Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 260 of 276
Found at i:85926998 original size:116 final size:116
Alignment explanation
Indices: 85926858--85927083 Score: 436
Period size: 116 Copynumber: 1.9 Consensus size: 116
85926848 ATTAAAGGCT
85926858 TAGTGCACTGCAAGTGCAATAGCAAAGAACTCAAGGCAAACTAGTGATAAATTTCCAGTGTCGTG
1 TAGTGCACTGCAAGTGCAATAGCAAAGAACTCAAGGCAAACTAGTGATAAATTTCCAGTGTCGTG
85926923 ATGTTCGCATAAATTGCGATGATTCCAAAATAAAATAAAATAAAAAGACAA
66 ATGTTCGCATAAATTGCGATGATTCCAAAATAAAATAAAATAAAAAGACAA
85926974 TAGTGCACTGCAAGTGC-ATCAGCAAAGAACTCAAGGCAAACTAGTGATAAATTTCCAGTGTCGT
1 TAGTGCACTGCAAGTGCAAT-AGCAAAGAACTCAAGGCAAACTAGTGATAAATTTCCAGTGTCGT
85927038 GATGTTCGCATAAATTGCGATGATTCCAAAATAAAATAAAATAAAA
65 GATGTTCGCATAAATTGCGATGATTCCAAAATAAAATAAAATAAAA
85927084 TAAAAGGAAC
Statistics
Matches: 109, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
115 2 0.02
116 107 0.98
ACGTcount: A:0.42, C:0.16, G:0.18, T:0.24
Consensus pattern (116 bp):
TAGTGCACTGCAAGTGCAATAGCAAAGAACTCAAGGCAAACTAGTGATAAATTTCCAGTGTCGTG
ATGTTCGCATAAATTGCGATGATTCCAAAATAAAATAAAATAAAAAGACAA
Found at i:85929515 original size:19 final size:20
Alignment explanation
Indices: 85929491--85929531 Score: 75
Period size: 19 Copynumber: 2.1 Consensus size: 20
85929481 TATTTATATT
85929491 TAAAAATGAAAAGAA-TGAA
1 TAAAAATGAAAAGAATTGAA
85929510 TAAAAATGAAAAGAATTGAA
1 TAAAAATGAAAAGAATTGAA
85929530 TA
1 TA
85929532 TCTTCATTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.66, C:0.00, G:0.15, T:0.20
Consensus pattern (20 bp):
TAAAAATGAAAAGAATTGAA
Found at i:85930122 original size:35 final size:35
Alignment explanation
Indices: 85930064--85930146 Score: 130
Period size: 35 Copynumber: 2.3 Consensus size: 35
85930054 TACGAATTTG
*
85930064 AATCATGTGGTGTGATGGTTGTTTATCTTATCCCTT
1 AATCATGAGGT-TGATGGTTGTTTATCTTATCCCTT
*
85930100 AATCATGAGGTTGATTGTTGTTTATCTTATCCCTT
1 AATCATGAGGTTGATGGTTGTTTATCTTATCCCTT
*
85930135 AACCATGAGGTT
1 AATCATGAGGTT
85930147 AGACATTCGA
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
35 34 0.77
36 10 0.23
ACGTcount: A:0.20, C:0.14, G:0.20, T:0.45
Consensus pattern (35 bp):
AATCATGAGGTTGATGGTTGTTTATCTTATCCCTT
Found at i:85934870 original size:14 final size:14
Alignment explanation
Indices: 85934851--85934889 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
85934841 ATTTCACGAT
*
85934851 TTTTATTTGT-TTG
1 TTTTATTTGTGTCG
85934864 TTATTATTTGTGTCG
1 TT-TTATTTGTGTCG
85934879 TTTTATTTGTG
1 TTTTATTTGTG
85934890 AGGATGGTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 2 0.09
14 17 0.74
15 4 0.17
ACGTcount: A:0.10, C:0.03, G:0.18, T:0.69
Consensus pattern (14 bp):
TTTTATTTGTGTCG
Found at i:85940247 original size:150 final size:150
Alignment explanation
Indices: 85939976--85940280 Score: 610
Period size: 150 Copynumber: 2.0 Consensus size: 150
85939966 GACAGAGAAC
85939976 TTGTTTACTAACACTGTGTGCTTGTGTTTGTTTGTTTTGAATTGAAGAGAGGAAGAGAAGAAGGG
1 TTGTTTACTAACACTGTGTGCTTGTGTTTGTTTGTTTTGAATTGAAGAGAGGAAGAGAAGAAGGG
85940041 ATAGTGACCCCGGTTAGGCGTTCGAGCCGAATCCGAAACCAAGTCATGACTTCTCCATGATGATG
66 ATAGTGACCCCGGTTAGGCGTTCGAGCCGAATCCGAAACCAAGTCATGACTTCTCCATGATGATG
85940106 GAAAGAGCTTGTGTAGTTAG
131 GAAAGAGCTTGTGTAGTTAG
85940126 TTGTTTACTAACACTGTGTGCTTGTGTTTGTTTGTTTTGAATTGAAGAGAGGAAGAGAAGAAGGG
1 TTGTTTACTAACACTGTGTGCTTGTGTTTGTTTGTTTTGAATTGAAGAGAGGAAGAGAAGAAGGG
85940191 ATAGTGACCCCGGTTAGGCGTTCGAGCCGAATCCGAAACCAAGTCATGACTTCTCCATGATGATG
66 ATAGTGACCCCGGTTAGGCGTTCGAGCCGAATCCGAAACCAAGTCATGACTTCTCCATGATGATG
85940256 GAAAGAGCTTGTGTAGTTAG
131 GAAAGAGCTTGTGTAGTTAG
85940276 TTGTT
1 TTGTT
85940281 ACAATTTGCA
Statistics
Matches: 155, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
150 155 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (150 bp):
TTGTTTACTAACACTGTGTGCTTGTGTTTGTTTGTTTTGAATTGAAGAGAGGAAGAGAAGAAGGG
ATAGTGACCCCGGTTAGGCGTTCGAGCCGAATCCGAAACCAAGTCATGACTTCTCCATGATGATG
GAAAGAGCTTGTGTAGTTAG
Found at i:85940924 original size:194 final size:194
Alignment explanation
Indices: 85940595--85940984 Score: 762
Period size: 194 Copynumber: 2.0 Consensus size: 194
85940585 AGACTACAAT
85940595 ATTTTGTTTTATTTTTAGGTGAAATTGCTTAACAGGTCCTATTATAAGGGCAAGATCAAATTTTA
1 ATTTTGTTTTATTTTTAGGTGAAATTGCTTAACAGGTCCTATTATAAGGGCAAGATCAAATTTTA
85940660 GTAATAGATCAAATTATGATAGAGGAACTTAATATACATTATCCTATACTTTTATATTACGGTCA
66 GTAATAGATCAAATTATGATAGAGGAACTTAATATACATTATCCTATACTTTTATATTACGGTCA
*
85940725 TCATTGTTTGAACGAGACCAATCAATCGAACTAAAAATCGATTAAGGTATTGGTTTGGAGAGTG
131 TCATTGTTTGAACCAGACCAATCAATCGAACTAAAAATCGATTAAGGTATTGGTTTGGAGAGTG
85940789 ATTTTGTTTTATTTTTAGGTGAAATTGCTTAACAGGTCCTATTATAAGGGCAAGATCAAATTTTA
1 ATTTTGTTTTATTTTTAGGTGAAATTGCTTAACAGGTCCTATTATAAGGGCAAGATCAAATTTTA
85940854 GTAATAGATCAAATTATGATAGAGGAACTTAATATACATTATCCTATACTTTTATATTACGGTCA
66 GTAATAGATCAAATTATGATAGAGGAACTTAATATACATTATCCTATACTTTTATATTACGGTCA
*
85940919 TCATTGTTTGAACCAGACCAATCAATCGAACTAAGAATCGATTAAGGTATTGGTTTGGAGAGTG
131 TCATTGTTTGAACCAGACCAATCAATCGAACTAAAAATCGATTAAGGTATTGGTTTGGAGAGTG
85940983 AT
1 AT
85940985 GTTAAATTGA
Statistics
Matches: 194, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
194 194 1.00
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (194 bp):
ATTTTGTTTTATTTTTAGGTGAAATTGCTTAACAGGTCCTATTATAAGGGCAAGATCAAATTTTA
GTAATAGATCAAATTATGATAGAGGAACTTAATATACATTATCCTATACTTTTATATTACGGTCA
TCATTGTTTGAACCAGACCAATCAATCGAACTAAAAATCGATTAAGGTATTGGTTTGGAGAGTG
Found at i:85946750 original size:12 final size:12
Alignment explanation
Indices: 85946729--85946762 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
85946719 TTATTTGTTT
85946729 CTTATTTTAATA
1 CTTATTTTAATA
*
85946741 CTTGTTTTAATA
1 CTTATTTTAATA
*
85946753 TTTATTTTAA
1 CTTATTTTAA
85946763 ATGTATTTGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.62
Consensus pattern (12 bp):
CTTATTTTAATA
Found at i:85947980 original size:46 final size:46
Alignment explanation
Indices: 85947913--85948133 Score: 293
Period size: 46 Copynumber: 4.8 Consensus size: 46
85947903 TGATGTCATA
* * * * *
85947913 GTATCTTTCAACTATGGTTTTACTCGTTTTC-TGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTC-ATTTCATATCAGGTTGCCATG
* * *
85947959 GTATCTTTCAACCATGGTTTTACTCATTTCATGTCAGGTTGTCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
* *
85948005 GTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
* *
85948051 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCACG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
*
85948097 GTATCTTTCAACCATGGTCTTACACA-TTCTATATCAG
1 GTATCTTTCAACCATGGTCTTACTCATTTC-ATATCAG
85948134 AGAGCACACT
Statistics
Matches: 160, Mismatches: 13, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
45 7 0.04
46 153 0.96
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (46 bp):
GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
Found at i:85953204 original size:14 final size:14
Alignment explanation
Indices: 85953167--85953197 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
85953157 CCAGAAAAGT
85953167 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
85953181 AAATCATTTTCCGG
1 AAATCATTTTCCAG
85953195 AAA
1 AAA
85953198 ATATTTTACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:85954558 original size:125 final size:128
Alignment explanation
Indices: 85954330--85954584 Score: 311
Period size: 125 Copynumber: 2.0 Consensus size: 128
85954320 GCTTGTCTTC
* * *
85954330 TATTTCATTTAAAACTCATGTATTTAAATTTTAAAAAGGATATTTGAATATTTAGATCAAACAAA
1 TATTTCATTTAAAACTCATGTATTTAAATTTTAAAAAGGATAATCGAATACTTAGATCAAACAAA
* * * * * **
85954395 AAAATCGAAACCCAGTACGTTAGGGCACGACTACTCGAA-TTTCTAAATACGGAATATTGCCTT
66 AAAACCAAAACCCAATACGTTACGACACGACTACTCGAATTTTC-AAATACCAAATATTGCCTT
* * ** *
85954458 TATTTTATTTAAAACTCATGTATTTTAA-TTT-AAAAGGATAATCGGTTACTTAGATCAAAC-GA
1 TATTTCATTTAAAACTCATGTATTTAAATTTTAAAAAGGATAATCGAATACTTAGATCAAACAAA
* * *
85954520 AAAACCAAAACCCAATACGTTACGACACGATTTCTCGAATTTTCAAGTACCAAATATTGCCTT
66 AAAACCAAAACCCAATACGTTACGACACGACTACTCGAATTTTCAAATACCAAATATTGCCTT
85954583 TA
1 TA
85954585 CTTGAAAAAT
Statistics
Matches: 108, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
125 51 0.47
126 28 0.26
127 3 0.03
128 26 0.24
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.33
Consensus pattern (128 bp):
TATTTCATTTAAAACTCATGTATTTAAATTTTAAAAAGGATAATCGAATACTTAGATCAAACAAA
AAAACCAAAACCCAATACGTTACGACACGACTACTCGAATTTTCAAATACCAAATATTGCCTT
Found at i:85954889 original size:28 final size:26
Alignment explanation
Indices: 85954828--85954890 Score: 74
Period size: 25 Copynumber: 2.4 Consensus size: 26
85954818 TAGTGTTAAA
* *
85954828 AATAATAATAATAATAAACAAACGAT
1 AATAATAATGATAATAAAAAAACGAT
*
85954854 -ATATTAATGATAATAGAAAATAACGAT
1 AATAATAATGATAATA-AAAA-AACGAT
85954881 AATAATAATG
1 AATAATAATG
85954891 GAAGTAACGA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
25 13 0.43
26 3 0.10
27 6 0.20
28 8 0.27
ACGTcount: A:0.60, C:0.05, G:0.08, T:0.27
Consensus pattern (26 bp):
AATAATAATGATAATAAAAAAACGAT
Found at i:85954953 original size:15 final size:16
Alignment explanation
Indices: 85954899--85954954 Score: 53
Period size: 15 Copynumber: 3.5 Consensus size: 16
85954889 TGGAAGTAAC
85954899 GAAAATAATAATAATA
1 GAAAATAATAATAATA
* *
85954915 G-AAACAATAGTAATA
1 GAAAATAATAATAATA
*
85954930 -AAAGTAATAATAAAATA
1 GAAAATAATAAT--AATA
85954947 GAAAATAA
1 GAAAATAA
85954955 CAATGAGACA
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
15 19 0.63
16 1 0.03
17 4 0.13
18 6 0.20
ACGTcount: A:0.68, C:0.02, G:0.09, T:0.21
Consensus pattern (16 bp):
GAAAATAATAATAATA
Found at i:85955278 original size:25 final size:24
Alignment explanation
Indices: 85955227--85955278 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
85955217 ATCTCGTGTA
* *
85955227 TTTCTTGTATTGAAAGCCTCTCTT
1 TTTCTTGTATTCAAAGCCTCTCCT
* *
85955251 TTTCTTGTATTCTAATCTCTCTCCT
1 TTTCTTGTATTCAAAGC-CTCTCCT
85955276 TTT
1 TTT
85955279 TTCTCCAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 14 0.61
25 9 0.39
ACGTcount: A:0.13, C:0.23, G:0.08, T:0.56
Consensus pattern (24 bp):
TTTCTTGTATTCAAAGCCTCTCCT
Found at i:85955410 original size:24 final size:24
Alignment explanation
Indices: 85955378--85955427 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
85955368 TCTTTTTGTA
85955378 GGCAAGTGGGGTGATAGAGTTAGT
1 GGCAAGTGGGGTGATAGAGTTAGT
*
85955402 GGCAAGTGGGGTGATGGAGTTAGT
1 GGCAAGTGGGGTGATAGAGTTAGT
85955426 GG
1 GG
85955428 TTGGTTTAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.22, C:0.04, G:0.50, T:0.24
Consensus pattern (24 bp):
GGCAAGTGGGGTGATAGAGTTAGT
Found at i:85957473 original size:13 final size:13
Alignment explanation
Indices: 85957439--85957474 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
85957429 TTTGGCAATA
85957439 CTTTTGAAAAGTG
1 CTTTTGAAAAGTG
* *
85957452 CTGTGGAAAAGTG
1 CTTTTGAAAAGTG
85957465 CTTTTGAAAA
1 CTTTTGAAAA
85957475 CTTTGGTTTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.33, C:0.08, G:0.25, T:0.33
Consensus pattern (13 bp):
CTTTTGAAAAGTG
Found at i:85969557 original size:20 final size:20
Alignment explanation
Indices: 85969532--85969569 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
85969522 CGGAAAGAGC
*
85969532 AAAATATTGCAAAAAAATTA
1 AAAATATTACAAAAAAATTA
85969552 AAAATATTACAAAAAAAT
1 AAAATATTACAAAAAAAT
85969570 ATTACAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.68, C:0.05, G:0.03, T:0.24
Consensus pattern (20 bp):
AAAATATTACAAAAAAATTA
Found at i:85969567 original size:13 final size:13
Alignment explanation
Indices: 85969551--85969579 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
85969541 CAAAAAAATT
85969551 AAAAATATTACAA
1 AAAAATATTACAA
85969564 AAAAATATTACAA
1 AAAAATATTACAA
85969577 AAA
1 AAA
85969580 TGAAAAAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.72, C:0.07, G:0.00, T:0.21
Consensus pattern (13 bp):
AAAAATATTACAA
Found at i:85971622 original size:43 final size:43
Alignment explanation
Indices: 85971571--85971675 Score: 113
Period size: 43 Copynumber: 2.4 Consensus size: 43
85971561 TCCTAGATAT
* * * *
85971571 GGTCTTACATGTTATCACATATCGATG-CATCTGTCCCAAACAG
1 GGTCTTACACGTAATCACATATCAATGCCA-ATGTCCCAAACAG
* * *
85971614 GGTCTTACACGTAATCTCATATCAATGCCAATGTCCCAGACAT
1 GGTCTTACACGTAATCACATATCAATGCCAATGTCCCAAACAG
* *
85971657 GGTCTTACCCGAAATCACA
1 GGTCTTACACGTAATCACA
85971676 CCTCGGAAGT
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
43 49 0.96
44 2 0.04
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (43 bp):
GGTCTTACACGTAATCACATATCAATGCCAATGTCCCAAACAG
Found at i:85971856 original size:35 final size:31
Alignment explanation
Indices: 85971791--85971860 Score: 77
Period size: 32 Copynumber: 2.1 Consensus size: 31
85971781 TCTAATGCTT
* *
85971791 AATTTAATTAGGCAACATATATATTTATTTA
1 AATTCAATTAGGCAACATATATATTGATTTA
*
85971822 CAATTCAATTCGGCAACATATAATATATAGATTTA
1 -AATTCAATTAGGCAACATAT-ATAT-T-GATTTA
85971857 AATT
1 AATT
85971861 TAATAACATT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
32 18 0.56
33 4 0.12
34 5 0.16
35 5 0.16
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (31 bp):
AATTCAATTAGGCAACATATATATTGATTTA
Found at i:85972568 original size:14 final size:14
Alignment explanation
Indices: 85972549--85972575 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
85972539 TGAAAATGGT
85972549 TTTATTTTATTTAA
1 TTTATTTTATTTAA
85972563 TTTATTTTATTTA
1 TTTATTTTATTTA
85972576 CTATTTGACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTATTTTATTTAA
Found at i:85979206 original size:73 final size:73
Alignment explanation
Indices: 85979087--85979232 Score: 283
Period size: 73 Copynumber: 2.0 Consensus size: 73
85979077 ACTTAGTAAG
85979087 CCATAAGCAAATAATTCATCACAAGAACATATATAATTTAATTCGAATATGCCAAATTTAGCTAA
1 CCATAAGCAAATAATTCATCACAAGAACATATATAATTTAATTCGAATATGCCAAATTTAGCTAA
85979152 CCTCATAC
66 CCTCATAC
85979160 CCATAAGCAAATAATTCATCACAAGAACATATATAATTTAATTCGAATATGCCAAATTTAGCTAA
1 CCATAAGCAAATAATTCATCACAAGAACATATATAATTTAATTCGAATATGCCAAATTTAGCTAA
*
85979225 TCTCATAC
66 CCTCATAC
85979233 ATATACAATC
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 72 1.00
ACGTcount: A:0.44, C:0.20, G:0.07, T:0.29
Consensus pattern (73 bp):
CCATAAGCAAATAATTCATCACAAGAACATATATAATTTAATTCGAATATGCCAAATTTAGCTAA
CCTCATAC
Found at i:85984253 original size:122 final size:122
Alignment explanation
Indices: 85984034--85984276 Score: 405
Period size: 122 Copynumber: 2.0 Consensus size: 122
85984024 AATACTGGTG
*
85984034 CACCCCAAGGTGAGAAACTTGGTCGAGCAAAACCTCTATCCGTCAATTCTTGCAACTGAGCTTTC
1 CACCCCAAGGTGAGAAACTTGGTCGAGCAAAACCTCTATCCGTCAACTCTTGCAACTGAGCTTTC
* * *
85984099 AACTCTTTTAACTCGGTTGGTGCCATACGATACGGAGCTATCGAAATCGGCGTAGTC
66 AACTCCTTTAACTCGGTTAGTGCCATACGATACGGAGCTATCAAAATCGGCGTAGTC
* *
85984156 CACCCCAAGGTGAGAAACTTGGTCGAGCGAAACCTCTATCCGTCAACTCTTGCAATTGAGCTTTC
1 CACCCCAAGGTGAGAAACTTGGTCGAGCAAAACCTCTATCCGTCAACTCTTGCAACTGAGCTTTC
* * *
85984221 AATTCCTTTAACTCGGTTAGTGCCATATGATACGGAGCTATCAAAATTGGCGTAGT
66 AACTCCTTTAACTCGGTTAGTGCCATACGATACGGAGCTATCAAAATCGGCGTAGT
85984277 TCCAGGTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
122 112 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (122 bp):
CACCCCAAGGTGAGAAACTTGGTCGAGCAAAACCTCTATCCGTCAACTCTTGCAACTGAGCTTTC
AACTCCTTTAACTCGGTTAGTGCCATACGATACGGAGCTATCAAAATCGGCGTAGTC
Found at i:85986740 original size:197 final size:197
Alignment explanation
Indices: 85986403--85986796 Score: 743
Period size: 197 Copynumber: 2.0 Consensus size: 197
85986393 TTTAAAAATC
* *
85986403 ATATCTTGAGTTCTGAAACTCAAAATCCAGTTCCGTAAATTTTCCCTGGAACTAGACTCATATAC
1 ATATCTTGAGTTATAAAACTCAAAATCCAGTTCCGTAAATTTTCCCTGGAACTAGACTCATATAC
85986468 CTATATGGTAGAATTTTTGTAGAATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTTAAATTC
66 CTATATGGTAGAATTTTTGTAGAATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTTAAATTC
85986533 TCCCCTATTACAGGGTGCGACTACACTGACCTTCATGCATTACGATTTGGATAACTCCCTCCACA
131 TCCCCTATTACAGGGTGCGACTACACTGACCTTCATGCATTACGATTTGGATAACTCCCTCCACA
85986598 GA
196 GA
85986600 ATATCTTGAGTTATAAAACTCAAAATCCAGTTCCGTAAATTTTCCCTGGAACTAGACTCATATAC
1 ATATCTTGAGTTATAAAACTCAAAATCCAGTTCCGTAAATTTTCCCTGGAACTAGACTCATATAC
*
85986665 CTATATGGTAGAATTTTTTTAGAATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTTAAATTC
66 CTATATGGTAGAATTTTTGTAGAATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTTAAATTC
* *
85986730 TCCGCTATTACAGGGTGCGACTACACTGACCTTCATGCATTACGATTTGGATAACTCCCTGCACA
131 TCCCCTATTACAGGGTGCGACTACACTGACCTTCATGCATTACGATTTGGATAACTCCCTCCACA
85986795 GA
196 GA
85986797 GCTTCAATAC
Statistics
Matches: 192, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
197 192 1.00
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (197 bp):
ATATCTTGAGTTATAAAACTCAAAATCCAGTTCCGTAAATTTTCCCTGGAACTAGACTCATATAC
CTATATGGTAGAATTTTTGTAGAATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTTAAATTC
TCCCCTATTACAGGGTGCGACTACACTGACCTTCATGCATTACGATTTGGATAACTCCCTCCACA
GA
Found at i:85987352 original size:200 final size:200
Alignment explanation
Indices: 85987009--85987409 Score: 784
Period size: 200 Copynumber: 2.0 Consensus size: 200
85986999 TTCTATATGA
*
85987009 AAATAGACTCATTGAGCTTCGATTACATAATTTATTCACTATTTAATTCCATTCCTACTAATTTT
1 AAATAGACTCATCGAGCTTCGATTACATAATTTATTCACTATTTAATTCCATTCCTACTAATTTT
85987074 TGTAATTTTTCAATCCCACGTCACTGCTGCTGCCAGCATCTGTTACTGAAGCAACTATGCCCATT
66 TGTAATTTTTCAATCCCACGTCACTGCTGCTGCCAGCATCTGTTACTGAAGCAACTATGCCCATT
85987139 TCGTGATTTCTCATTGATCTAACTAGTAATTCATCATACATATCACAAAATTATAATCATGACTA
131 TCGTGATTTCTCATTGATCTAACTAGTAATTCATCATACATATCACAAAATTATAATCATGACTA
85987204 GCCAT
196 GCCAT
*
85987209 AAATAGACTCATCGATCTTCGATTACATAATTTATTCACTATTTAATTCCATTCCTACTAATTTT
1 AAATAGACTCATCGAGCTTCGATTACATAATTTATTCACTATTTAATTCCATTCCTACTAATTTT
85987274 TGTAATTTTTCAATCCCACGTCACTGCTGCTGCCAGCATCTGTTACTGAAGCAACTATGCCCATT
66 TGTAATTTTTCAATCCCACGTCACTGCTGCTGCCAGCATCTGTTACTGAAGCAACTATGCCCATT
85987339 TCGTGATTTCTCATTGATCTAACTAGTAATTCATCATACATATCACAAAATTATAATCATGACTA
131 TCGTGATTTCTCATTGATCTAACTAGTAATTCATCATACATATCACAAAATTATAATCATGACTA
85987404 GCCAT
196 GCCAT
85987409 A
1 A
85987410 CCAAAGGCTA
Statistics
Matches: 199, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
200 199 1.00
ACGTcount: A:0.31, C:0.23, G:0.10, T:0.37
Consensus pattern (200 bp):
AAATAGACTCATCGAGCTTCGATTACATAATTTATTCACTATTTAATTCCATTCCTACTAATTTT
TGTAATTTTTCAATCCCACGTCACTGCTGCTGCCAGCATCTGTTACTGAAGCAACTATGCCCATT
TCGTGATTTCTCATTGATCTAACTAGTAATTCATCATACATATCACAAAATTATAATCATGACTA
GCCAT
Found at i:85988280 original size:28 final size:28
Alignment explanation
Indices: 85988217--85988367 Score: 223
Period size: 28 Copynumber: 5.4 Consensus size: 28
85988207 ATATTAAGTC
*
85988217 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
85988244 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
85988272 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
85988300 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
85988328 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
85988357 CGCACACTTAG
1 CGCACACTTAG
85988368 CGCCAATCTC
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 22 0.19
28 77 0.67
29 16 0.14
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:85992800 original size:48 final size:48
Alignment explanation
Indices: 85992604--85992832 Score: 193
Period size: 48 Copynumber: 4.9 Consensus size: 48
85992594 GGGTTATGTA
* **
85992604 TGATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATTGATATG
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATATG
* ** * * *
85992652 TAATTTCGTGTAAGACCATAG-CTGGG-C-T---ATCGGTATCAATATG
1 TGATCCCATGTAAGACCAT-GTCTGGGACATGGCATTGGCATCAATATG
* * * ** *
85992695 TGAT-CCATTGTAAGACCATGTTTGGGACATGACATTGACATCAACCTA
1 TGATCCCA-TGTAAGACCATGTCTGGGACATGGCATTGGCATCAATATG
* **
85992743 CGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATG
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATATG
* * * *
85992791 TGATACCATGTAAGACCATATCCGGGATATGGCATTGGCATC
1 TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
85992833 CTACCATGTG
Statistics
Matches: 138, Mismatches: 34, Indels: 18
0.73 0.18 0.09
Matches are distributed among these distances:
42 2 0.01
43 28 0.20
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 100 0.72
49 4 0.03
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (48 bp):
TGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATATG
Found at i:85999520 original size:11 final size:11
Alignment explanation
Indices: 85999504--85999537 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
85999494 AAACCTCAAA
85999504 TTTTTCCTTTC
1 TTTTTCCTTTC
85999515 TTTTTCCTTT-
1 TTTTTCCTTTC
85999525 TTTTT-CTTTC
1 TTTTTCCTTTC
85999535 TTT
1 TTT
85999538 CCCTTCTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 4 0.18
10 8 0.36
11 10 0.45
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (11 bp):
TTTTTCCTTTC
Found at i:86009173 original size:55 final size:53
Alignment explanation
Indices: 86009061--86009358 Score: 319
Period size: 55 Copynumber: 5.5 Consensus size: 53
86009051 AACTTACCAT
* * * *
86009061 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCTTTAC-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTACAGAACTCATCAA
* * *
86009114 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTAACATAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTT-ACAGAACTCATCAA
* * * * * *
86009169 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTACAGAACTCATCAA
* * *
86009223 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTAACATAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTT-ACAGAACTCATCAA
* * * * * *
86009278 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTACAGAACTCATCAA
*
86009332 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
86009359 ATAACCTTAT
Statistics
Matches: 202, Mismatches: 36, Indels: 13
0.80 0.14 0.05
Matches are distributed among these distances:
52 2 0.01
53 34 0.17
54 80 0.40
55 82 0.41
56 4 0.02
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTACAGAACTCATCAA
Found at i:86009242 original size:54 final size:54
Alignment explanation
Indices: 86009061--86009360 Score: 302
Period size: 54 Copynumber: 5.5 Consensus size: 54
86009051 AACTTACCAT
* * * * * *
86009061 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTT-GCTT-TACGAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGATGTCCTTACCTTATA-GAACTCATCAA
* * * * * *
86009114 TGCCATGCCTTGGCATGGTCTTACATG-GGACCTTTGCCTTAACATAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATGTCC-TTACCTT-ATAGAACTCATCAA
* * *
86009169 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATGTCCTTACCTTATAGAACTCATCAA
* * * * * *
86009223 TGCCATGCCTTGGCATGGTCTTACATG-GGACCTTTGCCTTAACATAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATGTCC-TTACCTT-ATAGAACTCATCAA
* * *
86009278 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATGTCCTTACCTTATAGAACTCATCAA
*
86009332 TGCCATGCCTTGGCATGGTCTTACATGAT
1 TGCCATGCCTTGACATGGTCTTACATGAT
86009361 AACCTTATCT
Statistics
Matches: 200, Mismatches: 39, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
52 2 0.01
53 28 0.14
54 83 0.41
55 82 0.41
56 5 0.03
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGATGTCCTTACCTTATAGAACTCATCAA
Found at i:86009251 original size:109 final size:109
Alignment explanation
Indices: 86009061--86009358 Score: 519
Period size: 109 Copynumber: 2.7 Consensus size: 109
86009051 AACTTACCAT
* * * * * *
86009061 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTT-GCTT-TACGAACTCACCAATGCCATGCCT
1 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTATA-GAACTTATCAATGCCATGCCT
86009124 TGGCATGGTCTTACATGGGACCTTTGCCTTAACATAACTCATCAA
65 TGGCATGGTCTTACATGGGACCTTTGCCTTAACATAACTCATCAA
86009169 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTATAGAACTTATCAATGCCATGCCTT
1 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTATAGAACTTATCAATGCCATGCCTT
86009234 GGCATGGTCTTACATGGGACCTTTGCCTTAACATAACTCATCAA
66 GGCATGGTCTTACATGGGACCTTTGCCTTAACATAACTCATCAA
86009278 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTATAGAACTTATCAATGCCATGCCTT
1 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTATAGAACTTATCAATGCCATGCCTT
86009343 GGCATGGTCTTACATG
66 GGCATGGTCTTACATG
86009359 ATAACCTTAT
Statistics
Matches: 182, Mismatches: 6, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
108 32 0.18
109 148 0.81
110 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (109 bp):
TGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTATAGAACTTATCAATGCCATGCCTT
GGCATGGTCTTACATGGGACCTTTGCCTTAACATAACTCATCAA
Found at i:86009398 original size:47 final size:47
Alignment explanation
Indices: 86009345--86009466 Score: 190
Period size: 47 Copynumber: 2.6 Consensus size: 47
86009335 CATGCCTTGG
* * * * *
86009345 CATGGTCTTACATGATAACCTTATCTTACCAAATGTCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGGTCCAAA
*
86009392 CATGGTCTTATATGGTATCCTTGTCTTACCAAATGCCATGGTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGGTCCAAA
86009439 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
86009467 GTGCCAATGC
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGGTCCAAA
Found at i:86035167 original size:12 final size:12
Alignment explanation
Indices: 86035146--86035179 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
86035136 TATATATTTT
*
86035146 AAAATTATATAA
1 AAAATAATATAA
86035158 AAAATAATATAA
1 AAAATAATATAA
*
86035170 AAATTAATAT
1 AAAATAATAT
86035180 GGGCTGGTCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATAATATAA
Found at i:86038400 original size:37 final size:37
Alignment explanation
Indices: 86038347--86038449 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
86038337 CGAATAGTCA
*
86038347 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
86038384 TCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
86038421 CCACACGCAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
86038450 ATATATTTCC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:86038660 original size:48 final size:48
Alignment explanation
Indices: 86038606--86039403 Score: 1596
Period size: 48 Copynumber: 16.6 Consensus size: 48
86038596 GCCGAATCAC
86038606 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
86038654 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
86038702 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
86038750 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
86038798 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
86038846 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
86038894 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
86038942 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
86038990 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
86039038 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
86039086 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
86039134 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
86039182 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
86039230 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
86039278 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
86039326 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
86039374 TAGCCATTCGGCTTTACCACATATACATAT
1 TAGCCATTCGGCTTTACCACATATACATAT
86039404 TTCACATTAG
Statistics
Matches: 750, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 750 1.00
ACGTcount: A:0.29, C:0.27, G:0.08, T:0.35
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
Found at i:86039412 original size:37 final size:37
Alignment explanation
Indices: 86039359--86039440 Score: 155
Period size: 37 Copynumber: 2.2 Consensus size: 37
86039349 TACATATCTC
*
86039359 ATACATATTTCGCATTAGCCATTCGGCTTTACCACAT
1 ATACATATTTCACATTAGCCATTCGGCTTTACCACAT
86039396 ATACATATTTCACATTAGCCATTCGGCTTTACCACAT
1 ATACATATTTCACATTAGCCATTCGGCTTTACCACAT
86039433 ATACATAT
1 ATACATAT
86039441 ATATTTATCT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.30, C:0.26, G:0.09, T:0.35
Consensus pattern (37 bp):
ATACATATTTCACATTAGCCATTCGGCTTTACCACAT
Found at i:86043023 original size:29 final size:29
Alignment explanation
Indices: 86042966--86043098 Score: 128
Period size: 29 Copynumber: 4.7 Consensus size: 29
86042956 CTGACCGATT
* * *
86042966 TCGCACACATAGCG-CTCGATTATAGAAC
1 TCGCACACATAGTGCCTCAATTAAAGAAC
*
86042994 TTGCACACATAGTGCCTCAATTAAAGAAC
1 TCGCACACATAGTGCCTCAATTAAAGAAC
* * *
86043023 TCACACACATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTGCCTCAATTA-AAGAAC
* * *
86043052 TCGCACACATAGCG-CTCGATTGAAGAAC
1 TCGCACACATAGTGCCTCAATTAAAGAAC
* *
86043080 TTGCACACACAGTGCCTCA
1 TCGCACACATAGTGCCTCA
86043099 TAATTCCAGC
Statistics
Matches: 83, Mismatches: 18, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
27 1 0.01
28 31 0.37
29 50 0.60
30 1 0.01
ACGTcount: A:0.33, C:0.30, G:0.15, T:0.22
Consensus pattern (29 bp):
TCGCACACATAGTGCCTCAATTAAAGAAC
Found at i:86043171 original size:40 final size:40
Alignment explanation
Indices: 86043106--86043220 Score: 171
Period size: 40 Copynumber: 2.9 Consensus size: 40
86043096 TCATAATTCC
*
86043106 AGCACGAATGC-CTTCGAGG-TTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCG-GGACTTAGCCCGGATATATCACT
* *
86043145 AGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
86043185 AGCACGAATGCTCTTCGGGACTTAGCCCGGCTATAT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
86043221 AACTCTCAAT
Statistics
Matches: 68, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
39 13 0.19
40 55 0.81
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
Found at i:86044554 original size:37 final size:37
Alignment explanation
Indices: 86044498--86044600 Score: 172
Period size: 37 Copynumber: 2.8 Consensus size: 37
86044488 CGAATAGTCC
*
86044498 CCACACGTAG-CTATAGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTC-ATCGGGTCTTACCCGGACAAAATCT
*
86044535 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
86044572 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
86044601 ATATATTTCC
Statistics
Matches: 63, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
37 62 0.98
38 1 0.02
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.22
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:86044827 original size:48 final size:48
Alignment explanation
Indices: 86044773--86045033 Score: 400
Period size: 48 Copynumber: 5.6 Consensus size: 48
86044763 GCCGAATCAC
*
86044773 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
86044821 TAGCCATTCGGCTTTACCAC--AT--ATA---CATAC----TTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
86044858 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
86044906 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
86044954 TAGCCATTCGGCTTTACCGCATATACATATCTCAAATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACAT
86045004 TAGCCATTCGGCTTTACCACATATACATAT
1 TAGCCATTCGGCTTTACCACATATACATAT
86045034 ATATTTATCT
Statistics
Matches: 197, Mismatches: 3, Indels: 24
0.88 0.01 0.11
Matches are distributed among these distances:
37 26 0.13
39 2 0.01
41 8 0.04
44 8 0.04
46 2 0.01
48 107 0.54
50 44 0.22
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.34
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
Found at i:86044859 original size:37 final size:37
Alignment explanation
Indices: 86044806--86044886 Score: 144
Period size: 37 Copynumber: 2.2 Consensus size: 37
86044796 TACATATCTC
* *
86044806 ATACATATTTCGCATTAGCCATTCGGCTTTACCACAT
1 ATACATACTTCACATTAGCCATTCGGCTTTACCACAT
86044843 ATACATACTTCACATTAGCCATTCGGCTTTACCACAT
1 ATACATACTTCACATTAGCCATTCGGCTTTACCACAT
86044880 ATACATA
1 ATACATA
86044887 TCTCATACAT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.31, C:0.27, G:0.09, T:0.33
Consensus pattern (37 bp):
ATACATACTTCACATTAGCCATTCGGCTTTACCACAT
Found at i:86044897 original size:85 final size:85
Alignment explanation
Indices: 86044773--86045032 Score: 376
Period size: 85 Copynumber: 2.9 Consensus size: 85
86044763 GCCGAATCAC
*
86044773 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCATTAGCCATTCGGCTTTAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTAC
86044838 CACATATACATACTTCACAT
66 CACATATACATACTTCACAT
86044858 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA-
*
86044923 CGCATATACATATCTCATACATATTTCACAT
65 C-C----AC--A--T-ATACATACTTCACAT
*
86044954 TAGCCATTCGGCTTTACCGCATATACATATCTCAAATACATATTTCACATTAGCCATTCGGCTTT
1 TAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGCCATTCGGCTTT
86045019 ACCACATATACATA
64 ACCACATATACATA
86045033 TATATTTATC
Statistics
Matches: 159, Mismatches: 3, Indels: 24
0.85 0.02 0.13
Matches are distributed among these distances:
85 63 0.40
86 1 0.01
87 8 0.05
88 1 0.01
90 1 0.01
91 2 0.01
92 2 0.01
93 1 0.01
95 1 0.01
96 47 0.30
97 1 0.01
98 31 0.19
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.34
Consensus pattern (85 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTAC
CACATATACATACTTCACAT
Found at i:86050897 original size:28 final size:28
Alignment explanation
Indices: 86050834--86051127 Score: 554
Period size: 28 Copynumber: 10.5 Consensus size: 28
86050824 ATATTAAGTC
* *
86050834 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
86050861 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
86050889 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
86050917 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
86050945 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
86050973 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
86051001 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
86051029 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
86051057 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
86051085 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
86051113 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
86051128 GTACAATTTA
Statistics
Matches: 264, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
27 22 0.08
28 242 0.92
ACGTcount: A:0.35, C:0.29, G:0.11, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:86059185 original size:29 final size:27
Alignment explanation
Indices: 86059167--86059236 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
86059157 ATATTAAGTC
86059167 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
86059194 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
86059222 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
86059237 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:86059230 original size:28 final size:28
Alignment explanation
Indices: 86059167--86059264 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
86059157 ATATTAAGTC
*
86059167 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
86059194 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
86059222 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
86059251 CGCACACTTAGTGC
1 CGCACACTTAGTGC
86059265 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:86059722 original size:2 final size:2
Alignment explanation
Indices: 86059715--86059744 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
86059705 CATACTTGTG
86059715 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
86059745 CTTCGGAATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:86073297 original size:10 final size:10
Alignment explanation
Indices: 86073265--86073312 Score: 53
Period size: 10 Copynumber: 4.8 Consensus size: 10
86073255 TTAAATTCTA
*
86073265 AAAGATAAAT
1 AAAGATAATT
*
86073275 ACAA-ATAAAT
1 A-AAGATAATT
*
86073285 AAAGTTAATT
1 AAAGATAATT
86073295 AAAGATAATT
1 AAAGATAATT
86073305 AAAGATAA
1 AAAGATAA
86073313 AAAAACAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
9 2 0.06
10 29 0.88
11 2 0.06
ACGTcount: A:0.65, C:0.02, G:0.08, T:0.25
Consensus pattern (10 bp):
AAAGATAATT
Found at i:86075374 original size:10 final size:8
Alignment explanation
Indices: 86075352--86075454 Score: 75
Period size: 10 Copynumber: 11.8 Consensus size: 8
86075342 TAATAACCAA
86075352 AATAAAAT
1 AATAAAAT
86075360 AATAAATACT
1 AATAAA-A-T
86075370 AATAAAAT
1 AATAAAAT
86075378 GAAATAAAAT
1 --AATAAAAT
86075388 AATAAATACT
1 AATAAA-A-T
86075398 AATAAAAT
1 AATAAAAT
86075406 GAAATAAAAT
1 --AATAAAAT
86075416 AAT-AAAT
1 AATAAAAT
86075423 AATGAAAATT
1 AAT-AAAA-T
*
86075433 AAGAAAAGT
1 AATAAAA-T
*
86075442 AA-AAAAA
1 AATAAAAT
86075449 AATAAA
1 AATAAA
86075455 GGTTGGGTTG
Statistics
Matches: 80, Mismatches: 3, Indels: 24
0.75 0.03 0.22
Matches are distributed among these distances:
7 9 0.11
8 24 0.30
9 14 0.17
10 33 0.41
ACGTcount: A:0.71, C:0.02, G:0.05, T:0.22
Consensus pattern (8 bp):
AATAAAAT
Found at i:86075375 original size:18 final size:16
Alignment explanation
Indices: 86075352--86075454 Score: 75
Period size: 18 Copynumber: 5.9 Consensus size: 16
86075342 TAATAACCAA
86075352 AATAAAATAATAAATACT
1 AATAAAATAATAAA-A-T
86075370 AATAAAATGAAATAAAAT
1 AATAAAAT--AATAAAAT
86075388 AATAAATACTAATAAAAT
1 AATAAA-A-TAATAAAAT
86075406 GAAATAAAATAAT-AAAT
1 --AATAAAATAATAAAAT
*
86075423 AATGAAAATTAAGAAAAGT
1 AAT-AAAA-TAATAAAA-T
*
86075442 AA-AAAAAAATAAA
1 AATAAAATAATAAA
86075455 GGTTGGGTTG
Statistics
Matches: 72, Mismatches: 3, Indels: 22
0.74 0.03 0.23
Matches are distributed among these distances:
15 3 0.04
16 9 0.12
17 11 0.15
18 30 0.42
19 6 0.08
20 13 0.18
ACGTcount: A:0.71, C:0.02, G:0.05, T:0.22
Consensus pattern (16 bp):
AATAAAATAATAAAAT
Found at i:86075384 original size:28 final size:28
Alignment explanation
Indices: 86075351--86075423 Score: 146
Period size: 28 Copynumber: 2.6 Consensus size: 28
86075341 TTAATAACCA
86075351 AAATAAAATAATAAATACTAATAAAATG
1 AAATAAAATAATAAATACTAATAAAATG
86075379 AAATAAAATAATAAATACTAATAAAATG
1 AAATAAAATAATAAATACTAATAAAATG
86075407 AAATAAAATAATAAATA
1 AAATAAAATAATAAATA
86075424 ATGAAAATTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.70, C:0.03, G:0.03, T:0.25
Consensus pattern (28 bp):
AAATAAAATAATAAATACTAATAAAATG
Found at i:86082774 original size:101 final size:100
Alignment explanation
Indices: 86082640--86082875 Score: 305
Period size: 101 Copynumber: 2.4 Consensus size: 100
86082630 TAAGACAGTT
* * * *
86082640 TTAGGTCATGTGTGTAGTACTAAGT-CAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGT
1 TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGT
* *
86082704 AATACTAAGTGCAGGCTACTATGCGTACTC-GATAG
66 AATACTAAGTGCAGGCAACTACGCGTAC-CAGATAG
* *
86082739 CTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTG
1 -TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTG
* * *
86082804 TATTACTAAGTGCAGGCAACTACGTGTACCAGATTG
65 TAATACTAAGTGCAGGCAACTACGCGTACCAGATAG
* * * *
86082840 TTAGGTCGCATGTGTAGTACTAACTGCAGGCTACTA
1 TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTA
86082876 TGCATACCAT
Statistics
Matches: 118, Mismatches: 16, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
100 54 0.46
101 64 0.54
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (100 bp):
TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGT
AATACTAAGTGCAGGCAACTACGCGTACCAGATAG
Found at i:86082884 original size:50 final size:50
Alignment explanation
Indices: 86082640--86082875 Score: 296
Period size: 50 Copynumber: 4.7 Consensus size: 50
86082630 TAAGACAGTT
**
86082640 TTAGGTCATGTGTGTAGTACTAAGT-CAGGCTACTACGTGTACCAGATTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * *
86082689 TTAGGTCGCATGTGTAATACTAAGTGCAGGCTACTATGCGTACTC-GATAG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGATTG
* * * * *
86082739 CTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG
1 -TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* *
86082790 TTAGGTCACATGTGTATTACTAAGTGCAGGCAACTACGTGTACCAGATTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* *
86082840 TTAGGTCGCATGTGTAGTACTAACTGCAGGCTACTA
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
86082876 TGCATACCAT
Statistics
Matches: 156, Mismatches: 27, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
49 21 0.13
50 95 0.61
51 40 0.26
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (50 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
Found at i:86082921 original size:151 final size:150
Alignment explanation
Indices: 86082640--86082921 Score: 379
Period size: 151 Copynumber: 1.9 Consensus size: 150
86082630 TAAGACAGTT
** *
86082640 TTAGGTCATGTGTGTAGTACTAAGTCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTA
1 TTAGGTCACATGTGTAGTACTAAGTCAGGCAACTACGTGTACCAGATTGTTAGGTCGCATGTGTA
* * ** * * *
86082705 ATACTAAGTGCAGGCTACTATGCGTACTCGATAGCTTCGATCACGTGTGTAGTACTAAGTGCAGG
66 ATACTAACTGCAGGCTACTATGCATACTCGATAGCTTCGATCACAAGGGTAGTAATAAGTACAGG
86082770 CTACTACGTGTATCAGATGG
131 CTACTACGTGTATCAGATGG
*
86082790 TTAGGTCACATGTGTATTACTAAGTGCAGGCAACTACGTGTACCAGATTGTTAGGTCGCATGTGT
1 TTAGGTCACATGTGTAGTACTAAGT-CAGGCAACTACGTGTACCAGATTGTTAGGTCGCATGTGT
* * * * *
86082855 AGTACTAACTGCAGGCTACTATGCATAC-C-ATAGAGCTTCGGTTACAAGGGTGGTAATATGTAC
65 AATACTAACTGCAGGCTACTATGCATACTCGAT--AGCTTCGATCACAAGGGTAGTAATAAGTAC
86082918 AGGC
128 AGGC
86082922 CAGCGGGTAT
Statistics
Matches: 113, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
149 2 0.02
150 23 0.20
151 88 0.78
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (150 bp):
TTAGGTCACATGTGTAGTACTAAGTCAGGCAACTACGTGTACCAGATTGTTAGGTCGCATGTGTA
ATACTAACTGCAGGCTACTATGCATACTCGATAGCTTCGATCACAAGGGTAGTAATAAGTACAGG
CTACTACGTGTATCAGATGG
Found at i:86093117 original size:40 final size:40
Alignment explanation
Indices: 86093019--86093321 Score: 396
Period size: 40 Copynumber: 7.6 Consensus size: 40
86093009 TCCTCGTTCA
* * * * *
86093019 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
86093058 AATGCCTTCGGGACATAACCCGGATTTAATAACTCACACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
86093098 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
86093138 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
86093178 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
86093218 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
86093258 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
86093298 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
86093322 CAGCATTCAA
Statistics
Matches: 240, Mismatches: 20, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 39 0.16
40 193 0.80
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:86095744 original size:70 final size:69
Alignment explanation
Indices: 86095624--86095764 Score: 255
Period size: 70 Copynumber: 2.0 Consensus size: 69
86095614 ACTCGGTTTT
* *
86095624 AAGTGAAAACGAGTAAAAGGGCTTAATCGGTAAAAATACCTAATAGTCATAAGTACATGTTAGAG
1 AAGTGAAAACGAGTAAAACGGCTTAATCGGTAAAAATACCTAATAATCATAAGTACATGTTAGAG
86095689 TGAG
66 TGAG
86095693 AANGTGAAAACGAGTAAAACGGCTTAATCGGTAAAAATACCTAATAATCATAAGTACATGTTAGA
1 AA-GTGAAAACGAGTAAAACGGCTTAATCGGTAAAAATACCTAATAATCATAAGTACATGTTAGA
86095758 GTGAG
65 GTGAG
86095763 AA
1 AA
86095765 TTTGATGTTG
Statistics
Matches: 69, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
69 2 0.03
70 67 0.97
ACGTcount: A:0.45, C:0.11, G:0.21, T:0.23
Consensus pattern (69 bp):
AAGTGAAAACGAGTAAAACGGCTTAATCGGTAAAAATACCTAATAATCATAAGTACATGTTAGAG
TGAG
Found at i:86104659 original size:13 final size:13
Alignment explanation
Indices: 86104641--86104665 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86104631 GGTTGTTTAT
86104641 TAAACTAATTAAC
1 TAAACTAATTAAC
86104654 TAAACTAATTAA
1 TAAACTAATTAA
86104666 ATAATTAAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.32
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:86112284 original size:43 final size:42
Alignment explanation
Indices: 86112223--86112332 Score: 107
Period size: 42 Copynumber: 2.6 Consensus size: 42
86112213 CAATGCCAAC
* *
86112223 GTCCCAGACGTGGTCTTACATGTAATCAAACATCGATGCC-ACT
1 GTCCCAGACATGGCCTTACATGTAATCAAACA-CGATGCCGA-T
* * * *
86112266 GTCCCAGACA-GAGCCTTACACGAAATCAGATACGATGCCGAT
1 GTCCCAGACATG-GCCTTACATGTAATCAAACACGATGCCGAT
* *
86112308 GTTCCAGACATGGTCTTACATGTAA
1 GTCCCAGACATGGCCTTACATGTAA
86112333 AACATAATTT
Statistics
Matches: 54, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
42 28 0.52
43 26 0.48
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (42 bp):
GTCCCAGACATGGCCTTACATGTAATCAAACACGATGCCGAT
Found at i:86112326 original size:42 final size:43
Alignment explanation
Indices: 86112215--86112327 Score: 108
Period size: 43 Copynumber: 2.7 Consensus size: 43
86112205 AGCATATACA
* * *
86112215 ATGCCAAC-GTCCCAGACGTGGTCTTACATGTAATCAAACATCG
1 ATGCC-ACTGTCCCAGACATGGTCTTACACGAAATCAAACATCG
* * *
86112258 ATGCCACTGTCCCAGACA-GAGCCTTACACGAAATCAGATA-CG
1 ATGCCACTGTCCCAGACATG-GTCTTACACGAAATCAAACATCG
*
86112300 ATGCCGA-TGTTCCAGACATGGTCTTACA
1 ATGCC-ACTGTCCCAGACATGGTCTTACA
86112328 TGTAAAACAT
Statistics
Matches: 58, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
42 27 0.47
43 31 0.53
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACATGGTCTTACACGAAATCAAACATCG
Found at i:86112700 original size:24 final size:24
Alignment explanation
Indices: 86112672--86112721 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
86112662 AGATTCAAAT
86112672 TTAACTTATTCAATCACACATTCA
1 TTAACTTATTCAATCACACATTCA
86112696 TTAACTTATTCAATCACACATTCA
1 TTAACTTATTCAATCACACATTCA
86112720 TT
1 TT
86112722 CAAAACAATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.36, C:0.24, G:0.00, T:0.40
Consensus pattern (24 bp):
TTAACTTATTCAATCACACATTCA
Found at i:86115624 original size:23 final size:23
Alignment explanation
Indices: 86115598--86115653 Score: 58
Period size: 24 Copynumber: 2.4 Consensus size: 23
86115588 ACAAGCTTTG
*
86115598 ACGAGCTGAATCAATAAGCTCAT
1 ACGAGCTGAAACAATAAGCTCAT
* * *
86115621 ACGATCTGAAAACAGTAAGCTCTT
1 ACGAGCTG-AAACAATAAGCTCAT
*
86115645 ACAAGCTGA
1 ACGAGCTGA
86115654 TATATCGGTA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
23 8 0.31
24 18 0.69
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.21
Consensus pattern (23 bp):
ACGAGCTGAAACAATAAGCTCAT
Found at i:86126264 original size:65 final size:65
Alignment explanation
Indices: 86126160--86126290 Score: 226
Period size: 65 Copynumber: 2.0 Consensus size: 65
86126150 CCCCTAGGGT
86126160 TAAGGTTGACCTGAATGCATGTTTGACTATTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTATTACTATTTACTGCATGCCATGTTATTATTATCTGA
* * * *
86126225 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCTATTTTATTATTATTTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTATTACTATTTACTGCATGCCATGTTATTATTATCTGA
86126290 T
1 T
86126291 GCATGGGACT
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
65 62 1.00
ACGTcount: A:0.25, C:0.14, G:0.17, T:0.44
Consensus pattern (65 bp):
TAAGGTTGACCTGAATGCATGTTTGACTATTACTATTTACTGCATGCCATGTTATTATTATCTGA
Found at i:86130382 original size:65 final size:65
Alignment explanation
Indices: 86130278--86130408 Score: 217
Period size: 65 Copynumber: 2.0 Consensus size: 65
86130268 CCCCTAGGGT
*
86130278 TAAGGTTGACCTAAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTAAATGCATGTTTGACTGTTACTATTTACTACATGCCATGTTATTATTATCTGA
* * * *
86130343 TAAGGTTGACTTGAATGCATGTTTGATTGTTACTATTTACTACATGCTATGTTATTATTATCTGA
1 TAAGGTTGACCTAAATGCATGTTTGACTGTTACTATTTACTACATGCCATGTTATTATTATCTGA
86130408 T
1 T
86130409 GCATGGGACT
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
65 61 1.00
ACGTcount: A:0.26, C:0.13, G:0.17, T:0.44
Consensus pattern (65 bp):
TAAGGTTGACCTAAATGCATGTTTGACTGTTACTATTTACTACATGCCATGTTATTATTATCTGA
Found at i:86144625 original size:20 final size:20
Alignment explanation
Indices: 86144600--86144637 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
86144590 CATCAACAGT
86144600 ATATAAAATATGAAACATCA
1 ATATAAAATATGAAACATCA
86144620 ATATAAAATATGAAACAT
1 ATATAAAATATGAAACAT
86144638 TAACACATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.61, C:0.08, G:0.05, T:0.26
Consensus pattern (20 bp):
ATATAAAATATGAAACATCA
Found at i:86149528 original size:38 final size:38
Alignment explanation
Indices: 86149467--86149567 Score: 139
Period size: 38 Copynumber: 2.6 Consensus size: 38
86149457 ATTTGATGTG
*
86149467 TATCCGGGCTTAAAGACCCGTAGGCTTCGTACTGGTAAAA
1 TATCCGGG-TTAAA-TCCCGTAGGCTTCGTACTGGTAAAA
* **
86149507 TATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGTAGGCTTCGTACTGGTAAAA
*
86149545 TATCCGGGATAAATCCCGTAGGC
1 TATCCGGGTTAAATCCCGTAGGC
86149568 CTAGTGCTGG
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
38 43 0.77
39 5 0.09
40 8 0.14
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.28
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGTAGGCTTCGTACTGGTAAAA
Found at i:86149575 original size:38 final size:38
Alignment explanation
Indices: 86149483--86149585 Score: 152
Period size: 38 Copynumber: 2.7 Consensus size: 38
86149473 GGCTTAAAGA
* ** *
86149483 CCCGTAGGCTTCGTACTGGTAAAATATCCGGGTTAAAT
1 CCCGTAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
86149521 CCCGTAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
1 CCCGTAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
* *
86149559 CCCGTAGGCCTAGTGCTGGTATTATAT
1 CCCGTAGGCTTCGTGCTGGTATTATAT
86149586 TTGGGCCTTC
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 59 1.00
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.31
Consensus pattern (38 bp):
CCCGTAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
Found at i:86149836 original size:43 final size:43
Alignment explanation
Indices: 86149583--86149823 Score: 401
Period size: 43 Copynumber: 5.6 Consensus size: 43
86149573 GCTGGTATTA
* * *
86149583 TATTTGGGCCTTCGTGCCTAGCAAGCTTCGTGCTGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
86149626 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGTCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
86149669 TATTCGGGGCTTCGTGCCTAGCAGGCGTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
86149712 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGTCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
86149755 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
86149798 TATTCAGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
86149824 GTAATACCGG
Statistics
Matches: 184, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 184 1.00
ACGTcount: A:0.11, C:0.24, G:0.34, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:86152246 original size:21 final size:21
Alignment explanation
Indices: 86152213--86152266 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
86152203 AGAATAGGGC
* *
86152213 ACACGCCCATGTAGAAGGCCA
1 ACACGCCCGTGTACAAGGCCA
* *
86152234 ACACGCCTGTGTACAAGGGCA
1 ACACGCCCGTGTACAAGGCCA
*
86152255 ACGCGCCCGTGT
1 ACACGCCCGTGT
86152267 GGTCATTAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.26, C:0.33, G:0.28, T:0.13
Consensus pattern (21 bp):
ACACGCCCGTGTACAAGGCCA
Found at i:86153518 original size:46 final size:47
Alignment explanation
Indices: 86153468--86153593 Score: 125
Period size: 47 Copynumber: 2.7 Consensus size: 47
86153458 GTCTCGAGGC
*
86153468 CGATGCATGTCCCAGAGATGTCTTACACTAGCACTCATCCTAA-T-AT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCACTC-TCCTAAGTGAT
* * * * *
86153514 CGATGCCATCTCCCAAACATAGTCTTACA-TTG-GCTCTCCTAAGGTGGT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCTCCTAA-GTGAT
*
86153562 CAATGCATGTCCCAGACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
86153594 TCACATAAGT
Statistics
Matches: 63, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
45 6 0.10
46 16 0.25
47 28 0.44
48 13 0.21
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (47 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCACTCTCCTAAGTGAT
Found at i:86159750 original size:30 final size:30
Alignment explanation
Indices: 86159689--86159750 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
86159679 AATTAGTAAA
*
86159689 AAAAGAATATATACATAATAAAAAATATAT
1 AAAAGAATATATACAGAATAAAAAATATAT
86159719 AAAAGAATATATA-AGAA-AAATAAATATTAT
1 AAAAGAATATATACAGAATAAA-AAATA-TAT
86159749 AA
1 AA
86159751 GGAATGTTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 3 0.10
29 8 0.28
30 18 0.62
ACGTcount: A:0.68, C:0.02, G:0.05, T:0.26
Consensus pattern (30 bp):
AAAAGAATATATACAGAATAAAAAATATAT
Found at i:86169031 original size:15 final size:15
Alignment explanation
Indices: 86169000--86169032 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
86168990 ATTTTTTGTG
86169000 TTTATTCTGTGAGAA
1 TTTATTCTGTGAGAA
86169015 TTTATATCTGTGA-AA
1 TTTAT-TCTGTGAGAA
86169030 TTT
1 TTT
86169033 TCATGATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.27, C:0.06, G:0.15, T:0.52
Consensus pattern (15 bp):
TTTATTCTGTGAGAA
Found at i:86171279 original size:25 final size:26
Alignment explanation
Indices: 86171227--86171322 Score: 135
Period size: 26 Copynumber: 3.8 Consensus size: 26
86171217 GAGGAAGTGC
* *
86171227 AAAAGGGC-TATGCCCTAG-TTACCG
1 AAAAGGGCTTTTGCCCCAGTTTACCG
86171251 AAAAGGGC-TTTGCCCCAGTTTACCG
1 AAAAGGGCTTTTGCCCCAGTTTACCG
* *
86171276 AAAAGGGCTTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTTGCCCCAGTTTACCG
86171302 AAAAGGGCTTTTGCCCCAGTT
1 AAAAGGGCTTTTGCCCCAGTT
86171323 ATTAAAAGAG
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
24 16 0.24
25 14 0.21
26 36 0.55
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTTTGCCCCAGTTTACCG
Found at i:86171335 original size:25 final size:25
Alignment explanation
Indices: 86171226--86171335 Score: 111
Period size: 26 Copynumber: 4.4 Consensus size: 25
86171216 GGAGGAAGTG
* * *
86171226 CAAAAGGGC-TATGCCCTAG-TTAC
1 CAAAAGGGCTTTTGCCCCAGTTTAT
*
86171249 CGAAAAGGGC-TTTGCCCCAGTTTAC
1 C-AAAAGGGCTTTTGCCCCAGTTTAT
86171274 CGAAAAGGGCTTTTGCCCCAGTTTAT
1 C-AAAAGGGCTTTTGCCCCAGTTTAT
86171300 CAAAAAGGGCTTTTGCCCCAG-TTAT
1 C-AAAAGGGCTTTTGCCCCAGTTTAT
*
86171325 TAAAAGAGGCT
1 CAAAAG-GGCT
86171336 AGGCCTCCAG
Statistics
Matches: 78, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
23 1 0.01
24 21 0.27
25 22 0.28
26 34 0.44
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (25 bp):
CAAAAGGGCTTTTGCCCCAGTTTAT
Found at i:86171580 original size:31 final size:31
Alignment explanation
Indices: 86171542--86171655 Score: 185
Period size: 31 Copynumber: 3.7 Consensus size: 31
86171532 CTGTTACAGT
*
86171542 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCAGCCCAGTGATATGAATAATGA
* *
86171573 AAAGGCTTCGGCCCAATGATATGAATAATGA
1 AAAGGCTTCAGCCCAGTGATATGAATAATGA
*
86171604 AAAGGCTTCAGCCCAGTGATATGAATAATGT
1 AAAGGCTTCAGCCCAGTGATATGAATAATGA
86171635 AAAGGCTTCAGCCCAGT-ATAT
1 AAAGGCTTCAGCCCAGTGATAT
86171656 ACTGAGATTG
Statistics
Matches: 79, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 4 0.05
31 75 0.95
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTGATATGAATAATGA
Found at i:86180465 original size:81 final size:81
Alignment explanation
Indices: 86179529--86180436 Score: 1735
Period size: 81 Copynumber: 11.2 Consensus size: 81
86179519 GGATAAGTTG
* *
86179529 TAAAATTACCAAAATACCCTTAGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAAGTACTA
1 TAAAATTACCAAAATACACTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAAGTACTA
86179594 AAATACCCTTGGTTTA
66 AAATACCCTTGGTTTA
86179610 TAAAATTACCAAAATACACTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAAGTACTA
1 TAAAATTACCAAAATACACTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAAGTACTA
86179675 AAATACCCTTGGTTTA
66 AAATACCCTTGGTTTA
86179691 TAAAATTACCAAAATACACTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAAGTACTA
1 TAAAATTACCAAAATACACTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAAGTACTA
86179756 AAATACCCTTGGTTTA
66 AAATACCCTTGGTTTA
86179772 TAAAATTACCAAAATACACTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAAGTACTA
1 TAAAATTACCAAAATACACTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAAGTACTA
86179837 AAATACCCTTGGTTTA
66 AAATACCCTTGGTTTA
86179853 TAAAATTACCAAAATACACTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAAGTACTA
1 TAAAATTACCAAAATACACTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAAGTACTA
86179918 AAATACCCTTGGTTTA
66 AAATACCCTTGGTTTA
86179934 TAAAATTACCAAAATACACTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAAGTACTA
1 TAAAATTACCAAAATACACTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAAGTACTA
86179999 AAATACCCTTGGTTTA
66 AAATACCCTTGGTTTA
86180015 TAAAATTACCAAAATACACTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAAGTACTA
1 TAAAATTACCAAAATACACTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAAGTACTA
86180080 AAATACCCTTGGTTTA
66 AAATACCCTTGGTTTA
86180096 TAAAATTACCAAAATACACTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAAGTACTA
1 TAAAATTACCAAAATACACTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAAGTACTA
86180161 AAATACCCTTGGTTTA
66 AAATACCCTTGGTTTA
86180177 TAAAATTACCAAAATACACTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAAGTACTA
1 TAAAATTACCAAAATACACTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAAGTACTA
86180242 AAATACCCTTGGTTTA
66 AAATACCCTTGGTTTA
86180258 TAAAATTACCAAAATACACTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAAGTACTA
1 TAAAATTACCAAAATACACTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAAGTACTA
86180323 AAATACCCTTGGTTTA
66 AAATACCCTTGGTTTA
* *
86180339 TAAAATTACCAAAATACACTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCA
1 TAAAATTACCAAAATACACTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAAGTACTA
* * *
86180404 AAATACCCCTGATTTG
66 AAATACCCTTGGTTTA
* *
86180420 TGAAATTACTAAAATAC
1 TAAAATTACCAAAATAC
86180437 CCTCGACCTG
Statistics
Matches: 818, Mismatches: 9, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 818 1.00
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.32
Consensus pattern (81 bp):
TAAAATTACCAAAATACACTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAAGTACTA
AAATACCCTTGGTTTA
Found at i:86180491 original size:27 final size:27
Alignment explanation
Indices: 86179526--86180492 Score: 430
Period size: 27 Copynumber: 35.8 Consensus size: 27
86179516 AGTGGATAAG
* *
86179526 TTGTAAAATTACCAAAATACCCT-TAGT
1 TTGTAAAATTACCAAAATACCCTCGA-C
* * *
86179553 TTATAAAATTACCAAAATACCC-CTAGT
1 TTGTAAAATTACCAAAATACCCTCGA-C
* * * **
86179580 TTGTAAAAGTACTAAAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCTCGAC
* * * **
86179607 TTATAAAATTACCAAAATACACTTGGT
1 TTGTAAAATTACCAAAATACCCTCGAC
* * *
86179634 TTATAAAATTACCAAAATACCC-CTAGT
1 TTGTAAAATTACCAAAATACCCTCGA-C
* * * **
86179661 TTGTAAAAGTACTAAAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCTCGAC
* * * **
86179688 TTATAAAATTACCAAAATACACTTGGT
1 TTGTAAAATTACCAAAATACCCTCGAC
* * *
86179715 TTATAAAATTACCAAAATACCC-CTAGT
1 TTGTAAAATTACCAAAATACCCTCGA-C
* * * **
86179742 TTGTAAAAGTACTAAAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCTCGAC
* * * **
86179769 TTATAAAATTACCAAAATACACTTGGT
1 TTGTAAAATTACCAAAATACCCTCGAC
* * *
86179796 TTATAAAATTACCAAAATACCC-CTAGT
1 TTGTAAAATTACCAAAATACCCTCGA-C
* * * **
86179823 TTGTAAAAGTACTAAAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCTCGAC
* * * **
86179850 TTATAAAATTACCAAAATACACTTGGT
1 TTGTAAAATTACCAAAATACCCTCGAC
* * *
86179877 TTATAAAATTACCAAAATACCC-CTAGT
1 TTGTAAAATTACCAAAATACCCTCGA-C
* * * **
86179904 TTGTAAAAGTACTAAAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCTCGAC
* * * **
86179931 TTATAAAATTACCAAAATACACTTGGT
1 TTGTAAAATTACCAAAATACCCTCGAC
* * *
86179958 TTATAAAATTACCAAAATACCC-CTAGT
1 TTGTAAAATTACCAAAATACCCTCGA-C
* * * **
86179985 TTGTAAAAGTACTAAAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCTCGAC
* * * **
86180012 TTATAAAATTACCAAAATACACTTGGT
1 TTGTAAAATTACCAAAATACCCTCGAC
* * *
86180039 TTATAAAATTACCAAAATACCC-CTAGT
1 TTGTAAAATTACCAAAATACCCTCGA-C
* * * **
86180066 TTGTAAAAGTACTAAAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCTCGAC
* * * **
86180093 TTATAAAATTACCAAAATACACTTGGT
1 TTGTAAAATTACCAAAATACCCTCGAC
* * *
86180120 TTATAAAATTACCAAAATACCC-CTAGT
1 TTGTAAAATTACCAAAATACCCTCGA-C
* * * **
86180147 TTGTAAAAGTACTAAAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCTCGAC
* * * **
86180174 TTATAAAATTACCAAAATACACTTGGT
1 TTGTAAAATTACCAAAATACCCTCGAC
* * *
86180201 TTATAAAATTACCAAAATACCC-CTAGT
1 TTGTAAAATTACCAAAATACCCTCGA-C
* * * **
86180228 TTGTAAAAGTACTAAAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCTCGAC
* * * **
86180255 TTATAAAATTACCAAAATACACTTGGT
1 TTGTAAAATTACCAAAATACCCTCGAC
* * *
86180282 TTATAAAATTACCAAAATACCC-CTAGT
1 TTGTAAAATTACCAAAATACCCTCGA-C
* * * **
86180309 TTGTAAAAGTACTAAAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCTCGAC
* * * **
86180336 TTATAAAATTACCAAAATACACTTGGT
1 TTGTAAAATTACCAAAATACCCTCGAC
* * *
86180363 TTATAAAATTACCAAAATACCC-CTAGT
1 TTGTAAAATTACCAAAATACCCTCGA-C
*
86180390 TTGTAAAATTACCAAAATACCC-CTGAT
1 TTGTAAAATTACCAAAATACCCTC-GAC
* *
86180417 TTGTGAAATTACTAAAATACCCTCGAC
1 TTGTAAAATTACCAAAATACCCTCGAC
* ***
86180444 CTGTAAAATTATTGAAATACCCTCGAC
1 TTGTAAAATTACCAAAATACCCTCGAC
* *
86180471 TTGTAAAATCACCAAAGTACCC
1 TTGTAAAATTACCAAAATACCC
86180493 CCGATTTAAA
Statistics
Matches: 761, Mismatches: 156, Indels: 46
0.79 0.16 0.05
Matches are distributed among these distances:
27 759 1.00
28 2 0.00
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.32
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCTCGAC
Found at i:86180567 original size:27 final size:27
Alignment explanation
Indices: 86180537--86180600 Score: 119
Period size: 27 Copynumber: 2.4 Consensus size: 27
86180527 ACAAAATTAT
*
86180537 CGAAATACCGTTGTAGGGTAGAAATAC
1 CGAAATACCCTTGTAGGGTAGAAATAC
86180564 CGAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCTTGTAGGGTAGAAATAC
86180591 CGAAATACCC
1 CGAAATACCC
86180601 CTGGAAGGTA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.20
Consensus pattern (27 bp):
CGAAATACCCTTGTAGGGTAGAAATAC
Found at i:86180610 original size:27 final size:27
Alignment explanation
Indices: 86180553--86180611 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
86180543 ACCGTTGTAG
* * *
86180553 GGTAGAAATACCGAAATACCCTTGTAG
1 GGTAGAAATACCGAAATACCCCTGGAA
86180580 GGTAGAAATACCGAAATACCCCTGGAA
1 GGTAGAAATACCGAAATACCCCTGGAA
86180607 GGTAG
1 GGTAG
86180612 GACTATCGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.37, C:0.19, G:0.25, T:0.19
Consensus pattern (27 bp):
GGTAGAAATACCGAAATACCCCTGGAA
Found at i:86181313 original size:27 final size:26
Alignment explanation
Indices: 86181269--86181320 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
86181259 CTCGCTGCAA
*
86181269 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
86181296 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
86181321 GCAACCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:86186990 original size:27 final size:27
Alignment explanation
Indices: 86186960--86187169 Score: 285
Period size: 27 Copynumber: 7.8 Consensus size: 27
86186950 GGATAAGTTG
*
86186960 TAAAATTACCAAAATACCCTTAGTTTA
1 TAAAATTACCAAAATACCCCTAGTTTA
* *
86186987 TAAAATTACCAAAATACCCCTGGTTTG
1 TAAAATTACCAAAATACCCCTAGTTTA
* * ** *
86187014 TAAAAGTACTAAAATACCTTTTGTTTA
1 TAAAATTACCAAAATACCCCTAGTTTA
** *
86187041 TAAAATTACCAAAATACCATTGGTTTA
1 TAAAATTACCAAAATACCCCTAGTTTA
*
86187068 TAAAATTACCAAAATACCCCTAGTTTG
1 TAAAATTACCAAAATACCCCTAGTTTA
* *
86187095 TAAAATTACCAAAATACCCCTGGTTTG
1 TAAAATTACCAAAATACCCCTAGTTTA
*
86187122 TAAAATTACAAAAATACCCCTAGTTTA
1 TAAAATTACCAAAATACCCCTAGTTTA
86187149 TAAAATTACCAAAATACCCCT
1 TAAAATTACCAAAATACCCCT
86187170 GATTTGTGAA
Statistics
Matches: 161, Mismatches: 22, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 161 1.00
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCCTAGTTTA
Found at i:86187040 original size:54 final size:54
Alignment explanation
Indices: 86186957--86187194 Score: 341
Period size: 54 Copynumber: 4.4 Consensus size: 54
86186947 AGTGGATAAG
*
86186957 TTGTAAAATTACCAAAATACCCTTAGTTTATAAAATTACCAAAATACCCCTGGT
1 TTGTAAAATTACCAAAATACCCCTAGTTTATAAAATTACCAAAATACCCCTGGT
* * ** * **
86187011 TTGTAAAAGTACTAAAATACCTTTTGTTTATAAAATTACCAAAATACCATTGGT
1 TTGTAAAATTACCAAAATACCCCTAGTTTATAAAATTACCAAAATACCCCTGGT
* *
86187065 TTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGT
1 TTGTAAAATTACCAAAATACCCCTAGTTTATAAAATTACCAAAATACCCCTGGT
* *
86187119 TTGTAAAATTACAAAAATACCCCTAGTTTATAAAATTACCAAAATACCCCTGAT
1 TTGTAAAATTACCAAAATACCCCTAGTTTATAAAATTACCAAAATACCCCTGGT
* **
86187173 TTGTGAAATTACTGAAATACCC
1 TTGTAAAATTACCAAAATACCC
86187195 TCGACCTGTA
Statistics
Matches: 162, Mismatches: 22, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 162 1.00
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (54 bp):
TTGTAAAATTACCAAAATACCCCTAGTTTATAAAATTACCAAAATACCCCTGGT
Found at i:86187095 original size:81 final size:80
Alignment explanation
Indices: 86186960--86187194 Score: 335
Period size: 81 Copynumber: 2.9 Consensus size: 80
86186950 GGATAAGTTG
*
86186960 TAAAATTACCAAAATACCCTTAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAAGTACTA
1 TAAAATTACCAAAATACCCTTAGTTTATAAAATTACCAAAATACCCCT-GTTTGTAAAATTACTA
** *
86187025 AAATACCTTTTGTTTA
65 AAATACCCCTGGTTTA
* * *
86187041 TAAAATTACCAAAATACCATTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCA
1 TAAAATTACCAAAATACCCTTAGTTTATAAAATTACCAAAATACCCCT-GTTTGTAAAATTACTA
*
86187106 AAATACCCCTGGTTTG
65 AAATACCCCTGGTTTA
* * * *
86187122 TAAAATTACAAAAATACCCCTAGTTTATAAAATTACCAAAATACCCCTGATTTGTGAAATTACTG
1 TAAAATTACCAAAATACCCTTAGTTTATAAAATTACCAAAATACCCCTG-TTTGTAAAATTACTA
86187187 AAATACCC
65 AAATACCC
86187195 TCGACCTGTA
Statistics
Matches: 137, Mismatches: 16, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
80 1 0.01
81 136 0.99
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (80 bp):
TAAAATTACCAAAATACCCTTAGTTTATAAAATTACCAAAATACCCCTGTTTGTAAAATTACTAA
AATACCCCTGGTTTA
Found at i:86187181 original size:27 final size:27
Alignment explanation
Indices: 86186957--86187255 Score: 268
Period size: 27 Copynumber: 11.1 Consensus size: 27
86186947 AGTGGATAAG
*
86186957 TTGTAAAATTACCAAAATA-CCCTTAGT
1 TTGTAAAATTACCAAAATACCCCTGA-T
* *
86186984 TTATAAAATTACCAAAATACCCCTGGT
1 TTGTAAAATTACCAAAATACCCCTGAT
* * **
86187011 TTGTAAAAGTACTAAAATACCTTTTG-T
1 TTGTAAAATTACCAAAATACC-CCTGAT
* ** *
86187038 TTATAAAATTACCAAAATACCATTGGT
1 TTGTAAAATTACCAAAATACCCCTGAT
*
86187065 TTATAAAATTACCAAAATACCCCT-AGT
1 TTGTAAAATTACCAAAATACCCCTGA-T
*
86187092 TTGTAAAATTACCAAAATACCCCTGGT
1 TTGTAAAATTACCAAAATACCCCTGAT
*
86187119 TTGTAAAATTACAAAAATACCCCT-AGT
1 TTGTAAAATTACCAAAATACCCCTGA-T
*
86187146 TTATAAAATTACCAAAATACCCCTGAT
1 TTGTAAAATTACCAAAATACCCCTGAT
* ** *
86187173 TTGTGAAATTACTGAAATA-CCCTCGAC
1 TTGTAAAATTACCAAAATACCCCT-GAT
* *** *
86187200 CTGTAAAATTATTGAAATA-CCCTCGAC
1 TTGTAAAATTACCAAAATACCCCT-GAT
* *
86187227 TTGTAAAATTACCAAAGTACCCCCGAT
1 TTGTAAAATTACCAAAATACCCCTGAT
86187254 TT
1 TT
86187256 ACAGAATTAT
Statistics
Matches: 227, Mismatches: 36, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
26 7 0.03
27 210 0.93
28 10 0.04
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTGAT
Found at i:86187205 original size:81 final size:80
Alignment explanation
Indices: 86186957--86187255 Score: 323
Period size: 81 Copynumber: 3.7 Consensus size: 80
86186947 AGTGGATAAG
* * *
86186957 TTGTAAAATTACCAAAATACCCTTAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAAGTA
1 TTGTAAAATTACCAAAATACCCCTAGTTTATAAAATTACCAAAATACCCCTGATTTGTAAAATTA
* *
86187022 CTAAAATACCTTTTGT
66 CTAAAATACC-CTCGT
* ** *
86187038 TTATAAAATTACCAAAATACCATTGGTTTATAAAATTACCAAAATACCCCT-AGTTTGTAAAATT
1 TTGTAAAATTACCAAAATACCCCTAGTTTATAAAATTACCAAAATACCCCTGA-TTTGTAAAATT
* *
86187102 ACCAAAATACCCCTGGT
65 ACTAAAATA-CCCTCGT
* *
86187119 TTGTAAAATTACAAAAATACCCCTAGTTTATAAAATTACCAAAATACCCCTGATTTGTGAAATTA
1 TTGTAAAATTACCAAAATACCCCTAGTTTATAAAATTACCAAAATACCCCTGATTTGTAAAATTA
* *
86187184 CTGAAATACCCTCGAC
66 CTAAAATACCCTCG-T
* *** * * * * *
86187200 CTGTAAAATTATTGAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCCCCGATTT
1 TTGTAAAATTACCAAAATACCCCTAG-TTTATAAAATTACCAAAATACCCCTGATTT
86187256 ACAGAATTAT
Statistics
Matches: 186, Mismatches: 27, Indels: 10
0.83 0.12 0.04
Matches are distributed among these distances:
80 10 0.05
81 173 0.93
82 3 0.02
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (80 bp):
TTGTAAAATTACCAAAATACCCCTAGTTTATAAAATTACCAAAATACCCCTGATTTGTAAAATTA
CTAAAATACCCTCGT
Found at i:86187301 original size:27 final size:27
Alignment explanation
Indices: 86186960--86187303 Score: 225
Period size: 27 Copynumber: 12.7 Consensus size: 27
86186950 GGATAAGTTG
*
86186960 TAAAATTACCAAAATACCCT-TAGTTTA
1 TAAAATTACCAAAATACCCTCGA-TTTA
* *
86186987 TAAAATTACCAAAATACCC-CTGGTTTG
1 TAAAATTACCAAAATACCCTC-GATTTA
* * * *
86187014 TAAAAGTACTAAAATACCTTTTG-TTTA
1 TAAAATTACCAAAATACC-CTCGATTTA
* * *
86187041 TAAAATTACCAAAATACCATTGGTTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* *
86187068 TAAAATTACCAAAATACCC-CTAGTTTG
1 TAAAATTACCAAAATACCCTCGA-TTTA
* *
86187095 TAAAATTACCAAAATACCC-CTGGTTTG
1 TAAAATTACCAAAATACCCTC-GATTTA
* *
86187122 TAAAATTACAAAAATACCC-CTAGTTTA
1 TAAAATTACCAAAATACCCTCGA-TTTA
*
86187149 TAAAATTACCAAAATACCC-CTGATTTG
1 TAAAATTACCAAAATACCCTC-GATTTA
* ** ** *
86187176 TGAAATTACTGAAATACCCTCGACCTG
1 TAAAATTACCAAAATACCCTCGATTTA
*** * *
86187203 TAAAATTATTGAAATACCCTCGACTTG
1 TAAAATTACCAAAATACCCTCGATTTA
* *
86187230 TAAAATTACCAAAGTACCCCCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * * ****
86187257 CAGAATTATCGTTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* *
86187284 CAAAATTACCGAAATACCCT
1 TAAAATTACCAAAATACCCT
86187304 TGTAGGGTAG
Statistics
Matches: 254, Mismatches: 53, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
26 3 0.01
27 248 0.98
28 3 0.01
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCTCGATTTA
Found at i:86187320 original size:27 final size:27
Alignment explanation
Indices: 86187285--86187355 Score: 115
Period size: 27 Copynumber: 2.6 Consensus size: 27
86187275 CTCGATTTAC
*
86187285 AAAATTACCGAAATACCCTTGTAGGGT
1 AAAAATACCGAAATACCCTTGTAGGGT
*
86187312 AGAAATACCGAAATACCCTTGTAGGGT
1 AAAAATACCGAAATACCCTTGTAGGGT
*
86187339 AAAAATACTGAAATACC
1 AAAAATACCGAAATACC
86187356 GAAATACCCC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.42, C:0.18, G:0.17, T:0.23
Consensus pattern (27 bp):
AAAAATACCGAAATACCCTTGTAGGGT
Found at i:86189621 original size:25 final size:26
Alignment explanation
Indices: 86189569--86189664 Score: 135
Period size: 26 Copynumber: 3.8 Consensus size: 26
86189559 GAGGAAGTGC
*
86189569 AAAAGGGC-TATGCCCCAG-TTACCA
1 AAAAGGGCTTTTGCCCCAGTTTACCA
*
86189593 AAAAGGGC-TTTGCCCCAGTTTACCG
1 AAAAGGGCTTTTGCCCCAGTTTACCA
*
86189618 AAAAGGGCTTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTTGCCCCAGTTTACCA
*
86189644 AAAAAGGCTTTTGCCCCAGTT
1 AAAAGGGCTTTTGCCCCAGTT
86189665 ATTAAAAGAG
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
24 17 0.26
25 13 0.20
26 35 0.54
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
AAAAGGGCTTTTGCCCCAGTTTACCA
Found at i:86189676 original size:25 final size:26
Alignment explanation
Indices: 86189579--86189677 Score: 109
Period size: 26 Copynumber: 3.9 Consensus size: 26
86189569 AAAAGGGCTA
86189579 TGCCCCAG-TTACCAAAA-AGGGC-TT
1 TGCCCCAGTTTACCAAAAGA-GGCTTT
86189603 TGCCCCAGTTTACCGAAAAG-GGCTTT
1 TGCCCCAGTTTACC-AAAAGAGGCTTT
* *
86189629 TGCCCCAGTTTATCAAAAAAGGCTTT
1 TGCCCCAGTTTACCAAAAGAGGCTTT
**
86189655 TGCCCCAG-TTATTAAAAGAGGCT
1 TGCCCCAGTTTACCAAAAGAGGCT
86189678 AGGCCTCCAG
Statistics
Matches: 66, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
24 8 0.12
25 25 0.38
26 33 0.50
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.26
Consensus pattern (26 bp):
TGCCCCAGTTTACCAAAAGAGGCTTT
Found at i:86189922 original size:31 final size:31
Alignment explanation
Indices: 86189884--86189997 Score: 194
Period size: 31 Copynumber: 3.7 Consensus size: 31
86189874 CTGTTACAGT
86189884 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
86189915 AAAGGCTTCGGCCCAATGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
86189946 AAAGGCTTCAGCCCAGTGATATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
86189977 AAAGGCTTCGGCCCAGT-ATAT
1 AAAGGCTTCGGCCCAGTGATAT
86189998 ACTGAGATTG
Statistics
Matches: 78, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
30 4 0.05
31 74 0.95
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:86193088 original size:50 final size:50
Alignment explanation
Indices: 86193015--86193112 Score: 178
Period size: 50 Copynumber: 2.0 Consensus size: 50
86193005 GTTGATAATG
* *
86193015 TATATTTTATTTCAAATGGTCTATAATTTATGCATGTGTAGGACTTTTTA
1 TATATTTTATTTCAAATGGTCTATAATTTATACATGTGCAGGACTTTTTA
86193065 TATATTTTATTTCAAATGGTCTATAATTTATACATGTGCAGGACTTTT
1 TATATTTTATTTCAAATGGTCTATAATTTATACATGTGCAGGACTTTT
86193113 ATAAAAGTAG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.29, C:0.09, G:0.13, T:0.49
Consensus pattern (50 bp):
TATATTTTATTTCAAATGGTCTATAATTTATACATGTGCAGGACTTTTTA
Found at i:86201695 original size:21 final size:21
Alignment explanation
Indices: 86201637--86201695 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 21
86201627 GCTCTGGAAC
* *
86201637 AGGGC-ACATGCCCATGTAGT
1 AGGGCAACATGCCCGTGTAGA
*
86201657 AGGGCAACATGCCTGTGTAGA
1 AGGGCAACATGCCCGTGTAGA
*
86201678 AGGGCAACACGCCCGTGT
1 AGGGCAACATGCCCGTGT
86201696 GGCCATTAAC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
20 5 0.15
21 28 0.85
ACGTcount: A:0.25, C:0.25, G:0.32, T:0.17
Consensus pattern (21 bp):
AGGGCAACATGCCCGTGTAGA
Found at i:86202922 original size:94 final size:92
Alignment explanation
Indices: 86202780--86202951 Score: 251
Period size: 94 Copynumber: 1.8 Consensus size: 92
86202770 CTCTCGTAGC
*
86202780 TGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCCGATGCATATCCCAGACAT
1 TGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTCGAGGCCGATGCATATCCCAGACAT
86202845 GTCTTACACTAGCACTAGTCCCAATGT
66 GTCTTACACTAGCACTAGTCCCAATGT
* *
86202872 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CGT-TAG-GTAGCCGATGCATGTCCCA
1 TGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TACGTCTCGAG--GCCGATGCATATCCCA
86202934 GACATGTCTTACACTAGC
61 GACATGTCTTACACTAGC
86202952 TCACACAAGT
Statistics
Matches: 72, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
92 6 0.08
93 16 0.22
94 49 0.68
95 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (92 bp):
TGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTCGAGGCCGATGCATATCCCAGACAT
GTCTTACACTAGCACTAGTCCCAATGT
Found at i:86202953 original size:46 final size:46
Alignment explanation
Indices: 86202775--86202953 Score: 186
Period size: 46 Copynumber: 3.8 Consensus size: 46
86202765 CACACCTCTC
* * *
86202775 GTAGCTGATGCATGTCCCAGACATGTCTTACACTGGCT-TACGTCTC
1 GTAGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTA
* * * *
86202821 G-AGGCCGATGCATATCCCAGACATGTCTTACACTAGCACTAGTCCCA
1 GTA-GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGT-CTA
* **
86202868 AT-GTTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGT-TA
1 GTAGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTCTA
86202914 GGTAGCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
1 -GTAGCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
86202954 ACACAAGTGA
Statistics
Matches: 108, Mismatches: 17, Indels: 16
0.77 0.12 0.11
Matches are distributed among these distances:
45 1 0.01
46 55 0.51
47 30 0.28
48 22 0.20
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (46 bp):
GTAGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTA
Found at i:86206959 original size:51 final size:51
Alignment explanation
Indices: 86206882--86207080 Score: 344
Period size: 51 Copynumber: 3.9 Consensus size: 51
86206872 CAGATACACG
* *
86206882 GTGGCCTTCACATAGTACCACCCTTGTATCCAAAGCTATTTTATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
*
86206933 GTGGCCTTCACATAGTACCATACTTGTGTCCAAAGCTATTTTATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
*
86206984 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
* *
86207035 GTGGCCTTCACATAGTACCACAATTGTGTCTAAAGCTATTTTATTC
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
86207081 CTAAGGTTCA
Statistics
Matches: 140, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 140 1.00
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.33
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
Found at i:86207151 original size:24 final size:23
Alignment explanation
Indices: 86207117--86207186 Score: 95
Period size: 24 Copynumber: 3.0 Consensus size: 23
86207107 CTTAGCACAA
*
86207117 TGCCATGGACTTATTTCACTTGG
1 TGCCATGGACTTATTTCACTTAG
*
86207140 TTGCCATAGACTTATTTCACTTAG
1 -TGCCATGGACTTATTTCACTTAG
* *
86207164 AGCCATGGTCTTATTTCACTTAG
1 TGCCATGGACTTATTTCACTTAG
86207187 CACAATGTCA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
23 20 0.49
24 21 0.51
ACGTcount: A:0.21, C:0.21, G:0.17, T:0.40
Consensus pattern (23 bp):
TGCCATGGACTTATTTCACTTAG
Found at i:86207176 original size:23 final size:24
Alignment explanation
Indices: 86207118--86207186 Score: 95
Period size: 23 Copynumber: 2.9 Consensus size: 24
86207108 TTAGCACAAT
* *
86207118 GCCATGGACTTATTTCACTTGGTT
1 GCCATGGACTTATTTCACTTAGTA
*
86207142 GCCATAGACTTATTTCACTTAG-A
1 GCCATGGACTTATTTCACTTAGTA
*
86207165 GCCATGGTCTTATTTCACTTAG
1 GCCATGGACTTATTTCACTTAG
86207187 CACAATGTCA
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
23 20 0.50
24 20 0.50
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.39
Consensus pattern (24 bp):
GCCATGGACTTATTTCACTTAGTA
Found at i:86208296 original size:13 final size:13
Alignment explanation
Indices: 86208278--86208312 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
86208268 CCAAACGTCA
**
86208278 AAATTTTCGGACG
1 AAATTTTCAAACG
86208291 AAATTTTCAAACG
1 AAATTTTCAAACG
86208304 AAATTTTCA
1 AAATTTTCA
86208313 TGAAATCATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.40, C:0.14, G:0.11, T:0.34
Consensus pattern (13 bp):
AAATTTTCAAACG
Found at i:86212089 original size:43 final size:42
Alignment explanation
Indices: 86212037--86212124 Score: 115
Period size: 43 Copynumber: 2.1 Consensus size: 42
86212027 TTCGTGATAT
* *
86212037 ATGTAGCATCCGAGCTCGTTGACTGG-TCTGAGTTCATTATGG
1 ATGTAGCATCCGAGCTCATTGACTGGTTC-GAGTTCATAATGG
* *
86212079 ATGTGAGCATCTGAGCTCATTGAGTGGTTCGAGTTCATAATGG
1 ATGT-AGCATCCGAGCTCATTGACTGGTTCGAGTTCATAATGG
86212122 ATG
1 ATG
86212125 CGATACATGT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
42 4 0.10
43 34 0.85
44 2 0.05
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.33
Consensus pattern (42 bp):
ATGTAGCATCCGAGCTCATTGACTGGTTCGAGTTCATAATGG
Found at i:86214120 original size:22 final size:22
Alignment explanation
Indices: 86214084--86214139 Score: 85
Period size: 22 Copynumber: 2.5 Consensus size: 22
86214074 CGACCTGAGG
*
86214084 ACACGAGCGTGTCCCTGTGTCC
1 ACACGGGCGTGTCCCTGTGTCC
* *
86214106 ACATGGGTGTGTCCCTGTGTCC
1 ACACGGGCGTGTCCCTGTGTCC
86214128 ACACGGGCGTGT
1 ACACGGGCGTGT
86214140 GACCCTGTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.12, C:0.30, G:0.32, T:0.25
Consensus pattern (22 bp):
ACACGGGCGTGTCCCTGTGTCC
Found at i:86214145 original size:24 final size:23
Alignment explanation
Indices: 86214084--86214147 Score: 78
Period size: 22 Copynumber: 2.8 Consensus size: 23
86214074 CGACCTGAGG
*
86214084 ACACGAGCGTGT-CCCTGTGTCC
1 ACACGGGCGTGTGCCCTGTGTCC
* *
86214106 ACATGGGTGTGT-CCCTGTGTCC
1 ACACGGGCGTGTGCCCTGTGTCC
86214128 ACACGGGCGTGTGACCCTGT
1 ACACGGGCGTGTG-CCCTGT
86214148 TTCATGAATA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
22 29 0.83
24 6 0.17
ACGTcount: A:0.12, C:0.31, G:0.31, T:0.25
Consensus pattern (23 bp):
ACACGGGCGTGTGCCCTGTGTCC
Found at i:86215965 original size:15 final size:15
Alignment explanation
Indices: 86215921--86215966 Score: 74
Period size: 15 Copynumber: 3.1 Consensus size: 15
86215911 TATGATATTG
* *
86215921 TATCTTAGATTTCTG
1 TATCTTGGATTTCTT
86215936 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
86215951 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
86215966 T
1 T
86215967 GCCCTAGACT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.15, C:0.13, G:0.13, T:0.59
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:86219120 original size:43 final size:42
Alignment explanation
Indices: 86219018--86219128 Score: 123
Period size: 43 Copynumber: 2.6 Consensus size: 42
86219008 CCAAAATCAG
* * ** *
86219018 TGAGTGGTCCGGGTTCATGATATATGTGGCATCCGAGCTCGT
1 TGAGTGGTCCGAGTTCATAATGGATGCGGCATCCGAGCTCGT
** * * *
86219060 TGAGTGGTCTAAATTCATTATGGATGCGAGCATCTGAGCTCGT
1 TGAGTGGTCCGAGTTCATAATGGATGCG-GCATCCGAGCTCGT
86219103 TGAGTGGTCCGAGTTCATAATGGATG
1 TGAGTGGTCCGAGTTCATAATGGATG
86219129 TGATACATGT
Statistics
Matches: 55, Mismatches: 13, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
42 20 0.36
43 35 0.64
ACGTcount: A:0.21, C:0.16, G:0.32, T:0.32
Consensus pattern (42 bp):
TGAGTGGTCCGAGTTCATAATGGATGCGGCATCCGAGCTCGT
Found at i:86229480 original size:53 final size:54
Alignment explanation
Indices: 86229394--86229511 Score: 166
Period size: 53 Copynumber: 2.2 Consensus size: 54
86229384 GATGTTTTTT
* * *
86229394 GGGGTTTAGGGTTTTAAAGGTTATAGTTTAGTGTTTAGGGTTTTTTAAGGTTTA
1 GGGGTTTAGGGTTTTAAAGGTTATAGATTAGTGTTTAAGATTTTTTAAGGTTTA
* * *
86229448 GGGGTTTAGTGTTTT-AGGGTTATAGATTAGTGTTTAAGATTTTTTGAGGTTTA
1 GGGGTTTAGGGTTTTAAAGGTTATAGATTAGTGTTTAAGATTTTTTAAGGTTTA
*
86229501 GGGTTTTAGGG
1 GGGGTTTAGGG
86229512 GTTATATGAA
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 42 0.75
54 14 0.25
ACGTcount: A:0.19, C:0.00, G:0.33, T:0.47
Consensus pattern (54 bp):
GGGGTTTAGGGTTTTAAAGGTTATAGATTAGTGTTTAAGATTTTTTAAGGTTTA
Found at i:86229585 original size:41 final size:41
Alignment explanation
Indices: 86229522--86229771 Score: 265
Period size: 41 Copynumber: 6.1 Consensus size: 41
86229512 GTTATATGAA
* * * * * *
86229522 TTTTAGCGGCGTGTTACTGAAAGCACCGTTAATGCTCCGAT
1 TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCTGGT
* * *
86229563 TTTTAGCGGCGTTTTATC-GAAAGTGCCGCTAATGCTTTGGC
1 TTTTAGCGGCGTTTTA-CAGAAAGCGCCGCTAATGCTCTGGT
* *
86229604 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGC
1 TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCTGGT
* * * * *
86229645 TTTTAGTGGTGCTTTACATAAAGC-CCAGCTAATTCTCTGGT
1 TTTTAGCGGCGTTTTACAGAAAGCGCC-GCTAATGCTCTGGT
* *
86229686 TTTTAGCGGCGTTTTACAGAAATCACCGCTAATG-TCTGGT
1 TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCTGGT
* * *
86229726 TTTTAGCGGTGTTTTACCGAAAGCGCCG-TAATGCTCTAGT
1 TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCTGGT
86229766 TTTTAG
1 TTTTAG
86229772 TGTCACTATT
Statistics
Matches: 176, Mismatches: 28, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
39 5 0.03
40 44 0.25
41 124 0.70
42 3 0.02
ACGTcount: A:0.20, C:0.21, G:0.24, T:0.35
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCTGGT
Found at i:86229807 original size:21 final size:23
Alignment explanation
Indices: 86229759--86229815 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 23
86229749 CGCCGTAATG
* *
86229759 CTCTAGTTTTTAGTGTCACTATTG
1 CTCTAGTTTTTAGCGT-ACTATTA
86229783 CTCTA-TTTTTAGCGT-CTATTA
1 CTCTAGTTTTTAGCGTACTATTA
86229804 CTCT-GTGTTTTA
1 CTCTAGT-TTTTA
86229816 CAATTTTTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
21 10 0.34
22 5 0.17
23 9 0.31
24 5 0.17
ACGTcount: A:0.16, C:0.18, G:0.14, T:0.53
Consensus pattern (23 bp):
CTCTAGTTTTTAGCGTACTATTA
Found at i:86233905 original size:27 final size:26
Alignment explanation
Indices: 86233874--86234051 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
86233864 TAAATTGTAC
86233874 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
86233901 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
86233927 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
86233955 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
86233983 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
86234010 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
86234037 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
86234052 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.01
27 103 0.80
28 25 0.19
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:86233990 original size:82 final size:81
Alignment explanation
Indices: 86233875--86234030 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
86233865 AAATTGTACA
* *
86233875 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
86233939 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
86233956 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
86234021 TGCGAGTTGA
65 TGCGAATTGA
86234031 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:86234042 original size:82 final size:81
Alignment explanation
Indices: 86233871--86234051 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
86233861 GATTAAATTG
* *
86233871 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
86233936 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
86233952 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
86234016 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
86234034 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
86234052 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:86234062 original size:27 final size:27
Alignment explanation
Indices: 86233956--86234062 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
86233946 TGACCATGCG
* * * *
86233956 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
86233984 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
86234011 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
86234038 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
86234063 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:86241970 original size:27 final size:27
Alignment explanation
Indices: 86241939--86242116 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
86241929 TAAATTGTAC
86241939 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
86241966 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
86241992 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
86242020 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
86242048 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
86242075 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
86242102 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
86242117 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:86242053 original size:82 final size:81
Alignment explanation
Indices: 86241940--86242095 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
86241930 AAATTGTACA
* *
86241940 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
86242004 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
86242021 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
86242086 TGCGAGTTGA
65 TGCGAATTGA
86242096 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:86242107 original size:82 final size:81
Alignment explanation
Indices: 86241936--86242116 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
86241926 GATTAAATTG
* *
86241936 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
86242001 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
86242017 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
86242081 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
86242099 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
86242117 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:86247513 original size:23 final size:23
Alignment explanation
Indices: 86247484--86247535 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
86247474 GTTGATGGAC
** *
86247484 AGTAAGCTCTATTGGGCTAAAAT
1 AGTAAGCTCTAACGAGCTAAAAT
*
86247507 GGTAAGCTCTAACGAGCTAAAAT
1 AGTAAGCTCTAACGAGCTAAAAT
86247530 AGTAAG
1 AGTAAG
86247536 ACTCATACAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.38, C:0.13, G:0.23, T:0.25
Consensus pattern (23 bp):
AGTAAGCTCTAACGAGCTAAAAT
Found at i:86277544 original size:89 final size:89
Alignment explanation
Indices: 86277391--86277555 Score: 312
Period size: 89 Copynumber: 1.9 Consensus size: 89
86277381 CACAGGCATA
*
86277391 GACACGGGTTGGGACAAAGCCATGTGACCCTAATTTGAATGTCCACACGACCTGAGACATGAGCG
1 GACACGGGTTGGGACAAAGCCATGTGACCCTAATTTGAATGTCCACACGACCTGAGACACGAGCG
86277456 TGTGTCTCAACGTGTGGGTCACAC
66 TGTGTCTCAACGTGTGGGTCACAC
*
86277480 GACACGGGTTGGGACAAAGCCATGTGACCCTAATTTGAATGTCCATACGACCTGAGACACGAGCG
1 GACACGGGTTGGGACAAAGCCATGTGACCCTAATTTGAATGTCCACACGACCTGAGACACGAGCG
86277545 TGTGTCTCAAC
66 TGTGTCTCAAC
86277556 CTGTAGTGTA
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
89 74 1.00
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.21
Consensus pattern (89 bp):
GACACGGGTTGGGACAAAGCCATGTGACCCTAATTTGAATGTCCACACGACCTGAGACACGAGCG
TGTGTCTCAACGTGTGGGTCACAC
Found at i:86287705 original size:17 final size:17
Alignment explanation
Indices: 86287683--86287727 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
86287673 TTGTCATCGC
86287683 AAGTCCATCACTGTCGA
1 AAGTCCATCACTGTCGA
* *
86287700 AAGTCCATCTCTGTCGT
1 AAGTCCATCACTGTCGA
*
86287717 AAGTCTATCAC
1 AAGTCCATCAC
86287728 CTTCGCAAGC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.29
Consensus pattern (17 bp):
AAGTCCATCACTGTCGA
Found at i:86291734 original size:27 final size:27
Alignment explanation
Indices: 86291704--86291881 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
86291694 ATATTGAGTC
* * * *
86291704 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
86291731 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
86291758 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
86291786 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
86291813 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
86291840 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
86291867 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
86291882 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:86291843 original size:82 final size:81
Alignment explanation
Indices: 86291725--86291880 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
86291715 TGCTATATAA
* *
86291725 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
86291790 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
86291807 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
86291871 CACTTAGTGC
65 CACTTAGTGC
86291881 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:86302217 original size:34 final size:34
Alignment explanation
Indices: 86302168--86302295 Score: 184
Period size: 34 Copynumber: 3.8 Consensus size: 34
86302158 CATTCAGTTG
86302168 TAGAATAACTCATCATTTGCACAACATTCAACCA
1 TAGAATAACTCATCATTTGCACAACATTCAACCA
* * * * * *
86302202 TAAAACAACTTATCATTTTCACAAAATTCAGCCA
1 TAGAATAACTCATCATTTGCACAACATTCAACCA
* *
86302236 TAGAATAACTTATCATTTGCACAACATTCAATCA
1 TAGAATAACTCATCATTTGCACAACATTCAACCA
86302270 TAGAATAACTCATCATTTGCACAACA
1 TAGAATAACTCATCATTTGCACAACA
86302296 CTAAGTTAAA
Statistics
Matches: 81, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 81 1.00
ACGTcount: A:0.42, C:0.23, G:0.05, T:0.29
Consensus pattern (34 bp):
TAGAATAACTCATCATTTGCACAACATTCAACCA
Found at i:86307431 original size:40 final size:40
Alignment explanation
Indices: 86307357--86307618 Score: 456
Period size: 40 Copynumber: 6.6 Consensus size: 40
86307347 AACCCAAGTA
* *
86307357 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
86307396 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
86307436 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
86307476 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
86307516 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
86307556 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
86307596 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
86307619 CATTCGAATA
Statistics
Matches: 213, Mismatches: 8, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
39 12 0.06
40 198 0.93
41 3 0.01
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:86317152 original size:22 final size:21
Alignment explanation
Indices: 86317127--86317174 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
86317117 ATCATGTCTA
86317127 ATTTATTATTACAATAAATATT
1 ATTTATTATTACAAT-AATATT
* **
86317149 ATTTATTGTTTTAATAATATT
1 ATTTATTATTACAATAATATT
86317170 ATTTA
1 ATTTA
86317175 ATAACAACAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 11 0.48
22 12 0.52
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (21 bp):
ATTTATTATTACAATAATATT
Found at i:86317874 original size:17 final size:18
Alignment explanation
Indices: 86317848--86317898 Score: 59
Period size: 17 Copynumber: 2.8 Consensus size: 18
86317838 ATTAAATCTA
*
86317848 TATAAGATATTATTT-AT
1 TATAAAATATTATTTGAT
86317865 TATAAAATATTATCTTGAT
1 TATAAAATATTAT-TTGAT
*
86317884 CATAAAATAATTATT
1 TATAAAAT-ATTATT
86317899 AATTGTTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 12 0.41
18 2 0.07
19 10 0.34
20 5 0.17
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (18 bp):
TATAAAATATTATTTGAT
Found at i:86325363 original size:40 final size:40
Alignment explanation
Indices: 86325265--86325527 Score: 309
Period size: 40 Copynumber: 6.6 Consensus size: 40
86325255 TCCTCGTTCA
* * * ** *
86325265 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
86325304 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
86325344 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
86325384 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
86325424 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
86325464 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
86325504 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
86325528 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 37 0.19
40 154 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Done.