Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 261 of 276
Found at i:86334698 original size:40 final size:40
Alignment explanation
Indices: 86334654--86334921 Score: 473
Period size: 40 Copynumber: 6.7 Consensus size: 40
86334644 GCAAACACAT
* *
86334654 TTGCCTTCGGGTCTTAGCCCGAACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
86334694 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
86334734 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
86334774 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
86334814 TTGCCTTCGGGTCCTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
86334854 TTGCCTTCGGGTCCTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
86334894 TTGCCTTCGGGTCATAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
86334922 TCCAATGCTC
Statistics
Matches: 221, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 221 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.29
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:86337759 original size:20 final size:19
Alignment explanation
Indices: 86337732--86337773 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
86337722 CCTTTCAAAT
86337732 TTTCTTACTTT-CATTTGCA
1 TTTCTTACTTTCCA-TTGCA
86337751 TTTCATTACTTTCCATTGCA
1 TTTC-TTACTTTCCATTGCA
86337771 TTT
1 TTT
86337774 ACTTTGCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.19
20 15 0.71
21 2 0.10
ACGTcount: A:0.17, C:0.21, G:0.05, T:0.57
Consensus pattern (19 bp):
TTTCTTACTTTCCATTGCA
Found at i:86337777 original size:16 final size:16
Alignment explanation
Indices: 86337756--86337810 Score: 85
Period size: 16 Copynumber: 3.5 Consensus size: 16
86337746 TTGCATTTCA
86337756 TTACTTTCCATTGCAT
1 TTACTTTCCATTGCAT
* *
86337772 TTACTTTGCATTTCA-
1 TTACTTTCCATTGCAT
86337787 TTACTTTCCATTGCAT
1 TTACTTTCCATTGCAT
86337803 TTACTTTC
1 TTACTTTC
86337811 TTTAACTTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
15 13 0.38
16 21 0.62
ACGTcount: A:0.18, C:0.24, G:0.05, T:0.53
Consensus pattern (16 bp):
TTACTTTCCATTGCAT
Found at i:86337780 original size:31 final size:31
Alignment explanation
Indices: 86337745--86337809 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
86337735 CTTACTTTCA
86337745 TTTGCATTTCATTACTTTCCATTGCATTTAC
1 TTTGCATTTCATTACTTTCCATTGCATTTAC
86337776 TTTGCATTTCATTACTTTCCATTGCATTTAC
1 TTTGCATTTCATTACTTTCCATTGCATTTAC
86337807 TTT
1 TTT
86337810 CTTTAACTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.18, C:0.22, G:0.06, T:0.54
Consensus pattern (31 bp):
TTTGCATTTCATTACTTTCCATTGCATTTAC
Found at i:86341063 original size:35 final size:35
Alignment explanation
Indices: 86341024--86341090 Score: 98
Period size: 35 Copynumber: 1.9 Consensus size: 35
86341014 ATATTTGGCC
86341024 ACATGTAATGTTATATTAAACTTGAATATTCGACT
1 ACATGTAATGTTATATTAAACTTGAATATTCGACT
* * * *
86341059 ACATGTGATGTTTTATTGAACTTGTATATTCG
1 ACATGTAATGTTATATTAAACTTGAATATTCG
86341091 GTCATATATG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 28 1.00
ACGTcount: A:0.31, C:0.10, G:0.15, T:0.43
Consensus pattern (35 bp):
ACATGTAATGTTATATTAAACTTGAATATTCGACT
Found at i:86341103 original size:35 final size:35
Alignment explanation
Indices: 86341035--86341167 Score: 113
Period size: 35 Copynumber: 3.8 Consensus size: 35
86341025 CATGTAATGT
* * * * * * *
86341035 TATATTAAACTTGAATATTCGACTACATGTGATGT
1 TATATTGAACTTGTATATTCGGCCATATATGATGA
* *
86341070 TTTATTGAACTTGTATATTCGGTCATATATGATGA
1 TATATTGAACTTGTATATTCGGCCATATATGATGA
* * *
86341105 TATATTGTACTTGTATATTTGGCCATATGTGATGA
1 TATATTGAACTTGTATATTCGGCCATATATGATGA
* * * *
86341140 TATAATGAACCATGTGTATTAGGCCATA
1 TATATTGAA-CTTGTATATTCGGCCATA
86341168 CAAGTAAGTA
Statistics
Matches: 78, Mismatches: 19, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
35 63 0.81
36 15 0.19
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.41
Consensus pattern (35 bp):
TATATTGAACTTGTATATTCGGCCATATATGATGA
Found at i:86341649 original size:9 final size:9
Alignment explanation
Indices: 86341635--86341659 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
86341625 CAACTCCACA
86341635 TATTTCATT
1 TATTTCATT
86341644 TATTTCATT
1 TATTTCATT
86341653 TATTTCA
1 TATTTCA
86341660 CATTTTAGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (9 bp):
TATTTCATT
Found at i:86346769 original size:23 final size:22
Alignment explanation
Indices: 86346730--86346788 Score: 82
Period size: 23 Copynumber: 2.6 Consensus size: 22
86346720 GTTAGTATCT
*
86346730 CACACGCCCTGTGAAGAAATAG
1 CACACGCCGTGTGAAGAAATAG
*
86346752 CACACGCCTGTGTGAAGACATAG
1 CACACGCC-GTGTGAAGAAATAG
86346775 CACACGCCAGTGTG
1 CACACGCC-GTGTG
86346789 CTTTGGGACA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
22 8 0.24
23 25 0.76
ACGTcount: A:0.31, C:0.29, G:0.25, T:0.15
Consensus pattern (22 bp):
CACACGCCGTGTGAAGAAATAG
Found at i:86347960 original size:22 final size:22
Alignment explanation
Indices: 86347932--86347976 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
86347922 AATCAACAAG
*
86347932 TTAGTCCCATAAGAATACACCA
1 TTAGTCCCATAACAATACACCA
86347954 TTAGTCCCATAACAATACACCA
1 TTAGTCCCATAACAATACACCA
86347976 T
1 T
86347977 GTAATTTGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.40, C:0.29, G:0.07, T:0.24
Consensus pattern (22 bp):
TTAGTCCCATAACAATACACCA
Found at i:86350713 original size:27 final size:27
Alignment explanation
Indices: 86350678--86350757 Score: 106
Period size: 27 Copynumber: 3.0 Consensus size: 27
86350668 CAACACATAG
86350678 GGGCAAAACAGTCATCTTACCATATAA
1 GGGCAAAACAGTCATCTTACCATATAA
* **
86350705 GGGCGAAACAACCATCTTACCATATAA
1 GGGCAAAACAGTCATCTTACCATATAA
* * *
86350732 GGGCAAAATAGTCATTTTATCATATA
1 GGGCAAAACAGTCATCTTACCATATA
86350758 CGGGGTCTAG
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.40, C:0.20, G:0.15, T:0.25
Consensus pattern (27 bp):
GGGCAAAACAGTCATCTTACCATATAA
Found at i:86361013 original size:46 final size:45
Alignment explanation
Indices: 86360867--86361071 Score: 187
Period size: 46 Copynumber: 4.4 Consensus size: 45
86360857 CATGATCCAA
* * * * *
86360867 ACATGGTCTTACACTGGCTCACATATCTAAGACGATGCCATGTCCCAG
1 ACAT-GTCTTACACTAGCTCTCATCT-TATGCCGATG-CATGTCCCAG
* * *
86360915 ACAGGTCTTACACTAGCT-TGCATATCTTGACGTCGATGCATGTCCCAG
1 ACATGTCTTACACTAGCTCT-C--ATCTT-ATGCCGATGCATGTCCCAG
*
86360963 ACATGTCTTACACTAGCTCTCGTCTTAATGCCGATGCATGTCCCAG
1 ACATGTCTTACACTAGCTCTCATCTT-ATGCCGATGCATGTCCCAG
* ** * * *
86361009 ACATGTCTTACACTGGCTCTCATAATGTGGCTGATGCATGTCCTAG
1 ACATGTCTTACACTAGCTCTCATCTTAT-GCCGATGCATGTCCCAG
86361055 ACATGTCTTACACTAGC
1 ACATGTCTTACACTAGC
86361072 ACACATATCA
Statistics
Matches: 132, Mismatches: 19, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
45 1 0.01
46 74 0.56
47 14 0.11
48 32 0.24
49 11 0.08
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (45 bp):
ACATGTCTTACACTAGCTCTCATCTTATGCCGATGCATGTCCCAG
Found at i:86361064 original size:92 final size:95
Alignment explanation
Indices: 86360899--86361071 Score: 248
Period size: 94 Copynumber: 1.9 Consensus size: 95
86360889 ATATCTAAGA
*
86360899 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGCATATCTTGACGTCGATGCATGTCCCAGA
1 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGCATATCGTGACGTCGATGCATGTCCCAGA
86360964 CATGTCTTACACTAGCTCTCGTCTTAATGC
66 CATGTCTTACACTAGCTCTCGTCTTAATGC
* * * *
86360994 CGATG-CATGTCCCAGACATGTCTTACACTGGCTCT-CATAAT-GTGGC-T-GATGCATGTCCTA
1 CGATGCCATGTCCCAGACAGGTCTTACACTAGCT-TGCAT-ATCGTGACGTCGATGCATGTCCCA
86361054 GACATGTCTTACACTAGC
64 GACATGTCTTACACTAGC
86361072 ACACATATCA
Statistics
Matches: 71, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
92 30 0.42
93 1 0.01
94 32 0.45
95 8 0.11
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (95 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGCATATCGTGACGTCGATGCATGTCCCAGA
CATGTCTTACACTAGCTCTCGTCTTAATGC
Found at i:86368370 original size:21 final size:24
Alignment explanation
Indices: 86368323--86368374 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 24
86368313 TCCTAACATG
86368323 ATCAAAACTCATACTTCAAATTCTC
1 ATCAAAACTCATACTT-AAATTCTC
*
86368348 ATCAAAA-TCATGCTT-AATT-TC
1 ATCAAAACTCATACTTAAATTCTC
86368369 ATCAAA
1 ATCAAA
86368375 GATACATTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 8 0.31
22 4 0.15
24 7 0.27
25 7 0.27
ACGTcount: A:0.42, C:0.23, G:0.02, T:0.33
Consensus pattern (24 bp):
ATCAAAACTCATACTTAAATTCTC
Found at i:86377088 original size:31 final size:31
Alignment explanation
Indices: 86377050--86377115 Score: 132
Period size: 31 Copynumber: 2.1 Consensus size: 31
86377040 ACACCGCTGG
86377050 CACTCAGGTTTAACAAATCTCGAGTTCCCTA
1 CACTCAGGTTTAACAAATCTCGAGTTCCCTA
86377081 CACTCAGGTTTAACAAATCTCGAGTTCCCTA
1 CACTCAGGTTTAACAAATCTCGAGTTCCCTA
86377112 CACT
1 CACT
86377116 GGCTGCCGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.29, C:0.30, G:0.12, T:0.29
Consensus pattern (31 bp):
CACTCAGGTTTAACAAATCTCGAGTTCCCTA
Found at i:86377257 original size:40 final size:40
Alignment explanation
Indices: 86377213--86377290 Score: 147
Period size: 40 Copynumber: 1.9 Consensus size: 40
86377203 AACGAGGATT
86377213 CATATTCCTTGACTTTCCAGGTTGCTGTGAAAATGAACCG
1 CATATTCCTTGACTTTCCAGGTTGCTGTGAAAATGAACCG
*
86377253 CATATTCCTTGACTTTCTAGGTTGCTGTGAAAATGAAC
1 CATATTCCTTGACTTTCCAGGTTGCTGTGAAAATGAAC
86377291 TACTCATCGG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.35
Consensus pattern (40 bp):
CATATTCCTTGACTTTCCAGGTTGCTGTGAAAATGAACCG
Found at i:86379652 original size:93 final size:93
Alignment explanation
Indices: 86379539--86379710 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
86379529 CGCCCATAAG
*
86379539 CGAACTCGGACTCAACTCAACGAGCTCGGGCGA-TCACATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCGGAC-ATTCACATCCATAAGTGAACTCGGACTCAACTC
86379603 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
* *
86379632 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
86379697 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
86379711 TCAACGATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 1 0.01
93 74 0.99
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:86379654 original size:47 final size:49
Alignment explanation
Indices: 86379532--86379710 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 49
86379522 TGTAACCCGC
* *
86379532 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--GCGA-TCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
86379578 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
* *
86379628 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
86379671 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
86379711 TCAACGATCC
Statistics
Matches: 113, Mismatches: 8, Indels: 21
0.80 0.06 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.56
47 29 0.26
48 4 0.04
49 2 0.02
50 4 0.04
51 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.20
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:86387438 original size:48 final size:47
Alignment explanation
Indices: 86387367--86387555 Score: 173
Period size: 48 Copynumber: 3.9 Consensus size: 47
86387357 ACATTTGGGT
* * *
86387367 GATATGTGTGCCAGTGTAAGACCATGTCTAGG-ACATGGCGTCGGCCAC
1 GATATGAGAGCCAGTGTAAGACCATGT-T-GGAACATGGCATCGGCCAC
* ** ** *
86387415 GATATGAGAGCTAGTGTAAGACCATGATTGGAACATGGCATTAGTGAT
1 GATATGAGAGCCAGTGTAAGACCATG-TTGGAACATGGCATCGGCCAC
* * * * * *
86387463 GTTGTGAGAGCCAATGTAAGACCATGTCTGGGACATGGCATCGACCTC
1 GATATGAGAGCCAGTGTAAGACCATGT-TGGAACATGGCATCGGCCAC
* *
86387511 GACATGCGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGC
1 GATATGAGAGCCAGTGTAAGACCATG-TTGGAACATGGCATCGGC
86387556 AATTCACCCT
Statistics
Matches: 109, Mismatches: 28, Indels: 8
0.75 0.19 0.06
Matches are distributed among these distances:
47 3 0.03
48 104 0.95
49 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (47 bp):
GATATGAGAGCCAGTGTAAGACCATGTTGGAACATGGCATCGGCCAC
Found at i:86387545 original size:96 final size:96
Alignment explanation
Indices: 86387376--86387551 Score: 271
Period size: 96 Copynumber: 1.8 Consensus size: 96
86387366 TGATATGTGT
* * * * *
86387376 GCCAGTGTAAGACCATGTCTAGGACATGGCGTCGGCCACGATATGAGAGCTAGTGTAAGACCATG
1 GCCAATGTAAGACCATGTCTAGGACATGGCATCGACCACGACATGAGAGCCAGTGTAAGACCATG
86387441 ATTGGAACATGGCATTAGTGATGTTGTGAGA
66 ATTGGAACATGGCATTAGTGATGTTGTGAGA
* * *
86387472 GCCAATGTAAGACCATGTCTGGGACATGGCATCGACCTCGACATGCGAGCCAGTGTAAGACCATG
1 GCCAATGTAAGACCATGTCTAGGACATGGCATCGACCACGACATGAGAGCCAGTGTAAGACCATG
*
86387537 TTTGGAACATGGCAT
66 ATTGGAACATGGCAT
86387552 CGGCAATTCA
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
96 71 1.00
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (96 bp):
GCCAATGTAAGACCATGTCTAGGACATGGCATCGACCACGACATGAGAGCCAGTGTAAGACCATG
ATTGGAACATGGCATTAGTGATGTTGTGAGA
Found at i:86390573 original size:42 final size:42
Alignment explanation
Indices: 86390526--86390622 Score: 142
Period size: 42 Copynumber: 2.3 Consensus size: 42
86390516 ATAGCCTAGC
86390526 TATGGTCTTACACGAAACCTCAT-ATCGATGCCATATCCCAAA
1 TATGGTCTTACACGAAACCTCATAAT-GATGCCATATCCCAAA
** * *
86390568 TATGGTCTTACACGAAGTCTCATAATGATGTCATATCCCAGA
1 TATGGTCTTACACGAAACCTCATAATGATGCCATATCCCAAA
86390610 TATGGTCTTACAC
1 TATGGTCTTACAC
86390623 ATAGCCTTGG
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
42 48 0.96
43 2 0.04
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (42 bp):
TATGGTCTTACACGAAACCTCATAATGATGCCATATCCCAAA
Found at i:86395389 original size:55 final size:54
Alignment explanation
Indices: 86395264--86395559 Score: 325
Period size: 53 Copynumber: 5.5 Consensus size: 54
86395254 GGCTTACCAT
* * * * *
86395264 TGCCATGTCTTGACATGGTCTTACGTGGTATCC-TTGCCTTGT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGGA-CCTTTGCCTTATAGAACTCATCAA
* *
86395317 TGCCATGCCTTGGCATGGTTTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGGACCTTTGCCTTATAG-AACTCATCAA
** * * *
86395372 TGTGATGTCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGGA-CCTTTGCCTTATAGAACTCATCAA
** *
86395425 TTTCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGGACCTTTGCCTTATAG-AACTCATCAA
* ** *
86395480 TGCCATGTCTTGACATGGTCTTACAT--GATTTCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGGACCT-TTGCCTTATAGAACTCATCAA
*
86395533 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
86395560 ATATCCTTAT
Statistics
Matches: 205, Mismatches: 29, Indels: 17
0.82 0.12 0.07
Matches are distributed among these distances:
52 4 0.02
53 112 0.55
54 14 0.07
55 73 0.36
56 2 0.01
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.36
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGGGACCTTTGCCTTATAGAACTCATCAA
Found at i:86395457 original size:108 final size:108
Alignment explanation
Indices: 86395267--86395660 Score: 502
Period size: 108 Copynumber: 3.7 Consensus size: 108
86395257 TTACCATTGC
* *
86395267 CATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTGTGAACTCACCAATGCCATGCCTTGGCA
1 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGCA
*
86395332 TGGTTTTACATGGGACCTTTGCCTTATAGTAACTCATCAATGT
66 TGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAATGT
* **
86395375 GATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATTTCATGCCTTGGCA
1 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGCA
*
86395440 TGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAATGC
66 TGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAATGT
* * * *
86395483 CATGTCTTGACATGGTCTTACATGAT-TTCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGC
1 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCACCAATGCCATGCCTTGGC
* * *
86395547 ATGGTCTTACAT--GA--TAT-CCTTAT-CTTAC-CA--AATGT
65 ATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAATGT
*** * * * *
86395582 CATGTTCCAAACATGGTCTTACATGGTATCCTTGTCTTATTGAACTTATCAATGCAATGCCTTGG
1 CATG-TCTTGACATGGTCTTACATGGTATCCTTGCCTTA-TGAACTCACCAATGCCATGCCTTGG
86395647 CATGGTCTTACATG
64 CATGGTCTTACATG
86395661 ATATCCTTAT
Statistics
Matches: 256, Mismatches: 25, Indels: 16
0.86 0.08 0.05
Matches are distributed among these distances:
99 8 0.03
100 18 0.07
101 47 0.18
102 4 0.02
103 6 0.02
104 2 0.01
106 2 0.01
107 11 0.04
108 158 0.62
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (108 bp):
CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGCA
TGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAATGT
Found at i:86395599 original size:47 final size:47
Alignment explanation
Indices: 86395546--86395721 Score: 136
Period size: 47 Copynumber: 3.6 Consensus size: 47
86395536 CATGCCTTGG
86395546 CATGGTCTTACATGATATCCTTATCTTACCAAATGTCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGTCATGTTCCAAA
* * ** * * * ***
86395593 CATGGTCTTACATGGTATCCTTGTCTTATTGAACTTATCAATGCAATGCCTTGG
1 CATGGTCTTACATGATATCCTTATCTTA-CCAA-ATGTC-ATG---TTCC-AAA
* * **
86395647 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGCTCTGAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGTCATGTTCCAAA
* * *
86395694 CATAGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGATATCCTTATCTTA
86395722 GTGCCAATGC
Statistics
Matches: 96, Mismatches: 26, Indels: 14
0.71 0.19 0.10
Matches are distributed among these distances:
47 51 0.53
48 3 0.03
49 3 0.03
50 3 0.03
51 3 0.03
52 2 0.02
53 5 0.05
54 26 0.27
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.38
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTATCTTACCAAATGTCATGTTCCAAA
Found at i:86395642 original size:101 final size:99
Alignment explanation
Indices: 86395256--86395721 Score: 400
Period size: 108 Copynumber: 4.5 Consensus size: 99
86395246 TCTTTTTGGG
* ** * * * *
86395256 CTTACC-ATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTT-GTGAACTCACCAATG
1 CTTACCAAATGCCATGTCTAAACATGGTCTTACATGGTATCCTTGCCTTATTGAACTTATCAATG
* *
86395319 CCATGCCTTGGCATGGTTTTACATGGGACCTTTGCCTTAT
66 -CATGCCTTGGCATGGTCTTACAT--GA--TAT-CCTTAT
* * ** ** * *
86395359 AGTAACTCATCAATGTGATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTA-TGAACTCACC
1 -CTTAC-CA--AATGCCATGTCTAAACATGGTCTTACATGGTATCCTTGCCTTATTGAACTTATC
* *
86395423 AATTTCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTAT
62 AA-TGCATGCCTTGGCATGGTCTTACAT--GA--TAT-CCTTAT
* * ** * * *
86395467 AGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGAT-TTCTTGCCTTATAGAACTTATC
1 -CTTAC-CA--AATGCCATGTCTAAACATGGTCTTACATGGTATCCTTGCCTTATTGAACTTATC
86395531 AATGCCATGCCTTGGCATGGTCTTACATGATATCCTTAT
62 AATG-CATGCCTTGGCATGGTCTTACATGATATCCTTAT
* * *
86395570 CTTACCAAATGTCATGTTCCAAACATGGTCTTACATGGTATCCTTGTCTTATTGAACTTATCAAT
1 CTTACCAAATGCCATG-TCTAAACATGGTCTTACATGGTATCCTTGCCTTATTGAACTTATCAAT
86395635 GCAATGCCTTGGCATGGTCTTACATGATATCCTTAT
65 GC-ATGCCTTGGCATGGTCTTACATGATATCCTTAT
* * *
86395671 CTTACCAAATGCCATGCTCTGAACATAGTCTTACATGGTATCCTTGTCTTA
1 CTTACCAAATGCCATG-TCTAAACATGGTCTTACATGGTATCCTTGCCTTA
86395722 GTGCCAATGC
Statistics
Matches: 319, Mismatches: 32, Indels: 25
0.85 0.09 0.07
Matches are distributed among these distances:
99 8 0.03
100 19 0.06
101 104 0.33
102 3 0.01
103 6 0.02
104 5 0.02
105 1 0.00
106 2 0.01
107 11 0.03
108 159 0.50
109 1 0.00
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (99 bp):
CTTACCAAATGCCATGTCTAAACATGGTCTTACATGGTATCCTTGCCTTATTGAACTTATCAATG
CATGCCTTGGCATGGTCTTACATGATATCCTTAT
Found at i:86395795 original size:47 final size:45
Alignment explanation
Indices: 86395725--86395890 Score: 181
Period size: 45 Copynumber: 3.6 Consensus size: 45
86395715 TGTCTTAGTG
** * * * *
86395725 CCAATGCCACATCTTGATGTGGTCTTACA-TGGAGTCCTTAATCAATG
1 CCAATGCCATGTCTTGATATGGTCTTACACGGGA-TCCTT--GCAATA
* **
86395772 CCGATGCCATGTCTTGATATGGTCTTACACGGGATCCTTGCCTTA
1 CCAATGCCATGTCTTGATATGGTCTTACACGGGATCCTTGCAATA
**
86395817 CCAATGCCATGTCTTGATATGGTCTTACACGGGATCCTTGCCTTA
1 CCAATGCCATGTCTTGATATGGTCTTACACGGGATCCTTGCAATA
* *
86395862 CCAATGCCTTGTCTTGACATGGTCTTACA
1 CCAATGCCATGTCTTGATATGGTCTTACA
86395891 TGGTACCCTT
Statistics
Matches: 106, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
45 73 0.69
47 30 0.28
48 3 0.03
ACGTcount: A:0.21, C:0.26, G:0.20, T:0.33
Consensus pattern (45 bp):
CCAATGCCATGTCTTGATATGGTCTTACACGGGATCCTTGCAATA
Found at i:86395836 original size:45 final size:45
Alignment explanation
Indices: 86395775--86395890 Score: 214
Period size: 45 Copynumber: 2.6 Consensus size: 45
86395765 ATCAATGCCG
86395775 ATGCCATGTCTTGATATGGTCTTACACGGGATCCTTGCCTTACCA
1 ATGCCATGTCTTGATATGGTCTTACACGGGATCCTTGCCTTACCA
86395820 ATGCCATGTCTTGATATGGTCTTACACGGGATCCTTGCCTTACCA
1 ATGCCATGTCTTGATATGGTCTTACACGGGATCCTTGCCTTACCA
* *
86395865 ATGCCTTGTCTTGACATGGTCTTACA
1 ATGCCATGTCTTGATATGGTCTTACA
86395891 TGGTACCCTT
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
45 69 1.00
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.34
Consensus pattern (45 bp):
ATGCCATGTCTTGATATGGTCTTACACGGGATCCTTGCCTTACCA
Found at i:86396564 original size:31 final size:30
Alignment explanation
Indices: 86396529--86396586 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
86396519 GTAACTCAAA
86396529 CTTTGGAAAAATTATAAATTTGCCCCTAAAC
1 CTTT-GAAAAATTATAAATTTGCCCCTAAAC
* * * *
86396560 CTTTGTAGAATTATGATTTTGCCCCTA
1 CTTTGAAAAATTATAAATTTGCCCCTA
86396587 GGCTCAGAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
30 19 0.83
31 4 0.17
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.38
Consensus pattern (30 bp):
CTTTGAAAAATTATAAATTTGCCCCTAAAC
Found at i:86407399 original size:106 final size:106
Alignment explanation
Indices: 86407214--86407427 Score: 365
Period size: 106 Copynumber: 2.0 Consensus size: 106
86407204 GAAATGGTAG
* * *
86407214 TTGTAACACCCCTTGCTCGAATCCCTCGTCGGAACAGGGTTCGAAGTGTTACCCGACTTAAACTC
1 TTGTAACACCCCTCGCCCGAATCCCTCGTCGGAACAGGGTTCGAAGTGTTACCCGACATAAACTC
86407279 AGTCAAACACACAAAAACCGTACCAAAAAATTTCAATCAAT
66 AGTCAAACACACAAAAACCGTACCAAAAAATTTCAATCAAT
*
86407320 TTGTAACACCCCTCGCCCGAATCCCTCGTCGGAACAGGGTTCGAGGTGTTACCCGACATAAACTC
1 TTGTAACACCCCTCGCCCGAATCCCTCGTCGGAACAGGGTTCGAAGTGTTACCCGACATAAACTC
* * *
86407385 AGTCAATCACACAAAAACCGTGCCGAAAAATTTCAATCAAT
66 AGTCAAACACACAAAAACCGTACCAAAAAATTTCAATCAAT
86407426 TT
1 TT
86407428 AAAACTTTTC
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
106 101 1.00
ACGTcount: A:0.33, C:0.29, G:0.15, T:0.22
Consensus pattern (106 bp):
TTGTAACACCCCTCGCCCGAATCCCTCGTCGGAACAGGGTTCGAAGTGTTACCCGACATAAACTC
AGTCAAACACACAAAAACCGTACCAAAAAATTTCAATCAAT
Found at i:86409978 original size:79 final size:82
Alignment explanation
Indices: 86409867--86410051 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
86409857 GCTACTCGTT
* * *
86409867 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
86409930 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
86409947 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
86410010 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
86410027 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
86410052 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:86410051 original size:40 final size:40
Alignment explanation
Indices: 86409848--86410051 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
86409838 CGGAATTTAA
** *
86409848 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
86409888 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
86409928 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
86409967 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
86410007 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
86410047 CCGGA
1 CCGGA
86410052 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:86417861 original size:79 final size:81
Alignment explanation
Indices: 86417759--86417943 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
86417749 GCTCCTCGTT
* *
86417759 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
86417822 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
86417839 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
86417903 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
86417919 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
86417944 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:86417943 original size:40 final size:40
Alignment explanation
Indices: 86417759--86417943 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
86417749 GCTCCTCGTT
* *
86417759 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
86417799 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
86417839 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
86417878 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
86417919 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
86417944 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 80 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:86419668 original size:45 final size:45
Alignment explanation
Indices: 86419595--86419996 Score: 515
Period size: 45 Copynumber: 9.2 Consensus size: 45
86419585 GGCCTGATAT
** *
86419595 CATTTCACCGGCATTATAGCCTATTAGGCTCGAAA-GCCCGAATAG
1 CATTTCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAA
* * *
86419640 TATCTCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAA
1 CATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAA
* * * * *
86419685 TATCTCACCAGCATTATAGCCTACTAGGCTCAAAGGTCCGAATAA
1 CATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAA
* *
86419730 CATTTCACCGGCTTTATAGCCTACTAGGCTCAAAGGCCCGAATAA
1 CATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAA
*
86419775 CATTTCACCGACATTATAG-C--CTA----C-----CCCGAATAA
1 CATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAA
*
86419808 CATTTCACCGGCATTATAGCCTGCTAGGTTCAAAGGCCCGAATAA
1 CATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAA
*
86419853 CATTTCACCGGCATTATAGCCTGCTAGGCTGAAAGGCCCGAATAA
1 CATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAA
* *
86419898 TATTTCACCGGCATTATAGCCTGCTAGGCTCAAAAGCCCGAATAA
1 CATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAA
** *
86419943 CATTTCACTAGCATTATAGCCTGCCAGGCTCAAAGGCCCGAATAA
1 CATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAA
86419988 CATTTCACC
1 CATTTCACC
86419997 AGTTCTTTCC
Statistics
Matches: 315, Mismatches: 29, Indels: 26
0.85 0.08 0.07
Matches are distributed among these distances:
33 27 0.09
34 1 0.00
36 3 0.01
38 1 0.00
40 1 0.00
42 3 0.01
44 4 0.01
45 275 0.87
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (45 bp):
CATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAA
Found at i:86419808 original size:33 final size:33
Alignment explanation
Indices: 86419766--86419829 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
86419756 GGCTCAAAGG
86419766 CCCGAATAACATTTCACCGACATTATAGCCTAC
1 CCCGAATAACATTTCACCGACATTATAGCCTAC
*
86419799 CCCGAATAACATTTCACCGGCATTATAGCCT
1 CCCGAATAACATTTCACCGACATTATAGCCT
86419830 GCTAGGTTCA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.31, C:0.33, G:0.11, T:0.25
Consensus pattern (33 bp):
CCCGAATAACATTTCACCGACATTATAGCCTAC
Found at i:86419851 original size:78 final size:80
Alignment explanation
Indices: 86419722--86419964 Score: 303
Period size: 78 Copynumber: 2.9 Consensus size: 80
86419712 GCTCAAAGGT
* *
86419722 CCGAATAACATTTCACCGGCTTTATAGCCTACTAGGCTCAAAGGCCCGAATAACATTTCACCGAC
1 CCGAATAACATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATTTCACCGAC
86419787 ATTATAGCCTA-C-C
66 ATTATAGCCTAGCAC
* *
86419800 CCGAATAACATTTCACCGGCATTATAGCCTGCTAGGTTCAAAGGCCCGAATAACATTTCACCGGC
1 CCGAATAACATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATTTCACCGAC
86419865 ATTATAGCCTGCTAGGCTGAAAGGC
66 ATTATAG-C--CTA-GC----A--C
* * *
86419890 CCGAATAATATTTCACCGGCATTATAGCCTGCTAGGCTCAAAAGCCCGAATAACATTTCA-CTAG
1 CCGAATAACATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATTTCACCGA-
86419954 CATTATAGCCT
65 CATTATAGCCT
86419965 GCCAGGCTCA
Statistics
Matches: 143, Mismatches: 9, Indels: 17
0.85 0.05 0.10
Matches are distributed among these distances:
78 68 0.48
79 1 0.01
81 3 0.02
83 1 0.01
87 2 0.01
89 2 0.01
90 66 0.46
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (80 bp):
CCGAATAACATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATTTCACCGAC
ATTATAGCCTAGCAC
Found at i:86419909 original size:168 final size:168
Alignment explanation
Indices: 86419644--86419964 Score: 509
Period size: 168 Copynumber: 1.9 Consensus size: 168
86419634 GAATAGTATC
* *
86419644 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATCTCACCAGCATTATAGCCTAC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATCTCACCAGCATTATAGCCTAC
* * *
86419709 TAGGCTCAAAGGTCCGAATAACATTTCACCGGCTTTATAGCCTACTAGGCTCAAAGGCCCGAATA
66 TAGGCTCAAAGGCCCGAATAACATTTCACCGGCATTATAGCCTACTAGGCTCAAAAGCCCGAATA
86419774 ACATTTCACCGA-CATTATAGCCTACCCCGAATAACATT
131 ACATTTCA-CGAGCATTATAGCCTACCCCGAATAACATT
* * * *
86419812 TCACCGGCATTATAGCCTGCTAGGTTCAAAGGCCCGAATAACATTTCACCGGCATTATAGCCTGC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATCTCACCAGCATTATAGCCTAC
* * *
86419877 TAGGCTGAAAGGCCCGAATAATATTTCACCGGCATTATAGCCTGCTAGGCTCAAAAGCCCGAATA
66 TAGGCTCAAAGGCCCGAATAACATTTCACCGGCATTATAGCCTACTAGGCTCAAAAGCCCGAATA
*
86419942 ACATTTCACTAGCATTATAGCCT
131 ACATTTCACGAGCATTATAGCCT
86419965 GCCAGGCTCA
Statistics
Matches: 139, Mismatches: 13, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
167 2 0.01
168 137 0.99
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (168 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATCTCACCAGCATTATAGCCTAC
TAGGCTCAAAGGCCCGAATAACATTTCACCGGCATTATAGCCTACTAGGCTCAAAAGCCCGAATA
ACATTTCACGAGCATTATAGCCTACCCCGAATAACATT
Found at i:86419962 original size:213 final size:213
Alignment explanation
Indices: 86419595--86419996 Score: 626
Period size: 213 Copynumber: 1.9 Consensus size: 213
86419585 GGCCTGATAT
* ** *
86419595 CATTTCACCGGCATTATAGCCTATTAGGCTCGAAAGCCCGAATAGTATCTCACTGGCATTATAGC
1 CATTTCACCGGCATTATAGCCTACTAGGCTCGAAAGCCCGAATAACATCTCACCGGCATTATAGC
* *
86419660 CTGCTAGGCTCAAAGGCCCGAATAATATCTCACCAGCATTATAGCCTACTAGGCTCAAAGGTCCG
66 CTGCTAGGCTCAAAGGCCCGAATAATATCTCACCAGCATTATAGCCTACTAGGCTCAAAAGCCCG
* * *
86419725 AATAACATTTCACCGGCTTTATAGCCTACTAGGCTCAAAGGCCCGAATAACATTTCACCGACATT
131 AATAACATTTCACCAGCATTATAGCCTACCAGGCTCAAAGGCCCGAATAACATTTCACCGACATT
86419790 ATAGCCTACCCCGAATAA
196 ATAGCCTACCCCGAATAA
* * *
86419808 CATTTCACCGGCATTATAGCCTGCTAGGTTC-AAAGGCCCGAATAACATTTCACCGGCATTATAG
1 CATTTCACCGGCATTATAGCCTACTAGGCTCGAAA-GCCCGAATAACATCTCACCGGCATTATAG
* * * *
86419872 CCTGCTAGGCTGAAAGGCCCGAATAATATTTCACCGGCATTATAGCCTGCTAGGCTCAAAAGCCC
65 CCTGCTAGGCTCAAAGGCCCGAATAATATCTCACCAGCATTATAGCCTACTAGGCTCAAAAGCCC
* *
86419937 GAATAACATTTCACTAGCATTATAGCCTGCCAGGCTCAAAGGCCCGAATAACATTTCACC
130 GAATAACATTTCACCAGCATTATAGCCTACCAGGCTCAAAGGCCCGAATAACATTTCACC
86419997 AGTTCTTTCC
Statistics
Matches: 170, Mismatches: 18, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
212 3 0.02
213 167 0.98
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (213 bp):
CATTTCACCGGCATTATAGCCTACTAGGCTCGAAAGCCCGAATAACATCTCACCGGCATTATAGC
CTGCTAGGCTCAAAGGCCCGAATAATATCTCACCAGCATTATAGCCTACTAGGCTCAAAAGCCCG
AATAACATTTCACCAGCATTATAGCCTACCAGGCTCAAAGGCCCGAATAACATTTCACCGACATT
ATAGCCTACCCCGAATAA
Found at i:86436300 original size:17 final size:17
Alignment explanation
Indices: 86436280--86436314 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
86436270 TCGAGTATTA
86436280 ATCTCTTTCGATTTCTT
1 ATCTCTTTCGATTTCTT
*
86436297 ATCTCTTTTGATTTCTT
1 ATCTCTTTCGATTTCTT
86436314 A
1 A
86436315 GTTAAGGACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.14, C:0.20, G:0.06, T:0.60
Consensus pattern (17 bp):
ATCTCTTTCGATTTCTT
Found at i:86449483 original size:457 final size:457
Alignment explanation
Indices: 86448629--86449537 Score: 1649
Period size: 457 Copynumber: 2.0 Consensus size: 457
86448619 CCCTAGGGTG
* *
86448629 TTAATTAGAGAAATGTCTCAATTATTCAATCTAGGGATTAGACGTTATTAGTCTTGAATAGGGAT
1 TTAATTAGAGAAAAGTCTCAATTATTCAATCTAGGGATTAGACATTATTAGTCTTGAATAGGGAT
** *
86448694 AATAACATAACTTAGGGATCTCTGCGGAACAAGTTAAATGAATAAATCGTCTGATTCGGAGCCAG
66 AATAACATAACTTAGGGATCTCTGCGGAACAAGTTAAATGAATAAATCGTCCAATTCAGAGCCAG
86448759 AATAACAAATACAGTCTAGGTGGATTTTTCCTTAGGTATTGTCTTAATTCAATTAATTTTCCCAA
131 AATAACAAATACAGTCTAGGTGGATTTTTCCTTAGGTATTGTCTTAATTCAATTAATTTTCCCAA
86448824 AAGCAATTCCCCAATTCCATTCTCTGTGAATTCTTAGTTTAGATAATTAGTTAGTTAAAACAAGA
196 AAGCAATTCCCCAATTCCATTCTCTGTGAATTCTTAGTTTAGATAATTAGTTAGTTAAAACAAGA
86448889 ACCTCTTTATTCTTAGGCTAGATAATAAAAAGACAGTCATTACTAGTACTTTTAGTTCCCTTGGG
261 ACCTCTTTATTCTTAGGCTAGATAATAAAAAGACAGTCATTACTAGTACTTTTAGTTCCCTTGGG
* *
86448954 TTCGATAATCCAGTCTTGCTAAAACTATACTACTATTTGATAGGTACACTTGCCTACATCGCGAT
326 TTCGACAATCCAGTATTGCTAAAACTATACTACTATTTGATAGGTACACTTGCCTACATCGCGAT
86449019 AATAGTTAGTTTCAAGAACGATTAATTATAATTATTTAAAACATATCACGAAATCACGCGATCAG
391 AATAGTTAGTTTCAAGAACGATTAATTATAATTATTTAAAACATATCACGAAATCACGCGATCAG
86449084 TA
456 TA
*
86449086 TTAATTAGAGAAAAGTCTCAATTATTCAATCTAGGGATTGGACATTATTAGTCTTGAATAGGGAT
1 TTAATTAGAGAAAAGTCTCAATTATTCAATCTAGGGATTAGACATTATTAGTCTTGAATAGGGAT
*
86449151 AATAACATAACTTAGGGATCTCTGCGGAACAAGTTAAATGAATAAATCGTCCAATTCAGAGCTAG
66 AATAACATAACTTAGGGATCTCTGCGGAACAAGTTAAATGAATAAATCGTCCAATTCAGAGCCAG
* * *
86449216 AATACCAAGTACAGTCTAGGTGGATTTTTCCTTAGGTATTGTCTTAATTCAATTGATTTTCCCAA
131 AATAACAAATACAGTCTAGGTGGATTTTTCCTTAGGTATTGTCTTAATTCAATTAATTTTCCCAA
*
86449281 AAGTAATTCCCCAATTCCATTCTCTGTGAATTCTTAGTTTAGATAATTAGTTAGTTAAAACAAGA
196 AAGCAATTCCCCAATTCCATTCTCTGTGAATTCTTAGTTTAGATAATTAGTTAGTTAAAACAAGA
86449346 ACCTCTTTATTCTTAGGCTAGATAATAAAAAGACAGTCATTACTAGTACTTTTAGTTCCCTTGGG
261 ACCTCTTTATTCTTAGGCTAGATAATAAAAAGACAGTCATTACTAGTACTTTTAGTTCCCTTGGG
* *
86449411 TTCGACAATCCGGTATTGCTAAAACTATACTACT-TTTCGATAGGTACACTTGCCTACATTGCGA
326 TTCGACAATCCAGTATTGCTAAAACTATACTACTATTT-GATAGGTACACTTGCCTACATCGCGA
* *
86449475 TAATAGTTAGTTTCAAGAATGATTAATTATAATTATTTAAAACCTATCACGAAATCACGCGAT
390 TAATAGTTAGTTTCAAGAACGATTAATTATAATTATTTAAAACATATCACGAAATCACGCGAT
86449538 TAAGTTTTTG
Statistics
Matches: 434, Mismatches: 17, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
456 3 0.01
457 431 0.99
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.34
Consensus pattern (457 bp):
TTAATTAGAGAAAAGTCTCAATTATTCAATCTAGGGATTAGACATTATTAGTCTTGAATAGGGAT
AATAACATAACTTAGGGATCTCTGCGGAACAAGTTAAATGAATAAATCGTCCAATTCAGAGCCAG
AATAACAAATACAGTCTAGGTGGATTTTTCCTTAGGTATTGTCTTAATTCAATTAATTTTCCCAA
AAGCAATTCCCCAATTCCATTCTCTGTGAATTCTTAGTTTAGATAATTAGTTAGTTAAAACAAGA
ACCTCTTTATTCTTAGGCTAGATAATAAAAAGACAGTCATTACTAGTACTTTTAGTTCCCTTGGG
TTCGACAATCCAGTATTGCTAAAACTATACTACTATTTGATAGGTACACTTGCCTACATCGCGAT
AATAGTTAGTTTCAAGAACGATTAATTATAATTATTTAAAACATATCACGAAATCACGCGATCAG
TA
Found at i:86456102 original size:457 final size:457
Alignment explanation
Indices: 86455363--86456273 Score: 1642
Period size: 457 Copynumber: 2.0 Consensus size: 457
86455353 CCCTAGGGTG
*
86455363 TTAATTAGAGAAAGGTCTCAATTATTCAATCTAGGGATTGGACATTATTAGTCTTGAATAGGGAT
1 TTAATTAGAGAAAAGTCTCAATTATTCAATCTAGGGATTGGACATTATTAGTCTTGAATAGGGAT
*
86455428 AATAACATAACTTAGGGATCTCTACGGAACAAGTTAAATGAACAAATCGTCCAATTCAGAGCTAG
66 AATAACATAACTTAGGGATCTCTACAGAACAAGTTAAATGAACAAATCGTCCAATTCAGAGCTAG
86455493 AATACCAAGTACAGTCTAGGTGGATTTTTCCTTAGGTATTGTCTTAATTCAATTGATTTTCCCAA
131 AATACCAAGTACAGTCTAGGTGGATTTTTCCTTAGGTATTGTCTTAATTCAATTGATTTTCCCAA
* * *
86455558 AAGTAATTCCCCAATTCCATTCTCTGTGAATTCTTAGTTTAGATAATTAGTTAGTTAAAACAAGA
196 AAGCAATTCCCCAATTCCATTCTCTATGAATTCTTAGTTTAGATAATTAGTTAGTTAAAACAAAA
86455623 ACCTCTTTATTCTTAGGCTAGATAATAAAAAGACAGTCATTACTAGTACTTTTAGTTCCCTTGGG
261 ACCTCTTTATTCTTAGGCTAGATAATAAAAAGACAGTCATTACTAGTACTTTTAGTTCCCTTGGG
* * *
86455688 TTCGATAATCCGGTCTTTCTAAAACTATACTATTATTCGATAGGTACACTTGCCTACATCGCGAT
326 TTCGATAATCCAGTCTTGCTAAAACTATACTACTATTCGATAGGTACACTTGCCTACATCGCGAT
*
86455753 AATAGTTAGTTTCAAGAACGATTAATTATAATTATTTAAAACATATCACGAAATCACGCGATCAG
391 AATAGTTAGTTTCAAGAACGATTAATTATAAATATTTAAAACATATCACGAAATCACGCGATCAG
86455818 TA
456 TA
86455820 TTAATTAGAGAAAAGTCTCAATTATTCAATCTAGGGATTGGACATTATTAGTCTTGAATAGGGAT
1 TTAATTAGAGAAAAGTCTCAATTATTCAATCTAGGGATTGGACATTATTAGTCTTGAATAGGGAT
* * * **
86455885 AATAACATAACTTAGGGATCTCTACAGAACAAGTTGAATGAAGAAATCGTCTAATTTGGAGCTAG
66 AATAACATAACTTAGGGATCTCTACAGAACAAGTTAAATGAACAAATCGTCCAATTCAGAGCTAG
86455950 AATACCAAGTACAGTCTAGGTGGATTTTTCCTTAGGTATTGTCTTAATTCAATTGATTTTCCCAA
131 AATACCAAGTACAGTCTAGGTGGATTTTTCCTTAGGTATTGTCTTAATTCAATTGATTTTCCCAA
* **
86456015 AAGCAATTCCCCAATTCCATTCTCTATGAATTCTTTGTTTAGATAATTAGTTTTTTAAAACAAAA
196 AAGCAATTCCCCAATTCCATTCTCTATGAATTCTTAGTTTAGATAATTAGTTAGTTAAAACAAAA
86456080 ACCTCTTTATTCTTAGGCTAGATAATAAAAAGACAGTCATTACTAGTACTTTTAGTTCCCTTGGG
261 ACCTCTTTATTCTTAGGCTAGATAATAAAAAGACAGTCATTACTAGTACTTTTAGTTCCCTTGGG
*
86456145 TTCGATAATCCAGTCTTGCTAAAACTATACTACTATTTGATAGGTACACTTGCCTACATCGCGAT
326 TTCGATAATCCAGTCTTGCTAAAACTATACTACTATTCGATAGGTACACTTGCCTACATCGCGAT
* *
86456210 AATAGTTAGTTTCAAGAATGATTAATTATAAATATTTAAAACCTATCACGAAATCACGCGATCA
391 AATAGTTAGTTTCAAGAACGATTAATTATAAATATTTAAAACATATCACGAAATCACGCGATCA
86456274 ATCATCACCT
Statistics
Matches: 434, Mismatches: 20, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
457 434 1.00
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.34
Consensus pattern (457 bp):
TTAATTAGAGAAAAGTCTCAATTATTCAATCTAGGGATTGGACATTATTAGTCTTGAATAGGGAT
AATAACATAACTTAGGGATCTCTACAGAACAAGTTAAATGAACAAATCGTCCAATTCAGAGCTAG
AATACCAAGTACAGTCTAGGTGGATTTTTCCTTAGGTATTGTCTTAATTCAATTGATTTTCCCAA
AAGCAATTCCCCAATTCCATTCTCTATGAATTCTTAGTTTAGATAATTAGTTAGTTAAAACAAAA
ACCTCTTTATTCTTAGGCTAGATAATAAAAAGACAGTCATTACTAGTACTTTTAGTTCCCTTGGG
TTCGATAATCCAGTCTTGCTAAAACTATACTACTATTCGATAGGTACACTTGCCTACATCGCGAT
AATAGTTAGTTTCAAGAACGATTAATTATAAATATTTAAAACATATCACGAAATCACGCGATCAG
TA
Found at i:86459600 original size:46 final size:46
Alignment explanation
Indices: 86459432--86459602 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 46
86459422 GTTGAGCATT
* * *
86459432 CGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCC
* * * *
86459478 CGAACTCGTTGAGTTGAGTCCAAGTTC-GTGA--GATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC--C
*
86459525 CAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCC
*
86459571 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
86459603 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 2 0.02
46 57 0.56
47 26 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCC
Found at i:86476755 original size:39 final size:40
Alignment explanation
Indices: 86476684--86476827 Score: 156
Period size: 39 Copynumber: 3.6 Consensus size: 40
86476674 GCTACTCGTT
* *
86476684 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
*
86476724 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
86476763 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
86476804 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
86476828 CATCATTCAA
Statistics
Matches: 90, Mismatches: 8, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
38 2 0.02
39 47 0.52
40 33 0.37
41 8 0.09
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:86487328 original size:38 final size:38
Alignment explanation
Indices: 86487277--86487352 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
86487267 CTTGACTGGG
*
86487277 GAAAGAATAAGGTTTACGAGGTTTAGGCTCAATTTCTA
1 GAAAGAACAAGGTTTACGAGGTTTAGGCTCAATTTCTA
*
86487315 GAAAGAACAAGGTTTACGAGGTTTAGGCTCGATTTCTA
1 GAAAGAACAAGGTTTACGAGGTTTAGGCTCAATTTCTA
86487353 TTATTTTGTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (38 bp):
GAAAGAACAAGGTTTACGAGGTTTAGGCTCAATTTCTA
Found at i:86489140 original size:23 final size:23
Alignment explanation
Indices: 86489113--86489172 Score: 111
Period size: 23 Copynumber: 2.6 Consensus size: 23
86489103 TGTCCCCAAG
86489113 CACACGGGCGTGTGCATTGCCTC
1 CACACGGGCGTGTGCATTGCCTC
*
86489136 CACACAGGCGTGTGCATTGCCTC
1 CACACGGGCGTGTGCATTGCCTC
86489159 CACACGGGCGTGTG
1 CACACGGGCGTGTG
86489173 AGGATTTAAC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.15, C:0.33, G:0.32, T:0.20
Consensus pattern (23 bp):
CACACGGGCGTGTGCATTGCCTC
Found at i:86494961 original size:28 final size:28
Alignment explanation
Indices: 86494898--86494995 Score: 128
Period size: 27 Copynumber: 3.5 Consensus size: 28
86494888 ATATTAAGTC
*
86494898 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
86494925 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
86494953 CGCACACTTAGTGCTGA-ACAATTTAAACC
1 CGCACACTTAGTGCT-ATATAA-TCAAACT
86494982 CGCACACTTAGTGC
1 CGCACACTTAGTGC
86494996 CAATCTCATG
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
27 22 0.34
28 22 0.34
29 20 0.31
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:86500893 original size:45 final size:45
Alignment explanation
Indices: 86500818--86500903 Score: 104
Period size: 45 Copynumber: 1.9 Consensus size: 45
86500808 AAAAAATAAA
* * **
86500818 ATAAAATAAATTTTAAAATTCAAAATTATATTTTTTTAAAAAATT
1 ATAAAATAAATTTAAAAATTCAAAAATATATGATTTTAAAAAATT
86500863 ATAAAA-AAATTTAAAAA-TCTAAAGAATATATGATTTTAAAA
1 ATAAAATAAATTTAAAAATTC-AAA-AATATATGATTTTAAAA
86500904 TAAAAAACTA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
43 2 0.06
44 13 0.37
45 20 0.57
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.38
Consensus pattern (45 bp):
ATAAAATAAATTTAAAAATTCAAAAATATATGATTTTAAAAAATT
Found at i:86503606 original size:20 final size:21
Alignment explanation
Indices: 86503581--86503638 Score: 77
Period size: 20 Copynumber: 2.9 Consensus size: 21
86503571 TTTAAAAATT
86503581 AATAATTTTTATACTTTTT-A
1 AATAATTTTTATACTTTTTAA
*
86503601 AATAATTTTTA-ATTTTTTAA
1 AATAATTTTTATACTTTTTAA
*
86503621 AATGA-TTTTATACTTTTT
1 AATAATTTTTATACTTTTT
86503639 TTATTTTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 11 0.33
20 22 0.67
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.60
Consensus pattern (21 bp):
AATAATTTTTATACTTTTTAA
Found at i:86523814 original size:38 final size:38
Alignment explanation
Indices: 86523763--86523838 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
86523753 TTCATCCTTT
*
86523763 TTCATTTCTTTTGGCCGACAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
86523801 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
86523839 GGAGTTCTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
Found at i:86525121 original size:40 final size:40
Alignment explanation
Indices: 86525027--86525171 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
86525017 TACTCGAATG
*
86525027 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
86525068 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * * *
86525108 ATATCCGGGCTAAGTCCCGGAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
86525148 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
86525172 CTTGTGCGAG
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 60 0.67
41 28 0.31
42 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:86528291 original size:43 final size:42
Alignment explanation
Indices: 86528136--86528292 Score: 133
Period size: 43 Copynumber: 3.7 Consensus size: 42
86528126 TGTGTTTTCG
* *
86528136 TGTAAGACCAGATCTGGGACGTTGGCATCA-ATTTATGATTTACG
1 TGTAAGACCAGGTCTGGGACGTTGGCATCATA-TT-TGA-TTACA
* * * * * *
86528180 TGTAAGACCATGCCTAGGACATCGAG-ATCATATTTGATTTCA
1 TGTAAGACCAGGTCTGGGACGTTG-GCATCATATTTGATTACA
**
86528222 TGTAAGACCCTGTCTAGGAGA-G-TGGCATCGATATTTGATTACA
1 TGTAAGACCAGGTCT-GG-GACGTTGGCATC-ATATTTGATTACA
86528265 TGTAAGACCAGGTCTGGGACGTTGGCAT
1 TGTAAGACCAGGTCTGGGACGTTGGCAT
86528293 TGTACGAGCA
Statistics
Matches: 89, Mismatches: 16, Indels: 17
0.73 0.13 0.14
Matches are distributed among these distances:
41 3 0.03
42 23 0.26
43 35 0.39
44 26 0.29
45 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30
Consensus pattern (42 bp):
TGTAAGACCAGGTCTGGGACGTTGGCATCATATTTGATTACA
Found at i:86545891 original size:28 final size:28
Alignment explanation
Indices: 86545859--86545923 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
86545849 ATTTACTAGA
*
86545859 ATACCCCTATGTATGCAAAATTACCAT-T
1 ATACCCCTATGTATGCAAAATAACC-TCT
86545887 ATACCCCTATGTATGCAAAATAACCTCT
1 ATACCCCTATGTATGCAAAATAACCTCT
86545915 ATACCCCTA
1 ATACCCCTA
86545924 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.35, C:0.29, G:0.06, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATAACCTCT
Found at i:86549185 original size:55 final size:55
Alignment explanation
Indices: 86549079--86549194 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 55
86549069 ACATTTTGTT
* *
86549079 ACACGGTCTAGCATATGACTTGTAACACGACCGTGTGACCCAACTTCGAATA-TAC
1 ACACGGTCTAGCATATGACCTGTAACACGACCATGTGACCCAACTTCGAATACT-C
* * * * * *
86549134 ACACGGTCTAGC-TCATGGCCTGTGACACGACCATGTGGCCCTATTTGGAATACTC
1 ACACGGTCTAGCAT-ATGACCTGTAACACGACCATGTGACCCAACTTCGAATACTC
86549189 ACACGG
1 ACACGG
86549195 GCAGACACAC
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
54 1 0.02
55 49 0.96
56 1 0.02
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (55 bp):
ACACGGTCTAGCATATGACCTGTAACACGACCATGTGACCCAACTTCGAATACTC
Found at i:86557441 original size:37 final size:37
Alignment explanation
Indices: 86557390--86557465 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
86557380 ATGATCGATG
*
86557390 TTGTTGTGATTAGCCAAATG-TAT-TGGCTTATAATGAT
1 TTGTTGTGATTAGCC--ATGAGATGTGGCTTATAATGAT
86557427 TTGTTGT-ATGTAGCCATGAGATGTGGCTTATAATGAT
1 TTGTTGTGAT-TAGCCATGAGATGTGGCTTATAATGAT
86557464 TT
1 TT
86557466 TGGCTTGTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
35 3 0.09
36 4 0.11
37 28 0.80
ACGTcount: A:0.25, C:0.08, G:0.24, T:0.43
Consensus pattern (37 bp):
TTGTTGTGATTAGCCATGAGATGTGGCTTATAATGAT
Found at i:86559893 original size:40 final size:40
Alignment explanation
Indices: 86559793--86560057 Score: 286
Period size: 40 Copynumber: 6.7 Consensus size: 40
86559783 GCTCCTCGTT
* * * *
86559793 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
86559833 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
86559872 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
86559912 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
86559952 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
86559992 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
86560033 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
86560058 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
39 39 0.20
40 143 0.73
41 15 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:86560017 original size:80 final size:80
Alignment explanation
Indices: 86559760--86560057 Score: 263
Period size: 80 Copynumber: 3.7 Consensus size: 80
86559750 AAATCACGTA
* ** * * *
86559760 CCTTCGGGATTTAA-CCGGATATAGCTC-CTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTTT
1 CCTTCGGGACTTAACCCGGATATAG-TCACTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
86559822 AGTAACTCACAC-AATG
64 AATAACTCGCACAAATG
* * * *
86559838 CCTTCGGGACATAACCCGGATTTA-ACAACTCGCACGAATGCCTTCGGGACTTAACCCGG-ATTT
1 CCTTCGGGACTTAACCCGGATATAGTC-ACTCGCAC-AAAGCCTTCGGGACTTAACCCGGAATTT
*
86559901 AATAACTCGCACGAATG
64 AATAACTCGCACAAATG
* *
86559918 CCTTCGGGACTTAACCCGGATTTAGT-ATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT
1 CCTTCGGGACTTAACCCGGATATAGTCA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
86559982 -GTATCTCGCACAAATG
64 AATAACTCGCACAAATG
** * * *
86559998 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTAACCCGGATATAGTCAC-TCGCACAAAGCCTTCGGGACTTAACCCGGA
86560058 CAGCATTCAA
Statistics
Matches: 182, Mismatches: 26, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
77 1 0.01
78 12 0.07
79 50 0.27
80 106 0.58
81 13 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGTCACTCGCACAAAGCCTTCGGGACTTAACCCGGAATTTAA
TAACTCGCACAAATG
Found at i:86560066 original size:41 final size:41
Alignment explanation
Indices: 86559989--86560066 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
86559979 TTTGTATCTC
* * *
86559989 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
86560030 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
86560067 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:86567890 original size:40 final size:40
Alignment explanation
Indices: 86567783--86567952 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
86567773 TCCTCGTTCA
* * * *
86567783 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACA-T
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
* *
86567822 AATGCCTTCGGGACATAATCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
* *
86567862 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
* * * * *
86567902 AATGCCTTCAGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
86567942 AAGGCCTTCGG
1 AATGCCTTCGG
86567953 ATCTTAGTCC
Statistics
Matches: 113, Mismatches: 17, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 33 0.29
40 80 0.71
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
Found at i:86567965 original size:40 final size:40
Alignment explanation
Indices: 86567781--86568005 Score: 206
Period size: 40 Copynumber: 5.7 Consensus size: 40
86567771 GCTCCTCGTT
* * *
86567781 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACT--CA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* * *
86567819 CATAATGCCTTCGGGACATAATCCGGATTTAACAACTCGCA
1 CA-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* *
86567860 CGAATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* * * *
86567900 CGAATGCCTTCAGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* ** * * ** *
86567940 CAAAGGCCTTC-GGATCTTAGTCCGGATATATTTGCTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCA
*
86567981 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
86568006 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
38 2 0.01
39 33 0.21
40 109 0.69
41 14 0.09
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
Found at i:86578279 original size:50 final size:50
Alignment explanation
Indices: 86578201--86578301 Score: 184
Period size: 50 Copynumber: 2.0 Consensus size: 50
86578191 TGATTCAGAG
86578201 TTAGGTATTATCCAAATCATTCAATTTTCCCAAAAGTTACTTCCCCAATT
1 TTAGGTATTATCCAAATCATTCAATTTTCCCAAAAGTTACTTCCCCAATT
* *
86578251 TTAGGTATTATCCAAATCATTCAGTTTTCCCAAAAGTTATTTCCCCAATT
1 TTAGGTATTATCCAAATCATTCAATTTTCCCAAAAGTTACTTCCCCAATT
86578301 T
1 T
86578302 ACTTCCTGTA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.40
Consensus pattern (50 bp):
TTAGGTATTATCCAAATCATTCAATTTTCCCAAAAGTTACTTCCCCAATT
Found at i:86583659 original size:25 final size:26
Alignment explanation
Indices: 86583624--86583681 Score: 77
Period size: 25 Copynumber: 2.3 Consensus size: 26
86583614 CACTTTTATC
86583624 TTTA-TTTATCTTC-TTTAAGTACT-T
1 TTTATTTTATCTTCATTTAA-TACTAT
86583648 TTTATTTTATCTTCATTTAATACTAT
1 TTTATTTTATCTTCATTTAATACTAT
*
86583674 TTCATTTT
1 TTTATTTT
86583682 TAGGTTTTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 4 0.13
25 13 0.43
26 13 0.43
ACGTcount: A:0.22, C:0.12, G:0.02, T:0.64
Consensus pattern (26 bp):
TTTATTTTATCTTCATTTAATACTAT
Found at i:86587471 original size:46 final size:45
Alignment explanation
Indices: 86587415--86587725 Score: 178
Period size: 46 Copynumber: 6.5 Consensus size: 45
86587405 TATGCGCGCT
86587415 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAATATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCACAATATGAGAGCC
* * * *
86587461 AGTGTAAGACATTTTTGGGACATGCATCGGCCTCGAGATATTTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCAC-A-ATA-TGAGAGCC
* * ** * * *
86587509 AGTGTAAGACATGTCTAGGACATGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGCCA-CAATATGAGAGCC
* * * * *
86587555 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGCGATA-CACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATC-G-C-CACAATATGA-GAGCC
* * *
86587603 AGTGTAAGA-ACTATCTGGGACATGTCATCGACACTGATAGATGAGAGCC
1 AGTGTAAGACA-TGTCTGGGACATG-CATCGCCAC--A-ATATGAGAGCC
* * * * * * *
86587652 AGTGTAAGGCCTATCTTGGACATGGGATCGGCCTCACTATATGAAAGCC
1 AGTGTAAGACATGTCTGGGACAT-GCATC-G-C-CACAATATGAGAGCC
*
86587701 AGAGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
86587726 GCGTTGGCAT
Statistics
Matches: 200, Mismatches: 44, Indels: 39
0.71 0.16 0.14
Matches are distributed among these distances:
45 1 0.00
46 64 0.32
47 6 0.03
48 61 0.31
49 51 0.25
50 14 0.07
52 3 0.01
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGCCACAATATGAGAGCC
Found at i:86587518 original size:48 final size:46
Alignment explanation
Indices: 86587415--86587725 Score: 211
Period size: 48 Copynumber: 6.5 Consensus size: 46
86587405 TATGCGCGCT
* *
86587415 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-A-ATATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAT-A-AGCC
* *
86587461 AGTGTAAGACATTTTTGGGACATGCATCGGCCTCGAGATATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATA--TAAGCC
* * * * * *
86587509 AGTGTAAGACATGTCTAGGACATGCATCGGCATTGAGACGA-GAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGA-TATAAGCC
* * *
86587555 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGCGATACACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAT--ATAAGCC
* * * *
86587603 AGTGTAAGA-ACTATCTGGGACATGTCATCGACACT-GATAGATGAGAGCC
1 AGTGTAAGACA-TGTCTGGGACATG-CATCGGC-CTCGAGATAT-A-AGCC
* * * * * *
86587652 AGTGTAAGGCCTATCTTGGACATGGGATCGGCCTC-ACTATATGAAAGCC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGA-GATAT--AAGCC
*
86587701 AGAGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
86587726 GCGTTGGCAT
Statistics
Matches: 209, Mismatches: 37, Indels: 35
0.74 0.13 0.12
Matches are distributed among these distances:
46 67 0.32
47 4 0.02
48 69 0.33
49 53 0.25
50 16 0.08
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAGCC
Found at i:86587564 original size:94 final size:94
Alignment explanation
Indices: 86587415--86587725 Score: 261
Period size: 94 Copynumber: 3.3 Consensus size: 94
86587405 TATGCGCGCT
* * * * *
86587415 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAATATGAGAGCCAGTGTAAGACATTTTTGGG
1 AGTGTAAGACATGTCTAGGACATGCATCAGCCACAAGACGAGAGCCAGTGTAAGACATGTCTGGG
86587480 ACATGCATCGGCCTCGAGATATTTAAGCC
66 ACATGCATCGGCCTCGAGATATTTAAGCC
* ** *
86587509 AGTGTAAGACATGTCTAGGACATGCATC-GGCATTGAGACGAGAGCTAGTGTAAGACATGTCTGG
1 AGTGTAAGACATGTCTAGGACATGCATCAGCCA-CAAGACGAGAGCCAGTGTAAGACATGTCTGG
* *** *
86587573 GACATGCATCGGCCTCGCGATACACAAGCT
65 GACATGCATCGGCCTCGAGATATTTAAGCC
* * * * * * *
86587603 AGTGTAAGA-ACTATCTGGGACATGTCATC-GACACTGATAGATGAGAGCCAGTGTAAGGCCTAT
1 AGTGTAAGACA-TGTCTAGGACATG-CATCAGCCAC--A-AGACGAGAGCCAGTGTAAGACATGT
* * * **
86587666 CTTGGACATGGGATCGGCCTC-ACTATATGAAAGCC
61 CTGGGACAT-GCATCGGCCTCGA-GATATTTAAGCC
* *
86587701 AGAGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTAGGACATG
86587726 GCGTTGGCAT
Statistics
Matches: 173, Mismatches: 34, Indels: 15
0.78 0.15 0.07
Matches are distributed among these distances:
93 4 0.02
94 96 0.55
95 7 0.04
97 28 0.16
98 25 0.14
99 12 0.07
100 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (94 bp):
AGTGTAAGACATGTCTAGGACATGCATCAGCCACAAGACGAGAGCCAGTGTAAGACATGTCTGGG
ACATGCATCGGCCTCGAGATATTTAAGCC
Found at i:86589700 original size:46 final size:46
Alignment explanation
Indices: 86589633--86589804 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
86589623 AACCCGCCCC
* * *
86589633 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
86589679 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * * *
86589727 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
86589772 TAGGTGAACTCAGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGG
86589805 ATGCTCAACC
Statistics
Matches: 103, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 1 0.01
46 57 0.55
47 27 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:86589766 original size:93 final size:93
Alignment explanation
Indices: 86589638--86589808 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
86589628 GCCCCTAAGT
* * *
86589638 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
86589703 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
86589731 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
86589796 CGAGTTCGGATGC
66 CGAGTTCGGATGC
86589809 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:86590262 original size:30 final size:30
Alignment explanation
Indices: 86590228--86590287 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
86590218 ATTTAATACG
86590228 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
86590258 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
86590288 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:86597241 original size:63 final size:63
Alignment explanation
Indices: 86597162--86597281 Score: 204
Period size: 63 Copynumber: 1.9 Consensus size: 63
86597152 CAAATTTATA
*
86597162 TGAAATTTGATAGATTAATAGTTAAATTTACCCATATAGATCCGAAAAGACCAACCACTGACC
1 TGAAATGTGATAGATTAATAGTTAAATTTACCCATATAGATCCGAAAAGACCAACCACTGACC
* * *
86597225 TGAAATGTGATAGATTACTAGTTAAATTTACCCATATAGATCCGGAAATACCAACCA
1 TGAAATGTGATAGATTAATAGTTAAATTTACCCATATAGATCCGAAAAGACCAACCA
86597282 TGGAACTAGA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
63 53 1.00
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (63 bp):
TGAAATGTGATAGATTAATAGTTAAATTTACCCATATAGATCCGAAAAGACCAACCACTGACC
Found at i:86599535 original size:39 final size:38
Alignment explanation
Indices: 86599492--86599620 Score: 195
Period size: 39 Copynumber: 3.3 Consensus size: 38
86599482 CTTTAACCCG
* ** *
86599492 GATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGTCC
1 GATATATTTCCAGCATATAGCCTGCGGACCTCATGTCC
86599530 AGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCC
1 -GATATATTTCCAGCATATAGCCTGCGGACCTCATGTCC
86599569 GGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCC
1 -GATATATTTCCAGCATATAGCCTGCGGACCTCATGTCC
86599608 GAATATATTTCCA
1 G-ATATATTTCCA
86599621 ATCTCATATA
Statistics
Matches: 84, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
38 1 0.01
39 83 0.99
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.29
Consensus pattern (38 bp):
GATATATTTCCAGCATATAGCCTGCGGACCTCATGTCC
Found at i:86600301 original size:11 final size:11
Alignment explanation
Indices: 86600285--86600310 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
86600275 ACAATTTAAC
86600285 TATATAATATA
1 TATATAATATA
86600296 TATATAATATA
1 TATATAATATA
86600307 TATA
1 TATA
86600311 ACCGAATGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (11 bp):
TATATAATATA
Found at i:86604457 original size:19 final size:19
Alignment explanation
Indices: 86604433--86604471 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
86604423 TTTCAATTCC
86604433 TTCAATTCCATTGGTGCCA
1 TTCAATTCCATTGGTGCCA
86604452 TTCAATTCCATTGGTGCCA
1 TTCAATTCCATTGGTGCCA
86604471 T
1 T
86604472 ACGGTACGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.21, C:0.26, G:0.15, T:0.38
Consensus pattern (19 bp):
TTCAATTCCATTGGTGCCA
Found at i:86607404 original size:39 final size:39
Alignment explanation
Indices: 86607361--86607492 Score: 210
Period size: 39 Copynumber: 3.4 Consensus size: 39
86607351 AGTCTTTAAC
* ** *
86607361 CCGGATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
86607400 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
* *
86607439 CCTGATATATTTCCAGCATATAGCCTGTGGACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
86607478 CCGGATATATTTCCA
1 CCGGATATATTTCCA
86607493 ATCTCATATA
Statistics
Matches: 86, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 86 1.00
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.30
Consensus pattern (39 bp):
CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
Found at i:86608657 original size:20 final size:20
Alignment explanation
Indices: 86608632--86608673 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
86608622 ACATCAAATC
* *
86608632 TATATATATATAGCTTTATA
1 TATATACATATAGATTTATA
*
86608652 TATATACATATATATTTATA
1 TATATACATATAGATTTATA
86608672 TA
1 TA
86608674 GCTCATCAAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.43, C:0.05, G:0.02, T:0.50
Consensus pattern (20 bp):
TATATACATATAGATTTATA
Found at i:86611136 original size:27 final size:27
Alignment explanation
Indices: 86611106--86611157 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
86611096 GTTCCTTTTC
* * * *
86611106 GGAGTTAGCCATGAATGCTTCCATTAT
1 GGAGATAGCCACGAAGGATTCCATTAT
86611133 GGAGATAGCCACGAAGGATTCCATT
1 GGAGATAGCCACGAAGGATTCCATT
86611158 CATTTACACC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (27 bp):
GGAGATAGCCACGAAGGATTCCATTAT
Found at i:86632817 original size:27 final size:27
Alignment explanation
Indices: 86632787--86632863 Score: 102
Period size: 27 Copynumber: 2.9 Consensus size: 27
86632777 TTCATTTTTG
*
86632787 TAGATCGCCACAAAAGCTTCCTTATCA
1 TAGATCGCCACAAAGGCTTCCTTATCA
**
86632814 TAGATTTCCACAAAGGCTTCCTTATCA
1 TAGATCGCCACAAAGGCTTCCTTATCA
*
86632841 TAGA-CTGCCATAAAGGCTTCCTT
1 TAGATC-GCCACAAAGGCTTCCTT
86632864 TTTCTAGCGT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.30
Consensus pattern (27 bp):
TAGATCGCCACAAAGGCTTCCTTATCA
Found at i:86635359 original size:28 final size:27
Alignment explanation
Indices: 86635314--86635368 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
86635304 GAACAGCTTG
*
86635314 CTAAGGAGATAGGAGCCCTAACCATCCA
1 CTAAGGAGATAGAAGCCC-AACCATCCA
*
86635342 CTAAGGAGA-AGAACGCCCAACCGTCCA
1 CTAAGGAGATAGAA-GCCCAACCATCCA
86635369 TAAAGGTGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 11 0.46
28 13 0.54
ACGTcount: A:0.36, C:0.31, G:0.22, T:0.11
Consensus pattern (27 bp):
CTAAGGAGATAGAAGCCCAACCATCCA
Found at i:86638924 original size:12 final size:12
Alignment explanation
Indices: 86638907--86638934 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
86638897 TTACAAGCAA
86638907 AAATAAATAAAC
1 AAATAAATAAAC
86638919 AAATAAATAAAC
1 AAATAAATAAAC
86638931 AAAT
1 AAAT
86638935 GAATGGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.75, C:0.07, G:0.00, T:0.18
Consensus pattern (12 bp):
AAATAAATAAAC
Found at i:86645449 original size:22 final size:22
Alignment explanation
Indices: 86645424--86645465 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
86645414 ACTATGCAAT
86645424 CTGAGCTCATGAGT-TATGTGGC
1 CTGAGCTCATGA-TATATGTGGC
86645446 CTGAGCTCATGATATATGTG
1 CTGAGCTCATGATATATGTG
86645466 ACACATGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 1 0.05
22 18 0.95
ACGTcount: A:0.21, C:0.17, G:0.29, T:0.33
Consensus pattern (22 bp):
CTGAGCTCATGATATATGTGGC
Found at i:86655971 original size:61 final size:61
Alignment explanation
Indices: 86655902--86656024 Score: 228
Period size: 61 Copynumber: 2.0 Consensus size: 61
86655892 ACTTCTTGAC
86655902 CTCTCGATCCAAAATCTTAATCGGTTCTTCACTATAGATCATATCCAAACTTAAATTTCTT
1 CTCTCGATCCAAAATCTTAATCGGTTCTTCACTATAGATCATATCCAAACTTAAATTTCTT
* *
86655963 CTCTCGATCCAAAATCTTAATCGGTTCTTCACTATAGATCATATCCAGACTTCAATTTCTT
1 CTCTCGATCCAAAATCTTAATCGGTTCTTCACTATAGATCATATCCAAACTTAAATTTCTT
86656024 C
1 C
86656025 CGGTGAAATC
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.29, C:0.26, G:0.07, T:0.37
Consensus pattern (61 bp):
CTCTCGATCCAAAATCTTAATCGGTTCTTCACTATAGATCATATCCAAACTTAAATTTCTT
Found at i:86657224 original size:10 final size:10
Alignment explanation
Indices: 86657197--86657256 Score: 70
Period size: 10 Copynumber: 6.0 Consensus size: 10
86657187 TGAAATTCTA
86657197 AAAGATAAAT
1 AAAGATAAAT
*
86657207 ACAA-ATAATT
1 A-AAGATAAAT
*
86657217 AACGATAAAT
1 AAAGATAAAT
86657227 AAAGATAAAT
1 AAAGATAAAT
86657237 AAAGATAAAT
1 AAAGATAAAT
86657247 GAAA-ATAAAT
1 -AAAGATAAAT
86657257 CCTAAAATTA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
9 1 0.02
10 37 0.86
11 5 0.12
ACGTcount: A:0.67, C:0.03, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:86664430 original size:29 final size:30
Alignment explanation
Indices: 86664379--86664489 Score: 97
Period size: 30 Copynumber: 3.8 Consensus size: 30
86664369 CTGCGTTCCT
* *
86664379 GAAAAATAAAAAAATA-AAATTAAGAATCTG
1 GAAAAAT-AAAAAATAGAATTTAAGAATCTA
* *
86664409 GAAAAAT-AAAAATAGAATTTAA-ACGTTCTT
1 GAAAAATAAAAAATAGAATTTAAGA--ATCTA
*
86664439 GAAAAGTAAAAAATAGAA-TTAAGAATCTA
1 GAAAAATAAAAAATAGAATTTAAGAATCTA
* *
86664468 GAAAACT-AAAAACAGAATTTAA
1 GAAAAATAAAAAATAGAATTTAA
86664490 AGTGAATTAA
Statistics
Matches: 67, Mismatches: 8, Indels: 13
0.76 0.09 0.15
Matches are distributed among these distances:
28 17 0.25
29 19 0.28
30 20 0.30
31 11 0.16
ACGTcount: A:0.61, C:0.05, G:0.11, T:0.23
Consensus pattern (30 bp):
GAAAAATAAAAAATAGAATTTAAGAATCTA
Found at i:86664464 original size:59 final size:60
Alignment explanation
Indices: 86664372--86664490 Score: 177
Period size: 59 Copynumber: 2.0 Consensus size: 60
86664362 AGAAAACCTG
* *
86664372 CGTTCCTGAAAAATAAAAAAATAAAATTAAGAATCTGGAAAAATAAAAATAGAATTTAAA
1 CGTTCCTGAAAAATAAAAAAATAAAATTAAGAATCTAGAAAAATAAAAACAGAATTTAAA
* * * *
86664432 CGTTCTTGAAAAGT-AAAAAATAGAATTAAGAATCTAGAAAACTAAAAACAGAATTTAAA
1 CGTTCCTGAAAAATAAAAAAATAAAATTAAGAATCTAGAAAAATAAAAACAGAATTTAAA
86664491 GTGAATTAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
59 41 0.77
60 12 0.23
ACGTcount: A:0.58, C:0.08, G:0.11, T:0.24
Consensus pattern (60 bp):
CGTTCCTGAAAAATAAAAAAATAAAATTAAGAATCTAGAAAAATAAAAACAGAATTTAAA
Found at i:86665296 original size:10 final size:10
Alignment explanation
Indices: 86665248--86665307 Score: 61
Period size: 10 Copynumber: 6.0 Consensus size: 10
86665238 TGAAATTCTA
*
86665248 AAAGACAAAT
1 AAAGATAAAT
*
86665258 ACAA-ATAATT
1 A-AAGATAAAT
*
86665268 AAAGATAATT
1 AAAGATAAAT
86665278 AAAGATAAAT
1 AAAGATAAAT
86665288 AAAGATAAAT
1 AAAGATAAAT
86665298 GAAA-ATAAAT
1 -AAAGATAAAT
86665308 CCTAAAATTA
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
9 2 0.05
10 37 0.84
11 5 0.11
ACGTcount: A:0.67, C:0.03, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:86672979 original size:93 final size:93
Alignment explanation
Indices: 86672849--86673572 Score: 1430
Period size: 93 Copynumber: 7.8 Consensus size: 93
86672839 ATGTGAATGT
86672849 GTTTTTGGTGATGCCATTTGGATTAACTAATGCCTCGGCGGTATTTATGGATTTAATGAATAGAA
1 GTTTTTGGTGATGCCATTTGGATTAACTAATGCCTCGGCGGTATTTATGGATTTAATGAATAGAA
86672914 TTTTCAGAACCAAATATGGGCACTATGA
66 TTTTCAGAACCAAATATGGGCACTATGA
86672942 GTTTTTGGTGATGCCATTTGGATTAACTAATGCCTCGGCGGTATTTATGGATTTAATGAATAGAA
1 GTTTTTGGTGATGCCATTTGGATTAACTAATGCCTCGGCGGTATTTATGGATTTAATGAATAGAA
86673007 TTTTCAGAACCAAATATGGGCACTATGA
66 TTTTCAGAACCAAATATGGGCACTATGA
86673035 GTTTTTGGTGATGCCATTTGGATTAACTAATGCCTCGGCGGTATTTATGGATTTAATGAATAGAA
1 GTTTTTGGTGATGCCATTTGGATTAACTAATGCCTCGGCGGTATTTATGGATTTAATGAATAGAA
86673100 TTTTCAGAACCAAATATGGGCACTATGA
66 TTTTCAGAACCAAATATGGGCACTATGA
86673128 GTTTTTGGTGATGCCATTTGGATTAACTAATGCCTCGGCGGTATTTATGGATTTAATGAATAGAA
1 GTTTTTGGTGATGCCATTTGGATTAACTAATGCCTCGGCGGTATTTATGGATTTAATGAATAGAA
86673193 TTTTCAGAACCAAATATGGGCACTATGA
66 TTTTCAGAACCAAATATGGGCACTATGA
86673221 GTTTTTGGTGATGCCATTTGGATTAACTAATGCCTCGGCGGTATTTATGGATTTAATGAATAGAA
1 GTTTTTGGTGATGCCATTTGGATTAACTAATGCCTCGGCGGTATTTATGGATTTAATGAATAGAA
86673286 TTTTCAGAACCAAATATGGGCACTATGA
66 TTTTCAGAACCAAATATGGGCACTATGA
86673314 GTTTTTGGTGATGCCATTTGGATTAACTAATGCCTCGGCGGTATTTATGGATTTAATGAATAGAA
1 GTTTTTGGTGATGCCATTTGGATTAACTAATGCCTCGGCGGTATTTATGGATTTAATGAATAGAA
86673379 TTTTCAGAACCAAATATGGGCACTATGA
66 TTTTCAGAACCAAATATGGGCACTATGA
86673407 GTTTTTGGTGATGCCATTTGGATTAACTAATGCCTCGGCGGTATTTATGGATTTAATGAATAGAA
1 GTTTTTGGTGATGCCATTTGGATTAACTAATGCCTCGGCGGTATTTATGGATTTAATGAATAGAA
86673472 TTTTCAGAACCAAATATGGGCACTATGA
66 TTTTCAGAACCAAATATGGGCACTATGA
* *
86673500 GTTTTTGGTGATGCCATTTCGATTAACTAATGCCTCGGCGGTATTTGTGGATTTAATGAATAGAA
1 GTTTTTGGTGATGCCATTTGGATTAACTAATGCCTCGGCGGTATTTATGGATTTAATGAATAGAA
86673565 TTTTCAGA
66 TTTTCAGA
86673573 CCATACCTGG
Statistics
Matches: 629, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
93 629 1.00
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.36
Consensus pattern (93 bp):
GTTTTTGGTGATGCCATTTGGATTAACTAATGCCTCGGCGGTATTTATGGATTTAATGAATAGAA
TTTTCAGAACCAAATATGGGCACTATGA
Found at i:86683086 original size:33 final size:33
Alignment explanation
Indices: 86683049--86683115 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
86683039 GTTGTAAGAG
86683049 TTGACAGACAGGGGTTTTACTCAACCCAGTTTT
1 TTGACAGACAGGGGTTTTACTCAACCCAGTTTT
* *
86683082 TTGACAGGCAGGGGTTTTACTCAACCCGGTTTT
1 TTGACAGACAGGGGTTTTACTCAACCCAGTTTT
86683115 T
1 T
86683116 CTCATTGGGG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.21, C:0.21, G:0.24, T:0.34
Consensus pattern (33 bp):
TTGACAGACAGGGGTTTTACTCAACCCAGTTTT
Found at i:86686956 original size:19 final size:19
Alignment explanation
Indices: 86686929--86687037 Score: 55
Period size: 19 Copynumber: 5.5 Consensus size: 19
86686919 TATACATTGA
86686929 ATTGCACTTACATGCCCCT
1 ATTGCACTTACATGCCCCT
* *
86686948 ATTGTACTT-CGATACCCCT
1 ATTGCACTTAC-ATGCCCCT
86686967 AAATTGCACTTA-AGTGCCCCT
1 --ATTGCACTTACA-TGCCCCT
* * * *
86686988 GTTGTACTT-CGGTACCCCT
1 ATTGCACTTAC-ATGCCCCT
86687007 AAATTGCACTTATC-TGCCCCT
1 --ATTGCACTTA-CATGCCCCT
86687028 ATTTGCACTT
1 A-TTGCACTT
86687038 TGATACCCCT
Statistics
Matches: 67, Mismatches: 11, Indels: 23
0.66 0.11 0.23
Matches are distributed among these distances:
18 1 0.01
19 29 0.43
20 9 0.13
21 27 0.40
23 1 0.01
ACGTcount: A:0.21, C:0.31, G:0.13, T:0.35
Consensus pattern (19 bp):
ATTGCACTTACATGCCCCT
Found at i:86686977 original size:21 final size:20
Alignment explanation
Indices: 86686928--86687056 Score: 68
Period size: 21 Copynumber: 6.4 Consensus size: 20
86686918 TTATACATTG
*
86686928 AATTGCACTTAC-ATGCCCCT
1 AATTGCACTT-CGATACCCCT
*
86686948 -ATTGTACTTCGATACCCCT
1 AATTGCACTTCGATACCCCT
* *
86686967 AAATTGCACTT-AAGTGCCCCT
1 -AATTGCACTTCGA-TACCCCT
* * *
86686988 -GTTGTACTTCGGTACCCCT
1 AATTGCACTTCGATACCCCT
*** *
86687007 AAATTGCACTTATCTGCCCCT
1 -AATTGCACTTCGATACCCCT
* *
86687028 ATTTGCACTTTGATACCCCT
1 AATTGCACTTCGATACCCCT
86687048 GAATTGCAC
1 -AATTGCAC
86687057 ATAGTGCCCC
Statistics
Matches: 79, Mismatches: 22, Indels: 15
0.68 0.19 0.13
Matches are distributed among these distances:
18 1 0.01
19 28 0.35
20 16 0.20
21 34 0.43
ACGTcount: A:0.22, C:0.31, G:0.13, T:0.33
Consensus pattern (20 bp):
AATTGCACTTCGATACCCCT
Found at i:86686985 original size:40 final size:40
Alignment explanation
Indices: 86686928--86687070 Score: 182
Period size: 40 Copynumber: 3.6 Consensus size: 40
86686918 TTATACATTG
86686928 AATTGCACTTACA-TGCCCCTATTGTACTTCGATACCCCTA
1 AATTGCACTTA-AGTGCCCCTATTGTACTTCGATACCCCTA
* *
86686968 AATTGCACTTAAGTGCCCCTGTTGTACTTCGGTACCCCTA
1 AATTGCACTTAAGTGCCCCTATTGTACTTCGATACCCCTA
** * * *
86687008 AATTGCACTTATCTGCCCCTATTTGCACTTTGATACCCCTG
1 AATTGCACTTAAGTGCCCCTA-TTGTACTTCGATACCCCTA
*
86687049 AATTGCACAT-AGTGCCCCTATT
1 AATTGCACTTAAGTGCCCCTATT
86687071 TACACTGATA
Statistics
Matches: 89, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.03
40 62 0.70
41 24 0.27
ACGTcount: A:0.22, C:0.31, G:0.13, T:0.34
Consensus pattern (40 bp):
AATTGCACTTAAGTGCCCCTATTGTACTTCGATACCCCTA
Found at i:86690379 original size:201 final size:201
Alignment explanation
Indices: 86690034--86690429 Score: 648
Period size: 201 Copynumber: 2.0 Consensus size: 201
86690024 TAAATGATGT
*
86690034 TTTATTAACATGGATCACTAATAAAGTCAGATTTTCCGACCATATAAACGAAGATCCCATAGCAT
1 TTTATTAACATGGATCACTAATAAAGTCAGATTTGCCGACCATATAAACGAAGATCCCATAGCAT
* * * *
86690099 TTTTTAGAAATTTGACCATATATGCAGCACTGTTAGCTACGCAAGTATTCCACGGAGACTATCAA
66 TTTTCAGAAATTTGACCATATATGCAGCACTGTTAGCTACACAAGGATTCCACAGAGACTATCAA
* * *
86690164 ATTATTATTGATTCCATTTGCGTTAGAGGGGAAAGCAATTATGTGGTTAAAGAAACTTCTTCCAA
131 ATTATTATTGATTCCATTTACGTTAGAGGGGAAAGCAAATATGTGGTTAAAGAAACTTCCTCCAA
86690229 ACATCA
196 ACATCA
* * *
86690235 TTTATTAACATGGATCACTAATAAAGTTAGATTTGCTGACCATATAAATGAAGATCCCATAGCAT
1 TTTATTAACATGGATCACTAATAAAGTCAGATTTGCCGACCATATAAACGAAGATCCCATAGCAT
86690300 TTTTCAGAAATTTGACCATATATGCAGCACTGTTAGCTACACAAGGATTCCACAGAGACTATCAA
66 TTTTCAGAAATTTGACCATATATGCAGCACTGTTAGCTACACAAGGATTCCACAGAGACTATCAA
* * * * *
86690365 ATTATTATTGATTCCATTTATGTTAGAGGGGTAAGTAAATATGTGGTTAGAGACACTTCCTCCAA
131 ATTATTATTGATTCCATTTACGTTAGAGGGGAAAGCAAATATGTGGTTAAAGAAACTTCCTCCAA
86690430 GCACCATCAC
Statistics
Matches: 179, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
201 179 1.00
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (201 bp):
TTTATTAACATGGATCACTAATAAAGTCAGATTTGCCGACCATATAAACGAAGATCCCATAGCAT
TTTTCAGAAATTTGACCATATATGCAGCACTGTTAGCTACACAAGGATTCCACAGAGACTATCAA
ATTATTATTGATTCCATTTACGTTAGAGGGGAAAGCAAATATGTGGTTAAAGAAACTTCCTCCAA
ACATCA
Found at i:86694438 original size:78 final size:78
Alignment explanation
Indices: 86694309--86694465 Score: 305
Period size: 78 Copynumber: 2.0 Consensus size: 78
86694299 ATTACAAAAT
86694309 TGTGTAAAACTGTAGGAGTACCCATTGAGTGGATAGATAAAAAACCATGAATCTCCCAAAGAAAT
1 TGTGTAAAACTGTAGGAGTACCCATTGAGTGGATAGATAAAAAACCATGAATCTCCCAAAGAAAT
86694374 TACTCCGCGATGA
66 TACTCCGCGATGA
*
86694387 TGTGTAAAACTGTAGGAGTACCCATTGAGTGGATAGATAAAAAACCATGAATCTCCCAAGGAAAT
1 TGTGTAAAACTGTAGGAGTACCCATTGAGTGGATAGATAAAAAACCATGAATCTCCCAAAGAAAT
86694452 TACTCCGCGATGA
66 TACTCCGCGATGA
86694465 T
1 T
86694466 TTATTCAAGC
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
78 78 1.00
ACGTcount: A:0.38, C:0.18, G:0.21, T:0.24
Consensus pattern (78 bp):
TGTGTAAAACTGTAGGAGTACCCATTGAGTGGATAGATAAAAAACCATGAATCTCCCAAAGAAAT
TACTCCGCGATGA
Found at i:86719629 original size:14 final size:14
Alignment explanation
Indices: 86719610--86719646 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
86719600 AAATATTTAA
86719610 CAATTTGATTGAAT
1 CAATTTGATTGAAT
86719624 CAATTTGATTGAAT
1 CAATTTGATTGAAT
*
86719638 AAATTTGAT
1 CAATTTGAT
86719647 ACTTTCAGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.38, C:0.05, G:0.14, T:0.43
Consensus pattern (14 bp):
CAATTTGATTGAAT
Found at i:86720596 original size:33 final size:34
Alignment explanation
Indices: 86720491--86720623 Score: 182
Period size: 34 Copynumber: 3.9 Consensus size: 34
86720481 TTTTAAAAAA
* * *
86720491 TAAATCAGGGTTTAGGACTTTTTAAAAAATAAAT
1 TAAATTAGGGTTTAGGAATTTTTTAAAAATAAAT
* *
86720525 TAAATTAGGATTTAGGATTTTTTTAAAAGAATAAAT
1 TAAATTAGGGTTTAGGAATTTTTT-AAA-AATAAAT
86720561 TAAATTAGGGTTTA-GAATTTTTTAAAAATAAAT
1 TAAATTAGGGTTTAGGAATTTTTTAAAAATAAAT
86720594 TAAATTAGGGTTTAGG--TTTTTTAAAAATAA
1 TAAATTAGGGTTTAGGAATTTTTTAAAAATAA
86720624 TTTTATGTTT
Statistics
Matches: 90, Mismatches: 6, Indels: 8
0.87 0.06 0.08
Matches are distributed among these distances:
32 14 0.16
33 21 0.23
34 24 0.27
35 11 0.12
36 20 0.22
ACGTcount: A:0.44, C:0.02, G:0.14, T:0.41
Consensus pattern (34 bp):
TAAATTAGGGTTTAGGAATTTTTTAAAAATAAAT
Found at i:86720602 original size:69 final size:69
Alignment explanation
Indices: 86720491--86720620 Score: 199
Period size: 69 Copynumber: 1.9 Consensus size: 69
86720481 TTTTAAAAAA
* *
86720491 TAAATCAGGGTTTAGGACTTTTTAAAAAATAAATTAAATTAGGATTTAGGATTTTTTTAAAAGAA
1 TAAATCAGGGTTTAGGAATTTTTAAAAAATAAATTAAATTAGGATTTAGG-TTTTTTAAAAAGAA
86720556 TAAAT
65 TAAAT
* * *
86720561 TAAATTAGGGTTTA-GAATTTTTTAAAAATAAATTAAATTAGGGTTTAGGTTTTTTAAAAA
1 TAAATCAGGGTTTAGGAATTTTTAAAAAATAAATTAAATTAGGATTTAGGTTTTTTAAAAA
86720621 TAATTTTATG
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
68 10 0.18
69 32 0.58
70 13 0.24
ACGTcount: A:0.43, C:0.02, G:0.15, T:0.41
Consensus pattern (69 bp):
TAAATCAGGGTTTAGGAATTTTTAAAAAATAAATTAAATTAGGATTTAGGTTTTTTAAAAAGAAT
AAAT
Found at i:86721034 original size:125 final size:126
Alignment explanation
Indices: 86720721--86721227 Score: 657
Period size: 125 Copynumber: 4.1 Consensus size: 126
86720711 TTTTATCCAG
* * ** *
86720721 TAGTTTCTGAAAAAATAATTTTGAG-AGACAGTTCTGAAAAAATAATGTCAAAAGCGCTTCAAGG
1 TAGTTTCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAAATGCTTCAAGC
* * *
86720785 AGAATGCACTATCAGCAAAAGTACTGAAAAAAAGCTCCCACTTGGATGCTCTTTTTCTACAG
66 AGAATGCACTATCAGCAAAAGTACT-AAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAA
* *
86720847 TAGTTTCTGAAAAAAATAATTTTGAGAAGACGGTTTTGAAAAAATAGTGTCAAAAATACTTCAAG
1 TAGTTTCTG-AAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAAATGCTTCAAG
* * *
86720912 CAGGATGCACTACCAGCAAAAGTACTAAAAAAAGCTCCCGCGTGGACGCTCTTTTTCTACAA
65 CAGAATGCACTATCAGCAAAAGTACTAAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAA
* * * *
86720974 TAGTTTCTG-AAAAATAATTTTGAGAAGATGGTTCTGAAAAAATGGTGCCAAAATTGCTTCAAGC
1 TAGTTTCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAAATGCTTCAAGC
* * * * * * *
86721038 AGGATGTACTATCAGCAAAAGTATTGAAAAAAGCTCCCACGTTGATGCTCTTTTTCTACAG
66 AGAATGCACTATCAGCAAAAGTACTAAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAA
* * * * * *
86721099 TAGTTTTTG-AAAAATAATTTTGAGAAAACGATTCTAAAAAAATA--GTAAAAAATGCTTCAATC
1 TAGTTTCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAAATGCTTCAAGC
* * *
86721161 AGAATGCACTATCAGCAAAAGTACTAAAAAAAGCTTCCACGTGGACGCTCTTTCTCTAAAA
66 AGAATGCACTATCAGCAAAAGTACTAAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAA
86721222 TA-TTTC
1 TAGTTTC
86721228 CTGCTTGGCC
Statistics
Matches: 331, Mismatches: 48, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
122 3 0.01
123 67 0.20
125 140 0.42
126 9 0.03
127 57 0.17
128 55 0.17
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (126 bp):
TAGTTTCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAAATGCTTCAAGC
AGAATGCACTATCAGCAAAAGTACTAAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAA
Found at i:86723798 original size:40 final size:40
Alignment explanation
Indices: 86723731--86723907 Score: 198
Period size: 40 Copynumber: 4.5 Consensus size: 40
86723721 ACTCAATTAT
*
86723731 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
86723770 CTTCGGGTCTTAGCCCGGATATAGCAACTGGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * * *
86723810 CTTCGGGTCTTAGCCCAGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * * *
86723850 CTTCGGGACATAGCCCGGATATAGAAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
86723890 CTTTGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
86723908 TTATCATCCG
Statistics
Matches: 115, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 12 0.10
40 100 0.87
41 2 0.02
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:86728281 original size:18 final size:18
Alignment explanation
Indices: 86728255--86728297 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
86728245 GACTGGGAAA
* * *
86728255 AGGAAACATATAGGGGTT
1 AGGATACATATAAGGGCT
86728273 AGGATACATATAAGGGCT
1 AGGATACATATAAGGGCT
86728291 AGGATAC
1 AGGATAC
86728298 GCACCTGGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.40, C:0.09, G:0.30, T:0.21
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:86728894 original size:7 final size:7
Alignment explanation
Indices: 86728884--86728926 Score: 68
Period size: 7 Copynumber: 6.0 Consensus size: 7
86728874 TTATATACAT
86728884 AATACTA
1 AATACTA
86728891 AATACTA
1 AATACTA
86728898 AATACTA
1 AATACTA
86728905 AATACTA
1 AATACTA
*
86728912 AATACGA
1 AATACTA
86728919 AATGACTA
1 AAT-ACTA
86728927 TGTTATGTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
7 30 0.91
8 3 0.09
ACGTcount: A:0.56, C:0.14, G:0.05, T:0.26
Consensus pattern (7 bp):
AATACTA
Found at i:86729864 original size:24 final size:24
Alignment explanation
Indices: 86729834--86729890 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
86729824 ACTTTGATAA
86729834 AAAAATTATA-AAAT-AAAAATTAAT
1 AAAAATTATATAAATGAAAAA--AAT
*
86729858 AAAAATTACATAAATGAAAAAAAT
1 AAAAATTATATAAATGAAAAAAAT
*
86729882 AAATATTAT
1 AAAAATTAT
86729891 TCAAAAATTG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
24 19 0.68
25 4 0.14
26 5 0.18
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (24 bp):
AAAAATTATATAAATGAAAAAAAT
Found at i:86744193 original size:37 final size:37
Alignment explanation
Indices: 86744143--86744221 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
86744133 TTATTACGAA
* * *
86744143 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
86744180 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
86744217 GTCTT
1 GTCTT
86744222 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:86744442 original size:47 final size:47
Alignment explanation
Indices: 86744391--86744786 Score: 747
Period size: 47 Copynumber: 8.4 Consensus size: 47
86744381 CTCGGCCCTG
*
86744391 TCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
86744438 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
86744485 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
86744532 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
86744579 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
86744626 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
86744673 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
*
86744720 TCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
*
86744767 TCACATATACATACACTTTC
1 TCACACAT--ATACACTTTC
86744787 TTGGCTGAAT
Statistics
Matches: 344, Mismatches: 3, Indels: 2
0.99 0.01 0.01
Matches are distributed among these distances:
47 334 0.97
49 10 0.03
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
Found at i:86750738 original size:6 final size:6
Alignment explanation
Indices: 86750721--86750755 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
86750711 TGGTGTTAAC
*
86750721 CCTGCA CTTGCA CCTGCA CCTGCA CCTGCA CCTGC
1 CCTGCA CCTGCA CCTGCA CCTGCA CCTGCA CCTGC
86750756 CAATCCTGCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.14, C:0.49, G:0.17, T:0.20
Consensus pattern (6 bp):
CCTGCA
Found at i:86756654 original size:17 final size:17
Alignment explanation
Indices: 86756619--86756655 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
86756609 GTTTTGGGTT
*
86756619 TATATAGTATTATACTA
1 TATATAGTATAATACTA
86756636 TATATAGTATAA-A-TA
1 TATATAGTATAATACTA
86756651 TATAT
1 TATAT
86756656 TTATACTTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 7 0.37
16 1 0.05
17 11 0.58
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (17 bp):
TATATAGTATAATACTA
Found at i:86762128 original size:39 final size:39
Alignment explanation
Indices: 86762083--86762447 Score: 640
Period size: 39 Copynumber: 9.2 Consensus size: 39
86762073 AAGGCCTAAT
86762083 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
86762122 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
86762161 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
86762200 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
86762239 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
86762278 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
86762317 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
86762356 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
1 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT-A-----A
* *
86762401 TTGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAG
1 --GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
86762442 GGCCGA
1 GGCCGA
86762448 GTGGCCAACG
Statistics
Matches: 316, Mismatches: 2, Indels: 16
0.95 0.01 0.05
Matches are distributed among these distances:
39 277 0.88
40 1 0.00
45 1 0.00
46 1 0.00
47 36 0.11
ACGTcount: A:0.32, C:0.06, G:0.32, T:0.30
Consensus pattern (39 bp):
GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:86762409 original size:47 final size:47
Alignment explanation
Indices: 86762356--86762489 Score: 205
Period size: 47 Copynumber: 2.9 Consensus size: 47
86762346 TATGTGATAA
*
86762356 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGATT
1 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAGT
* *
86762403 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGT
1 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAGT
* * * *
86762450 GGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
86762490 TCCCGAAGGG
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 78 1.00
ACGTcount: A:0.31, C:0.09, G:0.34, T:0.27
Consensus pattern (47 bp):
GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAGT
Found at i:86762716 original size:37 final size:37
Alignment explanation
Indices: 86762656--86762751 Score: 156
Period size: 37 Copynumber: 2.6 Consensus size: 37
86762646 AGCTCTGACG
* *
86762656 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
86762693 AAATCTCCACACGTAGTCGTCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
86762730 TAATCTCCACACGTAGTCATCG
1 AAATCTCCACACGTAGTCATCG
86762752 CGACTACGTG
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 54 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:86776425 original size:21 final size:20
Alignment explanation
Indices: 86776389--86776431 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
86776379 CAAAACCTCG
*
86776389 TTTTTAAAAATTACTTG-AC
1 TTTTTAAAAATCACTTGCAC
86776408 TTTTTAAACAAATCACTTGCAC
1 TTTTT-AA-AAATCACTTGCAC
86776430 TT
1 TT
86776432 AAACTTTAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 5 0.25
20 2 0.10
21 9 0.45
22 4 0.20
ACGTcount: A:0.35, C:0.16, G:0.05, T:0.44
Consensus pattern (20 bp):
TTTTTAAAAATCACTTGCAC
Found at i:86778160 original size:49 final size:48
Alignment explanation
Indices: 86778087--86778330 Score: 328
Period size: 49 Copynumber: 5.0 Consensus size: 48
86778077 GCTTTATCAT
* * *
86778087 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAATCCCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTA
* *
86778136 ATAATTAGGGCATAAGCCCTTTTTAATAACTGGGGCATAAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTAATAACTGGGGCATAAGCCC-TTTTA
* * * *
86778186 ATAACTGGAGCATAAGCCCTTTTGATAACTGAGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
*
86778234 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
* *
86778282 ATAACTGGGGCGTAAGCCCTTTTTAATAACTAGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTAATAACTGGGGCATAAGCCCTTTTA
86778331 CACTTCCTCC
Statistics
Matches: 174, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
48 72 0.41
49 81 0.47
50 21 0.12
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
Found at i:86778171 original size:25 final size:24
Alignment explanation
Indices: 86778087--86778330 Score: 328
Period size: 24 Copynumber: 10.0 Consensus size: 24
86778077 GCTTTATCAT
*
86778087 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
86778112 ATAACTGGGGCAAAATCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
86778136 ATAATTAGGGCATAAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
86778161 ATAACTGGGGCATAAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
* *
86778186 ATAACTGGAGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
86778210 ATAACTGAGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
86778234 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
86778258 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
86778282 ATAACTGGGGCGTAAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
*
86778307 ATAACTAGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
86778331 CACTTCCTCC
Statistics
Matches: 196, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
24 118 0.60
25 78 0.40
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:86778424 original size:20 final size:18
Alignment explanation
Indices: 86778379--86778434 Score: 85
Period size: 19 Copynumber: 2.9 Consensus size: 18
86778369 TTATGAATAC
86778379 ATCATGTGCATATCATCAT
1 ATCATGTGCATATCAT-AT
86778398 ATCATGTGCATATCATAT
1 ATCATGTGCATATCATAT
86778416 ATGTCATGTGCATATCATA
1 A--TCATGTGCATATCATA
86778435 CATACCATGT
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
18 3 0.09
19 16 0.46
20 16 0.46
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (18 bp):
ATCATGTGCATATCATAT
Found at i:86778443 original size:20 final size:20
Alignment explanation
Indices: 86778379--86778444 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
86778369 TTATGAATAC
86778379 ATCATGTGCATATCAT-CAT
1 ATCATGTGCATATCATACAT
*
86778398 ATCATGTGCATATCATATAT
1 ATCATGTGCATATCATACAT
*
86778418 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
86778438 ACCATGT
1 ATCATGT
86778445 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
19 16 0.39
20 25 0.61
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:86778523 original size:25 final size:25
Alignment explanation
Indices: 86778481--86778528 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
86778471 ATATTTAAAC
* * *
86778481 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
86778506 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
86778529 CATTTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:86779663 original size:27 final size:27
Alignment explanation
Indices: 86779625--86779682 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
86779615 TACCATACAG
86779625 TTACGGTCACTTTACCCTACAAGGGCT
1 TTACGGTCACTTTACCCTACAAGGGCT
* *
86779652 TTACGGTCACTTTACCCTATAGGGGCT
1 TTACGGTCACTTTACCCTACAAGGGCT
86779679 TTAC
1 TTAC
86779683 AGTCTTTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.21, C:0.28, G:0.19, T:0.33
Consensus pattern (27 bp):
TTACGGTCACTTTACCCTACAAGGGCT
Found at i:86779692 original size:27 final size:27
Alignment explanation
Indices: 86779625--86779703 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
86779615 TACCATACAG
* * *
86779625 TTACGGTCACTTTACCCTACAAGGGCT
1 TTACAGTCACTTTACCCTATAGGGGCT
*
86779652 TTACGGTCACTTTACCCTATAGGGGCT
1 TTACAGTCACTTTACCCTATAGGGGCT
**
86779679 TTACAGTCTTTTTA-CCTAATAGGGG
1 TTACAGTCACTTTACCCT-ATAGGGG
86779704 TATTTTAGTC
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 3 0.07
27 43 0.93
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (27 bp):
TTACAGTCACTTTACCCTATAGGGGCT
Found at i:86779778 original size:27 final size:27
Alignment explanation
Indices: 86779748--86779799 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
86779738 GTAAATCTAC
86779748 AAACCAAAGGTATTTC-AGTAATTTTGT
1 AAACCAAAGGTATTTCTA-TAATTTTGT
*
86779775 AAACCAATGGTATTTCTATAATTTT
1 AAACCAAAGGTATTTCTATAATTTT
86779800 TAGAAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.40
Consensus pattern (27 bp):
AAACCAAAGGTATTTCTATAATTTTGT
Found at i:86779851 original size:27 final size:27
Alignment explanation
Indices: 86779835--86780178 Score: 421
Period size: 27 Copynumber: 12.8 Consensus size: 27
86779825 CTTTGTAAAT
86779835 TAGGGGTATTTTGGTAATTTTACAAA-
1 TAGGGGTATTTTGGTAATTTTACAAAC
* * *
86779861 TTGAGGGTATTTCGGTAATTTCACAAAC
1 TAG-GGGTATTTTGGTAATTTTACAAAC
*
86779889 TAGTGGTATTTTGGTAATTTTACAAAC
1 TAGGGGTATTTTGGTAATTTTACAAAC
*
86779916 TAAGGGTATTTTGGTAATTTTACAAA-
1 TAGGGGTATTTTGGTAATTTTACAAAC
* * *
86779942 TTGAGGGTATTTCGGTAATTTCACAAAC
1 TAG-GGGTATTTTGGTAATTTTACAAAC
*
86779970 TAGTGGTATTTTGGTAATTTTACAAAC
1 TAGGGGTATTTTGGTAATTTTACAAAC
*
86779997 TAAGGGTATTTTGGTAATTTTACAAA-
1 TAGGGGTATTTTGGTAATTTTACAAAC
* * *
86780023 TTGAGGGTATTTCGGTAATTTCACAAAC
1 TAG-GGGTATTTTGGTAATTTTACAAAC
*
86780051 TAGTGGTATTTTGGTAATTTTACAAAC
1 TAGGGGTATTTTGGTAATTTTACAAAC
*
86780078 TAAGGGTATTTTGGTAATTTTACAAA-
1 TAGGGGTATTTTGGTAATTTTACAAAC
*
86780104 TTGAGGGTATTTCT-GTAATTTTACAAAC
1 TAG-GGGTATTT-TGGTAATTTTACAAAC
* * *
86780132 CAAGGGTATTTTAGTAATTTTACAAAC
1 TAGGGGTATTTTGGTAATTTTACAAAC
*
86780159 TA-GGGTATTTTAGTAATTTT
1 TAGGGGTATTTTGGTAATTTT
86780179 GTAAATCGAG
Statistics
Matches: 273, Mismatches: 35, Indels: 20
0.83 0.11 0.06
Matches are distributed among these distances:
26 24 0.09
27 242 0.89
28 7 0.03
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (27 bp):
TAGGGGTATTTTGGTAATTTTACAAAC
Found at i:86779897 original size:54 final size:54
Alignment explanation
Indices: 86779838--86780178 Score: 467
Period size: 54 Copynumber: 6.3 Consensus size: 54
86779828 TGTAAATTAG
* * * *
86779838 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACT-A
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAACTGA
*
86779891 GTGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAATTGA
1 G-GGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAACTGA
* * *
86779946 GGGTATTTCGGTAATTTCACAAACT-AGTGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAACTAAG-GGTATTTTGGTAATTTTACAAACTGA
* * * *
86780000 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACT-A
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAACTGA
*
86780053 GTGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAATTGA
1 G-GGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAACTGA
* *
86780108 GGGTATTTCT-GTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAACT-A
1 GGGTATTT-TGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAACTGA
*
86780161 GGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
86780179 GTAAATCGAG
Statistics
Matches: 258, Mismatches: 22, Indels: 16
0.87 0.07 0.05
Matches are distributed among these distances:
52 1 0.00
53 22 0.09
54 228 0.88
55 7 0.03
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAACTGA
Found at i:86779933 original size:81 final size:81
Alignment explanation
Indices: 86779838--86780192 Score: 615
Period size: 81 Copynumber: 4.4 Consensus size: 81
86779828 TGTAAATTAG
86779838 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACTAGTGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACTAGTGGTATTTTGG
86779903 TAATTTTACAAACTAA
66 TAATTTTACAAACTAA
86779919 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACTAGTGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACTAGTGGTATTTTGG
86779984 TAATTTTACAAACTAA
66 TAATTTTACAAACTAA
86780000 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACTAGTGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACTAGTGGTATTTTGG
86780065 TAATTTTACAAACTAA
66 TAATTTTACAAACTAA
* * * *
86780081 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCTGTAATTTTACAAACCAAG-GGTATTTTA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAA-CTAGTGGTATTTTG
86780145 GTAATTTTACAAACT-A
65 GTAATTTTACAAACTAA
* ** *
86780161 GGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTA
86780193 AAATAGTAAT
Statistics
Matches: 265, Mismatches: 8, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
80 29 0.11
81 233 0.88
82 3 0.01
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACTAGTGGTATTTTGG
TAATTTTACAAACTAA
Found at i:86780199 original size:27 final size:27
Alignment explanation
Indices: 86780171--86780381 Score: 251
Period size: 27 Copynumber: 7.8 Consensus size: 27
86780161 GGGTATTTTA
* **
86780171 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
86780198 GTAATTCTATAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
86780225 GTAATTCTATAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
** *
86780252 GTAATTCAATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
86780279 GTAATTCTGTAAGTCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * *
86780306 ATAATTATTTAAATCGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
86780333 GTAATTATGTAAATCGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
86780360 GTAATTCTGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTA
86780382 CTTTGGTAAT
Statistics
Matches: 164, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 164 1.00
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:86780408 original size:27 final size:27
Alignment explanation
Indices: 86780387--86780476 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
86780377 GGGTACTTTG
*
86780387 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
86780414 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
86780441 GTATTTTTACAAA-CTAAGGGTATTTCG
1 GTAATTTTACAAATCGAA-GGTATTTCA
86780468 GTAATTTTA
1 GTAATTTTA
86780477 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.04
27 53 0.96
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:86780428 original size:54 final size:54
Alignment explanation
Indices: 86780370--86780476 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
86780360 GTAATTCTGT
* * *
86780370 AAATCGGGGGTACTTT-GGTAATTTTACAAGTCGAA-GGTATTTCAGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCAGTAATTTTAC
* * *
86780424 AAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGGTAATTTTA
1 AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTA
86780477 GTAAACTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 6 0.13
54 39 0.87
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (54 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTAC
Found at i:86780490 original size:27 final size:27
Alignment explanation
Indices: 86780387--86780491 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
86780377 GGGTACTTTG
* *
86780387 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
86780414 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
86780441 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
86780468 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
86780492 CTAAACAGGG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 55 0.85
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Done.