Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 26 of 276
Found at i:8243185 original size:13 final size:13
Alignment explanation
Indices: 8243167--8243193 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8243157 GCTCGGCAGG
8243167 GACACGCCCGTGT
1 GACACGCCCGTGT
8243180 GACACGCCCGTGT
1 GACACGCCCGTGT
8243193 G
1 G
8243194 CGATTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:8255371 original size:85 final size:85
Alignment explanation
Indices: 8255228--8255398 Score: 342
Period size: 85 Copynumber: 2.0 Consensus size: 85
8255218 NNNNNNNNNN
8255228 CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
1 CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
8255293 ACATCTTGTCCACCCATGCT
66 ACATCTTGTCCACCCATGCT
8255313 CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
1 CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
8255378 ACATCTTGTCCACCCATGCT
66 ACATCTTGTCCACCCATGCT
8255398 C
1 C
8255399 ATGGCCGGCC
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 86 1.00
ACGTcount: A:0.27, C:0.26, G:0.08, T:0.39
Consensus pattern (85 bp):
CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
ACATCTTGTCCACCCATGCT
Found at i:8257174 original size:22 final size:22
Alignment explanation
Indices: 8257146--8257190 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
8257136 TCCTATAATC
8257146 GTGTGAGCCAAAATGTCGTGTA
1 GTGTGAGCCAAAATGTCGTGTA
8257168 GTGTGAGCCAAAATGTCGTGTA
1 GTGTGAGCCAAAATGTCGTGTA
8257190 G
1 G
8257191 GTACCTTAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.13, G:0.33, T:0.27
Consensus pattern (22 bp):
GTGTGAGCCAAAATGTCGTGTA
Found at i:8263075 original size:45 final size:45
Alignment explanation
Indices: 8263016--8263134 Score: 172
Period size: 45 Copynumber: 2.7 Consensus size: 45
8263006 ATTGTACGGT
*
8263016 GATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
1 GATACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
*
8263061 GATACTATTTGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
1 GATACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
* *
8263106 AATGA-TA-TCGGG-CTTCGAGCCTAACAGGC
1 GAT-ACTATTCGGGCCTTCGAGCCTAGCAGGC
8263135 GAAATGTCAG
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
43 16 0.24
44 4 0.06
45 47 0.69
46 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.25
Consensus pattern (45 bp):
GATACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
Found at i:8265834 original size:16 final size:16
Alignment explanation
Indices: 8265813--8265852 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
8265803 TCTCAGAATA
8265813 ATAAAGAATAAAAAAC
1 ATAAAGAATAAAAAAC
8265829 ATAAAGAATAAAAAAC
1 ATAAAGAATAAAAAAC
8265845 ATAAAGAA
1 ATAAAGAA
8265853 AACCCAAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.75, C:0.05, G:0.07, T:0.12
Consensus pattern (16 bp):
ATAAAGAATAAAAAAC
Found at i:8268362 original size:32 final size:32
Alignment explanation
Indices: 8268321--8268388 Score: 118
Period size: 32 Copynumber: 2.1 Consensus size: 32
8268311 ACTAAAAAAT
*
8268321 AAAACCAAGGCTAAATTTTGGTTAACTTTTGA
1 AAAACCAAGGCTAAATTTAGGTTAACTTTTGA
*
8268353 AAAACCAAGGGTAAATTTAGGTTAACTTTTGA
1 AAAACCAAGGCTAAATTTAGGTTAACTTTTGA
8268385 AAAA
1 AAAA
8268389 AATTGGGAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.43, C:0.10, G:0.16, T:0.31
Consensus pattern (32 bp):
AAAACCAAGGCTAAATTTAGGTTAACTTTTGA
Found at i:8274181 original size:31 final size:31
Alignment explanation
Indices: 8274146--8274221 Score: 152
Period size: 31 Copynumber: 2.5 Consensus size: 31
8274136 GTCACAGGTT
8274146 ACATTTTAGTCACTTACATTATCGTGTTGTA
1 ACATTTTAGTCACTTACATTATCGTGTTGTA
8274177 ACATTTTAGTCACTTACATTATCGTGTTGTA
1 ACATTTTAGTCACTTACATTATCGTGTTGTA
8274208 ACATTTTAGTCACT
1 ACATTTTAGTCACT
8274222 GAGTCATTAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.26, C:0.17, G:0.12, T:0.45
Consensus pattern (31 bp):
ACATTTTAGTCACTTACATTATCGTGTTGTA
Found at i:8275960 original size:18 final size:18
Alignment explanation
Indices: 8275937--8275974 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
8275927 AATATATATT
8275937 AACCCAAGTACCCAACCC
1 AACCCAAGTACCCAACCC
*
8275955 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
8275973 AA
1 AA
8275975 TCATAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.47, G:0.03, T:0.08
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:8275967 original size:13 final size:13
Alignment explanation
Indices: 8275951--8275975 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8275941 CAAGTACCCA
8275951 ACCCAACCCAATT
1 ACCCAACCCAATT
8275964 ACCCAACCCAAT
1 ACCCAACCCAAT
8275976 CATAAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:8276028 original size:20 final size:20
Alignment explanation
Indices: 8276003--8276042 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
8275993 ATTTAATAAA
* *
8276003 TAAAAATCAAAATCAAAAAC
1 TAAAAATAAAAATAAAAAAC
8276023 TAAAAATAAAAATAAAAAAC
1 TAAAAATAAAAATAAAAAAC
8276043 ATATTATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.75, C:0.10, G:0.00, T:0.15
Consensus pattern (20 bp):
TAAAAATAAAAATAAAAAAC
Found at i:8276041 original size:7 final size:6
Alignment explanation
Indices: 8276000--8276040 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
8275990 ATAATTTAAT
*
8276000 AAATAA AAATCA AAATCAA AAACTAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAAT-AA AAA-TAA AAATAA AAATAA AAA
8276041 ACATATTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 21 0.68
7 9 0.29
8 1 0.03
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:8276090 original size:18 final size:17
Alignment explanation
Indices: 8276069--8276127 Score: 55
Period size: 18 Copynumber: 3.3 Consensus size: 17
8276059 ATAATTTGGA
8276069 TAATTCAGTTAATTCGGT
1 TAATTC-GTTAATTCGGT
* * *
8276087 TAATTTCGGTAATTTGGG
1 TAA-TTCGTTAATTCGGT
*
8276105 TAATTCGATTAATTCGAT
1 TAATTCG-TTAATTCGGT
8276123 TAATT
1 TAATT
8276128 TTATACTTAT
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
17 4 0.12
18 25 0.78
19 3 0.09
ACGTcount: A:0.29, C:0.08, G:0.17, T:0.46
Consensus pattern (17 bp):
TAATTCGTTAATTCGGT
Found at i:8276099 original size:27 final size:27
Alignment explanation
Indices: 8276060--8276118 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
8276050 TTTATACAAA
* *
8276060 TAATTTGGATAATTCAGTTAATTCGGT
1 TAATTTGGATAATTCAGGTAATTCGAT
**
8276087 TAATTTCGG-TAATTTGGGTAATTCGAT
1 TAATTT-GGATAATTCAGGTAATTCGAT
8276114 TAATT
1 TAATT
8276119 CGATTAATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 25 0.93
28 2 0.07
ACGTcount: A:0.29, C:0.07, G:0.19, T:0.46
Consensus pattern (27 bp):
TAATTTGGATAATTCAGGTAATTCGAT
Found at i:8276109 original size:36 final size:36
Alignment explanation
Indices: 8276060--8276128 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
8276050 TTTATACAAA
*
8276060 TAATTTGGATAATTC-AGTTAATTCGGTTAATTTCGG
1 TAATTTGGATAATTCGA-TTAATTCGATTAATTTCGG
*
8276096 TAATTTGGGTAATTCGATTAATTCGATTAATTT
1 TAATTTGGATAATTCGATTAATTCGATTAATTT
8276129 TATACTTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
36 29 0.97
37 1 0.03
ACGTcount: A:0.29, C:0.07, G:0.17, T:0.46
Consensus pattern (36 bp):
TAATTTGGATAATTCGATTAATTCGATTAATTTCGG
Found at i:8282489 original size:64 final size:64
Alignment explanation
Indices: 8282388--8282509 Score: 217
Period size: 64 Copynumber: 1.9 Consensus size: 64
8282378 ATTGGAGAGT
* *
8282388 TATAATGCTCTTTTAGTTGACTTCCTACAGAATGGATTAGCTGAAAACAATAGTGTTGCTAAAG
1 TATAATGCTCTTTTAGTTGACATCCTACAAAATGGATTAGCTGAAAACAATAGTGTTGCTAAAG
*
8282452 TATAATGCTCTTTTAGTTGACATCCTGCAAAATGGATTAGCTGAAAACAATAGTGTTG
1 TATAATGCTCTTTTAGTTGACATCCTACAAAATGGATTAGCTGAAAACAATAGTGTTG
8282510 TTGAAGTTAG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 55 1.00
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34
Consensus pattern (64 bp):
TATAATGCTCTTTTAGTTGACATCCTACAAAATGGATTAGCTGAAAACAATAGTGTTGCTAAAG
Found at i:8283636 original size:15 final size:15
Alignment explanation
Indices: 8283618--8283650 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
8283608 ATAGTTTATA
*
8283618 TTAAAATATAAATAT
1 TTAAAATATAAAAAT
8283633 TTAAAATATAAAAAT
1 TTAAAATATAAAAAT
8283648 TTA
1 TTA
8283651 TAATTACATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
TTAAAATATAAAAAT
Found at i:8284815 original size:23 final size:23
Alignment explanation
Indices: 8284784--8284844 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
8284774 AAAAAATCAA
* * *
8284784 TTAAATTAGGGTTTAGGGTTTTT
1 TTAAGTTAGGGTTTAGGATTGTT
**
8284807 TTAAGTTAGGGTTTTTGATTGTT
1 TTAAGTTAGGGTTTAGGATTGTT
8284830 TTAAGATTAGGGTTT
1 TTAAG-TTAGGGTTT
8284845 TTGTATTTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
23 23 0.72
24 9 0.28
ACGTcount: A:0.21, C:0.00, G:0.26, T:0.52
Consensus pattern (23 bp):
TTAAGTTAGGGTTTAGGATTGTT
Found at i:8284857 original size:23 final size:22
Alignment explanation
Indices: 8284803--8284854 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 22
8284793 GGTTTAGGGT
8284803 TTTTTTAAGTTAGGGTTTTTGA
1 TTTTTTAAGTTAGGGTTTTTGA
8284825 TTGTTTTAAGATTAGGGTTTTTGTA
1 TT-TTTTAAG-TTAGGGTTTTTG-A
8284850 TTTTT
1 TTTTT
8284855 AAGGGAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
22 2 0.07
23 7 0.26
24 15 0.56
25 3 0.11
ACGTcount: A:0.17, C:0.00, G:0.21, T:0.62
Consensus pattern (22 bp):
TTTTTTAAGTTAGGGTTTTTGA
Found at i:8284901 original size:140 final size:142
Alignment explanation
Indices: 8284684--8285306 Score: 671
Period size: 140 Copynumber: 4.2 Consensus size: 142
8284674 TAGGGTTATG
* *
8284684 GTTTTAAGGTTTAGGGTTTTAGTGGTTATTAAGGAAAAAATTAATTTAATTAGAGTTGAGGGTTA
1 GTTTTAA-GATTAGGGTTTTAGTGATTATTAAGGAAAAAATTAATTTAATTAGAGTTGAGGGTTA
* *
8284749 ATTAATTAAATTAACTATGAAATTAAAAAAATCAATTAAATTAGGGTTTAGGGTTTTTTTAA-GT
65 ATTAATTAAATTAACTATGAAACTAAAAAAATCAATTAAATTAGGGTTTA-GGATTTTTTAAGGT
8284813 TAGGGTTTTTGATT
129 TAGGGTTTTTGATT
* * *
8284827 GTTTTAAGATTAGGGTTTTTGT-ATTTTTAAGGGAAAAATTAATTT-ATTAGAGTTGAGGGTTAA
1 GTTTTAAGATTAGGGTTTTAGTGATTATTAAGGAAAAAATTAATTTAATTAGAGTTGAGGGTTAA
8284890 TTAATTAAATTAACTATGAAACTAAAAAAATCAATTAAATTAGGGTTTAGGATTTTTTAAGGTTA
66 TTAATTAAATTAACTATGAAACTAAAAAAATCAATTAAATTAGGGTTTAGGATTTTTTAAGGTTA
*
8284955 GGGTTTTTTATT
131 GGGTTTTTGATT
* * *
8284967 ATTTTAAGATTAGGGTTTTAATGGTTTAGGGTTTTAGTATTTTTTAAGG-GAAAATTAATTTAAT
1 GTTTTAAGATTAGGG------T--TTTA--G---T-G-A-TTATTAAGGAAAAAATTAATTTAAT
* *
8285031 TAGAGTTAAGGGTTAATTTTAAATTAAATTAACTATGAAAATAAAAAAATCAATTAAATTAGGGT
50 TAGAGTTGAGGGTTAA--TT-AATTAAATTAACTATGAAACTAAAAAAATCAATTAAATTAGGGT
8285096 TTAGGATTTTTTAAGGTTAGGGTTTTTTATTGTTTTAGGATT
112 TTAGGATTTTTTAAGGTTAGGG--------T-TTTT--GATT
* * * * *
8285138 AGGGTTTTAATAGTTTAGGGTTTTAGTGTTTGTTAAGGGAAAAATTAATTTAATTAGAGTTGATG
1 ---GTTTT-A-AGATTAGGGTTTTAGTGATTATTAAGGAAAAAATTAATTTAATTAGAGTTGAGG
*
8285203 GTTAATTAATTAAATTAACTATGAAACTAAAAAAATCAATTAAATTAGGGTTTAGG-GTTTTTAA
61 GTTAATTAATTAAATTAACTATGAAACTAAAAAAATCAATTAAATTAGGGTTTAGGATTTTTTAA
* * *
8285267 GATTAAGATTTTTGATT
126 GGTTAGGGTTTTTGATT
*
8285284 GTTTTAAGATTAGGGTTTCAGTG
1 GTTTTAAGATTAGGGTTTTAGTG
8285307 GTTTAGGGTT
Statistics
Matches: 413, Mismatches: 28, Indels: 80
0.79 0.05 0.15
Matches are distributed among these distances:
139 10 0.02
140 95 0.23
141 35 0.08
142 14 0.03
143 12 0.03
146 5 0.01
148 7 0.02
149 1 0.00
150 1 0.00
153 1 0.00
156 12 0.03
157 38 0.09
158 48 0.12
159 4 0.01
160 73 0.18
161 28 0.07
162 1 0.00
163 1 0.00
166 1 0.00
168 5 0.01
169 4 0.01
170 1 0.00
171 3 0.01
174 4 0.01
175 1 0.00
176 8 0.02
ACGTcount: A:0.35, C:0.02, G:0.20, T:0.43
Consensus pattern (142 bp):
GTTTTAAGATTAGGGTTTTAGTGATTATTAAGGAAAAAATTAATTTAATTAGAGTTGAGGGTTAA
TTAATTAAATTAACTATGAAACTAAAAAAATCAATTAAATTAGGGTTTAGGATTTTTTAAGGTTA
GGGTTTTTGATT
Found at i:8284955 original size:23 final size:24
Alignment explanation
Indices: 8284924--8284984 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
8284914 AAAAAATCAA
8284924 TTAA-ATTAGGGTTTAGGATT-TT
1 TTAAGATTAGGGTTTAGGATTATT
* ***
8284946 TTAAGGTTAGGGTTTTTTATTATT
1 TTAAGATTAGGGTTTAGGATTATT
8284970 TTAAGATTAGGGTTT
1 TTAAGATTAGGGTTT
8284985 TAATGGTTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
22 4 0.12
23 12 0.38
24 16 0.50
ACGTcount: A:0.25, C:0.00, G:0.23, T:0.52
Consensus pattern (24 bp):
TTAAGATTAGGGTTTAGGATTATT
Found at i:8284963 original size:157 final size:155
Alignment explanation
Indices: 8284827--8285745 Score: 1102
Period size: 160 Copynumber: 5.8 Consensus size: 155
8284817 GTTTTTGATT
* *
8284827 GTTTTA-AGATTAGGGTTTTTGTATTTTTAAGGGAAAAATTAATTT-ATTAGAGTTGAGGGTTAA
1 GTTTTAGAGTTTAGGGTTTTAGTATTTTTAAGGGAAAAATTAATTTAATTAGAGTTGAGGGTTAA
*
8284890 TTAATTAAATTAACTATGAAACTAAAAAAATCAATTAAATTAGGGTTTAGGATTTTTTAAGGTTA
66 TTAATTAAATTAACTATGAAAATAAAAAAATCAATTAAATTAGGGTTTAGGATTTTTTAAGGTTA
** *
8284955 GGGTTTTTTATTATTTTAAGATTAGG
131 GGGTTTTTT-TTAAGTTAGGATTAGG
*
8284981 GTTTTA-ATGGTTTAGGGTTTTAGTATTTTTTAAGGG-AAAATTAATTTAATTAGAGTTAAGGGT
1 GTTTTAGA--GTTTAGGGTTTTAGTA-TTTTTAAGGGAAAAATTAATTTAATTAGAGTTGAGGGT
8285044 TAATTTTAAATTAAATTAACTATGAAAATAAAAAAATCAATTAAATTAGGGTTTAGGATTTTTTA
63 TAA--TT-AATTAAATTAACTATGAAAATAAAAAAATCAATTAAATTAGGGTTTAGGATTTTTTA
***
8285109 AGGTTAGGGTTTTTTATTGTTTTAGGATTAGG
125 AGGTTAGGGTTTTTT-TTAAGTTAGGATTAGG
* * *
8285141 GTTTTAATAGTTTAGGGTTTTAGTGTTTGTTAAGGGAAAAATTAATTTAATTAGAGTTGATGGTT
1 GTTTT-AGAGTTTAGGGTTTTAGTATTT-TTAAGGGAAAAATTAATTTAATTAGAGTTGAGGGTT
* * *
8285206 AATTAATTAAATTAACTATGAAACTAAAAAAATCAATTAAATTAGGGTTTAGG-GTTTTTAAGAT
64 AATTAATTAAATTAACTATGAAAATAAAAAAATCAATTAAATTAGGGTTTAGGATTTTTTAAGGT
** *
8285270 TAAGATTTTTGATTGTTTTAAGATTAGGGTTTCAGTG
129 T-AG--GGTT--TT-TTTTAAG-TTA-GGATT-AG-G
* * *
8285307 G-TTTAGGGTTTTAGTGTTTTAGTATTTTTTCAGGGAAAAATTAATTTAATTAGAGTTGAGGGTT
1 GTTTTAGAG-TTTAGGGTTTTAGTA-TTTTTAAGGGAAAAATTAATTTAATTAGAGTTGAGGGTT
* *
8285371 AATAAATTAAATTAACTATGAAAAT-AAAAAATCAATTAAATTAGGGTTTAGGGTTTTTTAA-GT
64 AATTAATTAAATTAACTATGAAAATAAAAAAATCAATTAAATTAGGGTTTAGGATTTTTTAAGGT
* ***
8285434 TAGGGTTTTTGATTGTTTTAGGATTAGG
129 TAGGGTTTTT-TTTAAGTTAGGATTAGG
* * *
8285462 GTTTTAGTGGTTTAGGGCTTTAGTGTTTTTTAA-GG-AAAATTAATTTAATTAGAGTTGAGGGTT
1 GTTTTAG-AGTTTAGGGTTTTAGT-ATTTTTAAGGGAAAAATTAATTTAATTAGAGTTGAGGGTT
** *
8285525 AATTAATTAAATTAACTATGAAAATAAAAAAAATCAATTAAATTAATGTTTAGGGTTTTTTAAGG
64 AATTAATTAAATTAACTATGAAAAT-AAAAAAATCAATTAAATTAGGGTTTAGGATTTTTTAAGG
* * *** *
8285590 TTAAGGTTTTTGATTGTTTTAAGATTAGG
128 TTAGGGTTTTT-TTTAAGTTAGGATTAGG
* *
8285619 GTTTTAGTGGTTTAGGGTTTTAGTGTTTTTTAAGGGAAAAATTAATTTAATTAGAGTTGAGGGTT
1 GTTTTAG-AGTTTAGGGTTTTAGT-ATTTTTAAGGGAAAAATTAATTTAATTAGAGTTGAGGGTT
* *
8285684 AATTAATTAAATTAACTATGAAATTAAAAAAAATTAATTAAATTAGGGTTTAGGATTTTTTA
64 AATTAATTAAATTAACTATGAAAAT-AAAAAAATCAATTAAATTAGGGTTTAGGATTTTTTA
8285746 GGATTTATTA
Statistics
Matches: 682, Mismatches: 50, Indels: 61
0.86 0.06 0.08
Matches are distributed among these distances:
154 59 0.09
155 4 0.01
156 84 0.12
157 103 0.15
158 56 0.08
159 96 0.14
160 115 0.17
161 31 0.05
162 5 0.01
163 7 0.01
164 35 0.05
165 82 0.12
166 5 0.01
ACGTcount: A:0.35, C:0.02, G:0.20, T:0.43
Consensus pattern (155 bp):
GTTTTAGAGTTTAGGGTTTTAGTATTTTTAAGGGAAAAATTAATTTAATTAGAGTTGAGGGTTAA
TTAATTAAATTAACTATGAAAATAAAAAAATCAATTAAATTAGGGTTTAGGATTTTTTAAGGTTA
GGGTTTTTTTTAAGTTAGGATTAGG
Found at i:8285153 original size:23 final size:24
Alignment explanation
Indices: 8285104--8285153 Score: 59
Period size: 23 Copynumber: 2.1 Consensus size: 24
8285094 GTTTAGGATT
* *
8285104 TTTTAAGGTTAGGGTTTTTTATTG
1 TTTTAAGGTTAGGGTTTTTAATAG
8285128 TTTT-AGGATTAGGG-TTTTAATAG
1 TTTTAAGG-TTAGGGTTTTTAATAG
8285151 TTT
1 TTT
8285154 AGGGTTTTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 13 0.57
24 10 0.43
ACGTcount: A:0.20, C:0.00, G:0.24, T:0.56
Consensus pattern (24 bp):
TTTTAAGGTTAGGGTTTTTAATAG
Found at i:8285314 original size:16 final size:16
Alignment explanation
Indices: 8285293--8285328 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
8285283 TGTTTTAAGA
8285293 TTAGGGTTTCAGTGGT
1 TTAGGGTTTCAGTGGT
* *
8285309 TTAGGGTTTTAGTGTT
1 TTAGGGTTTCAGTGGT
8285325 TTAG
1 TTAG
8285329 TATTTTTTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.14, C:0.03, G:0.33, T:0.50
Consensus pattern (16 bp):
TTAGGGTTTCAGTGGT
Found at i:8285364 original size:165 final size:160
Alignment explanation
Indices: 8284844--8285743 Score: 1278
Period size: 157 Copynumber: 5.6 Consensus size: 160
8284834 GATTAGGGTT
8284844 TTTGTATTTTTAAGGGAAAAATTAATTT-ATTAGAGTTGAGGGTTAATTAATTAAATTAACTATG
1 TTTGT-TTTTTAAGGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATTAAATTAACTATG
* * * *
8284908 AAACTAAAAAAATCAATTAAATTAGGGTTTAGGATTTTTTAAGGTTAGGGTTTTTTATTATTTTA
65 AAAATAAAAAAATCAATTAAATTAGGGTTTAGG-GTTTTTAAGGTTAGGGTTTTTGATTGTTTTA
*
8284973 AGATTAGGGTTTTAATGGTTTAGGGTTTTA-G
129 AGATTAGGGTTTTAGTGGTTTAGGGTTTTAGG
* *
8285004 --TATTTTTTAAGGG-AAAATTAATTTAATTAGAGTTAAGGGTTAATTTTAAATTAAATTAACTA
1 TTTGTTTTTTAAGGGAAAAATTAATTTAATTAGAGTTGAGGGTTAA--TT-AATTAAATTAACTA
* *
8285066 TGAAAATAAAAAAATCAATTAAATTAGGGTTTAGGATTTTTTAAGGTTAGGGTTTTTTATTGTTT
63 TGAAAATAAAAAAATCAATTAAATTAGGGTTTAGG-GTTTTTAAGGTTAGGGTTTTTGATTGTTT
* * *
8285131 TAGGATTAGGGTTTTAATAGTTTAGGGTTTTA-G
127 TAAGATTAGGGTTTTAGTGGTTTAGGGTTTTAGG
* *
8285164 --TGTTTGTTAAGGGAAAAATTAATTTAATTAGAGTTGATGGTTAATTAATTAAATTAACTATGA
1 TTTGTTTTTTAAGGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATTAAATTAACTATGA
* * * *
8285227 AACTAAAAAAATCAATTAAATTAGGGTTTAGGGTTTTTAAGATTAAGATTTTTGATTGTTTTAAG
66 AAATAAAAAAATCAATTAAATTAGGGTTTAGGGTTTTTAAGGTTAGGGTTTTTGATTGTTTTAAG
*
8285292 ATTAGGGTTTCAGTGGTTTAGGGTTTTAGTG
131 ATTAGGGTTTTAGTGGTTTAGGGTTTTAG-G
* *
8285323 TTTTAGTATTTTTTCAGGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATAAATTAAATTAACT
1 -TTT-G--TTTTTTAAGGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATTAAATTAACT
8285388 ATGAAAAT-AAAAAATCAATTAAATTAGGGTTTAGGGTTTTTTAA-GTTAGGGTTTTTGATTGTT
62 ATGAAAATAAAAAAATCAATTAAATTAGGGTTTAGGG-TTTTTAAGGTTAGGGTTTTTGATTGTT
* *
8285451 TTAGGATTAGGGTTTTAGTGGTTTAGGGCTTTA-G
126 TTAAGATTAGGGTTTTAGTGGTTTAGGGTTTTAGG
8285485 --TGTTTTTTAA-GG-AAAATTAATTTAATTAGAGTTGAGGGTTAATTAATTAAATTAACTATGA
1 TTTGTTTTTTAAGGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATTAAATTAACTATGA
** *
8285546 AAATAAAAAAAATCAATTAAATTAATGTTTAGGGTTTTTTAAGGTTAAGGTTTTTGATTGTTTTA
66 AAAT-AAAAAAATCAATTAAATTAGGGTTTAGGG-TTTTTAAGGTTAGGGTTTTTGATTGTTTTA
8285611 AGATTAGGGTTTTAGTGGTTTAGGGTTTTA-G
129 AGATTAGGGTTTTAGTGGTTTAGGGTTTTAGG
8285642 --TGTTTTTTAAGGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATTAAATTAACTATGA
1 TTTGTTTTTTAAGGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATTAAATTAACTATGA
* * *
8285705 AATTAAAAAAAATTAATTAAATTAGGGTTTAGGATTTTT
66 AAAT-AAAAAAATCAATTAAATTAGGGTTTAGGGTTTTT
8285744 TAGGATTTAT
Statistics
Matches: 678, Mismatches: 43, Indels: 40
0.89 0.06 0.05
Matches are distributed among these distances:
154 52 0.08
155 2 0.00
156 52 0.08
157 139 0.21
158 58 0.09
159 84 0.12
160 119 0.18
161 28 0.04
162 2 0.00
163 1 0.00
164 74 0.11
165 67 0.10
ACGTcount: A:0.35, C:0.02, G:0.20, T:0.43
Consensus pattern (160 bp):
TTTGTTTTTTAAGGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATTAAATTAACTATGA
AAATAAAAAAATCAATTAAATTAGGGTTTAGGGTTTTTAAGGTTAGGGTTTTTGATTGTTTTAAG
ATTAGGGTTTTAGTGGTTTAGGGTTTTAGG
Found at i:8285631 original size:23 final size:24
Alignment explanation
Indices: 8285582--8285631 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
8285572 GTTTAGGGTT
* * *
8285582 TTTTAAGGTTAAGGTTTTTGATTG
1 TTTTAAGATTAAGGTTTTAGATGG
*
8285606 TTTTAAGATTAGGGTTTTAG-TGG
1 TTTTAAGATTAAGGTTTTAGATGG
8285629 TTT
1 TTT
8285632 AGGGTTTTAG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
23 5 0.23
24 17 0.77
ACGTcount: A:0.20, C:0.00, G:0.26, T:0.54
Consensus pattern (24 bp):
TTTTAAGATTAAGGTTTTAGATGG
Found at i:8285714 original size:478 final size:481
Alignment explanation
Indices: 8284836--8285743 Score: 1504
Period size: 478 Copynumber: 1.9 Consensus size: 481
8284826 TGTTTTAAGA
* *
8284836 TTAGGGTTTTTGTATTTTTAAGGGAAAAATTAATTTATTAGAGTTGAGGGTTAATTAATTAAATT
1 TTAGGGTTTTAGTATTTTTAAGGGAAAAATTAATTTATTAGAGTTGAGGGTTAATAAATTAAATT
* *
8284901 AACTATGAAACTAAAAAAATCAATTAAATTAGGGTTTAGGATTTTTTAAGGTTAGGGTTTTTTAT
66 AACTATGAAAATAAAAAAATCAATTAAATTAGGGTTTAGGATTTTTTAAGGTTAGGGTTTTTGAT
*
8284966 TATTTTAAGATTAGGGTTTTAATGGTTTAGGGTTTTAGTATTTTTTAAGGGAAAATTAATTTAAT
131 TATTTTAAGATTAGGGTTTTAATGGTTTAGGGCTTTAGTATTTTTTAAGGGAAAATTAATTTAAT
*
8285031 TAGAGTTAAGGGTTAATTTTAAATTAAATTAACTATGAAAATAAAAAAATCAATTAAATTAGGGT
196 TAGAGTTAAGGGTTAA-TTTAAATTAAATTAACTATGAAAATAAAAAAATCAATTAAATTAAGGT
* * *
8285096 TTAGGATTTTTTAAGGTTAGGGTTTTTTATTGTTTTAGGATTAGGGTTTTAATAGTTTAGGGTTT
260 TTAGGATTTTTTAAGGTTAAGGTTTTTGATTGTTTTAAGATTAGGGTTTTAATAGTTTAGGGTTT
*
8285161 TAGTGTTTGTTAAGGGAAAAATTAATTTAATTAGAGTTGATGGTTAATTAATTAAATTAACTATG
325 TAGTGTTTGTTAAGGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATTAAATTAACTATG
*
8285226 AAACT-AAAAAAATCAATTAAATTAGGGTTTAGGGTTTTTAAGATTAAGATTTTTGATTGTTTTA
390 AAACTAAAAAAAATCAATTAAATTAGGGTTTAGGATTTTTAAGATTAAGATTTTTGATTGTTTTA
8285290 AGATTAGGGTTTCAGTGGTTTAGGGTT
455 AGATTAGGGTTTCAGTGGTTTAGGGTT
* *
8285317 TTAGTGTTTTAGTATTTTTTCAGGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATAAATTAAA
1 TTAGGGTTTTAGTA-TTTTTAAGGGAAAAATTAATTT-ATTAGAGTTGAGGGTTAATAAATTAAA
*
8285382 TTAACTATGAAAAT-AAAAAATCAATTAAATTAGGGTTTAGGGTTTTTTAA-GTTAGGGTTTTTG
64 TTAACTATGAAAATAAAAAAATCAATTAAATTAGGGTTTAGGATTTTTTAAGGTTAGGGTTTTTG
* * * *
8285445 ATTGTTTTAGGATTAGGGTTTTAGTGGTTTAGGGCTTTAGTGTTTTTTAA-GGAAAATTAATTTA
129 ATTATTTTAAGATTAGGGTTTTAATGGTTTAGGGCTTTAGTATTTTTTAAGGGAAAATTAATTTA
* *
8285509 ATTAGAGTTGAGGGTTAA-TT-AATTAAATTAACTATGAAAATAAAAAAAATCAATTAAATTAAT
194 ATTAGAGTTAAGGGTTAATTTAAATTAAATTAACTATGAAAAT-AAAAAAATCAATTAAATTAAG
* * *
8285572 GTTTAGGGTTTTTTAAGGTTAAGGTTTTTGATTGTTTTAAGATTAGGGTTTTAGTGGTTTAGGGT
258 GTTTAGGATTTTTTAAGGTTAAGGTTTTTGATTGTTTTAAGATTAGGGTTTTAATAGTTTAGGGT
*
8285637 TTTAGTGTTTTTTAAGGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATTAAATTAACTA
323 TTTAGTGTTTGTTAAGGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATTAAATTAACTA
* *
8285702 TGAAATTAAAAAAAATTAATTAAATTAGGGTTTAGGATTTTT
388 TGAAACTAAAAAAAATCAATTAAATTAGGGTTTAGGATTTTT
8285744 TAGGATTTAT
Statistics
Matches: 397, Mismatches: 26, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
477 21 0.05
478 149 0.38
479 32 0.08
480 31 0.08
481 69 0.17
482 56 0.14
483 39 0.10
ACGTcount: A:0.35, C:0.02, G:0.20, T:0.43
Consensus pattern (481 bp):
TTAGGGTTTTAGTATTTTTAAGGGAAAAATTAATTTATTAGAGTTGAGGGTTAATAAATTAAATT
AACTATGAAAATAAAAAAATCAATTAAATTAGGGTTTAGGATTTTTTAAGGTTAGGGTTTTTGAT
TATTTTAAGATTAGGGTTTTAATGGTTTAGGGCTTTAGTATTTTTTAAGGGAAAATTAATTTAAT
TAGAGTTAAGGGTTAATTTAAATTAAATTAACTATGAAAATAAAAAAATCAATTAAATTAAGGTT
TAGGATTTTTTAAGGTTAAGGTTTTTGATTGTTTTAAGATTAGGGTTTTAATAGTTTAGGGTTTT
AGTGTTTGTTAAGGGAAAAATTAATTTAATTAGAGTTGAGGGTTAATTAATTAAATTAACTATGA
AACTAAAAAAAATCAATTAAATTAGGGTTTAGGATTTTTAAGATTAAGATTTTTGATTGTTTTAA
GATTAGGGTTTCAGTGGTTTAGGGTT
Found at i:8285929 original size:126 final size:126
Alignment explanation
Indices: 8285771--8286069 Score: 494
Period size: 125 Copynumber: 2.4 Consensus size: 126
8285761 ATTTACTATT
8285771 AATTACGG-AAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCAGAAAAAATAAAATT
1 AATTACGGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCAGAAAAAATAAAATT
* *
8285835 GAGAAGATGTTTTTGAATAAATAATGTCAAAAACGCTTCAAGAAGGATGCACTGTCAGCAA
66 GAGAAGATGTTTCTGAACAAATAATGTCAAAAACGCTTCAAGAAGGATGCACTGTCAGCAA
* * * * *
8285896 AATTACGGAAAAAAGCTCCCACGTGGACGCTCTTTTACTA-TGTAGTATCTGATAAAATAAATTT
1 AATTACGGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCAGAAAAAATAAAATT
*
8285960 GAGAAGATGTTTCTGAACAAATAATGTCAAAAACGCTTCAAGAAGGATGCACTGTTAGCAA
66 GAGAAGATGTTTCTGAACAAATAATGTCAAAAACGCTTCAAGAAGGATGCACTGTCAGCAA
* *
8286021 AATTGCGGAAAAAAGCTCCCACGTGGACTCTCTTTTGCTACAGTAGTAT
1 AATTACGGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTAT
8286070 TTGAAAAAGC
Statistics
Matches: 160, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
125 123 0.77
126 37 0.23
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.26
Consensus pattern (126 bp):
AATTACGGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTATCAGAAAAAATAAAATT
GAGAAGATGTTTCTGAACAAATAATGTCAAAAACGCTTCAAGAAGGATGCACTGTCAGCAA
Found at i:8290616 original size:49 final size:49
Alignment explanation
Indices: 8290561--8291586 Score: 1743
Period size: 49 Copynumber: 21.2 Consensus size: 49
8290551 AATTCTAAAT
*
8290561 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
8290610 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
8290659 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
8290708 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
8290757 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
8290806 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
8290855 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
8290904 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
8290953 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
8291002 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
8291051 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
** *
8291100 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAAAGTGTATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
* *
8291149 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
*
8291196 CGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
*
8291245 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATATG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
* * *
8291292 TGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
*
8291341 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATATG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
* * *
8291388 TGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
*
8291437 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATATG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
*
8291484 CGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
* * ** * * * *
8291531 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATA-A-A
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
8291578 TGTGATAAG
1 TGTGATAAG
8291587 TCCCGAAGGA
Statistics
Matches: 928, Mismatches: 41, Indels: 18
0.94 0.04 0.02
Matches are distributed among these distances:
47 221 0.24
48 1 0.00
49 706 0.76
ACGTcount: A:0.32, C:0.07, G:0.29, T:0.31
Consensus pattern (49 bp):
TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
Found at i:8293395 original size:27 final size:27
Alignment explanation
Indices: 8293357--8293753 Score: 463
Period size: 27 Copynumber: 14.7 Consensus size: 27
8293347 TTACTTTACC
* *
8293357 AAATTACCAAAACACCCTTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
**
8293384 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
***
8293411 AAATTACCAAAATACCCCCAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* **
8293438 AAATTACTAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
8293465 AAATCACTAAAATACCAC-TGGTTTGTA
1 AAATTACCAAAATACC-CTTGGTTTGTA
* **
8293492 AAATTACTAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
8293519 AAATTACCAAAAATACCCTTGGTTTGTA
1 AAATTACC-AAAATACCCTTGGTTTGTA
* * *
8293547 AAATTACTATAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
8293574 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
**
8293601 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
8293628 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
8293655 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
8293682 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * * *
8293709 AGATTACCAAAATACCCCTGATTTGTT
1 AAATTACCAAAATACCCTTGGTTTGTA
**
8293736 AAATTACTGAAATACCCT
1 AAATTACCAAAATACCCT
8293754 CGACCTATAA
Statistics
Matches: 312, Mismatches: 55, Indels: 6
0.84 0.15 0.02
Matches are distributed among these distances:
26 1 0.00
27 286 0.92
28 25 0.08
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTGTA
Found at i:8293495 original size:81 final size:80
Alignment explanation
Indices: 8293357--8293806 Score: 461
Period size: 81 Copynumber: 5.5 Consensus size: 80
8293347 TTACTTTACC
* * ** *
8293357 AAATTACCAAAACACCCTTAGTTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAA
1 AAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCC-TGGTTTGTAAAATTACTAAA
** *
8293422 ATACCCCCAGTTTGTA
65 ATACCCCTGGTTTATA
* ** * *
8293438 AAATTACTAAAATACCCTTGGTTTACAAAATCACTAAAATACCACTGGTTTGTAAAATTACTAAA
1 AAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACC-CTGGTTTGTAAAATTACTAAA
* *
8293503 ATACCCTTGGTTTACA
65 ATACCCCTGGTTTATA
* * * * *
8293519 AAATTACCAAAAATACCCTTGGTTTGTAAAATTACTATAATACCCTTGGTTTATAAAATCACCAA
1 AAATTACC-AAAATACCCTTGGTTTGTAAAATTACCAAAATACCC-TGGTTTGTAAAATTACTAA
*
8293584 AATACCCCTGGTTTGTA
64 AATACCCCTGGTTTATA
** *
8293601 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAA
1 AAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATA-CCCTGGTTTGTAAAATTACTAAA
* *
8293666 ATACCCTTTGTTTATA
65 ATACCCCTGGTTTATA
* * * * *
8293682 AAATTACCAAAATACCCCTGGTTTGTAAGATTACCAAAATACCCCTGATTTGTTAAATTACTGAA
1 AAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATA-CCCTGGTTTGTAAAATTACTAAA
***
8293747 ATA-CCCTCGACCTATA
65 ATACCCCT-GGTTTATA
*** * ** *
8293763 AAATTATTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCC
1 AAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCC
8293807 CTAATTTACA
Statistics
Matches: 305, Mismatches: 59, Indels: 11
0.81 0.16 0.03
Matches are distributed among these distances:
80 6 0.02
81 226 0.74
82 73 0.24
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (80 bp):
AAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTGGTTTGTAAAATTACTAAAA
TACCCCTGGTTTATA
Found at i:8293752 original size:54 final size:54
Alignment explanation
Indices: 8293351--8293725 Score: 561
Period size: 54 Copynumber: 6.9 Consensus size: 54
8293341 AATACTTTAC
* * * * *
8293351 TTTACCAAATTACCAAAACACCCTTAGTTTGTAAAATTACCAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGG
**
8293405 TTTACAAAATTACCAAAATACCCCCAGTTTGTAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGG
* * *
8293459 TTTACAAAATCACTAAAATACCACTGGTTTGTAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGG
* *
8293513 TTTACAAAATTACCAAAAATACCCTTGGTTTGTAAAATTACTATAATACCCTTGG
1 TTTACAAAATTACC-AAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGG
* * *
8293568 TTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGG
* *
8293622 TTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTTG
1 TTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGG
* * *
8293676 TTTATAAAATTACCAAAATACCCCTGGTTTGTAAGATTACCAAAATACCC
1 TTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCC
8293726 CTGATTTGTT
Statistics
Matches: 291, Mismatches: 29, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
54 242 0.83
55 49 0.17
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (54 bp):
TTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGG
Found at i:8293805 original size:27 final size:27
Alignment explanation
Indices: 8293357--8293806 Score: 313
Period size: 27 Copynumber: 16.6 Consensus size: 27
8293347 TTACTTTACC
* *
8293357 AAATTACCAAAACACCCT-TAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* * **
8293384 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
*
8293411 AAATTACCAAAATACCC-CCAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* * * **
8293438 AAATTACTAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
8293465 AAATCACTAAAATACCACT-GGTTTGTA
1 AAATTACCAAAATACC-CTCGATTTGTA
* * * **
8293492 AAATTACTAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
8293519 AAATTACCAAAAATACCCTTGGTTTGTA
1 AAATTACC-AAAATACCCTCGATTTGTA
* * * * *
8293547 AAATTACTATAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
8293574 AAATCACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * **
8293601 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
*
8293628 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* * *
8293655 AAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCC-TCGATTTGTA
*
8293682 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* *
8293709 AGATTACCAAAATACCC-CTGATTTGTT
1 AAATTACCAAAATACCCTC-GATTTGTA
** ** *
8293736 AAATTACTGAAATACCCTCGACCTATA
1 AAATTACCAAAATACCCTCGATTTGTA
*** *
8293763 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*
8293790 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
8293807 CTAATTTACA
Statistics
Matches: 343, Mismatches: 66, Indels: 28
0.78 0.15 0.06
Matches are distributed among these distances:
26 3 0.01
27 313 0.91
28 27 0.08
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:8293822 original size:81 final size:81
Alignment explanation
Indices: 8293627--8293861 Score: 190
Period size: 81 Copynumber: 2.9 Consensus size: 81
8293617 CTTGGTTTAC
* ** * ** * *
8293627 AAAATTACCAAAATACCCCTAGTTTGTA-AAATTACTAAAATACCCTTTG-TTTATAAAATTACC
1 AAAATTACCAAAATACCCCTAATTTG-ACAAATTACCGAAATACCC-TCGACCTACAAAATTACT
* **
8293690 AAAATACCC-CTGGTTTGT
64 GAAATACCCTC-GACTTGT
* * ** * * *
8293708 AAGATTACCAAAATACCCCTGATTTGTTAAATTACTGAAATACCCTCGACCTATAAAATTATTGA
1 AAAATTACCAAAATACCCCTAATTTGACAAATTACCGAAATACCCTCGACCTACAAAATTACTGA
8293773 AATACCCTCGACTTGT
66 AATACCCTCGACTTGT
* *** **
8293789 AAAATTACCAAAGTACCCCTAATTT-ACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTG
1 AAAATTACCAAAATACCCCTAATTTGACA-AATTACCGAAATACCCTCGACCTACAAAATTACTG
8293853 AAATACCCT
65 AAATACCCT
8293862 TGTAGGGTAG
Statistics
Matches: 124, Mismatches: 26, Indels: 8
0.78 0.16 0.05
Matches are distributed among these distances:
80 3 0.02
81 120 0.97
82 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.08, T:0.31
Consensus pattern (81 bp):
AAAATTACCAAAATACCCCTAATTTGACAAATTACCGAAATACCCTCGACCTACAAAATTACTGA
AATACCCTCGACTTGT
Found at i:8293965 original size:27 final size:27
Alignment explanation
Indices: 8293845--8293957 Score: 181
Period size: 27 Copynumber: 4.2 Consensus size: 27
8293835 CGATTTACAA
* *
8293845 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
8293872 AAATATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
8293899 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
8293926 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
8293953 AATTA
1 AATTA
8293958 TCGTAATAAC
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 79 1.00
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:8294039 original size:26 final size:27
Alignment explanation
Indices: 8293970--8294049 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 27
8293960 GTAATAACCG
* *
8293970 AAATACCCTTGTAGAGTAGAATTACTA
1 AAATACCCTTGTAGGGTAGAATTACCA
*
8293997 AAATACCCTTGTAGGGTGGAATTACCA
1 AAATACCCTTGTAGGGTAGAATTACCA
* * *
8294024 AGATA-CCTTGTGGGGTAAAATTACCA
1 AAATACCCTTGTAGGGTAGAATTACCA
8294050 TTTTGCCCTT
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
26 18 0.39
27 28 0.61
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAATTACCA
Found at i:8294539 original size:22 final size:22
Alignment explanation
Indices: 8294475--8294539 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
8294465 TTAAAGCCTT
*
8294475 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTTTGTGCCAAC
* *
8294497 CT-ACATATGGCTTTGTTCCAAC
1 CTGA-TTATGGCTTTGTGCCAAC
8294519 CTGATTATGG-TTGTGTGCCAA
1 CTGATTATGGCTT-TGTGCCAA
8294540 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
21 3 0.09
22 31 0.89
23 1 0.03
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.38
Consensus pattern (22 bp):
CTGATTATGGCTTTGTGCCAAC
Found at i:8294728 original size:27 final size:27
Alignment explanation
Indices: 8294698--8294799 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
8294688 ATTTTGTTAA
* *
8294698 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
8294725 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
8294752 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
8294779 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
8294800 ATAACTGAGC
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 8 0.12
27 52 0.78
28 7 0.10
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:8294975 original size:6 final size:6
Alignment explanation
Indices: 8294936--8295083 Score: 81
Period size: 6 Copynumber: 23.8 Consensus size: 6
8294926 TTGCATTCAC
* *
8294936 ATTCTG ATTTTTG ATTCTG -TTACCTG ATAT-TG ATTCTG ATTTTG ATTC-G
1 ATTCTG A-TTCTG ATTCTG ATT--CTG AT-TCTG ATTCTG ATTCTG ATTCTG
* * * * * *
8294985 GTTACCTG ATACTG ATTCTG GTTTTG ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
8295036 ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
8295084 AGTTCTGACA
Statistics
Matches: 107, Mismatches: 20, Indels: 30
0.68 0.13 0.19
Matches are distributed among these distances:
5 8 0.07
6 80 0.75
7 13 0.12
8 5 0.05
9 1 0.01
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:8294982 original size:31 final size:31
Alignment explanation
Indices: 8294936--8295038 Score: 136
Period size: 31 Copynumber: 3.3 Consensus size: 31
8294926 TTGCATTCAC
8294936 ATTCTGATTTTTGATTCTGTTACCTGATATTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATATTG
* *
8294968 ATTCTGATTTTGATTCGGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATATTG
* * *
8294999 ATTCTGGTTTTGATTCTGTCACCTAAT-TCTG
1 ATTCTGATTTTGATTCTGTTACCTGATAT-TG
8295030 ATTCTGATT
1 ATTCTGATT
8295039 CTGTCACCTA
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
31 55 0.89
32 7 0.11
ACGTcount: A:0.18, C:0.16, G:0.17, T:0.50
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATATTG
Found at i:8294994 original size:25 final size:25
Alignment explanation
Indices: 8294966--8295064 Score: 81
Period size: 25 Copynumber: 3.7 Consensus size: 25
8294956 TACCTGATAT
* *
8294966 TGATTCTGATTTTGATTCGGTTACC
1 TGATTCTGATTCTGATTCGGTCACC
* *
8294991 TGATACTGATTCTGGTTTTGATTCTGTCACC
1 TGATTCTGATTC------TGATTCGGTCACC
* *
8295022 TAATTCTGATTCTGATTCTGTCACC
1 TGATTCTGATTCTGATTCGGTCACC
*
8295047 TAATTCTGATTCTGATTC
1 TGATTCTGATTCTGATTC
8295065 TGATTCTGAT
Statistics
Matches: 62, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
25 41 0.66
31 21 0.34
ACGTcount: A:0.18, C:0.19, G:0.16, T:0.46
Consensus pattern (25 bp):
TGATTCTGATTCTGATTCGGTCACC
Found at i:8295059 original size:31 final size:30
Alignment explanation
Indices: 8294936--8295072 Score: 131
Period size: 31 Copynumber: 4.6 Consensus size: 30
8294926 TTGCATTCAC
*
8294936 ATTCTGATTTTTGATTCTGTTACCTGATATTG
1 ATTCTGA-TTTTGATTCTGTCACCTGAT-TTG
* * *
8294968 ATTCTGATTTTGATTCGGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTCACCTGAT-TTG
*
8294999 ATTCTGGTTTTGATTCTGTCACCT-A----
1 ATTCTGATTTTGATTCTGTCACCTGATTTG
* *
8295024 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTTTGATTCTGTCACCTGATT-TG
*
8295055 ATTCTGATTCTGATTCTG
1 ATTCTGATTTTGATTCTG
8295073 ATTCTGATTC
Statistics
Matches: 92, Mismatches: 7, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
25 22 0.24
26 1 0.01
30 1 0.01
31 61 0.66
32 7 0.08
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.48
Consensus pattern (30 bp):
ATTCTGATTTTGATTCTGTCACCTGATTTG
Found at i:8295065 original size:25 final size:25
Alignment explanation
Indices: 8294999--8295066 Score: 118
Period size: 25 Copynumber: 2.7 Consensus size: 25
8294989 CCTGATACTG
* *
8294999 ATTCTGGTTTTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTA
8295024 ATTCTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTA
8295049 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
8295067 ATTCTGATTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.47
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTA
Found at i:8295091 original size:18 final size:18
Alignment explanation
Indices: 8294936--8295083 Score: 81
Period size: 19 Copynumber: 7.9 Consensus size: 18
8294926 TTGCATTCAC
*
8294936 ATTCTGATTTTTGATTCTG
1 ATTCTGA-TTCTGATTCTG
8294955 -TTACCTGATAT-TGATTCTG
1 ATT--CTGAT-TCTGATTCTG
* *
8294974 ATTTTGATTC-GGTTACCTG
1 ATTCTGATTCTGATT--CTG
* * *
8294993 ATACTGATTCTGGTTTTG
1 ATTCTGATTCTGATTCTG
* *
8295011 ATTCTG-TCACCTAATTCTG
1 ATTCTGAT--TCTGATTCTG
* *
8295030 ATTCTGATTCTG-TCACCTA
1 ATTCTGATTCTGAT--TCTG
8295049 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
8295067 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
8295084 AGTTCTGACA
Statistics
Matches: 99, Mismatches: 16, Indels: 29
0.69 0.11 0.20
Matches are distributed among these distances:
17 6 0.06
18 34 0.34
19 46 0.46
20 13 0.13
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.49
Consensus pattern (18 bp):
ATTCTGATTCTGATTCTG
Found at i:8296874 original size:49 final size:49
Alignment explanation
Indices: 8296744--8296880 Score: 166
Period size: 51 Copynumber: 2.8 Consensus size: 49
8296734 ACTATGAGTA
* * **
8296744 AATTGGCCGCATGTGTAGTACTAAGTGCATGCTACTATGCGTACCCGAT
1 AATTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACACGTACCCGAT
* * * * *
8296793 AACTTTGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGAT
1 AA--TTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACACGTACCCGAT
*
8296844 AATTGGTCGCAAGTGTAGTACTAAGTGCAGGCTACTA
1 AATTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
8296881 TGCGTACCAG
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
49 33 0.45
51 40 0.55
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (49 bp):
AATTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACACGTACCCGAT
Found at i:8296888 original size:49 final size:49
Alignment explanation
Indices: 8296744--8296893 Score: 183
Period size: 49 Copynumber: 3.0 Consensus size: 49
8296734 ACTATGAGTA
* * *
8296744 AATTGGCCGCATGTGTAGTACTAAGTGCATGCTACTATGCGTACCCGAT
1 AATTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT
* * * *** *
8296793 AACTTTGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGAT
1 AA--TTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT
*
8296844 AATTGGTCGCAAGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT
1 AATTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT
8296893 A
1 A
8296894 GCTTTGGCTA
Statistics
Matches: 82, Mismatches: 17, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
49 42 0.51
51 40 0.49
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (49 bp):
AATTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT
Found at i:8296923 original size:100 final size:100
Alignment explanation
Indices: 8296744--8296924 Score: 240
Period size: 100 Copynumber: 1.8 Consensus size: 100
8296734 ACTATGAGTA
* * * *
8296744 AATTGGCCGCATGTGTAGTACTAAGTGCATGCTACTATGCGTACCCGATAACTTTGATCACGTGT
1 AATTGGCCGCAAGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTTGATCAAGTGT
* *
8296809 GTAGTACTAAGTGCAGGCTACTACATGTACCGGAT
66 GTAGAAATAAGTGCAGGCTACTACATGTACCGGAT
* * *
8296844 AATTGGTCGCAAGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGCTTTGGCTACAAGT
1 AATTGGCCGCAAGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTT-GAT-CAAGT
*
8296909 GTG-A-AAATATGTGCAG
64 GTGTAGAAATAAGTGCAG
8296925 ACAACTGAGT
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
100 59 0.86
101 3 0.04
102 7 0.10
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (100 bp):
AATTGGCCGCAAGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTTGATCAAGTGT
GTAGAAATAAGTGCAGGCTACTACATGTACCGGAT
Found at i:8300681 original size:7 final size:7
Alignment explanation
Indices: 8300669--8300718 Score: 82
Period size: 7 Copynumber: 7.0 Consensus size: 7
8300659 TTATATAGGT
8300669 AATACTA
1 AATACTA
8300676 AATACTA
1 AATACTA
8300683 AATACTA
1 AATACTA
8300690 AATACTA
1 AATACTA
8300697 AATACTA
1 AATACTA
*
8300704 AATACGA
1 AATACTA
8300711 AATGACTA
1 AAT-ACTA
8300719 TTTTATTATG
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
7 37 0.93
8 3 0.08
ACGTcount: A:0.56, C:0.14, G:0.04, T:0.26
Consensus pattern (7 bp):
AATACTA
Found at i:8302290 original size:29 final size:30
Alignment explanation
Indices: 8302242--8302309 Score: 81
Period size: 29 Copynumber: 2.3 Consensus size: 30
8302232 ACTGAATCTG
8302242 AAATT-TAAAATATAAAAAATAT-AAAGACT
1 AAATTCTAAAATATAAAAAATATCAAA-ACT
*
8302271 AAATTCCTAAAA-AT-AAAAATATCCAAACT
1 AAATT-CTAAAATATAAAAAATATCAAAACT
8302300 AAATTCTAAA
1 AAATTCTAAA
8302310 TTTCGGAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
28 5 0.14
29 21 0.60
30 4 0.11
31 5 0.14
ACGTcount: A:0.62, C:0.10, G:0.01, T:0.26
Consensus pattern (30 bp):
AAATTCTAAAATATAAAAAATATCAAAACT
Found at i:8302589 original size:17 final size:17
Alignment explanation
Indices: 8302567--8302604 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
8302557 CAGAAAATGA
8302567 TTTTGAAAA-ATATATAT
1 TTTTGAAAACA-ATATAT
8302584 TTTTGAAAACAATATAT
1 TTTTGAAAACAATATAT
8302601 TTTT
1 TTTT
8302605 CAATGTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 19 0.95
18 1 0.05
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (17 bp):
TTTTGAAAACAATATAT
Found at i:8303067 original size:26 final size:24
Alignment explanation
Indices: 8303025--8303077 Score: 63
Period size: 24 Copynumber: 2.1 Consensus size: 24
8303015 TACGTGTTTA
8303025 TTTTTAAAATCTATAAAATAATATAT
1 TTTTTAAAATCTAT-AAA-AATATAT
*
8303051 TTTTATAAAAT-TTTAAAAATATAT
1 TTTT-TAAAATCTATAAAAATATAT
8303075 TTT
1 TTT
8303078 AAAAATAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 10 0.40
25 3 0.12
26 6 0.24
27 6 0.24
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (24 bp):
TTTTTAAAATCTATAAAAATATAT
Found at i:8303076 original size:13 final size:13
Alignment explanation
Indices: 8303060--8303084 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8303050 TTTTTATAAA
8303060 ATTTTAAAAATAT
1 ATTTTAAAAATAT
8303073 ATTTTAAAAATA
1 ATTTTAAAAATA
8303085 AATAAAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATTTTAAAAATAT
Found at i:8303136 original size:43 final size:44
Alignment explanation
Indices: 8303040--8303124 Score: 111
Period size: 44 Copynumber: 2.0 Consensus size: 44
8303030 AAAATCTATA
* *
8303040 AAATAATATATTTTTATAAAATTTTAAAAATATATTTTAAAAAT
1 AAATAAAATATTTTTATAAAATTTTAAAAATACATTTTAAAAAT
* *
8303084 AAATAAAATATTTTTAT-AATTTATTAAATA-ACATTTTAAAA
1 AAATAAAATATTTTTATAAAATT-TTAAAAATACATTTTAAAA
8303125 GTAATGAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
43 14 0.39
44 22 0.61
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (44 bp):
AAATAAAATATTTTTATAAAATTTTAAAAATACATTTTAAAAAT
Found at i:8304720 original size:20 final size:21
Alignment explanation
Indices: 8304697--8304735 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
8304687 AAGCTAAAAC
8304697 AAGCTCATTGAGCT-AAGATT
1 AAGCTCATTGAGCTGAAGATT
**
8304717 AAGCTGGTTGAGCTGAAGA
1 AAGCTCATTGAGCTGAAGA
8304736 AGATTGCAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.33, C:0.13, G:0.28, T:0.26
Consensus pattern (21 bp):
AAGCTCATTGAGCTGAAGATT
Found at i:8305570 original size:35 final size:34
Alignment explanation
Indices: 8305524--8305592 Score: 102
Period size: 35 Copynumber: 2.0 Consensus size: 34
8305514 TGACAAGTTG
* * *
8305524 TTGAGAACAGTAGCTTCATTCTTAGCTTTCCCTA
1 TTGAGAACAGTAGCGTAATTCTTAGCATTCCCTA
8305558 NTTGAGAACAGTAGCGTAATTCTTAGCATTCCCTA
1 -TTGAGAACAGTAGCGTAATTCTTAGCATTCCCTA
8305593 CAACGACCTC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.35
Consensus pattern (34 bp):
TTGAGAACAGTAGCGTAATTCTTAGCATTCCCTA
Found at i:8307788 original size:15 final size:16
Alignment explanation
Indices: 8307768--8307801 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
8307758 CTTGTTTTCC
8307768 TTTCTTTT-TCTCACT
1 TTTCTTTTCTCTCACT
*
8307783 TTTCTTTTCTCTCTCT
1 TTTCTTTTCTCTCACT
8307799 TTT
1 TTT
8307802 TCACTTTTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.03, C:0.26, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTCTTTTCTCTCACT
Found at i:8308978 original size:21 final size:20
Alignment explanation
Indices: 8308941--8308986 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 20
8308931 TTCAACACAC
*
8308941 TTTTTTTTATAATTTCGAATT
1 TTTTTTTTATAACTTCG-ATT
8308962 ATTTTTTTTAT-ACTTCGATT
1 -TTTTTTTTATAACTTCGATT
8308982 TTTTT
1 TTTTT
8308987 GTTCAATTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 5 0.22
20 3 0.13
21 5 0.22
22 10 0.43
ACGTcount: A:0.20, C:0.07, G:0.04, T:0.70
Consensus pattern (20 bp):
TTTTTTTTATAACTTCGATT
Found at i:8315167 original size:21 final size:22
Alignment explanation
Indices: 8315115--8315167 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
8315105 AAATAAAGTC
*
8315115 CATGTAT-AAATATCATCATCT
1 CATGTATCATATATCATCATCT
* *
8315136 CATGTTTTCATATATCAT-ATGT
1 CATG-TATCATATATCATCATCT
8315158 CATGTATCAT
1 CATGTATCAT
8315168 CATTTACTTG
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 9 0.35
22 9 0.35
23 8 0.31
ACGTcount: A:0.32, C:0.17, G:0.08, T:0.43
Consensus pattern (22 bp):
CATGTATCATATATCATCATCT
Found at i:8317204 original size:13 final size:14
Alignment explanation
Indices: 8317186--8317216 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
8317176 ATGTTGGTGT
8317186 GAAAA-TTCGTTAA
1 GAAAATTTCGTTAA
8317199 GAAAATTTCGTTAA
1 GAAAATTTCGTTAA
8317213 GAAA
1 GAAA
8317217 TTTTATCGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.29
14 12 0.71
ACGTcount: A:0.48, C:0.06, G:0.16, T:0.29
Consensus pattern (14 bp):
GAAAATTTCGTTAA
Found at i:8324888 original size:85 final size:85
Alignment explanation
Indices: 8324781--8324941 Score: 229
Period size: 85 Copynumber: 1.9 Consensus size: 85
8324771 CATGTTATCA
* * *
8324781 CATATTGATGCCACTGTCCCAGACAGGGTCTTACACGA-AA-T-CATATAACGATGCCAATGTCC
1 CATAATGATGCCAATGTCCCAGACAGGGTCTTACAC-ATAATTGCA-AT-ACAATGCCAATGTCC
8324843 CAGACATGGTCTTATCGTAATAG
63 CAGACATGGTCTTATCGTAATAG
* *
8324866 CATAATGATGCCAATGTCCCAGATATGGTCTTACACATAATTGCAATACAATGCCAATGTCCCAG
1 CATAATGATGCCAATGTCCCAGACAGGGTCTTACACATAATTGCAATACAATGCCAATGTCCCAG
8324931 ACATGGTCTTA
66 ACATGGTCTTA
8324942 CATGTAATCT
Statistics
Matches: 68, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
84 1 0.01
85 62 0.91
86 3 0.04
87 2 0.03
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (85 bp):
CATAATGATGCCAATGTCCCAGACAGGGTCTTACACATAATTGCAATACAATGCCAATGTCCCAG
ACATGGTCTTATCGTAATAG
Found at i:8324894 original size:42 final size:43
Alignment explanation
Indices: 8324762--8324949 Score: 188
Period size: 43 Copynumber: 4.4 Consensus size: 43
8324752 TATCCCGAAT
* * * *
8324762 ATGGTCTTACATGTTATCA-CATATTGATGCCACTGTCCCAGAC
1 ATGGTCTTACACGTAAT-AGCATAATGATGCCAATGTCCCAGAC
* * * *
8324805 AGGGTCTTACACGAAATCA-TATAACGATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAAT-AGCATAATGATGCCAATGTCCCAGAC
* *
8324848 ATGGTCTTA-TCGTAATAGCATAATGATGCCAATGTCCCAGAT
1 ATGGTCTTACACGTAATAGCATAATGATGCCAATGTCCCAGAC
* *
8324890 ATGGTCTTACACATAATTGCAATACA--ATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATAGC-ATA-ATGATGCCAATGTCCCAGAC
*
8324933 ATGGTCTTACATGTAAT
1 ATGGTCTTACACGTAAT
8324950 CTCATCTCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 8
0.81 0.13 0.05
Matches are distributed among these distances:
41 1 0.01
42 35 0.29
43 81 0.67
44 3 0.02
45 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (43 bp):
ATGGTCTTACACGTAATAGCATAATGATGCCAATGTCCCAGAC
Found at i:8330463 original size:14 final size:14
Alignment explanation
Indices: 8330444--8330471 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8330434 TCAATAATTT
8330444 ATATTAATTTATCA
1 ATATTAATTTATCA
8330458 ATATTAATTTATCA
1 ATATTAATTTATCA
8330472 TTCCTTGAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (14 bp):
ATATTAATTTATCA
Found at i:8335638 original size:39 final size:39
Alignment explanation
Indices: 8335574--8335696 Score: 156
Period size: 39 Copynumber: 3.2 Consensus size: 39
8335564 AGTGATGTTC
* *
8335574 ATCCGGACTTAGGGTCCGCAAGCTATGTGTTGGAATTAT
1 ATCCGGACTTAAGGTCCGCAAGCTATGTGCTGGAATTAT
* *
8335613 ATCCGGACTTAAGGTCTGCAGGCTATGTGCTGGAATTAT
1 ATCCGGACTTAAGGTCCGCAAGCTATGTGCTGGAATTAT
* * * * *
8335652 AACTGGACTTAAGGTCCACAAGCTACGTGCTGGAAATAT
1 ATCCGGACTTAAGGTCCGCAAGCTATGTGCTGGAATTAT
*
8335691 GTCCGG
1 ATCCGG
8335697 GCTAAAGTCC
Statistics
Matches: 70, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 70 1.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
ATCCGGACTTAAGGTCCGCAAGCTATGTGCTGGAATTAT
Found at i:8337681 original size:46 final size:46
Alignment explanation
Indices: 8337596--8337683 Score: 106
Period size: 46 Copynumber: 1.9 Consensus size: 46
8337586 CCGATGCATG
* * * *
8337596 TCCCAGACATGTCTTACACTGGCTTACGTCACGAGGCCAATGAATA
1 TCCCAAACATGTCTTACACTAGCTTACATCACAAGGCCAATGAATA
* *
8337642 TCCCAAACATGTCTTACACTAGCTCT-CATCTCAATGCCAATG
1 TCCCAAACATGTCTTACACTAGCT-TACATCACAAGGCCAATG
8337684 CCATGTCTTA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
46 34 0.97
47 1 0.03
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.26
Consensus pattern (46 bp):
TCCCAAACATGTCTTACACTAGCTTACATCACAAGGCCAATGAATA
Found at i:8345390 original size:46 final size:47
Alignment explanation
Indices: 8345102--8345418 Score: 191
Period size: 46 Copynumber: 6.7 Consensus size: 47
8345092 GTATAATGTT
* * * * ** * * **
8345102 GATGCCATGTCCCAGACGTGGTCTTACATTGGCTCATTTATCAAGTT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCATGCC
* * * ** * *
8345149 GATTCCATGTCCCAGACATGGTCTTACGCT-GACTATAGAAATCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAG-CT-TACATCTC-ATGCC
* * * *
8345198 GACGCCATGTCCTAGACATGGTCTTACACTAGCTCTCACATATCCGTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCT-T-ACATCT-CATGCC
* * *
8345248 GATGCCATGTCCCAGACAGGGTCTTACACT-GAC--ACATTTCATAGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAG-CTTACATCTCAT-GCC
* * * * *
8345294 GATG-CATGTCCCAGACAT-ATCTTACACTGGCTTACGTCACGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTC-ATGCC
* *
8345340 GATG-CATGTCCCAGACATGG-CTTACACTAGCTTTCATCTCAATGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTC-ATGCC
* *
8345386 GATGCCATATCCCAGACATGGTCTCACACTAGC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC
8345419 ATACCAATGA
Statistics
Matches: 212, Mismatches: 43, Indels: 29
0.75 0.15 0.10
Matches are distributed among these distances:
44 10 0.05
45 16 0.08
46 59 0.28
47 44 0.21
48 14 0.07
49 33 0.16
50 35 0.17
51 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCATGCC
Found at i:8350799 original size:88 final size:88
Alignment explanation
Indices: 8350668--8350835 Score: 255
Period size: 88 Copynumber: 1.9 Consensus size: 88
8350658 AGTTCGATAG
* * * *
8350668 TGTGGTAATGATCCTCGATAATTCTCGAGGTTCCGGTAGCTTCGATGATCTATAAAACAATGCAA
1 TGTGGTAATGATCCTCGACAATTCCCGAGCTTCCGGTAGCTTCGATGATCTATAAAACAATACAA
8350733 ACACACAAAAAGTAAAATAATGT
66 ACACACAAAAAGTAAAATAATGT
* * * *
8350756 TGTGGTGATGATCCTCGACGATTCCCGATCTTCCGGTAGCTTCGATGATCTATAAAATAATACAA
1 TGTGGTAATGATCCTCGACAATTCCCGAGCTTCCGGTAGCTTCGATGATCTATAAAACAATACAA
*
8350821 ACACACACAAAGTAA
66 ACACACAAAAAGTAA
8350836 GCTTTCAAAA
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
88 71 1.00
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.27
Consensus pattern (88 bp):
TGTGGTAATGATCCTCGACAATTCCCGAGCTTCCGGTAGCTTCGATGATCTATAAAACAATACAA
ACACACAAAAAGTAAAATAATGT
Found at i:8357117 original size:37 final size:37
Alignment explanation
Indices: 8357053--8357126 Score: 91
Period size: 37 Copynumber: 2.0 Consensus size: 37
8357043 TTACAAGACA
8357053 AAATCATTATAAGCCACATCTCATGGCTACAT-ACAAC
1 AAATCATTATAAGCCACATCTCATGGCTA-ATCACAAC
*
8357090 AAATCATTATAAGCCA-ATACAT-TTGGCTAATCACAAC
1 AAATCATTATAAGCCACAT-C-TCATGGCTAATCACAAC
8357127 GACATCGACA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
36 4 0.12
37 28 0.85
38 1 0.03
ACGTcount: A:0.42, C:0.24, G:0.08, T:0.26
Consensus pattern (37 bp):
AAATCATTATAAGCCACATCTCATGGCTAATCACAAC
Found at i:8360667 original size:42 final size:43
Alignment explanation
Indices: 8360610--8360706 Score: 126
Period size: 42 Copynumber: 2.3 Consensus size: 43
8360600 CGATGCCTCC
*
8360610 GTCCCAGACAGGGTCTGACACGAAATCT-AATA-ACATGCCAAT
1 GTCCCAGACATGGTCTGACACGAAATCTCAATACA-ATGCCAAT
* * * *
8360652 GTCCCAAACATGGTCTTACACGTAATCTCAATACAATGCTAAT
1 GTCCCAGACATGGTCTGACACGAAATCTCAATACAATGCCAAT
8360695 GTCCCAGACATG
1 GTCCCAGACATG
8360707 TTCTTACATG
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
42 24 0.51
43 22 0.47
44 1 0.02
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (43 bp):
GTCCCAGACATGGTCTGACACGAAATCTCAATACAATGCCAAT
Found at i:8360712 original size:43 final size:42
Alignment explanation
Indices: 8360610--8360721 Score: 136
Period size: 43 Copynumber: 2.6 Consensus size: 42
8360600 CGATGCCTCC
* * *
8360610 GTCCCAGACAGGGTCTGACACGAAATCTAATAACATGCCAAT
1 GTCCCAGACATGGTCTTACACGTAATCTAATAACATGCCAAT
* *
8360652 GTCCCAAACATGGTCTTACACGTAATCTCAAT-ACAATGCTAAT
1 GTCCCAGACATGGTCTTACACGTAATCT-AATAAC-ATGCCAAT
* *
8360695 GTCCCAGACATGTTCTTACATGTAATC
1 GTCCCAGACATGGTCTTACACGTAATC
8360722 ACATATCGAT
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
42 26 0.43
43 34 0.57
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACGTAATCTAATAACATGCCAAT
Found at i:8365326 original size:27 final size:27
Alignment explanation
Indices: 8365289--8365427 Score: 147
Period size: 27 Copynumber: 5.2 Consensus size: 27
8365279 GGGACGAAAT
*
8365289 AATGACCGAAATACCCCCATAGGGTAA
1 AATGACTGAAATACCCCCATAGGGTAA
*
8365316 TATGACTGAAATACCCCCATAGGGTAA
1 AATGACTGAAATACCCCCATAGGGTAA
** *
8365343 AATGACCAAAATA-CCCCATAAGGTAA
1 AATGACTGAAATACCCCCATAGGGTAA
**
8365369 AATGACT-ATAATACCCTTATAGGGTAA
1 AATGACTGA-AATACCCCCATAGGGTAA
* * * * *
8365396 AATGATTGTAATACCCCTATAAGTTAA
1 AATGACTGAAATACCCCCATAGGGTAA
8365423 AATGA
1 AATGA
8365428 TTGTTTTTCC
Statistics
Matches: 94, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
25 1 0.01
26 22 0.23
27 71 0.76
ACGTcount: A:0.42, C:0.19, G:0.15, T:0.23
Consensus pattern (27 bp):
AATGACTGAAATACCCCCATAGGGTAA
Found at i:8365374 original size:53 final size:53
Alignment explanation
Indices: 8365289--8365427 Score: 163
Period size: 53 Copynumber: 2.6 Consensus size: 53
8365279 GGGACGAAAT
* *
8365289 AATGACCGAAATACCCCCATAGGGTAATATGACTGA-AATACCCCCATAGGGTAA
1 AATGACCGAAATA-CCCCATAAGGTAAAATGACT-ATAATACCCCCATAGGGTAA
* **
8365343 AATGACCAAAATACCCCATAAGGTAAAATGACTATAATACCCTTATAGGGTAA
1 AATGACCGAAATACCCCATAAGGTAAAATGACTATAATACCCCCATAGGGTAA
** * *
8365396 AATGATTGTAATACCCCTATAAGTTAAAATGA
1 AATGACCGAAATACCCC-ATAAGGTAAAATGA
8365428 TTGTTTTTCC
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
52 1 0.01
53 47 0.64
54 25 0.34
ACGTcount: A:0.42, C:0.19, G:0.15, T:0.23
Consensus pattern (53 bp):
AATGACCGAAATACCCCATAAGGTAAAATGACTATAATACCCCCATAGGGTAA
Found at i:8365634 original size:27 final size:27
Alignment explanation
Indices: 8365420--8365634 Score: 227
Period size: 27 Copynumber: 8.0 Consensus size: 27
8365410 CCCTATAAGT
* * * **
8365420 TAAAATGATTGTTTTTCCATTATGTAT
1 TAAAATGACTGTTTTGCCCTTATGTGG
*
8365447 TAAAATGA-TGATTTTGCCCTTATGTGA
1 TAAAATGACTG-TTTTGCCCTTATGTGG
* *
8365474 TAAAATGACAGTTTTTCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * *
8365501 CAAAATGACTACTTTT-CCCTTATGTGT
1 TAAAATGACT-GTTTTGCCCTTATGTGG
* *
8365528 TAAAATGACGGTTTTGCCCTTACGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* *
8365555 TAAAATGACGGTTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
*
8365582 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
** *
8365609 TAGGATAACTGTTTTGCCCTTATGTG
1 TAAAATGACTGTTTTGCCCTTATGTG
8365635 ATGTATATTT
Statistics
Matches: 159, Mismatches: 25, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
26 6 0.04
27 148 0.93
28 5 0.03
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.40
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATGTGG
Found at i:8365991 original size:18 final size:18
Alignment explanation
Indices: 8365964--8366019 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 18
8365954 AGGACTTGCA
*
8365964 TACTACTTACTGTTACTG
1 TACTAATTACTGTTACTG
8365982 TACTAATTACTGTTACTG
1 TACTAATTACTGTTACTG
* * **
8366000 CATTGTTTACTGTTACTG
1 TACTAATTACTGTTACTG
8366018 TA
1 TA
8366020 ATGGGCTAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.23, C:0.18, G:0.12, T:0.46
Consensus pattern (18 bp):
TACTAATTACTGTTACTG
Found at i:8367811 original size:27 final size:27
Alignment explanation
Indices: 8367787--8368272 Score: 526
Period size: 27 Copynumber: 18.0 Consensus size: 27
8367777 TAGCATTATT
*
8367787 GAAATACCCCTGTAATGTAGAATTACC
1 GAAATACCCCTGTAAGGTAGAATTACC
* * *
8367814 GAAATACCCTTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAAGGTAGAATTACC
8367841 GAAATACCCCTGTAAGGTAGAATTACC
1 GAAATACCCCTGTAAGGTAGAATTACC
* *
8367868 GAAACACCCCTGTAAGGTAAAATTACC
1 GAAATACCCCTGTAAGGTAGAATTACC
*
8367895 GAAATACCCCTGTAAGGTAGAATTACG
1 GAAATACCCCTGTAAGGTAGAATTACC
* * *
8367922 GAAATACCACTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAAGGTAGAATTACC
*
8367949 GAAATACCCTTGTAAGGTAGAATTACC
1 GAAATACCCCTGTAAGGTAGAATTACC
* * * *
8367976 AAAATACCCCTATAGGGTAGAATTACT
1 GAAATACCCCTGTAAGGTAGAATTACC
* * * *
8368003 GAAATACTCTTATAAGATAGAATTACC
1 GAAATACCCCTGTAAGGTAGAATTACC
* * *
8368030 GAAATAGCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAAGGTAGAATTACC
* *
8368057 GAAATACCCTTGTAAGGTAGAATTATC
1 GAAATACCCCTGTAAGGTAGAATTACC
* * **
8368084 GAAATACCACTGTAGGGTAGAATTATT
1 GAAATACCCCTGTAAGGTAGAATTACC
* **
8368111 GAAATACCCCTATAAGGTAGAATTATA
1 GAAATACCCCTGTAAGGTAGAATTACC
* *
8368138 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAAGGTAGAATTACC
* *
8368165 AAAATACCCCTAT-AGGATAGAATTACC
1 GAAATACCCCTGTAAGG-TAGAATTACC
* * * * * *
8368192 GAAATACCCTTGTAGGGTACAAATGCT
1 GAAATACCCCTGTAAGGTAGAATTACC
* *
8368219 GAAATACCCCTGTAAGGTAAAATTATC
1 GAAATACCCCTGTAAGGTAGAATTACC
* * *
8368246 GAGATA-CCCTCGTGAGGTAAAATTACC
1 GAAATACCCCT-GTAAGGTAGAATTACC
8368273 ATTTTGCCCC
Statistics
Matches: 380, Mismatches: 76, Indels: 6
0.82 0.16 0.01
Matches are distributed among these distances:
26 6 0.02
27 372 0.98
28 2 0.01
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.26
Consensus pattern (27 bp):
GAAATACCCCTGTAAGGTAGAATTACC
Found at i:8367868 original size:54 final size:53
Alignment explanation
Indices: 8367772--8368255 Score: 610
Period size: 54 Copynumber: 9.0 Consensus size: 53
8367762 CTCATATCTA
* * * *
8367772 TAGGCTAGCATTATTGAAATACCCCTGTAATGTAGAATTACCGAAATACCCTTG
1 TAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCC-TG
*
8367826 TAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAACACCCCTG
1 TAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATA-CCCTG
* * * *
8367880 TAAGGTAAAATTACCGAAATACCCCTGTAAGGTAGAATTACGGAAATACCACTG
1 TAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACC-CTG
* * *
8367934 TAGGGTAGAATTACTGAAATACCCTTGTAAGGTAGAATTACCAAAATACCCCTA
1 TAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATA-CCCTG
* * * *
8367988 TAGGGTAGAATTACTGAAATACTCTTATAAGATAGAATTACCGAAATAGCCCTG
1 TAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATA-CCCTG
* *
8368042 TAGGGTAGAATTACTGAAATACCCTTGTAAGGTAGAATTATCGAAATACCACTG
1 TAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACC-CTG
* * **
8368096 TAGGGTAGAATTATTGAAATACCCCTATAAGGTAGAATTATAGAAATACCCCTG
1 TAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATA-CCCTG
* *
8368150 TAGGGTAGAATTACTAAAATACCCCTAT-AGGATAGAATTACCGAAATACCCTTG
1 TAGGGTAGAATTACTGAAATACCCCTGTAAGG-TAGAATTACCGAAATACCC-TG
* * * * * *
8368204 TAGGGTACAAATGCTGAAATACCCCTGTAAGGTAAAATTATCGAGATACCCT
1 TAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCT
8368256 CGTGAGGTAA
Statistics
Matches: 379, Mismatches: 43, Indels: 17
0.86 0.10 0.04
Matches are distributed among these distances:
53 11 0.03
54 358 0.94
55 10 0.03
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (53 bp):
TAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTG
Found at i:8368661 original size:22 final size:22
Alignment explanation
Indices: 8368631--8368692 Score: 72
Period size: 22 Copynumber: 2.8 Consensus size: 22
8368621 AAGCCTTCTG
* *
8368631 ATTATGGCTTTGCGCCAACCTA
1 ATTATGGCTCTGTGCCAACCTA
*
8368653 CA-TATGGCTCTATGCCAACCTA
1 -ATTATGGCTCTGTGCCAACCTA
*
8368675 ATTATGGCTGTGTGCCAA
1 ATTATGGCTCTGTGCCAA
8368693 ACGTATTTGC
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
21 1 0.03
22 31 0.94
23 1 0.03
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (22 bp):
ATTATGGCTCTGTGCCAACCTA
Found at i:8368895 original size:26 final size:26
Alignment explanation
Indices: 8368851--8368929 Score: 88
Period size: 26 Copynumber: 3.0 Consensus size: 26
8368841 ATTCTGTTAA
* * *
8368851 GTGGCTTTGCTACATTATCTATTCTG
1 GTGGCTCTGCCACAATATCTATTCTG
8368877 GTGGCTCTGCCACAATATCTATATCTG
1 GTGGCTCTGCCACAATATCTAT-TCTG
* *
8368904 GTGACTCT-CTCACAATATCTGTTCTG
1 GTGGCTCTGC-CACAATATCTATTCTG
8368930 CTAGTCATGC
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
26 24 0.52
27 22 0.48
ACGTcount: A:0.19, C:0.24, G:0.18, T:0.39
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTATTCTG
Found at i:8368911 original size:27 final size:26
Alignment explanation
Indices: 8368866--8368929 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 26
8368856 TTTGCTACAT
*
8368866 TATCTATTCTGGTGGCTCTGC-CACAA
1 TATCTATTCTGGTGACTCT-CTCACAA
8368892 TATCTATATCTGGTGACTCTCTCACAA
1 TATCTAT-TCTGGTGACTCTCTCACAA
*
8368919 TATCTGTTCTG
1 TATCTATTCTG
8368930 CTAGTCATGC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
26 12 0.35
27 22 0.65
ACGTcount: A:0.20, C:0.25, G:0.16, T:0.39
Consensus pattern (26 bp):
TATCTATTCTGGTGACTCTCTCACAA
Found at i:8371064 original size:64 final size:64
Alignment explanation
Indices: 8370963--8371784 Score: 1617
Period size: 64 Copynumber: 12.8 Consensus size: 64
8370953 GATTATAGGA
* * *
8370963 GAAATCGCATAAGAGATCTCGTCAAGGAATATCGCAAATCAGGTGTGTAACGAAATTCCTTGAT
1 GAAATCACATAGGAGATCTCATCAAGGAATATCGCAAATCAGGTGTGTAACGAAATTCCTTGAT
8371027 GAAATCACATAGGAGATCTCATCAAGGAATATCGCAAATCAGGTGTGTAACGAAATTCCTTGAT
1 GAAATCACATAGGAGATCTCATCAAGGAATATCGCAAATCAGGTGTGTAACGAAATTCCTTGAT
8371091 GAAATCACATAGGAGATCTCATCAAGGAATATCGCAAATCAGGTGTGTAACGAAATTCCTTGAT
1 GAAATCACATAGGAGATCTCATCAAGGAATATCGCAAATCAGGTGTGTAACGAAATTCCTTGAT
8371155 GAAATCACATAGGAGATCTCATCAAGGAATATCGCAAATCAGGTGTGTAACGAAATTCCTTGAT
1 GAAATCACATAGGAGATCTCATCAAGGAATATCGCAAATCAGGTGTGTAACGAAATTCCTTGAT
8371219 GAAATCACATAGGAGATCTCATCAAGGAATATCGCAAATCAGGTGTGTAACGAAATTCCTTGAT
1 GAAATCACATAGGAGATCTCATCAAGGAATATCGCAAATCAGGTGTGTAACGAAATTCCTTGAT
8371283 GAAATCACATAGGAGATCTCATCAAGGAATATCGCAAATCAGGTGTGTAACGAAATTCCTTGAT
1 GAAATCACATAGGAGATCTCATCAAGGAATATCGCAAATCAGGTGTGTAACGAAATTCCTTGAT
8371347 GAAATCACATAGGAGATCTCATCAAGGAATATCGCAAATCAGGTGTGTAACGAAATTCCTTGAT
1 GAAATCACATAGGAGATCTCATCAAGGAATATCGCAAATCAGGTGTGTAACGAAATTCCTTGAT
8371411 GAAATCACATAGGAGATCTCATCAAGGAATATCGCAAATCAGGTGTGTAACGAAATTCCTTGAT
1 GAAATCACATAGGAGATCTCATCAAGGAATATCGCAAATCAGGTGTGTAACGAAATTCCTTGAT
8371475 GAAATCACATAGGAGATCTCATCAAGGAATATCGCAAATCAGGTGTGTAACGAAATTCCTTGAT
1 GAAATCACATAGGAGATCTCATCAAGGAATATCGCAAATCAGGTGTGTAACGAAATTCCTTGAT
8371539 GAAATCACATAGGAGATCTCATCAAGGAATATCGCAAATCAGGTGTGTAACGAAATTCCTTGAT
1 GAAATCACATAGGAGATCTCATCAAGGAATATCGCAAATCAGGTGTGTAACGAAATTCCTTGAT
8371603 GAAATCACATAGGAGATCTCATCAAGGAATATCGCAAATCAGGTGTGTAACGAAATTCCTTGAT
1 GAAATCACATAGGAGATCTCATCAAGGAATATCGCAAATCAGGTGTGTAACGAAATTCCTTGAT
8371667 GAAATCACATAGGAGATCTCATCAAGGAATATCGCAAATCAGGTGTGTAACGAAATTCCTTGAT
1 GAAATCACATAGGAGATCTCATCAAGGAATATCGCAAATCAGGTGTGTAACGAAATTCCTTGAT
8371731 GAAATCACATAGGAGATCTCATCAAGGAATATCGCAAATCAGGTGTGTAACGAA
1 GAAATCACATAGGAGATCTCATCAAGGAATATCGCAAATCAGGTGTGTAACGAA
8371785 CCCTTTTCAT
Statistics
Matches: 755, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 755 1.00
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.25
Consensus pattern (64 bp):
GAAATCACATAGGAGATCTCATCAAGGAATATCGCAAATCAGGTGTGTAACGAAATTCCTTGAT
Found at i:8372286 original size:25 final size:25
Alignment explanation
Indices: 8372257--8372304 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
8372247 TTATAACATG
* *
8372257 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
8372282 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
8372305 GTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:8372355 original size:9 final size:9
Alignment explanation
Indices: 8372343--8372399 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
8372333 TTTGATAAAA
8372343 ATGATATGT
1 ATGATATGT
*
8372352 ATGATATGCAC
1 ATGATATG--T
*
8372363 ATGACATGT
1 ATGATATGT
*
8372372 ATGATATGCAC
1 ATGATATG--T
8372383 ATGATATGT
1 ATGATATGT
8372392 ATGATATG
1 ATGATATG
8372400 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:8372371 original size:20 final size:20
Alignment explanation
Indices: 8372343--8372411 Score: 120
Period size: 20 Copynumber: 3.5 Consensus size: 20
8372333 TTTGATAAAA
8372343 ATGATATGTATGATATGCAC
1 ATGATATGTATGATATGCAC
*
8372363 ATGACATGTATGATATGCAC
1 ATGATATGTATGATATGCAC
8372383 ATGATATGTATGATATGCAC
1 ATGATATGTATGATATGCAC
*
8372403 ATGAGATGT
1 ATGATATGT
8372412 TCATAAATGC
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.35, C:0.10, G:0.22, T:0.33
Consensus pattern (20 bp):
ATGATATGTATGATATGCAC
Found at i:8372388 original size:11 final size:11
Alignment explanation
Indices: 8372352--8372406 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
8372342 AATGATATGT
8372352 ATGATATGCAC
1 ATGATATGCAC
* *
8372363 ATGACATG--T
1 ATGATATGCAC
8372372 ATGATATGCAC
1 ATGATATGCAC
*
8372383 ATGATATG--T
1 ATGATATGCAC
8372392 ATGATATGCAC
1 ATGATATGCAC
8372403 ATGA
1 ATGA
8372407 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:8372514 original size:25 final size:25
Alignment explanation
Indices: 8372458--8372600 Score: 211
Period size: 25 Copynumber: 5.8 Consensus size: 25
8372448 AGGAAGTGCA
*
8372458 AAAGGCCTTATGCCCCAGTTAT--T
1 AAAGGGCTTATGCCCCAGTTATGAT
*
8372481 AAAGGGCTTATGCCCTAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
8372506 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
*
8372531 GAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
*
8372556 AAAGGGCTTATGCCCCAGTTAT-AG
1 AAAGGGCTTATGCCCCAGTTATGAT
* *
8372580 AAAGGGCTTTTGCCCAAGTTA
1 AAAGGGCTTATGCCCCAGTTA
8372601 CTAAAAGAGG
Statistics
Matches: 110, Mismatches: 8, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
23 20 0.18
24 20 0.18
25 70 0.64
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (25 bp):
AAAGGGCTTATGCCCCAGTTATGAT
Found at i:8372553 original size:50 final size:49
Alignment explanation
Indices: 8372458--8372630 Score: 212
Period size: 50 Copynumber: 3.5 Consensus size: 49
8372448 AGGAAGTGCA
* * *
8372458 AAAGGCCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCTAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATATGAAGGGCTTATGCCCAAGTTATGAT
*
8372506 AAAGGGCTTATGCCCCAGTTATGATGAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-ATGAAGGGCTTATGCCCAAGTTATGAT
*
8372556 AAAGGGCTTATGCCCCAGTTATA-GAAAGGGCTTTTGCCCAAGTTACT-A-
1 AAAGGGCTTATGCCCCAGTTATATG-AAGGGCTTATGCCCAAGTTA-TGAT
*
8372604 AAAGAGG-TTAGGCCTCCAGTTATATGA
1 AAAG-GGCTTATGCC-CCAGTTATATGA
8372631 TAAAACAGCT
Statistics
Matches: 112, Mismatches: 6, Indels: 13
0.85 0.05 0.10
Matches are distributed among these distances:
48 32 0.29
49 32 0.29
50 48 0.43
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATATGAAGGGCTTATGCCCAAGTTATGAT
Found at i:8372856 original size:31 final size:31
Alignment explanation
Indices: 8372820--8372883 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
8372810 CGTTTACAGT
8372820 AAAGGCTTCGGC-CTAGTAATATGAAATATGA
1 AAAGGCTTCGGCTC-AGTAATATGAAATATGA
* **
8372851 AAAGGCTTTGGCTCAGTGCTATGAAATATGA
1 AAAGGCTTCGGCTCAGTAATATGAAATATGA
8372882 AA
1 AA
8372884 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 28 0.97
32 1 0.03
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCTCAGTAATATGAAATATGA
Found at i:8375698 original size:27 final size:27
Alignment explanation
Indices: 8375651--8375746 Score: 90
Period size: 27 Copynumber: 3.6 Consensus size: 27
8375641 AAGTACTCCC
*
8375651 GATTTACAGAATAATC-GTTTTACCCTA
1 GATTTACAGAATTA-CAGTTTTACCCTA
* * *
8375678 GATTTATAGAATTTCTA-TTTTTCCCTTA
1 GATTTACAGAATTAC-AGTTTTACCC-TA
*
8375706 -ATTTACAGAATTACAGTTTTACCCTC
1 GATTTACAGAATTACAGTTTTACCCTA
*
8375732 GATTTACAAAATTAC
1 GATTTACAGAATTAC
8375747 TAAAATACCC
Statistics
Matches: 55, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
26 3 0.05
27 50 0.91
28 2 0.04
ACGTcount: A:0.32, C:0.18, G:0.08, T:0.42
Consensus pattern (27 bp):
GATTTACAGAATTACAGTTTTACCCTA
Found at i:8375755 original size:27 final size:27
Alignment explanation
Indices: 8375725--8375944 Score: 151
Period size: 27 Copynumber: 8.1 Consensus size: 27
8375715 ATTACAGTTT
* *
8375725 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * *
8375752 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * * *
8375779 TACCCT-GGTCTATAAAATTGCTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
8375805 TACCC-CTGGTTTGTAAAATTACCAAAA
1 TACCCTC-GATTTATAAAATTACCAAAA
* *
8375832 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAA
* * * * *
8375859 TACCACTAGTTTTGTGAAATTACCGAAA
1 TACC-CTCGATTTATAAAATTACCAAAA
* ** *
8375887 TACCTTTAATTTATAAAATTACGAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * *
8375914 TACCCTTGATTGACAAAATTA-CAGAAA
1 TACCCTCGATTTATAAAATTACCA-AAA
8375941 TACC
1 TACC
8375945 TTTGACTTTC
Statistics
Matches: 156, Mismatches: 31, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
26 22 0.14
27 113 0.72
28 21 0.13
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCAAAA
Found at i:8375783 original size:54 final size:54
Alignment explanation
Indices: 8375725--8376002 Score: 204
Period size: 53 Copynumber: 5.1 Consensus size: 54
8375715 ATTACAGTTT
*
8375725 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
* * * * **
8375779 TACCCT-GGTCTATAAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
* * * * * *** *
8375832 TACCC-CTAGTTTGTAAAATTACCAAAATACCACTAGTTTTGTGAAATTACCGAAA
1 TACCCTCGA-TTTATAAAATTACTAAAATACC-CTTGGTTTACAAAATTACCAAAA
* ** * * *
8375887 TACCTTTAATTTATAAAATTACGAAAATACCCTTGATTGACAAAATTA-CAGAAA
1 TACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTACAAAATTACCA-AAA
* * * * * * **
8375941 TACCTTTGACTTTCTAAAAATTA-TAAAAATACCATTGGCTTACAACATTACTGAAA
1 TACCCTCGA-TTTAT-AAAATTACT-AAAATACCCTTGGTTTACAAAATTACCAAAA
8375997 TACCCT
1 TACCCT
8376003 TGGTTTGTAG
Statistics
Matches: 174, Mismatches: 41, Indels: 16
0.75 0.18 0.07
Matches are distributed among these distances:
53 46 0.26
54 46 0.26
55 46 0.26
56 36 0.21
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
Found at i:8375881 original size:28 final size:27
Alignment explanation
Indices: 8375739--8375918 Score: 173
Period size: 27 Copynumber: 6.7 Consensus size: 27
8375729 CTCGATTTAC
* * **
8375739 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTGGTTTGT
* *
8375766 AAAATTACCAAAATA-CCCTGGTCTAT
1 AAAATTACCAAAATACCCCTGGTTTGT
* *
8375792 AAAATTGCTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
8375819 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* *
8375846 AAAATTACCAAAATACCACTAGTTTTGT
1 AAAATTACCAAAATACCCCT-GGTTTGT
* * ** ** *
8375874 GAAATTACCGAAATACCTTTAATTTAT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
8375901 AAAATTACGAAAATACCC
1 AAAATTACCAAAATACCC
8375919 TTGATTGACA
Statistics
Matches: 126, Mismatches: 25, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
26 21 0.17
27 84 0.67
28 21 0.17
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGGTTTGT
Found at i:8375888 original size:55 final size:54
Alignment explanation
Indices: 8375734--8375917 Score: 183
Period size: 55 Copynumber: 3.4 Consensus size: 54
8375724 TTACCCTCGA
* * ** *
8375734 TTTACAAAATTACTAAAATACC-CTTGGTTTACAAAATTACCAAAATA-CCCTGG
1 TTTATAAAATTACCAAAATACCAC-TGGTTTGTAAAATTACCAAAATACCCCTAG
* * * *
8375787 TCTATAAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAG
1 TTTATAAAATTACCAAAATACCACTGGTTTGTAAAATTACCAAAATACCCCTAG
* * * * ** *
8375841 TTTGTAAAATTACCAAAATACCACTAGTTTTGTGAAATTACCGAAATACCTTTAA
1 TTTATAAAATTACCAAAATACCACT-GGTTTGTAAAATTACCAAAATACCCCTAG
*
8375896 TTTATAAAATTACGAAAATACC
1 TTTATAAAATTACCAAAATACC
8375918 CTTGATTGAC
Statistics
Matches: 109, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
53 40 0.37
54 26 0.24
55 43 0.39
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (54 bp):
TTTATAAAATTACCAAAATACCACTGGTTTGTAAAATTACCAAAATACCCCTAG
Found at i:8375991 original size:56 final size:54
Alignment explanation
Indices: 8375875--8376000 Score: 137
Period size: 56 Copynumber: 2.3 Consensus size: 54
8375865 TAGTTTTGTG
* * *
8375875 AAATTACCGAAATACCTTTAATTTATAAAATTACGAAAATACCCTTGATTGACA
1 AAATTACAGAAATACCTTTAATTTATAAAATTACAAAAATACCATTGATTGACA
* * * *
8375929 AAATTACAGAAATACCTTTGACTTTCTAAAAATTATAAAAATACCATTGGCTT-ACA
1 AAATTACAGAAATACCTTT-AATTTAT-AAAATTACAAAAATACCATT-GATTGACA
* *
8375985 ACATTACTGAAATACC
1 AAATTACAGAAATACC
8376001 CTTGGTTTGT
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
54 18 0.30
55 5 0.08
56 34 0.57
57 3 0.05
ACGTcount: A:0.44, C:0.17, G:0.07, T:0.31
Consensus pattern (54 bp):
AAATTACAGAAATACCTTTAATTTATAAAATTACAAAAATACCATTGATTGACA
Found at i:8377314 original size:25 final size:25
Alignment explanation
Indices: 8377285--8377332 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
8377275 TTATAACATG
* *
8377285 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
*
8377310 AAAATGACCGTTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
8377333 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:8377383 original size:9 final size:9
Alignment explanation
Indices: 8377371--8377427 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
8377361 TTTGATAAAC
8377371 ATGATATGT
1 ATGATATGT
*
8377380 ATGATATGCAC
1 ATGATATG--T
*
8377391 ATGACATGT
1 ATGATATGT
*
8377400 ATGATATGCAC
1 ATGATATG--T
8377411 ATGATATGT
1 ATGATATGT
8377420 ATGATATG
1 ATGATATG
8377428 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:8377394 original size:20 final size:20
Alignment explanation
Indices: 8377369--8377439 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
8377359 ATTTTGATAA
8377369 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
8377389 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
8377409 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
8377429 ACATGAGATGT
1 ACATGATATGT
8377440 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:8377416 original size:11 final size:11
Alignment explanation
Indices: 8377380--8377434 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
8377370 CATGATATGT
8377380 ATGATATGCAC
1 ATGATATGCAC
* *
8377391 ATGACATG--T
1 ATGATATGCAC
8377400 ATGATATGCAC
1 ATGATATGCAC
*
8377411 ATGATATG--T
1 ATGATATGCAC
8377420 ATGATATGCAC
1 ATGATATGCAC
8377431 ATGA
1 ATGA
8377435 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:8377517 original size:23 final size:24
Alignment explanation
Indices: 8377486--8377712 Score: 157
Period size: 24 Copynumber: 9.0 Consensus size: 24
8377476 AGGAAGTGCA
8377486 AAAGGGCTTATGCCCCAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
*
8377509 AAAGAGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
8377534 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
*
8377559 GAAGGGCTT-TGCCCCAGTTACTA-
1 AAAGGGCTTATGCCCCAGTTA-TAT
8377582 AAAGAGGC-TA-GCCTCCAGTTATATGAT
1 AAAG-GGCTTATGCC-CCAG-T-TAT-AT
* *
8377609 AAAGCAGC-TATGCTGCCAGTGGAGATTATGAT
1 AAAG-GGCTTATGC--CC----CAG-TTAT-AT
*
8377641 AAAGGGCTTATGCCCCAGTTATAA
1 AAAGGGCTTATGCCCCAGTTATAT
*
8377665 AAAGGGCTTTTGCCCCAGTTACTA-
1 AAAGGGCTTATGCCCCAGTTA-TAT
8377689 AAAGAGGC-TA-GCCTCCAGTTATAT
1 AAAG-GGCTTATGCC-CCAGTTATAT
8377713 GATAAAGCAG
Statistics
Matches: 169, Mismatches: 13, Indels: 43
0.75 0.06 0.19
Matches are distributed among these distances:
23 33 0.20
24 52 0.31
25 45 0.27
26 5 0.03
27 8 0.05
28 2 0.01
29 1 0.01
30 3 0.02
31 2 0.01
32 15 0.09
33 3 0.02
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAGGGCTTATGCCCCAGTTATAT
Found at i:8377542 original size:25 final size:25
Alignment explanation
Indices: 8377486--8377685 Score: 166
Period size: 24 Copynumber: 7.8 Consensus size: 25
8377476 AGGAAGTGCA
8377486 AAAGGGCTTATGCCCCAGTTAT--T
1 AAAGGGCTTATGCCCCAGTTATGAT
*
8377509 AAAGAGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
8377534 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
*
8377559 GAAGGGCTT-TGCCCCAGTTACT-A-
1 AAAGGGCTTATGCCCCAGTTA-TGAT
8377582 AAAGAGGC-TA-GCCTCCAGTTATATGAT
1 AAAG-GGCTTATGCC-CCAG-T-TATGAT
* *
8377609 AAAGCAGC-TATGCTGCCAGTGGAGATTATGAT
1 AAAG-GGCTTATGC--CC----CAG-TTATGAT
*
8377641 AAAGGGCTTATGCCCCAGTTAT-AA
1 AAAGGGCTTATGCCCCAGTTATGAT
*
8377665 AAAGGGCTTTTGCCCCAGTTA
1 AAAGGGCTTATGCCCCAGTTA
8377686 CTAAAAGAGG
Statistics
Matches: 147, Mismatches: 12, Indels: 35
0.76 0.06 0.18
Matches are distributed among these distances:
23 28 0.19
24 40 0.27
25 40 0.27
26 5 0.03
27 8 0.05
28 2 0.01
29 1 0.01
30 3 0.02
31 2 0.01
32 15 0.10
33 3 0.02
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAGGGCTTATGCCCCAGTTATGAT
Found at i:8377697 original size:25 final size:24
Alignment explanation
Indices: 8377485--8377604 Score: 119
Period size: 25 Copynumber: 5.0 Consensus size: 24
8377475 GAGGAAGTGC
8377485 AAAAG-GGCTTATGCCCCAGTTAT
1 AAAAGAGGCTTATGCCCCAGTTAT
*
8377508 TAAAGA-GCTTATGCCCCAGTTAT
1 AAAAGAGGCTTATGCCCCAGTTAT
8377531 GATAAAG-GGCTTATGCCCCAGTTAT
1 -A-AAAGAGGCTTATGCCCCAGTTAT
*
8377556 GATGAAG-GGCTT-TGCCCCAGTTACT
1 -A-AAAGAGGCTTATGCCCCAGTTA-T
8377581 AAAAGAGGC-TA-GCCTCCAGTTAT
1 AAAAGAGGCTTATGCC-CCAGTTAT
8377604 A
1 A
8377605 TGATAAAGCA
Statistics
Matches: 85, Mismatches: 4, Indels: 16
0.81 0.04 0.15
Matches are distributed among these distances:
23 30 0.35
24 22 0.26
25 33 0.39
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGAGGCTTATGCCCCAGTTAT
Found at i:8377713 original size:107 final size:108
Alignment explanation
Indices: 8377525--8377746 Score: 403
Period size: 107 Copynumber: 2.1 Consensus size: 108
8377515 CTTATGCCCC
**
8377525 AGTTATGATAAAGGGCTTATGCCCCAGTTATGATGAAGGGCTTTGCCCCAGTTACTAAAAGAGGC
1 AGTTATGATAAAGGGCTTATGCCCCAGTTATGAAAAAGGGCTTTGCCCCAGTTACTAAAAGAGGC
8377590 TAGCCTCCAGTTATATGATAAAGCAGCTATGCTGCCAGTGGAG
66 TAGCCTCCAGTTATATGATAAAGCAGCTATGCTGCCAGTGGAG
8377633 A-TTATGATAAAGGGCTTATGCCCCAGTTAT-AAAAAGGGCTTTTGCCCCAGTTACTAAAAGAGG
1 AGTTATGATAAAGGGCTTATGCCCCAGTTATGAAAAAGGGC-TTTGCCCCAGTTACTAAAAGAGG
8377696 CTAGCCTCCAGTTATATGATAAAGCAGCTATGCTGCCAGTGGAG
65 CTAGCCTCCAGTTATATGATAAAGCAGCTATGCTGCCAGTGGAG
8377740 AGTTATG
1 AGTTATG
8377747 TCGGGGTGGG
Statistics
Matches: 110, Mismatches: 2, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
106 7 0.06
107 97 0.88
108 6 0.05
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.27
Consensus pattern (108 bp):
AGTTATGATAAAGGGCTTATGCCCCAGTTATGAAAAAGGGCTTTGCCCCAGTTACTAAAAGAGGC
TAGCCTCCAGTTATATGATAAAGCAGCTATGCTGCCAGTGGAG
Found at i:8379283 original size:48 final size:47
Alignment explanation
Indices: 8379189--8379362 Score: 136
Period size: 48 Copynumber: 3.6 Consensus size: 47
8379179 CTTGCACACT
* * ** ** *
8379189 AAGTGCCAATATCATGGCCTGAAGCCAACTCAATA-TATTTTGCACCCG
1 AAGTGCCAATATCATGGCCCGAAGCCAAAT-AA-AGTAACTCACACCCA
* * *
8379237 AAGTGCTAATATCATGGCCCGTAGCCAAAT-TAGTGAAGCTCACACCCA
1 AAGTGCCAATATCATGGCCCGAAGCCAAATAAAGT-AA-CTCACACCCA
* ** *
8379285 AAATGCCCGTATCATGGCTCGAAGCCAAATCAAAGTAACTCACACCCA
1 AAGTGCCAATATCATGGCCCGAAGCCAAAT-AAAGTAACTCACACCCA
* * *
8379333 AAGTGCCGATTTCATGGCCCAAAGCCAAAT
1 AAGTGCCAATATCATGGCCCGAAGCCAAAT
8379363 CAATATATTT
Statistics
Matches: 98, Mismatches: 23, Indels: 10
0.75 0.18 0.08
Matches are distributed among these distances:
45 1 0.01
46 1 0.01
47 1 0.01
48 90 0.92
49 2 0.02
50 3 0.03
ACGTcount: A:0.34, C:0.28, G:0.17, T:0.21
Consensus pattern (47 bp):
AAGTGCCAATATCATGGCCCGAAGCCAAATAAAGTAACTCACACCCA
Found at i:8382561 original size:33 final size:34
Alignment explanation
Indices: 8382514--8382583 Score: 97
Period size: 33 Copynumber: 2.1 Consensus size: 34
8382504 AACAGTGCAT
* * *
8382514 ACAGTAACGGTCTGGGCCTGAGCCCTATTCAATA
1 ACAGTAACAGTCTGGGCCTAAGCCCTATGCAATA
*
8382548 ACAGT-ACAGTCTGGGCCTAAGCCCTATGCAGTA
1 ACAGTAACAGTCTGGGCCTAAGCCCTATGCAATA
8382581 ACA
1 ACA
8382584 ATGTGGGCCT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
33 27 0.84
34 5 0.16
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (34 bp):
ACAGTAACAGTCTGGGCCTAAGCCCTATGCAATA
Found at i:8389956 original size:112 final size:112
Alignment explanation
Indices: 8389759--8389982 Score: 403
Period size: 112 Copynumber: 2.0 Consensus size: 112
8389749 AATGGCTAAT
*
8389759 CATTACCAAACATTTCCTTACCACCCAATAGCCATATCATAAGATCATATACACAAAATGATTAT
1 CATTACCAAACATTTCCTTACCACCCAATAGCCATATCATAAGATCATATACAAAAAATGATTAT
*
8389824 AATGCTATACATGTCATACTCAAAATATACAAGCCACTATACAAAAA
66 AATGCTATACATGTCATACTCAAAATAGACAAGCCACTATACAAAAA
*
8389871 CATTACCAAACATTTCTTTACCACCCAATAGCCATATCATAAGATCATATACAAAAAATGATTAT
1 CATTACCAAACATTTCCTTACCACCCAATAGCCATATCATAAGATCATATACAAAAAATGATTAT
* *
8389936 AATGCTATACATGTCATACTCAAAATAGACAAGCCATTATACCAAAA
66 AATGCTATACATGTCATACTCAAAATAGACAAGCCACTATACAAAAA
8389983 TGGTCCACGG
Statistics
Matches: 107, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
112 107 1.00
ACGTcount: A:0.45, C:0.23, G:0.06, T:0.26
Consensus pattern (112 bp):
CATTACCAAACATTTCCTTACCACCCAATAGCCATATCATAAGATCATATACAAAAAATGATTAT
AATGCTATACATGTCATACTCAAAATAGACAAGCCACTATACAAAAA
Found at i:8398203 original size:28 final size:28
Alignment explanation
Indices: 8398140--8398262 Score: 158
Period size: 28 Copynumber: 4.4 Consensus size: 28
8398130 ATATTAAGTC
* *
8398140 CGCACACTCAGTGCAATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
8398167 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
8398195 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
8398223 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
8398252 CGCACACTTAG
1 CGCACACTTAG
8398263 CGCCAATCTC
Statistics
Matches: 84, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
27 21 0.25
28 48 0.57
29 15 0.18
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:8398447 original size:67 final size:66
Alignment explanation
Indices: 8398323--8398456 Score: 196
Period size: 67 Copynumber: 2.0 Consensus size: 66
8398313 TCAACAACTC
* *
8398323 AATACATCTCACCTCTTTTCTCTTCATCCAACACTTTCATCACCACATACATCCATGTATATATA
1 AATACACCTCACCTCTTTTCTCTTCATCCAACACTTTCATCACCACATACATACATGTATATATA
8398388 T
66 T
* * * * *
8398389 AATACACCTCACCTCTTTTCTTTTTCATTCAATACTTTCATCACCCCATGCATACATGTATATAT
1 AATACACCTCACCTCTTTTC-TCTTCATCCAACACTTTCATCACCACATACATACATGTATATAT
8398454 AT
65 AT
8398456 A
1 A
8398457 TTTATCATTC
Statistics
Matches: 60, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
66 19 0.32
67 41 0.68
ACGTcount: A:0.30, C:0.30, G:0.02, T:0.38
Consensus pattern (66 bp):
AATACACCTCACCTCTTTTCTCTTCATCCAACACTTTCATCACCACATACATACATGTATATATA
T
Found at i:8401658 original size:29 final size:27
Alignment explanation
Indices: 8401640--8401709 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
8401630 ATATTAAGTC
8401640 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
8401667 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
8401695 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
8401710 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:8401703 original size:28 final size:28
Alignment explanation
Indices: 8401640--8401737 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
8401630 ATATTAAGTC
*
8401640 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
8401667 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
8401695 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
8401724 CGCACACTTAGTGC
1 CGCACACTTAGTGC
8401738 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:8409774 original size:27 final size:27
Alignment explanation
Indices: 8409744--8409839 Score: 120
Period size: 27 Copynumber: 3.5 Consensus size: 27
8409734 ATATTAAGTC
* *
8409744 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
8409771 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
8409798 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
8409826 CGCACACTTAGTGC
1 CGCACACTTAGTGC
8409840 CGCATGGTCA
Statistics
Matches: 58, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
27 42 0.72
28 16 0.28
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:8410851 original size:28 final size:28
Alignment explanation
Indices: 8410819--8410891 Score: 137
Period size: 28 Copynumber: 2.6 Consensus size: 28
8410809 AGCCCCATGA
*
8410819 CAAGTGGTATCCGAGCTAGGGTTCGAAC
1 CAAGTGGTATCCGAGCTAGGGTTCAAAC
8410847 CAAGTGGTATCCGAGCTAGGGTTCAAAC
1 CAAGTGGTATCCGAGCTAGGGTTCAAAC
8410875 CAAGTGGTATCCGAGCT
1 CAAGTGGTATCCGAGCT
8410892 GTTGGTTCGA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (28 bp):
CAAGTGGTATCCGAGCTAGGGTTCAAAC
Found at i:8411820 original size:38 final size:38
Alignment explanation
Indices: 8411778--8411854 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
8411768 GGAAGCCATG
8411778 AAGGTAGCGGTATCCGTGGTTAAGCTTGGTCTAGGGAA
1 AAGGTAGCGGTATCCGTGGTTAAGCTTGGTCTAGGGAA
8411816 AAGGTAGCGGTATCCGTGGTTAAGCTTGGTCTAGGGAA
1 AAGGTAGCGGTATCCGTGGTTAAGCTTGGTCTAGGGAA
8411854 A
1 A
8411855 GACAAGCTTG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.25, C:0.13, G:0.36, T:0.26
Consensus pattern (38 bp):
AAGGTAGCGGTATCCGTGGTTAAGCTTGGTCTAGGGAA
Found at i:8415107 original size:47 final size:49
Alignment explanation
Indices: 8414981--8415115 Score: 170
Period size: 48 Copynumber: 2.8 Consensus size: 49
8414971 CAACCACATT
* *
8414981 ATGA-GAGCCAGTGTAAGACCATGTGTGGGACATGGCATTGGCTACGAG
1 ATGATGAGCCAGTGTAAGACCATGTGTGGGACATGGCATCGACTACGAG
* *
8415029 ATGAT-AGTCAGTGTAAGACCATGTGTGGGACATGGCATCGACT-TGAG
1 ATGATGAGCCAGTGTAAGACCATGTGTGGGACATGGCATCGACTACGAG
* * * *
8415076 AT-ATGAGCCAGTATAAGACCGTGTCTAGGACATGGCATCG
1 ATGATGAGCCAGTGTAAGACCATGTGTGGGACATGGCATCG
8415116 GCACCTTACC
Statistics
Matches: 76, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
46 2 0.03
47 35 0.46
48 39 0.51
ACGTcount: A:0.28, C:0.17, G:0.32, T:0.23
Consensus pattern (49 bp):
ATGATGAGCCAGTGTAAGACCATGTGTGGGACATGGCATCGACTACGAG
Found at i:8418747 original size:21 final size:21
Alignment explanation
Indices: 8418721--8418781 Score: 113
Period size: 21 Copynumber: 2.9 Consensus size: 21
8418711 TTGAATTGGC
8418721 CACACGGGCGTGTGCCCCTTT
1 CACACGGGCGTGTGCCCCTTT
8418742 CACACGGGCGTGTGCCCCTTT
1 CACACGGGCGTGTGCCCCTTT
*
8418763 CACATGGGCGTGTGCCCCT
1 CACACGGGCGTGTGCCCCT
8418782 ATGTCAAGTG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.10, C:0.38, G:0.30, T:0.23
Consensus pattern (21 bp):
CACACGGGCGTGTGCCCCTTT
Found at i:8425536 original size:25 final size:25
Alignment explanation
Indices: 8425508--8425560 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
8425498 TCTCACAAGT
* *
8425508 TGTAAGTCGATATGCTTATATGAGC
1 TGTAAGTCGATATGCTCACATGAGC
*
8425533 TGTAAGTCGGTATGCTCACATGAGC
1 TGTAAGTCGATATGCTCACATGAGC
8425558 TGT
1 TGT
8425561 GGGTCAGAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (25 bp):
TGTAAGTCGATATGCTCACATGAGC
Found at i:8434261 original size:45 final size:45
Alignment explanation
Indices: 8434171--8434262 Score: 130
Period size: 45 Copynumber: 2.0 Consensus size: 45
8434161 AAAACTCCTT
* * *
8434171 ATTGTATATACTTTATGAAAGCAATTCATCCAACTGCTTTATCCA
1 ATTGTATACACTTTACGAAAGCAATTCATCCAACTACTTTATCCA
* * *
8434216 ATTGTATACACTTTGCGAAAGCAATTCATCCAACTATTTTGTCCA
1 ATTGTATACACTTTACGAAAGCAATTCATCCAACTACTTTATCCA
8434261 AT
1 AT
8434263 GACCTCGTGA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.37
Consensus pattern (45 bp):
ATTGTATACACTTTACGAAAGCAATTCATCCAACTACTTTATCCA
Found at i:8435412 original size:16 final size:18
Alignment explanation
Indices: 8435393--8435430 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
8435383 TTCTCTTCTT
8435393 TTTTGTT-C-TTCATCTA
1 TTTTGTTACTTTCATCTA
*
8435409 TTTTGTTACTTTCTTCTA
1 TTTTGTTACTTTCATCTA
8435427 TTTT
1 TTTT
8435431 TCAATTTGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 7 0.37
17 1 0.05
18 11 0.58
ACGTcount: A:0.11, C:0.16, G:0.05, T:0.68
Consensus pattern (18 bp):
TTTTGTTACTTTCATCTA
Found at i:8435426 original size:18 final size:16
Alignment explanation
Indices: 8435386--8435430 Score: 54
Period size: 16 Copynumber: 2.7 Consensus size: 16
8435376 TTTTCTTTTC
*
8435386 TCTTCTTTTTTGTTCT
1 TCTTCTATTTTGTTCT
*
8435402 TCATCTATTTTGTTACTT
1 TCTTCTATTTTGTT-C-T
8435420 TCTTCTATTTT
1 TCTTCTATTTT
8435431 TCAATTTGTC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 12 0.50
17 1 0.04
18 11 0.46
ACGTcount: A:0.09, C:0.18, G:0.04, T:0.69
Consensus pattern (16 bp):
TCTTCTATTTTGTTCT
Found at i:8437707 original size:16 final size:16
Alignment explanation
Indices: 8437686--8437720 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
8437676 GGTTCCCTGG
*
8437686 AATGGAATAGGGCTGT
1 AATGGAATAGAGCTGT
8437702 AATGGAATAGAGCTGT
1 AATGGAATAGAGCTGT
8437718 AAT
1 AAT
8437721 CAATAATTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.37, C:0.06, G:0.31, T:0.26
Consensus pattern (16 bp):
AATGGAATAGAGCTGT
Found at i:8441316 original size:6 final size:6
Alignment explanation
Indices: 8441305--8441340 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
8441295 CACCCTCATT
*
8441305 TACACA TACACA TACACT TACACA TACACA TACACA
1 TACACA TACACA TACACA TACACA TACACA TACACA
8441341 AATTTAATGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.19
Consensus pattern (6 bp):
TACACA
Found at i:8441327 original size:18 final size:18
Alignment explanation
Indices: 8441304--8441339 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
8441294 CCACCCTCAT
8441304 TTACACATACACATACAC
1 TTACACATACACATACAC
8441322 TTACACATACACATACAC
1 TTACACATACACATACAC
8441340 AAATTTAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.33, G:0.00, T:0.22
Consensus pattern (18 bp):
TTACACATACACATACAC
Found at i:8464338 original size:30 final size:30
Alignment explanation
Indices: 8464304--8464363 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
8464294 GAATCTTGAG
*
8464304 TTAGAGCGTTGAGAGCCTCGCTCTTTTCCA
1 TTAGAGCATTGAGAGCCTCGCTCTTTTCCA
8464334 TTAGAGCATTGAGAGCCTCGCTCTTTTCCA
1 TTAGAGCATTGAGAGCCTCGCTCTTTTCCA
8464364 GAATATCCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.18, C:0.27, G:0.22, T:0.33
Consensus pattern (30 bp):
TTAGAGCATTGAGAGCCTCGCTCTTTTCCA
Found at i:8469771 original size:18 final size:18
Alignment explanation
Indices: 8469750--8469784 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8469740 CTAAAATTTT
8469750 ATAAAAATTAAAAAATAA
1 ATAAAAATTAAAAAATAA
* *
8469768 ATAAAGATTATAAAATA
1 ATAAAAATTAAAAAATA
8469785 TTCTAAATAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (18 bp):
ATAAAAATTAAAAAATAA
Done.