCTTTA
1 AAGGTTCAAGAGTTGCTTTA
85397946 CCTACAGTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.10, G:0.25, T:0.35
Consensus pattern (20 bp):
AAGGTTCAAGAGTTGCTTTA
Found at i:85398537 original size:18 final size:19
Alignment explanation
Indices: 85398514--85398559 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
85398504 TTACATTATA
* *
85398514 ACCCAAAACCC-ATTTACT
1 ACCCAAAACCCAACTAACT
85398532 ACCC-AAACCCAACTAACT
1 ACCCAAAACCCAACTAACT
85398550 ACCCAAAACC
1 ACCCAAAACC
85398560 ACTTAAACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 6 0.25
18 13 0.54
19 5 0.21
ACGTcount: A:0.43, C:0.43, G:0.00, T:0.13
Consensus pattern (19 bp):
ACCCAAAACCCAACTAACT
Found at i:85399853 original size:3 final size:3
Alignment explanation
Indices: 85399838--85400039 Score: 97
Period size: 3 Copynumber: 69.0 Consensus size: 3
85399828 TTTAATACCA
* * * *
85399838 TAT TAT ATAT TAT TAT TAT T-G TAT CTAT TTT TAC TAC TAT T-T TAT
1 TAT TAT -TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT
* * * * * *
85399883 CTAT TCT TTT TA- TAT TAT TAT TAT CAT CAT TAC TAT CAT TAT TA-
1 -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
85399927 TAT TAT TAT TAT TA- TAT TA- TATT TAG TAT TAT CT-T TAA TAT TA-
1 TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT -TAT TAT TAT TAT
* *
85399970 TAT T-T CTAT TAT TA- TATT TAT TAT TAT CTAT TAC T-T TAT TTT TAT
1 TAT TAT -TAT TAT TAT TA-T TAT TAT TAT -TAT TAT TAT TAT TAT TAT
* *
85400015 TTT TAT T-T TAA TAT TAT TA- TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
85400040 ATTCACCTTT
Statistics
Matches: 151, Mismatches: 27, Indels: 42
0.69 0.12 0.19
Matches are distributed among these distances:
2 22 0.15
3 111 0.74
4 18 0.12
ACGTcount: A:0.30, C:0.06, G:0.01, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:85399968 original size:38 final size:39
Alignment explanation
Indices: 85399922--85400031 Score: 110
Period size: 38 Copynumber: 3.0 Consensus size: 39
85399912 TTACTATCAT
*
85399922 TATT-ATATTATTATTATTATATTATATTTAGTATTATC
1 TATTAATATTATTATTATTATATTATATTTAATATTATC
*
85399960 T-TTAATATTA-TATT-TCTATTATTATATTTATTATTATC
1 TATTAATATTATTATTAT-TA-TATTATATTTAATATTATC
* *
85399998 TATTACT-TTATTTTTATT-T-TTAT-TTTAATATTAT
1 TATTAATATTATTATTATTATATTATATTTAATATTAT
85400032 TATATTATAT
Statistics
Matches: 62, Mismatches: 4, Indels: 15
0.77 0.05 0.19
Matches are distributed among these distances:
35 10 0.16
36 5 0.08
37 9 0.15
38 29 0.47
39 8 0.13
40 1 0.02
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.65
Consensus pattern (39 bp):
TATTAATATTATTATTATTATATTATATTTAATATTATC
Found at i:85401252 original size:20 final size:21
Alignment explanation
Indices: 85401223--85401262 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
85401213 TAAGTTTTCT
*
85401223 AAAATTTTAAATAT-ATTAAA
1 AAAATGTTAAATATAATTAAA
*
85401243 AAAATGTTAAGTATAATTAA
1 AAAATGTTAAATATAATTAA
85401263 TTTTAAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (21 bp):
AAAATGTTAAATATAATTAAA
Found at i:85401288 original size:18 final size:18
Alignment explanation
Indices: 85401258--85401303 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
85401248 GTTAAGTATA
*
85401258 ATTA-ATTTTAAAATTTT
1 ATTATATTTAAAAATTTT
85401275 ATTATATTTAAAAATTTT
1 ATTATATTTAAAAATTTT
*
85401293 AATATATTTAA
1 ATTATATTTAA
85401304 TATATATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
17 4 0.15
18 22 0.85
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
ATTATATTTAAAAATTTT
Found at i:85401445 original size:71 final size:70
Alignment explanation
Indices: 85401370--85401514 Score: 238
Period size: 71 Copynumber: 2.1 Consensus size: 70
85401360 AAAAAACTTA
* *
85401370 AAAAAATTAAATATATT-AAAAAATGTTAAGTATAATCAATTTTAAAATTTTAATATATTTAATA
1 AAAAAATTAAATATATTAAAAAAATGTTAAGTATAACCAATTTTAAAA-TTTAATATATTCAATA
85401434 CATTTTT
65 CA-TTTT
*
85401441 AAAAAATTAAATATATTAAAAAAATGTTAAGTATAACCAATTTTAAAATTTAATATATTCAATAT
1 AAAAAATTAAATATATTAAAAAAATGTTAAGTATAACCAATTTTAAAATTTAATATATTCAATAC
85401506 ATTTT
66 ATTTT
85401511 AAAA
1 AAAA
85401515 TTTTAATATA
Statistics
Matches: 70, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
70 8 0.11
71 33 0.47
72 29 0.41
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (70 bp):
AAAAAATTAAATATATTAAAAAAATGTTAAGTATAACCAATTTTAAAATTTAATATATTCAATAC
ATTTT
Found at i:85401621 original size:35 final size:37
Alignment explanation
Indices: 85401558--85401627 Score: 90
Period size: 35 Copynumber: 1.9 Consensus size: 37
85401548 AATATTTTTT
*
85401558 AATATATTTAAACTTTTAAAAAACTTAAA-AAAATTA
1 AATATATTTAAAATTTTAAAAAACTTAAAGAAAATTA
* **
85401594 AATATA-TTAAAATTTTAAATATGTTAAAGAAAAT
1 AATATATTTAAAATTTTAAAAAACTTAAAGAAAAT
85401628 GTTGAGTATA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
35 18 0.62
36 11 0.38
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.37
Consensus pattern (37 bp):
AATATATTTAAAATTTTAAAAAACTTAAAGAAAATTA
Found at i:85402381 original size:15 final size:16
Alignment explanation
Indices: 85402348--85402386 Score: 60
Period size: 17 Copynumber: 2.4 Consensus size: 16
85402338 AGTTAACATT
85402348 TTTTAATATATTTAAAA
1 TTTTAATATATTT-AAA
*
85402365 TTTTAATATATTTAAT
1 TTTTAATATATTTAAA
85402381 TTTTAA
1 TTTTAA
85402387 AAATTCTAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 8 0.38
17 13 0.62
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TTTTAATATATTTAAA
Found at i:85408247 original size:62 final size:62
Alignment explanation
Indices: 85408150--85408284 Score: 261
Period size: 62 Copynumber: 2.2 Consensus size: 62
85408140 TAGGTTTTGT
85408150 TTGGCATGGAAGATAAAATTAATTAATTAAATTAATTGCAAGGGTTTTACTTTGTTTTTATC
1 TTGGCATGGAAGATAAAATTAATTAATTAAATTAATTGCAAGGGTTTTACTTTGTTTTTATC
85408212 TTGGCATGGAAGATAAAATTAATTAATTAAATTAATTGCAAGGGTTTTACTTTGTTTTTATC
1 TTGGCATGGAAGATAAAATTAATTAATTAAATTAATTGCAAGGGTTTTACTTTGTTTTTATC
*
85408274 TTAGCATGGAA
1 TTGGCATGGAA
85408285 AATTCAATAT
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
62 72 1.00
ACGTcount: A:0.34, C:0.07, G:0.17, T:0.42
Consensus pattern (62 bp):
TTGGCATGGAAGATAAAATTAATTAATTAAATTAATTGCAAGGGTTTTACTTTGTTTTTATC
Found at i:85409338 original size:26 final size:26
Alignment explanation
Indices: 85409309--85409359 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
85409299 ATTTTAAATC
85409309 AATAAAATTAACACAACTTTT-TTTAA
1 AATAAAATTAACACAA-TTTTGTTTAA
*
85409335 AATAAAATTAGCACAATTTTGTTTA
1 AATAAAATTAACACAATTTTGTTTA
85409360 TTCTAACAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 4 0.17
26 19 0.83
ACGTcount: A:0.47, C:0.10, G:0.04, T:0.39
Consensus pattern (26 bp):
AATAAAATTAACACAATTTTGTTTAA
Found at i:85409399 original size:34 final size:34
Alignment explanation
Indices: 85409356--85409428 Score: 128
Period size: 34 Copynumber: 2.1 Consensus size: 34
85409346 CACAATTTTG
*
85409356 TTTATTCTAACAATTTTTAAACTACTAATTATAA
1 TTTATTCTAAAAATTTTTAAACTACTAATTATAA
85409390 TTTATTCTAAAAATTTTTAAACTACTAATTATAA
1 TTTATTCTAAAAATTTTTAAACTACTAATTATAA
*
85409424 ATTAT
1 TTTAT
85409429 AATTGTAAGG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.48
Consensus pattern (34 bp):
TTTATTCTAAAAATTTTTAAACTACTAATTATAA
Found at i:85414915 original size:3 final size:3
Alignment explanation
Indices: 85414907--85415029 Score: 81
Period size: 3 Copynumber: 40.3 Consensus size: 3
85414897 GTTTATTTAC
* * *
85414907 TTA TTA TTA -CA TTA TTAA TTAA TCTA TTA TTA CTA TTA TTA TTT TTA
1 TTA TTA TTA TTA TTA TT-A TT-A T-TA TTA TTA TTA TTA TTA TTA TTA
** **
85414954 -TA TTA TTA TT- TATA TTA TTA TTA TTA TTTA TTA CCA AAA TTA TTA
1 TTA TTA TTA TTA T-TA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
* * * *
85414999 TTA TCA TTG CTA TTA TTA TTA TTA TTG TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
85415030 ACTATTAAAC
Statistics
Matches: 93, Mismatches: 20, Indels: 14
0.73 0.16 0.11
Matches are distributed among these distances:
2 4 0.04
3 76 0.82
4 12 0.13
5 1 0.01
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:85418337 original size:20 final size:20
Alignment explanation
Indices: 85418312--85418356 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
85418302 ATTACAGTAA
85418312 GCCAGCCAAGGACGATAACT
1 GCCAGCCAAGGACGATAACT
85418332 GCCAGCCAAGGACGATAACT
1 GCCAGCCAAGGACGATAACT
*
85418352 ACCAG
1 GCCAG
85418357 GCATCAGGTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.36, C:0.31, G:0.24, T:0.09
Consensus pattern (20 bp):
GCCAGCCAAGGACGATAACT
Found at i:85421943 original size:130 final size:130
Alignment explanation
Indices: 85421774--85422287 Score: 643
Period size: 130 Copynumber: 4.0 Consensus size: 130
85421764 GTGAATTCAC
* * * ** * *
85421774 AGATCTTATCTCCCTAAGTAGTAGTAGAGAAGATCGAAGACCGCGAATCTTGTCTCCCTAAGTAA
1 AGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCAAAGATGGCGAATCTTGTCTCCCTAAGCAG
* * * *
85421839 AAGTGGAGTAGATTTAAGCTACCATCCTATCTCCCTAAACAGTAGTGGAGTAGGCTGAAGATTAT
66 TAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTAT
* ** *
85421904 AGATCTTATCTTCCATAA-CAGTAGTAGAGCAGATTGAAGATGGTGAATCTTGTCTCCCTAAGCA
1 AGATCTTATC-TCCCTAAGCAGTAGTAGAGCAGATCAAAGATGGCGAATCTTGTCTCCCTAAGCA
* * * *
85421968 GTAGTGGAGCAGATTTAAGCCATCATCCCATCTCTCTAAGCAGTAGTGGAGTAGGCTAAAGATTA
65 GTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTA
*
85422033 C
130 T
* * *
85422034 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGATGGTGAATCTTGTCTCCCTAAGCAG
1 AGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCAAAGATGGCGAATCTTGTCTCCCTAAGCAG
* * * * * *
85422099 CAGTGGAGCAGATTTAAGCCACCATCTTATCTCCTTAAGCAGTAGTGGAGTAGGTTGAATATTGT
66 TAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTAT
* * * ** * * *
85422164 AGATCTTGTCTCCCTAAGCAGTAGTGGAACAGATCAAAGATAACAAATCTTATCTCCTTAAGCAG
1 AGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCAAAGATGGCGAATCTTGTCTCCCTAAGCAG
* * * *
85422229 TAGTGGAGTAGATTTAAGCCACCATCCTATCTCCCTAAGTAGTAGTGGAGCAGGTTGAA
66 TAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAA
85422288 ATCAATAATT
Statistics
Matches: 335, Mismatches: 47, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
129 6 0.02
130 323 0.96
131 6 0.02
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (130 bp):
AGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCAAAGATGGCGAATCTTGTCTCCCTAAGCAG
TAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTAT
Found at i:85422060 original size:44 final size:44
Alignment explanation
Indices: 85421997--85422284 Score: 219
Period size: 44 Copynumber: 6.6 Consensus size: 44
85421987 CCATCATCCC
* * *
85421997 ATCTCTCTAAGCAGTAGTGGAGTAGGCTAAAGATTACAGATCTT
1 ATCTCCCTAAGCAGTAGTGGAGCAGGTTAAAGATTACAGATCTT
* *
85422041 ATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGATGGT-GA-ATCTT
1 ATCTCCCTAAGCAGTAGTGGAGCAGGTTAAAGAT--TACAGATCTT
* * * * ** *
85422085 GTCTCCCTAAGCAGCAGTGGAGCAGATTTAAG-CCAC-CATCTT
1 ATCTCCCTAAGCAGTAGTGGAGCAGGTTAAAGATTACAGATCTT
* * * * **
85422127 ATCTCCTTAAGCAGTAGTGGAGTAGGTTGAATATTGTAGATCTT
1 ATCTCCCTAAGCAGTAGTGGAGCAGGTTAAAGATTACAGATCTT
* * * * * *
85422171 GTCTCCCTAAGCAGTAGTGGAACAGATCAAAGATAACAAATCTT
1 ATCTCCCTAAGCAGTAGTGGAGCAGGTTAAAGATTACAGATCTT
* * * * ** * *
85422215 ATCTCCTTAAGCAGTAGTGGAGTAGATTTAAG-CCAC-CATCCT
1 ATCTCCCTAAGCAGTAGTGGAGCAGGTTAAAGATTACAGATCTT
*
85422257 ATCTCCCTAAGTAGTAGTGGAGCAGGTT
1 ATCTCCCTAAGCAGTAGTGGAGCAGGTT
85422285 GAAATCAATA
Statistics
Matches: 189, Mismatches: 49, Indels: 14
0.75 0.19 0.06
Matches are distributed among these distances:
42 58 0.31
43 2 0.01
44 127 0.67
45 1 0.01
46 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (44 bp):
ATCTCCCTAAGCAGTAGTGGAGCAGGTTAAAGATTACAGATCTT
Found at i:85422126 original size:86 final size:88
Alignment explanation
Indices: 85422036--85422242 Score: 267
Period size: 86 Copynumber: 2.4 Consensus size: 88
85422026 AAGATTACAG
* *
85422036 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGATGGT-GAATCTTGTCTCCCTAAGCAGC
1 ATCTTATCTCCTTAAGCAGTAGTGGAGTAGATTAAAGATGGTAG-ATCTTGTCTCCCTAAGCAGC
* ** * *
85422100 AGTGGAGCAGATTTAAG-CCAC-C
65 AGTGGAACAGATCAAAGACAACAA
* * * * *
85422122 ATCTTATCTCCTTAAGCAGTAGTGGAGTAGGTTGAATATTGTAGATCTTGTCTCCCTAAGCAGTA
1 ATCTTATCTCCTTAAGCAGTAGTGGAGTAGATTAAAGATGGTAGATCTTGTCTCCCTAAGCAGCA
*
85422187 GTGGAACAGATCAAAGATAACAA
66 GTGGAACAGATCAAAGACAACAA
85422210 ATCTTATCTCCTTAAGCAGTAGTGGAGTAGATT
1 ATCTTATCTCCTTAAGCAGTAGTGGAGTAGATT
85422243 TAAGCCACCA
Statistics
Matches: 104, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
86 69 0.66
87 3 0.03
88 32 0.31
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.29
Consensus pattern (88 bp):
ATCTTATCTCCTTAAGCAGTAGTGGAGTAGATTAAAGATGGTAGATCTTGTCTCCCTAAGCAGCA
GTGGAACAGATCAAAGACAACAA
Found at i:85422402 original size:88 final size:88
Alignment explanation
Indices: 85422300--85422544 Score: 332
Period size: 88 Copynumber: 2.8 Consensus size: 88
85422290 CAATAATTTT
* * * *
85422300 TATCTCTTTAAAGTTCTAGTGGAGTAGATCGAAACTACAAATTTCTTCTCCCTGAAATGACATTG
1 TATCTCCTTGAAGTTCTAGTGGAGTAGATCGAAGCTACAAATTTCTTCTCCCTGAAATGGCATTG
85422365 GAGCGGCTCGAAGCCACAATTCG
66 GAGCGGCTCGAAGCCACAATTCG
* * *
85422388 TATCTCCTTGAAGTTCTAGTGGAGTAGATTGAAGCTACAAATCTCTTCTCCTTGAAATGGCATTG
1 TATCTCCTTGAAGTTCTAGTGGAGTAGATCGAAGCTACAAATTTCTTCTCCCTGAAATGGCATTG
* * **
85422453 GAACGGCTCGAAGCTACAATTTT
66 GAGCGGCTCGAAGCCACAATTCG
* * *
85422476 TATCTCCTTGAAGTTCCA-TCGGAGTAGATCGAAGCTACAAATCTT-TTCTTCCTAAAATGGCAT
1 TATCTCCTTGAAGTTCTAGT-GGAGTAGATCGAAGCTACAAAT-TTCTTCTCCCTGAAATGGCAT
85422539 TGGAGC
64 TGGAGC
85422545 AATTGAAGTT
Statistics
Matches: 137, Mismatches: 18, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
87 1 0.01
88 135 0.99
89 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (88 bp):
TATCTCCTTGAAGTTCTAGTGGAGTAGATCGAAGCTACAAATTTCTTCTCCCTGAAATGGCATTG
GAGCGGCTCGAAGCCACAATTCG
Found at i:85422508 original size:44 final size:43
Alignment explanation
Indices: 85422294--85422515 Score: 135
Period size: 44 Copynumber: 5.0 Consensus size: 43
85422284 TGAAATCAAT
* * * * *
85422294 AATTTTTATCTCTTTAAAGTTCTAGTGGAGTAGATCGAAACTAC
1 AATTTCTATCTCCTTGAAGTTCCA-TGGAGTAGATCGAAGCTAC
* * ** ** * *
85422338 AAATTTCT-TCTCCCTGAAATGACATTGGAGCGGCTCGAAGCCAC
1 -AATTTCTATCTCCTTGAAGTTCCA-TGGAGTAGATCGAAGCTAC
* *
85422382 AA-TTCGTATCTCCTTGAAGTTCTAGTGGAGTAGATTGAAGCTAC
1 AATTTC-TATCTCCTTGAAGTTCCA-TGGAGTAGATCGAAGCTAC
* * ** *** *
85422426 AAATCTCT-TCTCCTTGAAATGGCATTGGAACGGCTCGAAGCTAC
1 -AATTTCTATCTCCTTGAAGTTCCA-TGGAGTAGATCGAAGCTAC
*
85422470 AATTTTTATCTCCTTGAAGTTCCATCGGAGTAGATCGAAGCTAC
1 AATTTCTATCTCCTTGAAGTTCCAT-GGAGTAGATCGAAGCTAC
85422514 AA
1 AA
85422516 ATCTTTTCTT
Statistics
Matches: 126, Mismatches: 45, Indels: 13
0.68 0.24 0.07
Matches are distributed among these distances:
42 3 0.02
43 9 0.07
44 103 0.82
45 9 0.07
46 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (43 bp):
AATTTCTATCTCCTTGAAGTTCCATGGAGTAGATCGAAGCTAC
Found at i:85432222 original size:3 final size:3
Alignment explanation
Indices: 85432214--85432243 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
85432204 TGTATTTCTA
85432214 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
85432244 ATAGTAGTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:85432425 original size:12 final size:12
Alignment explanation
Indices: 85432408--85432432 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
85432398 GTATTATGTT
85432408 TTTTTAATACCA
1 TTTTTAATACCA
85432420 TTTTTAATACCA
1 TTTTTAATACCA
85432432 T
1 T
85432433 GCATGTTGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.00, T:0.52
Consensus pattern (12 bp):
TTTTTAATACCA
Found at i:85432932 original size:27 final size:28
Alignment explanation
Indices: 85432902--85432954 Score: 99
Period size: 27 Copynumber: 1.9 Consensus size: 28
85432892 TTTGACACTA
85432902 TCGCGCTTATTATTA-GTATTAGTACTG
1 TCGCGCTTATTATTACGTATTAGTACTG
85432929 TCGCGCTTATTATTACGTATTAGTAC
1 TCGCGCTTATTATTACGTATTAGTAC
85432955 CGTAATTTGC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
27 15 0.60
28 10 0.40
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.43
Consensus pattern (28 bp):
TCGCGCTTATTATTACGTATTAGTACTG
Found at i:85436603 original size:9 final size:9
Alignment explanation
Indices: 85436589--85436613 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
85436579 CGCTTTTTTA
85436589 CATTCATTG
1 CATTCATTG
85436598 CATTCATTG
1 CATTCATTG
85436607 CATTCAT
1 CATTCAT
85436614 GCACCGGCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.24, G:0.08, T:0.44
Consensus pattern (9 bp):
CATTCATTG
Found at i:85439743 original size:79 final size:78
Alignment explanation
Indices: 85439632--85439854 Score: 240
Period size: 79 Copynumber: 2.8 Consensus size: 78
85439622 GCTCCTCGTT
* * *
85439632 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCAGGACTTAACCCG
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAATTCGCACAAATGCCTTC-GGACTTAGCCCG
*
85439696 GATTTAGTAACTCGCA
63 GAATTAGTAACTCGCA
* *
85439712 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGGCTTAGCCCAGA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAAT-TCGCACAAATGCCTTCGGACTTAGCCCGGA
*
85439776 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
* * * *
85439790 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-AATTCGCACAAATGCCTTC-GGACTTAGCCC
85439852 GGA
62 GGA
85439855 CATCATTCAA
Statistics
Matches: 123, Mismatches: 13, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
78 44 0.36
79 55 0.45
80 23 0.19
81 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAATTCGCACAAATGCCTTCGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:85439749 original size:39 final size:39
Alignment explanation
Indices: 85439632--85439854 Score: 233
Period size: 39 Copynumber: 5.6 Consensus size: 39
85439622 GCTCCTCGTT
* *
85439632 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * * *
85439672 CAAATGCCTTCAGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGGCTTAGCCCGGAATTAGTATCTCGCA
85439712 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
*
85439751 CAAATGCCTTCGGGCTTAGCCCAGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * *
85439790 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TCGCA
85439831 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
85439855 CATCATTCAA
Statistics
Matches: 160, Mismatches: 15, Indels: 17
0.83 0.08 0.09
Matches are distributed among these distances:
39 94 0.59
40 53 0.33
41 13 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:85447967 original size:43 final size:44
Alignment explanation
Indices: 85447913--85448004 Score: 114
Period size: 43 Copynumber: 2.1 Consensus size: 44
85447903 GCCTCAGCGA
* * * *
85447913 AGCAGATTGAAGTCACTAGCCTTATCTCCCTGAAGT-GCAGTGG
1 AGCAGACTGAAGTCACAAGCCTCATCTCCCTGAAGTCGCAATGG
* * *
85447956 AGCAGACTGAAGTTACAAGTCTCATCTCCTTGAAGTCGCAATGG
1 AGCAGACTGAAGTCACAAGCCTCATCTCCCTGAAGTCGCAATGG
85448000 AGCAG
1 AGCAG
85448005 GCTAAATGTA
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
43 30 0.73
44 11 0.27
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (44 bp):
AGCAGACTGAAGTCACAAGCCTCATCTCCCTGAAGTCGCAATGG
Found at i:85448083 original size:44 final size:44
Alignment explanation
Indices: 85448020--85448353 Score: 255
Period size: 44 Copynumber: 7.6 Consensus size: 44
85448010 ATGTATAGAT
* * *
85448020 CTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGGCGATGGAC
1 CTTAAACCCCTAAGCAGTAGGGAAACAGATCGAAGGTGATGGAC
* * * * * ** *
85448064 CTTAAACCCCTAAGCAGTAGGGTAACAGGTGGAA-TTTACAGAT
1 CTTAAACCCCTAAGCAGTAGGGAAACAGATCGAAGGTGATGGAC
* *
85448107 CTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGGTGATGGAC
1 CTTAAACCCCTAAGCAGTAGGGAAACAGATCGAAGGTGATGGAC
* * * * * * * ** *
85448151 CTTAAACCCCTAAGTAGTAGGGTAACAGGTTGGA-TTTACAGAT
1 CTTAAACCCCTAAGCAGTAGGGAAACAGATCGAAGGTGATGGAC
* *
85448194 CTT-AACTCCCTAAGCAGTAGGGAAACAGATCGAAGGGGATGGGC
1 CTTAAAC-CCCTAAGCAGTAGGGAAACAGATCGAAGGTGATGGAC
* * * ** * *
85448238 CGTAAACCCCTAAGCAGTAGGGTAACAG-GCTGAATTTGCA-AGAT
1 CTTAAACCCCTAAGCAGTAGGGAAACAGATC-GAAGGTG-ATGGAC
* * * * *
85448282 CTTAACCCCCTAAGTAGTAGGGAAATATATCGAAGGTGATGGGC
1 CTTAAACCCCTAAGCAGTAGGGAAACAGATCGAAGGTGATGGAC
* *
85448326 CTTAAACCCCTAAGCAATAGGGTAACAG
1 CTTAAACCCCTAAGCAGTAGGGAAACAG
85448354 GCTAAAAATT
Statistics
Matches: 210, Mismatches: 72, Indels: 16
0.70 0.24 0.05
Matches are distributed among these distances:
42 3 0.01
43 63 0.30
44 139 0.66
45 5 0.02
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (44 bp):
CTTAAACCCCTAAGCAGTAGGGAAACAGATCGAAGGTGATGGAC
Found at i:85448162 original size:87 final size:88
Alignment explanation
Indices: 85448016--85448356 Score: 517
Period size: 87 Copynumber: 3.9 Consensus size: 88
85448006 CTAAATGTAT
*
85448016 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGGCGATGGACCTTAAACCCCTAAGCAG
1 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGGTGATGGACCTTAAACCCCTAAGCAG
85448081 TAGGGTAACAGG-TGGAATTTAC
66 TAGGGTAACAGGCTGGAATTTAC
*
85448103 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGGTGATGGACCTTAAACCCCTAAGTAG
1 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGGTGATGGACCTTAAACCCCTAAGCAG
*
85448168 TAGGGTAACAGGTTGG-ATTTAC
66 TAGGGTAACAGGCTGGAATTTAC
* * * * *
85448190 AGATCTTAACTCCCTAAGCAGTAGGGAAACAGATCGAAGGGGATGGGCCGTAAACCCCTAAGCAG
1 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGGTGATGGACCTTAAACCCCTAAGCAG
*
85448255 TAGGGTAACAGGCT-GAATTTGC
66 TAGGGTAACAGGCTGGAATTTAC
* * * * *
85448277 AAGATCTTAACCCCCTAAGTAGTAGGGAAATATATCGAAGGTGATGGGCCTTAAACCCCTAAGCA
1 -AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGGTGATGGACCTTAAACCCCTAAGCA
*
85448342 ATAGGGTAACAGGCT
65 GTAGGGTAACAGGCT
85448357 AAAAATTATA
Statistics
Matches: 234, Mismatches: 17, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
86 1 0.00
87 158 0.68
88 75 0.32
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (88 bp):
AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGGTGATGGACCTTAAACCCCTAAGCAG
TAGGGTAACAGGCTGGAATTTAC
Found at i:85449783 original size:12 final size:12
Alignment explanation
Indices: 85449766--85449790 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
85449756 GTATTATGTT
85449766 TTTTTAATACCA
1 TTTTTAATACCA
85449778 TTTTTAATACCA
1 TTTTTAATACCA
85449790 T
1 T
85449791 GCATGTTGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.00, T:0.52
Consensus pattern (12 bp):
TTTTTAATACCA
Found at i:85452344 original size:16 final size:16
Alignment explanation
Indices: 85452323--85452353 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
85452313 TTCACTATTA
*
85452323 TGTCTTTTGTATTTTT
1 TGTCTTTTATATTTTT
85452339 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
85452354 GTATGCAAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.06, G:0.10, T:0.74
Consensus pattern (16 bp):
TGTCTTTTATATTTTT
Found at i:85456067 original size:43 final size:43
Alignment explanation
Indices: 85456008--85456118 Score: 170
Period size: 43 Copynumber: 2.6 Consensus size: 43
85455998 GAGTTCGGTT
*
85456008 TAATGTAA-TGGCACTAAGTGTGCGATACAATTATAGCTTCGGC
1 TAAT-TAATTGGCACTAAGTGTGCGATACAATTATAGCTTCGAC
* *
85456051 TAATTAATTGGCACTAAGTGTGCGATGCAATTATAGCTTCGAT
1 TAATTAATTGGCACTAAGTGTGCGATACAATTATAGCTTCGAC
*
85456094 TAATTAATTAGCACTAAGTGTGCGA
1 TAATTAATTGGCACTAAGTGTGCGA
85456119 GTTCGTTGAA
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
42 3 0.05
43 60 0.95
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (43 bp):
TAATTAATTGGCACTAAGTGTGCGATACAATTATAGCTTCGAC
Found at i:85458341 original size:26 final size:26
Alignment explanation
Indices: 85458312--85458416 Score: 183
Period size: 26 Copynumber: 4.0 Consensus size: 26
85458302 TGATACAAAT
85458312 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
85458338 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
85458364 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
85458390 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
85458416 T
1 T
85458417 TATAGGAATT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:85464028 original size:46 final size:46
Alignment explanation
Indices: 85463969--85464089 Score: 154
Period size: 46 Copynumber: 2.6 Consensus size: 46
85463959 ATGAAATGTG
*
85463969 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA-AGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAACAGAA
* * * *
85464015 TAAGACCACGGTTGAAAGATACCATGGAAACATGACAGAAACTGAG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAACAGAA
* * *
85464061 TAAGACCATAGTTGAAAGACACTATGGCA
1 TAAGACCATGGTTGAAAGATACCATGGCA
85464090 TCACGTCAAA
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
45 4 0.06
46 60 0.94
ACGTcount: A:0.43, C:0.17, G:0.23, T:0.17
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAACAGAA
Found at i:85466767 original size:12 final size:12
Alignment explanation
Indices: 85466732--85466792 Score: 59
Period size: 12 Copynumber: 5.1 Consensus size: 12
85466722 CGTGCTTTAC
* *
85466732 ATACAGAGTCAT
1 ATACAGATTCAG
* *
85466744 ATACACAGTCAG
1 ATACAGATTCAG
85466756 ATACAGATTCAG
1 ATACAGATTCAG
* *
85466768 ATTCAAATTCAG
1 ATACAGATTCAG
*
85466780 ATTCAGATTCAG
1 ATACAGATTCAG
85466792 A
1 A
85466793 CTTAGATTAT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 42 1.00
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.26
Consensus pattern (12 bp):
ATACAGATTCAG
Found at i:85466768 original size:6 final size:6
Alignment explanation
Indices: 85466752--85466792 Score: 64
Period size: 6 Copynumber: 6.8 Consensus size: 6
85466742 ATATACACAG
* *
85466752 TCAGAT ACAGAT TCAGAT TCAAAT TCAGAT TCAGAT TCAGA
1 TCAGAT TCAGAT TCAGAT TCAGAT TCAGAT TCAGAT TCAGA
85466793 CTTAGATTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (6 bp):
TCAGAT
Found at i:85467262 original size:17 final size:17
Alignment explanation
Indices: 85467240--85467277 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
85467230 TAGAATTTTG
* *
85467240 GGCCCAGATGCCTGTGT
1 GGCCCACATGCCCGTGT
85467257 GGCCCACATGCCCGTGT
1 GGCCCACATGCCCGTGT
85467274 GGCC
1 GGCC
85467278 TATACGGCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.11, C:0.37, G:0.34, T:0.18
Consensus pattern (17 bp):
GGCCCACATGCCCGTGT
Found at i:85472437 original size:79 final size:81
Alignment explanation
Indices: 85472301--85472485 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
85472291 TTGAATGATG
* *
85472301 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
85472365 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
85472380 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
85472442 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
85472460 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
85472486 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:85472499 original size:40 final size:40
Alignment explanation
Indices: 85472302--85472485 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
85472292 TGAATGATGT
* * * *
85472302 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
85472342 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
85472382 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
85472420 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
85472461 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
85472486 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:85472507 original size:79 final size:79
Alignment explanation
Indices: 85472354--85472518 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
85472344 GGACTAAGAT
* * **
85472354 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
85472419 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
85472433 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
85472496 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
85472512 CCGAAGG
1 CCGAAGG
85472519 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:85474623 original size:24 final size:24
Alignment explanation
Indices: 85474596--85474642 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
85474586 AAAATATATG
85474596 ATTTTTAATGAATGATTTTCTTAT
1 ATTTTTAATGAATGATTTTCTTAT
85474620 ATTTTTAATGAATGATTTTCTTA
1 ATTTTTAATGAATGATTTTCTTA
85474643 ATACTGAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.30, C:0.04, G:0.09, T:0.57
Consensus pattern (24 bp):
ATTTTTAATGAATGATTTTCTTAT
Found at i:85476758 original size:13 final size:13
Alignment explanation
Indices: 85476742--85476782 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
85476732 TAACTTCTCT
*
85476742 TTTTCAGAAGT-A
1 TTTTCAAAAGTGA
85476754 CTTTTCAAAAGTGA
1 -TTTTCAAAAGTGA
85476768 TTTTCAAAAGTGA
1 TTTTCAAAAGTGA
85476781 TT
1 TT
85476783 CAGAAAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
13 25 0.96
14 1 0.04
ACGTcount: A:0.34, C:0.10, G:0.15, T:0.41
Consensus pattern (13 bp):
TTTTCAAAAGTGA
Found at i:85483922 original size:35 final size:35
Alignment explanation
Indices: 85483878--85484974 Score: 1908
Period size: 35 Copynumber: 31.4 Consensus size: 35
85483868 TTCTCATTGA
* * **
85483878 AATACCATACCTACATTTCACAACTCAGTATGGGA
1 AATACCATACCTACGTTTCACAACTCGGTATGGTT
* * ** * *
85483913 AATGCCATACCTACATTTCTTAACTCAGTATGGAT
1 AATACCATACCTACGTTTCACAACTCGGTATGGTT
* * *
85483948 AATACCATACCTACATTTCTCAACTCGGTATGGAT
1 AATACCATACCTACGTTTCACAACTCGGTATGGTT
* * *
85483983 GATACCATACCTACATTTCACAACTCGGTATGGAT
1 AATACCATACCTACGTTTCACAACTCGGTATGGTT
* *
85484018 GATACCATACCTACGTTTCACATCTCGGTATGGTT
1 AATACCATACCTACGTTTCACAACTCGGTATGGTT
*
85484053 AATACCATACCTACCTTTCACAACTCGGTATGGTT
1 AATACCATACCTACGTTTCACAACTCGGTATGGTT
85484088 AATACCATACCTACGTTTCACAACTCGGTATGGTT
1 AATACCATACCTACGTTTCACAACTCGGTATGGTT
85484123 AATACCATACCTACGTTTCACAACTCGGTATGGTT
1 AATACCATACCTACGTTTCACAACTCGGTATGGTT
85484158 AATACCATACCTACGTTTCACAACTCGGTATGGTT
1 AATACCATACCTACGTTTCACAACTCGGTATGGTT
85484193 AATACCATACCTACGTTTCACAACTCGGTATGGTT
1 AATACCATACCTACGTTTCACAACTCGGTATGGTT
85484228 AATACCATACCTACGTTTCACAACTCGGTATGGTT
1 AATACCATACCTACGTTTCACAACTCGGTATGGTT
85484263 AATACCATACCTACGTTTCACAACTCGGTATGGTT
1 AATACCATACCTACGTTTCACAACTCGGTATGGTT
85484298 AATACCATACCTACGTTTCACAACTCGGTATGGTT
1 AATACCATACCTACGTTTCACAACTCGGTATGGTT
85484333 AATACCATACCTACGTTTCACAACTCGGTATGGTT
1 AATACCATACCTACGTTTCACAACTCGGTATGGTT
85484368 AATACCATACCTACGTTTCACAACTCGGTATGGTT
1 AATACCATACCTACGTTTCACAACTCGGTATGGTT
85484403 AATACCATACCTACGTTTCACAACTCGGTATGGTT
1 AATACCATACCTACGTTTCACAACTCGGTATGGTT
85484438 AATACCATACCTACGTTTCACAACTCGGTATGGTT
1 AATACCATACCTACGTTTCACAACTCGGTATGGTT
85484473 AATACCATACCTACGTTTCACAACTCGGTATGGTT
1 AATACCATACCTACGTTTCACAACTCGGTATGGTT
85484508 AATACCATACCTACGTTTCACAACTCGGTATGGTT
1 AATACCATACCTACGTTTCACAACTCGGTATGGTT
85484543 AATACCATACCTACGTTTCACAACTCGGTATGGTT
1 AATACCATACCTACGTTTCACAACTCGGTATGGTT
85484578 AATACCATACCTACGTTTCACAACTCGGTATGGTT
1 AATACCATACCTACGTTTCACAACTCGGTATGGTT
85484613 AATACCATACCTACGTTTCACAACTCGGTATGGTT
1 AATACCATACCTACGTTTCACAACTCGGTATGGTT
85484648 AATACCATACCTACGTTTCACAACTCGGTATGGTT
1 AATACCATACCTACGTTTCACAACTCGGTATGGTT
85484683 AATACCATACCTACGTTTCACAACTCGGTATGGTT
1 AATACCATACCTACGTTTCACAACTCGGTATGGTT
85484718 AATACCATACCTACGTTTCACAACTCGGTATGGTT
1 AATACCATACCTACGTTTCACAACTCGGTATGGTT
85484753 AATACCATACCTACGTTTCACAACTCGGTATGGTT
1 AATACCATACCTACGTTTCACAACTCGGTATGGTT
85484788 AATACCATACCTACGTTTCACAACTCGGTATGGTT
1 AATACCATACCTACGTTTCACAACTCGGTATGGTT
85484823 AATACCATACCTACGTTTCACAACTCGGTATGGTT
1 AATACCATACCTACGTTTCACAACTCGGTATGGTT
85484858 AATACCATACCTACGTTTCACAACTCGGTATGGTT
1 AATACCATACCTACGTTTCACAACTCGGTATGGTT
* * * * **
85484893 AATACCATACCTACGTATCATAGCTCAGTATGGAC
1 AATACCATACCTACGTTTCACAACTCGGTATGGTT
* ** * * *
85484928 GACGCCATACTTACATTTCACAACTCGATATGGTT
1 AATACCATACCTACGTTTCACAACTCGGTATGGTT
85484963 -ATACCATACCTA
1 AATACCATACCTA
85484975 TATTTCTCAC
Statistics
Matches: 1024, Mismatches: 38, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
34 9 0.01
35 1015 0.99
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACGTTTCACAACTCGGTATGGTT
Found at i:85498286 original size:14 final size:14
Alignment explanation
Indices: 85498253--85498291 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
85498243 TATATGTTTG
85498253 AAATTTGAAAAGATT
1 AAATTT-AAAAGATT
* *
85498268 TAATTTAAAATATT
1 AAATTTAAAAGATT
85498282 AAATTTAAAA
1 AAATTTAAAA
85498292 AAATTGAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 16 0.76
15 5 0.24
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.38
Consensus pattern (14 bp):
AAATTTAAAAGATT
Found at i:85502849 original size:55 final size:56
Alignment explanation
Indices: 85502781--85502904 Score: 187
Period size: 56 Copynumber: 2.2 Consensus size: 56
85502771 AAATTTGGTT
*
85502781 CTGGCCTTCTAATGGCCGGCACCA-ATACAAAAAAAAATTCAAATTTTTTTAGGTA
1 CTGGCCTTCTAATGACCGGCACCAGATACAAAAAAAAATTCAAATTTTTTTAGGTA
* * * * *
85502836 TTGGCTTTCTAATGACCTGCACCAGGTACAAAAAAAAATTCAAATTTTTTTAGGTG
1 CTGGCCTTCTAATGACCGGCACCAGATACAAAAAAAAATTCAAATTTTTTTAGGTA
85502892 CTGGCCTTCTAAT
1 CTGGCCTTCTAAT
85502905 TTTTTTCCAT
Statistics
Matches: 60, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
55 20 0.33
56 40 0.67
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.32
Consensus pattern (56 bp):
CTGGCCTTCTAATGACCGGCACCAGATACAAAAAAAAATTCAAATTTTTTTAGGTA
Done.