Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 263 of 276
Found at i:87158744 original size:47 final size:47
Alignment explanation
Indices: 87158653--87159091 Score: 668
Period size: 47 Copynumber: 9.4 Consensus size: 47
87158643 TAATTGAATA
* *
87158653 AATGTGAA-AGTGTATATGTGTGAATAGGGCCGAATGGCCAATGTGATG
1 AATGTGAACA-TGTGTATGTGTG-ATAAGGCCGAATGGCCAATGTGATG
*
87158701 AATGTGAACATGTGTATGTGTGATAAAGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* * *
87158748 AAAGTAAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
*
87158795 AATGTGAACATGTGTATGTGTGATAAGGCCGAGTGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* * *
87158842 AAAGTAAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
*
87158889 AATGTGAACATGTGTATGTGTGATAAAGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* * *
87158936 AAAGTAAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
*
87158983 AATGTGAACATGTGTATGTGTGATAAGGCCGAGTGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
87159030 AATGTGAGCATGTGTATGTGAGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
87159077 AATGTGAA-A-GTGTAT
1 AATGTGAACATGTGTAT
87159092 AAATGTGATA
Statistics
Matches: 357, Mismatches: 33, Indels: 5
0.90 0.08 0.01
Matches are distributed among these distances:
45 6 0.02
46 1 0.00
47 330 0.92
48 19 0.05
49 1 0.00
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.27
Consensus pattern (47 bp):
AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:87161044 original size:23 final size:22
Alignment explanation
Indices: 87161018--87161070 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
87161008 TGAGAGTGAA
*
87161018 AAAAGAAATT-GAAGAAAGAAGAG
1 AAAAGAAATTAGAA-AAAGAA-AC
87161041 AAAATG-AATTAGAAAAAGAAAC
1 AAAA-GAAATTAGAAAAAGAAAC
87161063 AAAAGAAA
1 AAAAGAAA
87161071 AAGACGTGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 1 0.04
22 7 0.27
23 14 0.54
24 4 0.15
ACGTcount: A:0.70, C:0.02, G:0.19, T:0.09
Consensus pattern (22 bp):
AAAAGAAATTAGAAAAAGAAAC
Found at i:87165992 original size:49 final size:50
Alignment explanation
Indices: 87165936--87166053 Score: 166
Period size: 50 Copynumber: 2.4 Consensus size: 50
87165926 ACGCATACTA
* **
87165936 GCACTTAGTACTACACATGTGA-CAAACAATCCGGTACACGTAGTAGGTT
1 GCACTTAGTACTACACATGTGACCAAACAATCCGATACACGTAGTAGCCT
** * *
87165985 GCACTTAGTACTACACATGTGACCTCACCATCTGATACACGTAGTAGCCT
1 GCACTTAGTACTACACATGTGACCAAACAATCCGATACACGTAGTAGCCT
87166035 GCACTTAGTACTACACATG
1 GCACTTAGTACTACACATG
87166054 CGACTTAACA
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
49 22 0.36
50 39 0.64
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (50 bp):
GCACTTAGTACTACACATGTGACCAAACAATCCGATACACGTAGTAGCCT
Found at i:87173316 original size:50 final size:49
Alignment explanation
Indices: 87173199--87173440 Score: 247
Period size: 50 Copynumber: 4.9 Consensus size: 49
87173189 AGCCGAAGCT
* * * * *
87173199 ATCTGATACGCATAGTAGCCAGCACTTAGTACTACACATGTGAC-CAATA
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTC-ATC
* * *
87173248 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTTCACACGTGAGCTCACC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CTCATC
87173298 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-TCGAAGTC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTC--A-TC
* * * * * *
87173349 ATC-GAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACTTAAC
1 ATCTGA-TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTCATC
* * *
87173398 AGTGTGGTACACGTAGTAGCCTGCACTTCGTACTACACACGTG
1 A-TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTG
87173441 TATTCACAAT
Statistics
Matches: 160, Mismatches: 24, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
48 2 0.01
49 39 0.24
50 79 0.49
51 39 0.24
52 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (49 bp):
ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTCATC
Found at i:87173409 original size:101 final size:99
Alignment explanation
Indices: 87173199--87173440 Score: 290
Period size: 101 Copynumber: 2.4 Consensus size: 99
87173189 AGCCGAAGCT
* * * * *
87173199 ATCTGATACGCATAGTAGCCAGCACTTAGTACTACACATGTGACCAATAATCTGGTACACGTAGT
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATAATCTGGTACACATAGT
* * *
87173264 AGCCTGCACTTAGTACTTCACACGTGAGCTCACC
66 AGCCTGCACTTAGTACTACACACGCGAGCTCAAC
* * *
87173298 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTCATC-GAGTACGCAT
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TAATCTG-GTACACAT
* *
87173362 AGTAGCCTGCACTTAGTACTACACATGCGA-CTTAAC
63 AGTAGCCTGCACTTAGTACTACACACGCGAGCTCAAC
* * *
87173398 AGTGTGGTACACGTAGTAGCCTGCACTTCGTACTACACACGTG
1 A-TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTG
87173441 TATTCACAAT
Statistics
Matches: 123, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
99 39 0.32
100 9 0.07
101 75 0.61
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (99 bp):
ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATAATCTGGTACACATAGT
AGCCTGCACTTAGTACTACACACGCGAGCTCAAC
Found at i:87175590 original size:64 final size:64
Alignment explanation
Indices: 87175509--87175692 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
87175499 AGACATTATG
* * *
87175509 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTCCACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
87175573 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
87175638 AA
63 AA
* * * *
87175640 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
87175693 CGAACTATAT
Statistics
Matches: 97, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 21 0.22
65 8 0.08
66 16 0.16
67 30 0.31
68 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:87179242 original size:40 final size:40
Alignment explanation
Indices: 87179191--87179467 Score: 446
Period size: 40 Copynumber: 6.9 Consensus size: 40
87179181 ATAACCGCAA
* * * *
87179191 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
87179231 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
87179271 GCATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
87179311 GCACAAATGCCTTCGGGTTTTAGCCCAGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
87179351 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
87179391 GCACAAATGCCTTCGGGTTTTAGCCCAGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
87179431 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
87179468 ATGCTCATGT
Statistics
Matches: 217, Mismatches: 20, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 217 1.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:87181810 original size:86 final size:86
Alignment explanation
Indices: 87181665--87181836 Score: 326
Period size: 86 Copynumber: 2.0 Consensus size: 86
87181655 TCAAGCCAAT
* *
87181665 GTCTTTGTCGCAGATTCAAGTCTCGTTGAGTCATCAAATATTTGAGACTTTTGTGATCCGAAAAT
1 GTCTTTGTCGCAGATTCAAGTCTCGCTGAGTCATCAAATATTTGAGACTTTTATGATCCGAAAAT
87181730 ACATGGCACTTCTCACCAAAC
66 ACATGGCACTTCTCACCAAAC
87181751 GTCTTTGTCGCAGATTCAAGTCTCGCTGAGTCATCAAATATTTGAGACTTTTATGATCCGAAAAT
1 GTCTTTGTCGCAGATTCAAGTCTCGCTGAGTCATCAAATATTTGAGACTTTTATGATCCGAAAAT
87181816 ACATGGCACTTCTCACCAAAC
66 ACATGGCACTTCTCACCAAAC
87181837 AAATAATGTC
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
86 84 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (86 bp):
GTCTTTGTCGCAGATTCAAGTCTCGCTGAGTCATCAAATATTTGAGACTTTTATGATCCGAAAAT
ACATGGCACTTCTCACCAAAC
Found at i:87181982 original size:25 final size:26
Alignment explanation
Indices: 87181954--87182006 Score: 90
Period size: 25 Copynumber: 2.1 Consensus size: 26
87181944 ACCAAATAAG
*
87181954 TAATGTCGCCATATTTTTAAA-CAAA
1 TAATGTCGCCATATTTTCAAAGCAAA
87181979 TAATGTCGCCATATTTTCAAAGCAAA
1 TAATGTCGCCATATTTTCAAAGCAAA
87182005 TA
1 TA
87182007 CGATGGCAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 20 0.77
26 6 0.23
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.34
Consensus pattern (26 bp):
TAATGTCGCCATATTTTCAAAGCAAA
Found at i:87186481 original size:40 final size:40
Alignment explanation
Indices: 87186430--87186706 Score: 437
Period size: 40 Copynumber: 6.9 Consensus size: 40
87186420 ATAACCGCAA
* * * *
87186430 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
87186470 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* * *
87186510 GCATAATTGCCTTCGGGTCTTGGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
87186550 GCACAAATGCCTTCGGGTTTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
87186590 GCACAAATGCCTTCAGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
87186630 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
87186670 GCACAAATGCCTTCGGATCTTTGCCCGGATATATCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
87186707 ATGCTCATGC
Statistics
Matches: 217, Mismatches: 20, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 217 1.00
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:87193382 original size:28 final size:29
Alignment explanation
Indices: 87193287--87193381 Score: 131
Period size: 29 Copynumber: 3.3 Consensus size: 29
87193277 TGAGCATGAC
87193287 TATAAATGTGAATTGGGCCT-GATGGGCCA
1 TATAAATGTGAATTGGGCCTAG-TGGGCCA
* * *
87193316 TATAAATGTGATTTGGGACTAATGGGCCA
1 TATAAATGTGAATTGGGCCTAGTGGGCCA
87193345 TATAAATGT-AATTGGGCCTAGTGGGCCA
1 TATAAATGTGAATTGGGCCTAGTGGGCCA
*
87193373 TATACATGT
1 TATAAATGT
87193382 ATGTGAACTT
Statistics
Matches: 58, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
28 24 0.41
29 34 0.59
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (29 bp):
TATAAATGTGAATTGGGCCTAGTGGGCCA
Found at i:87197794 original size:18 final size:19
Alignment explanation
Indices: 87197756--87197794 Score: 53
Period size: 21 Copynumber: 2.0 Consensus size: 19
87197746 CTGACCAGGG
87197756 CCTCTCGGTGGCTATTGAACA
1 CCTCTCGGTGGC--TTGAACA
87197777 CCTCTCGGTGGC-TGAACA
1 CCTCTCGGTGGCTTGAACA
87197795 GTATCCATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
21 12 0.67
ACGTcount: A:0.18, C:0.31, G:0.26, T:0.26
Consensus pattern (19 bp):
CCTCTCGGTGGCTTGAACA
Found at i:87205866 original size:29 final size:29
Alignment explanation
Indices: 87205815--87205881 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 29
87205805 GGCCCACTTG
* * *
87205815 GCCCAA-TCTCATTTATATGGCCCATCAC
1 GCCCAATTCACATTCATATGGCCCATCAA
87205843 GCCCAATTCACATTCATATGGCCCATCAA
1 GCCCAATTCACATTCATATGGCCCATCAA
*
87205872 GTCCAATTCA
1 GCCCAATTCA
87205882 TATATATATG
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 6 0.18
29 28 0.82
ACGTcount: A:0.28, C:0.34, G:0.10, T:0.27
Consensus pattern (29 bp):
GCCCAATTCACATTCATATGGCCCATCAA
Found at i:87205890 original size:29 final size:28
Alignment explanation
Indices: 87205827--87205893 Score: 89
Period size: 29 Copynumber: 2.3 Consensus size: 28
87205817 CCAATCTCAT
*
87205827 TTATATGGCCCATCACGCCCAATTCACA
1 TTATATGGCCCATCAAGCCCAATTCACA
* *
87205855 TTCATATGGCCCATCAAGTCCAATTCATA
1 TT-ATATGGCCCATCAAGCCCAATTCACA
87205884 TATATATGGC
1 T-TATATGGC
87205894 TCATTAGTCC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 2 0.06
29 31 0.91
30 1 0.03
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.30
Consensus pattern (28 bp):
TTATATGGCCCATCAAGCCCAATTCACA
Found at i:87206199 original size:16 final size:16
Alignment explanation
Indices: 87206159--87206201 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
87206149 GCAGCCAAAC
*
87206159 TTTCGGCTTTTCGGTA
1 TTTCGGCTTTTCGGCA
**
87206175 TTTTAGCTTTTCGGCA
1 TTTCGGCTTTTCGGCA
87206191 TTTCGGCTTTT
1 TTTCGGCTTTT
87206202 GCCAATCTAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.07, C:0.19, G:0.21, T:0.53
Consensus pattern (16 bp):
TTTCGGCTTTTCGGCA
Found at i:87206904 original size:28 final size:28
Alignment explanation
Indices: 87206864--87206923 Score: 102
Period size: 28 Copynumber: 2.1 Consensus size: 28
87206854 AAAAGAGAGT
87206864 AAAACAAAAGGGTTTTCAACTTGTAGGG
1 AAAACAAAAGGGTTTTCAACTTGTAGGG
**
87206892 AAAACAAAAGGGTTTTCGGCTTGTAGGG
1 AAAACAAAAGGGTTTTCAACTTGTAGGG
87206920 AAAA
1 AAAA
87206924 GGGTTTCCTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.40, C:0.10, G:0.27, T:0.23
Consensus pattern (28 bp):
AAAACAAAAGGGTTTTCAACTTGTAGGG
Found at i:87208928 original size:21 final size:22
Alignment explanation
Indices: 87208903--87208949 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 22
87208893 GCCCACGACC
87208903 CCTTGGCGGTAGCTGACCACCA
1 CCTTGGCGGTAGCTGACCACCA
*
87208925 -CTT---GGTGGCTGACCACCA
1 CCTTGGCGGTAGCTGACCACCA
87208943 CCTTGGC
1 CCTTGGC
87208950 CCACTAATGG
Statistics
Matches: 20, Mismatches: 1, Indels: 8
0.69 0.03 0.28
Matches are distributed among these distances:
18 14 0.70
19 3 0.15
21 3 0.15
ACGTcount: A:0.15, C:0.36, G:0.28, T:0.21
Consensus pattern (22 bp):
CCTTGGCGGTAGCTGACCACCA
Found at i:87211839 original size:16 final size:16
Alignment explanation
Indices: 87211815--87211849 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
87211805 GTAGACAAAC
*
87211815 TTTTTACTTTTCGGCA
1 TTTTGACTTTTCGGCA
87211831 TTTTGACTTTTCGGCA
1 TTTTGACTTTTCGGCA
87211847 TTT
1 TTT
87211850 CGGCTTTTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.11, C:0.17, G:0.14, T:0.57
Consensus pattern (16 bp):
TTTTGACTTTTCGGCA
Found at i:87211856 original size:16 final size:16
Alignment explanation
Indices: 87211820--87211857 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
87211810 CAAACTTTTT
*
87211820 ACTTTTCGGCATTTTG
1 ACTTTTCGGCATTTCG
87211836 ACTTTTCGGCATTTCG
1 ACTTTTCGGCATTTCG
*
87211852 GCTTTT
1 ACTTTT
87211858 GCCGATCTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.11, C:0.21, G:0.18, T:0.50
Consensus pattern (16 bp):
ACTTTTCGGCATTTCG
Found at i:87213477 original size:178 final size:178
Alignment explanation
Indices: 87213178--87213532 Score: 665
Period size: 178 Copynumber: 2.0 Consensus size: 178
87213168 ACCATGAGGG
* * * * *
87213178 GAGTAAATGTGCCTTTCTTGGTTGATCCCTTTCGCTTTATTACGTGCTCGTTTGGGTTGGGCGTC
1 GAGTAAAGGTACCTTTCTTGGCTGATCCCTTTCGCTTTATGACGTGCTCGTTTGGGTTGGGCATC
87213243 GGCTAAGAGTGCTCGGAGCGTGGATTAACTCCAGTCTCCAATCAGGTGTGTATTTATCACTACTC
66 GGCTAAGAGTGCTCGGAGCGTGGATTAACTCCAGTCTCCAATCAGGTGTGTATTTATCACTACTC
87213308 TTGTTGTTGGATGGCTACTTCGGGCCGCGATGGACCAAAAGGGGCCAA
131 TTGTTGTTGGATGGCTACTTCGGGCCGCGATGGACCAAAAGGGGCCAA
87213356 GAGTAAAGGTACCTTTCTTGGCTGATCCCTTTCGCTTTATGACGTGCTCGTTTGGGTTGGGCATC
1 GAGTAAAGGTACCTTTCTTGGCTGATCCCTTTCGCTTTATGACGTGCTCGTTTGGGTTGGGCATC
87213421 GGCTAAGAGTGCTCGGAGCGTGGATTAACTCCAGTCTCCAATCAGGTGTGTATTTATCACTACTC
66 GGCTAAGAGTGCTCGGAGCGTGGATTAACTCCAGTCTCCAATCAGGTGTGTATTTATCACTACTC
87213486 TTGTTGTTGGATGGCTACTTCGGGCCGCGATGGACCAAAAGGGGCCA
131 TTGTTGTTGGATGGCTACTTCGGGCCGCGATGGACCAAAAGGGGCCA
87213533 TGTGGGTCCA
Statistics
Matches: 172, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
178 172 1.00
ACGTcount: A:0.18, C:0.22, G:0.29, T:0.31
Consensus pattern (178 bp):
GAGTAAAGGTACCTTTCTTGGCTGATCCCTTTCGCTTTATGACGTGCTCGTTTGGGTTGGGCATC
GGCTAAGAGTGCTCGGAGCGTGGATTAACTCCAGTCTCCAATCAGGTGTGTATTTATCACTACTC
TTGTTGTTGGATGGCTACTTCGGGCCGCGATGGACCAAAAGGGGCCAA
Found at i:87213807 original size:27 final size:27
Alignment explanation
Indices: 87213777--87214240 Score: 569
Period size: 27 Copynumber: 17.2 Consensus size: 27
87213767 AAAGTACTCC
87213777 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
87213804 CGATTTTTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
87213831 CAATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
87213858 C-AGTTTACAGAATTACCATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
87213885 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
87213912 C-AGTTTACAGAATTACTGTTTGACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
87213939 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
87213966 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
87213993 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * **
87214020 -TAGTTTACAAAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
87214047 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
87214074 C-AGTTTACAAAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
87214101 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
87214128 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
87214155 TGATTTACAGAATTACTAG-TTTACCCT
1 CGATTTACAGAATTAC-CGTTTTACCCT
* * * *
87214182 CAATTTACAAAATTATCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
87214209 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
87214236 TGATT
1 CGATT
87214241 GTGAAATTAC
Statistics
Matches: 376, Mismatches: 51, Indels: 20
0.84 0.11 0.04
Matches are distributed among these distances:
26 4 0.01
27 367 0.98
28 5 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:87214370 original size:60 final size:60
Alignment explanation
Indices: 87214296--87214417 Score: 183
Period size: 60 Copynumber: 2.0 Consensus size: 60
87214286 CCCTATAGGG
* *
87214296 TAGAATTACTGAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAGAAT
1 TAGAATTACTGAAATACCCTTAGAGGATAGAAATACCAAAATACCCCTGTAGGGTAGAAT
* * *
87214356 TAGAATTA-TCGAAATACCCTTGGAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAT
1 TAGAATTACT-GAAATACCCTTAGAGGATAGAAATACCAAAATACCCCTGTAGGGTAGAAT
87214416 TA
1 TA
87214418 CCGAGATACC
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
59 1 0.02
60 55 0.98
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (60 bp):
TAGAATTACTGAAATACCCTTAGAGGATAGAAATACCAAAATACCCCTGTAGGGTAGAAT
Found at i:87214371 original size:33 final size:33
Alignment explanation
Indices: 87214323--87214417 Score: 112
Period size: 33 Copynumber: 3.1 Consensus size: 33
87214313 CCTTATAGGA
*
87214323 TAGAATTACCAAAATACCCCTGTAGGGTAGAAT
1 TAGAATTACCGAAATACCCCTGTAGGGTAGAAT
* * *
87214356 TAGAATTATCGAAATACCCTTGGAGGGTAG---
1 TAGAATTACCGAAATACCCCTGTAGGGTAGAAT
87214386 -A-AA-TACCGAAATACCCCTGTAGGGTAGAAT
1 TAGAATTACCGAAATACCCCTGTAGGGTAGAAT
87214416 TA
1 TA
87214418 CCGAGATACC
Statistics
Matches: 51, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
27 21 0.41
28 2 0.04
29 1 0.02
31 1 0.02
33 26 0.51
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.24
Consensus pattern (33 bp):
TAGAATTACCGAAATACCCCTGTAGGGTAGAAT
Found at i:87214397 original size:87 final size:87
Alignment explanation
Indices: 87214269--87214444 Score: 226
Period size: 87 Copynumber: 2.0 Consensus size: 87
87214259 CCCTATAGGG
* * * * *
87214269 TAGAATTTTCGAAATACCCCTATAGGGTAGAATTACTGAAATACCCTTATAGGATAGAATTACCA
1 TAGAATTATCGAAATACCCCTAGAGGGTAGAAATACCGAAATACCCCTATAGGATAGAATTACCA
*
87214334 AAATACCCCTGTAGGGTAGAAT
66 AAATACCCCTGTAGGGTAAAAT
* * * * *
87214356 TAGAATTATCGAAATACCCTTGGAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCG
1 TAGAATTATCGAAATACCCCTAGAGGGTAGAAATACCGAAATACCCCTATAGGATAGAATTACCA
* * *
87214421 AGATACCCTTGTGGGGTAAAAT
66 AAATACCCCTGTAGGGTAAAAT
87214443 TA
1 TA
87214445 CCATTTTGCC
Statistics
Matches: 75, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
87 75 1.00
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.26
Consensus pattern (87 bp):
TAGAATTATCGAAATACCCCTAGAGGGTAGAAATACCGAAATACCCCTATAGGATAGAATTACCA
AAATACCCCTGTAGGGTAAAAT
Found at i:87214437 original size:27 final size:27
Alignment explanation
Indices: 87214245--87214446 Score: 188
Period size: 27 Copynumber: 7.3 Consensus size: 27
87214235 TTGATTGTGA
* *
87214245 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
87214272 AATTTTCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
87214299 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
87214326 AATTACCAAAATACCCCTGTAGGGTAGAATTAG
1 AATTACCGAAATACCCCTGTA-GG--G---TAG
* * *
87214359 AATTATCGAAATACCCTTGGAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
87214386 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
87214413 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
87214440 AATTACC
1 AATTACC
87214447 ATTTTGCCCC
Statistics
Matches: 143, Mismatches: 26, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
27 118 0.83
28 2 0.01
30 1 0.01
32 2 0.01
33 20 0.14
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:87214688 original size:27 final size:26
Alignment explanation
Indices: 87214647--87214699 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 26
87214637 GAGGAAGCGG
*
87214647 TCTGGTGGCTATGCCACAAATATCTGT
1 TCTGGCGGCTATGCCAC-AATATCTGT
*
87214674 TCTGGCGGCTCTGCCACAATATCTGT
1 TCTGGCGGCTATGCCACAATATCTGT
87214700 AATTGGTGAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.19, C:0.26, G:0.23, T:0.32
Consensus pattern (26 bp):
TCTGGCGGCTATGCCACAATATCTGT
Found at i:87215060 original size:27 final size:27
Alignment explanation
Indices: 87215038--87215112 Score: 91
Period size: 27 Copynumber: 2.8 Consensus size: 27
87215028 TAGGTGGGTT
*
87215038 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
87215065 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
87215092 TGTCACGATATCTGT-TCTGGT
1 TGCCACAATATCTGTATCTGGT
87215113 AGCCATGCTG
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 6 0.14
27 36 0.84
28 1 0.02
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.37
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:87215238 original size:6 final size:6
Alignment explanation
Indices: 87215229--87215355 Score: 111
Period size: 6 Copynumber: 20.8 Consensus size: 6
87215219 TTGCATTCAC
*
87215229 ATTCTG ATTCTG ATTCTG --TCATG TAATTCTG ATTCTG ATTCTG -TTACTA
1 ATTCTG ATTCTG ATTCTG ATTC-TG --ATTCTG ATTCTG ATTCTG ATT-CTG
* * *
87215278 ATTCTG ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTTTG
1 ATTCTG ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG
*
87215327 ATTCTG -TTACTA ATTCTG ATTCTG ATTCT
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
87215356 CATTTTGGTT
Statistics
Matches: 99, Mismatches: 10, Indels: 24
0.74 0.08 0.18
Matches are distributed among these distances:
4 2 0.02
5 7 0.07
6 79 0.80
7 6 0.06
8 3 0.03
9 2 0.02
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:87215257 original size:25 final size:25
Alignment explanation
Indices: 87215229--87215323 Score: 118
Period size: 25 Copynumber: 3.6 Consensus size: 25
87215219 TTGCATTCAC
87215229 ATTCTGATTCTGATTCTGTCATGTA
1 ATTCTGATTCTGATTCTGTCATGTA
* *
87215254 ATTCTGATTCTGATTCTGTTACTAATTCTG
1 ATTCTGATTCTGATTCTG-T-C--A-TGTA
*
87215284 ATTCTGATTCTGATTCTGTCACGTA
1 ATTCTGATTCTGATTCTGTCATGTA
87215309 ATTCTGATTCTGATT
1 ATTCTGATTCTGATT
87215324 TTGATTCTGT
Statistics
Matches: 60, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
25 34 0.57
26 2 0.03
27 1 0.02
28 1 0.02
29 2 0.03
30 20 0.33
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.48
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCATGTA
Found at i:87215313 original size:55 final size:56
Alignment explanation
Indices: 87215229--87215355 Score: 193
Period size: 55 Copynumber: 2.2 Consensus size: 56
87215219 TTGCATTCAC
*
87215229 ATTCTGATTCTGATTCTGTCATGTAATTCTGATTC-TGATTCTGTTACTAATTCTG
1 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTTGATTCTGTTACTAATTCTG
87215284 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTTTGATTCTGTTACTAATTCTG
1 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTC-----TTGATTCTGTTACTAATTCTG
87215345 ATTCTGATTCT
1 ATTCTGATTCT
87215356 CATTTTGGTT
Statistics
Matches: 65, Mismatches: 1, Indels: 6
0.90 0.01 0.08
Matches are distributed among these distances:
55 34 0.52
61 31 0.48
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.50
Consensus pattern (56 bp):
ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTTGATTCTGTTACTAATTCTG
Found at i:87215372 original size:30 final size:30
Alignment explanation
Indices: 87215254--87215376 Score: 158
Period size: 30 Copynumber: 4.1 Consensus size: 30
87215244 CTGTCATGTA
*
87215254 ATTCTGATTCTGATTCTGTTACTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCAATTCTG
* *
87215284 ATTCTGATTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-CAATTCTG
* *
87215315 ATTCTGATTTTGATTCTGTTACTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCAATTCTG
* *
87215345 ATTCTGATTCTCATTTTGGTT-CCAATTCTG
1 ATTCTGATTCTGATTCT-GTTACCAATTCTG
87215375 AT
1 AT
87215377 AATGTTTCTT
Statistics
Matches: 84, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
30 53 0.63
31 31 0.37
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.50
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACCAATTCTG
Found at i:87216134 original size:28 final size:28
Alignment explanation
Indices: 87216103--87216158 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
87216093 TATTTTCAAC
87216103 CACGTGGTCTGTTTGAAGTATTTCTCTT
1 CACGTGGTCTGTTTGAAGTATTTCTCTT
*
87216131 CACGTGGTTTGTTTGAAGTATTTCTCTT
1 CACGTGGTCTGTTTGAAGTATTTCTCTT
87216159 AAAAAGTGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.14, C:0.16, G:0.21, T:0.48
Consensus pattern (28 bp):
CACGTGGTCTGTTTGAAGTATTTCTCTT
Found at i:87217600 original size:256 final size:256
Alignment explanation
Indices: 87217145--87217657 Score: 990
Period size: 256 Copynumber: 2.0 Consensus size: 256
87217135 CGATGGACCA
* * *
87217145 AAAGGGGCCATGTGGGTCCAATGGGCCTACGGGCCCAATTGGATAAGTTGTTTGATTGTGTAGTA
1 AAAGGGGCCACGTGGGCCCAATGGGCCAACGGGCCCAATTGGATAAGTTGTTTGATTGTGTAGTA
87217210 AATATTGGACTAGGCTAGGTGAATCGCATATCTGTGGCTAGGTTTGGGCTAAAAGGGCCACACGA
66 AATATTGGACTAGGCTAGGTGAATCGCATATCTGTGGCTAGGTTTGGGCTAAAAGGGCCACACGA
87217275 GCGTGTGGGCCCATTTGGGCCGACAATAGGCTTTAGGCCCATTCGTATTGTTATCCATGTTTAGA
131 GCGTGTGGGCCCATTTGGGCCGACAATAGGCTTTAGGCCCATTCGTATTGTTATCCATGTTTAGA
*
87217340 ATACTTTAGTTTACCAATTACTGAAATGCCCTCAACTTGTAAAATTACCAAAGTACTGCCG
196 ATACTTTAGTTTACCAATTACTGAAATGCCCTCAACTTGTAAAATTACCAAAGTACTCCCG
87217401 AAAGGGGCCACGTGGGCCCAATGGGCCAACGGGCCCAATTGGATAAGTTGTTTGATTGTGTAGTA
1 AAAGGGGCCACGTGGGCCCAATGGGCCAACGGGCCCAATTGGATAAGTTGTTTGATTGTGTAGTA
87217466 AATATTGGACTAGGCTAGGTGAATCGCATATCTGTGGCTAGGTTTGGGCTAAAAGGGCCACACGA
66 AATATTGGACTAGGCTAGGTGAATCGCATATCTGTGGCTAGGTTTGGGCTAAAAGGGCCACACGA
87217531 GCGTGTGGGCCCATTTGGGCCGACAATAGGCTTTAGGCCCATTCGTATTGTTATCCATGTTTAGA
131 GCGTGTGGGCCCATTTGGGCCGACAATAGGCTTTAGGCCCATTCGTATTGTTATCCATGTTTAGA
87217596 ATACTTTAGTTTACCAATTACTGAAATGCCCTCAACTTGTAAAATTACCAAAGTACTCCCG
196 ATACTTTAGTTTACCAATTACTGAAATGCCCTCAACTTGTAAAATTACCAAAGTACTCCCG
87217657 A
1 A
87217658 TTTACAGAAT
Statistics
Matches: 253, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
256 253 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (256 bp):
AAAGGGGCCACGTGGGCCCAATGGGCCAACGGGCCCAATTGGATAAGTTGTTTGATTGTGTAGTA
AATATTGGACTAGGCTAGGTGAATCGCATATCTGTGGCTAGGTTTGGGCTAAAAGGGCCACACGA
GCGTGTGGGCCCATTTGGGCCGACAATAGGCTTTAGGCCCATTCGTATTGTTATCCATGTTTAGA
ATACTTTAGTTTACCAATTACTGAAATGCCCTCAACTTGTAAAATTACCAAAGTACTCCCG
Found at i:87217687 original size:27 final size:27
Alignment explanation
Indices: 87217655--87218145 Score: 558
Period size: 27 Copynumber: 18.2 Consensus size: 27
87217645 AAAGTACTCC
87217655 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
87217682 TAATTTTCAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** * **
87217709 CAATTTTTAAAATTATAGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
87217736 CGATTTACAAAATTACCGTTTTATCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
87217763 C-AGTTTATAGAATTACCATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
87217790 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
87217817 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* * *
87217844 CGATTTATAGAATTACAGTTTTACCAT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** *
87217871 TGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
87217898 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
87217925 CAATTTACAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
87217952 CGATTTAAAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
87217979 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
87218006 CGATTTACAGAATTACCGTTTTACTCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
87218033 CAATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * * *
87218060 TGATTTACAAAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
87218087 C-ATTTTACAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
87218114 TGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
87218141 TGATT
1 CGATT
87218146 GTGAAATTAC
Statistics
Matches: 393, Mismatches: 63, Indels: 16
0.83 0.13 0.03
Matches are distributed among these distances:
26 4 0.01
27 385 0.98
28 4 0.01
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.42
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:87218180 original size:27 final size:27
Alignment explanation
Indices: 87218150--87218350 Score: 170
Period size: 27 Copynumber: 7.2 Consensus size: 27
87218140 TTGATTGTGA
87218150 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
87218177 AATT-TTCGAAATACCCCTATAAGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* * *
87218204 AATTACTGAAATACCCTTATAGGATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
**
87218231 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
87218258 AATTAGAATTATCGAAATACCCTTGTAGGGTAG
1 AATT---A--CT-GAAATACCCCTGTAGGGTAG
* * *
87218291 AAATACCGAAATCCCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * * *
87218318 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
87218345 AATTAC
1 AATTAC
87218351 CATTTTGCCC
Statistics
Matches: 139, Mismatches: 27, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
26 1 0.01
27 114 0.82
28 1 0.01
30 2 0.01
33 21 0.15
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:87218218 original size:54 final size:54
Alignment explanation
Indices: 87218150--87218351 Score: 215
Period size: 54 Copynumber: 3.6 Consensus size: 54
87218140 TTGATTGTGA
* ** * *
87218150 AATTACTGAAATACCCCTGTAGGGTAGAATTTTCGAAATACCCCTATAAGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
87218204 AATTACTGAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
87218258 AATTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATCCCCCTGTAGGGTAG
1 AATT---A--CT-GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * *
87218318 AATTACCGAGATACCCTTGTGGGGTAAAATTACC
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACC
87218352 ATTTTGCCCC
Statistics
Matches: 122, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
54 73 0.60
57 2 0.02
59 1 0.01
60 46 0.38
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:87218275 original size:60 final size:60
Alignment explanation
Indices: 87218201--87218322 Score: 183
Period size: 60 Copynumber: 2.0 Consensus size: 60
87218191 CCCTATAAGG
*
87218201 TAGAATTACTGAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAGAAT
1 TAGAATTACTGAAATACCCTTATAGGATAGAAATACCAAAATACCCCTGTAGGGTAGAAT
* * * *
87218261 TAGAATTA-TCGAAATACCCTTGTAGGGTAGAAATACCGAAATCCCCCTGTAGGGTAGAAT
1 TAGAATTACT-GAAATACCCTTATAGGATAGAAATACCAAAATACCCCTGTAGGGTAGAAT
87218321 TA
1 TA
87218323 CCGAGATACC
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
59 1 0.02
60 55 0.98
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.26
Consensus pattern (60 bp):
TAGAATTACTGAAATACCCTTATAGGATAGAAATACCAAAATACCCCTGTAGGGTAGAAT
Found at i:87218276 original size:33 final size:33
Alignment explanation
Indices: 87218228--87218322 Score: 112
Period size: 33 Copynumber: 3.1 Consensus size: 33
87218218 CCTTATAGGA
*
87218228 TAGAATTACCAAAATACCCCTGTAGGGTAGAAT
1 TAGAATTACCGAAATACCCCTGTAGGGTAGAAT
* *
87218261 TAGAATTATCGAAATACCCTTGTAGGGTAG---
1 TAGAATTACCGAAATACCCCTGTAGGGTAGAAT
*
87218291 -A-AA-TACCGAAATCCCCCTGTAGGGTAGAAT
1 TAGAATTACCGAAATACCCCTGTAGGGTAGAAT
87218321 TA
1 TA
87218323 CCGAGATACC
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
27 21 0.40
28 2 0.04
29 1 0.02
31 1 0.02
33 27 0.52
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (33 bp):
TAGAATTACCGAAATACCCCTGTAGGGTAGAAT
Found at i:87218302 original size:87 final size:87
Alignment explanation
Indices: 87218174--87218349 Score: 217
Period size: 87 Copynumber: 2.0 Consensus size: 87
87218164 CCCTGTAGGG
* * * *
87218174 TAGAATTTTCGAAATACCCCTATAAGGTAGAATTACTGAAATACCCTTATAGGATAGAATTACCA
1 TAGAATTATCGAAATACCCCTATAAGGTAGAAATACCGAAATACCCCTATAGGATAGAATTACCA
*
87218239 AAATACCCCTGTAGGGTAGAAT
66 AAATACCCCTGTAGGGTAAAAT
* * * * * * *
87218261 TAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATCCCCCTGTAGGGTAGAATTACCG
1 TAGAATTATCGAAATACCCCTATAAGGTAGAAATACCGAAATACCCCTATAGGATAGAATTACCA
* * *
87218326 AGATACCCTTGTGGGGTAAAAT
66 AAATACCCCTGTAGGGTAAAAT
87218348 TA
1 TA
87218350 CCATTTTGCC
Statistics
Matches: 74, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
87 74 1.00
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (87 bp):
TAGAATTATCGAAATACCCCTATAAGGTAGAAATACCGAAATACCCCTATAGGATAGAATTACCA
AAATACCCCTGTAGGGTAAAAT
Found at i:87218588 original size:27 final size:26
Alignment explanation
Indices: 87218550--87218632 Score: 96
Period size: 27 Copynumber: 3.1 Consensus size: 26
87218540 CGGAGGAAGC
87218550 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
87218577 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * *
87218603 GTAAT-TGGTGACTCTGTCACAATATCT
1 GT--TCTGGTGGCTATGCCACAATATCT
87218630 GTT
1 GTT
87218633 GACCGATCGA
Statistics
Matches: 51, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
25 1 0.02
26 9 0.18
27 40 0.78
28 1 0.02
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:87218754 original size:22 final size:22
Alignment explanation
Indices: 87218720--87218778 Score: 55
Period size: 22 Copynumber: 2.7 Consensus size: 22
87218710 CCCGTTATTA
* *
87218720 ATGGCTCTATGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
87218742 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
87218764 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
87218779 ACGTATTTAC
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:87218965 original size:27 final size:27
Alignment explanation
Indices: 87218943--87218997 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
87218933 TAGGTGGGTT
*
87218943 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
87218970 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
87218997 T
1 T
87218998 ATCACGATGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 24 0.96
28 1 0.04
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:87219143 original size:6 final size:6
Alignment explanation
Indices: 87219134--87219233 Score: 107
Period size: 6 Copynumber: 16.5 Consensus size: 6
87219124 TTGCATTCAT
* * *
87219134 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
*
87219183 -TTACTA ATTCTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
87219231 ATT
1 ATT
87219234 TTCATTTTAG
Statistics
Matches: 79, Mismatches: 8, Indels: 14
0.78 0.08 0.14
Matches are distributed among these distances:
5 5 0.06
6 67 0.85
7 6 0.08
8 1 0.01
ACGTcount: A:0.19, C:0.16, G:0.15, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:87219193 original size:30 final size:30
Alignment explanation
Indices: 87219134--87219233 Score: 164
Period size: 30 Copynumber: 3.3 Consensus size: 30
87219124 TTGCATTCAT
*
87219134 ATTCTGATTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-TAATTCTG
*
87219165 ATTCTGATTTTGATTCTGTTACTAATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
*
87219195 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
87219225 ATTCTGATT
1 ATTCTGATT
87219234 TTCATTTTAG
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
30 45 0.69
31 20 0.31
ACGTcount: A:0.19, C:0.16, G:0.15, T:0.50
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:87222384 original size:18 final size:18
Alignment explanation
Indices: 87222361--87222397 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
87222351 TTATATGCTT
*
87222361 TATTTTATTATTATATTA
1 TATTTTATTAATATATTA
*
87222379 TATTTTGTTAATATATTA
1 TATTTTATTAATATATTA
87222397 T
1 T
87222398 TATATTAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (18 bp):
TATTTTATTAATATATTA
Found at i:87226666 original size:29 final size:29
Alignment explanation
Indices: 87226629--87226702 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
87226619 GTTGTGGGAT
* * *
87226629 TGGCGCTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
87226658 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
87226687 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
87226703 TGATTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 5 0.12
29 35 0.88
ACGTcount: A:0.24, C:0.16, G:0.34, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:87227077 original size:17 final size:17
Alignment explanation
Indices: 87227055--87227089 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
87227045 GATTGAATCG
87227055 TAAGGTCTAAGAAACTA
1 TAAGGTCTAAGAAACTA
87227072 TAAGGTCTAAGAAACTA
1 TAAGGTCTAAGAAACTA
87227089 T
1 T
87227090 GGCATAGTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.11, G:0.17, T:0.26
Consensus pattern (17 bp):
TAAGGTCTAAGAAACTA
Found at i:87232703 original size:70 final size:70
Alignment explanation
Indices: 87232590--87232728 Score: 269
Period size: 70 Copynumber: 2.0 Consensus size: 70
87232580 AAATTATTGG
*
87232590 TTGGAGGTGCTGAATGTGGTCTTGGATGAGTTTTAAAGAATAAAAATTTAGGTGACTAGAGGTCA
1 TTGGAGGTGCCGAATGTGGTCTTGGATGAGTTTTAAAGAATAAAAATTTAGGTGACTAGAGGTCA
87232655 AGGAA
66 AGGAA
87232660 TTGGAGGTGCCGAATGTGGTCTTGGATGAGTTTTAAAGAATAAAAATTTAGGTGACTAGAGGTCA
1 TTGGAGGTGCCGAATGTGGTCTTGGATGAGTTTTAAAGAATAAAAATTTAGGTGACTAGAGGTCA
87232725 AGGA
66 AGGA
87232729 CATTCGGTCA
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 68 1.00
ACGTcount: A:0.32, C:0.06, G:0.32, T:0.29
Consensus pattern (70 bp):
TTGGAGGTGCCGAATGTGGTCTTGGATGAGTTTTAAAGAATAAAAATTTAGGTGACTAGAGGTCA
AGGAA
Found at i:87234972 original size:16 final size:16
Alignment explanation
Indices: 87234951--87234982 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
87234941 CCATTCGGAA
*
87234951 TATATGTGTAATAATC
1 TATATGTGTAAAAATC
87234967 TATATGTGTAAAAATC
1 TATATGTGTAAAAATC
87234983 CTTGACCTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.06, G:0.12, T:0.41
Consensus pattern (16 bp):
TATATGTGTAAAAATC
Found at i:87236593 original size:57 final size:57
Alignment explanation
Indices: 87236499--87236612 Score: 210
Period size: 57 Copynumber: 2.0 Consensus size: 57
87236489 AAACAACACT
87236499 CGATTAAAACCTTATTTTGATGAGATTGATAACAGGAATGAGGAGTATAAACTCCTC
1 CGATTAAAACCTTATTTTGATGAGATTGATAACAGGAATGAGGAGTATAAACTCCTC
**
87236556 CGATTAAAACCTTATTTTGATGAGATTGATAGTAGGAATGAGGAGTATAAACTCCTC
1 CGATTAAAACCTTATTTTGATGAGATTGATAACAGGAATGAGGAGTATAAACTCCTC
87236613 AAACCACCAT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (57 bp):
CGATTAAAACCTTATTTTGATGAGATTGATAACAGGAATGAGGAGTATAAACTCCTC
Found at i:87236996 original size:31 final size:31
Alignment explanation
Indices: 87236961--87237036 Score: 98
Period size: 34 Copynumber: 2.4 Consensus size: 31
87236951 GAGAAAACCT
*
87236961 ACACGACCGTGGGAGAAGTGAACCACATCGG
1 ACACGACCGTGGGAGAAGTGAACCACACCGG
*
87236992 ACACGGCCNCCGTGGGAGAAGTGAACCACACCGG
1 ACAC-G--ACCGTGGGAGAAGTGAACCACACCGG
*
87237026 ACACGGCCGTG
1 ACACGACCGTG
87237037 TGACATGATC
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
31 9 0.23
32 1 0.03
33 1 0.03
34 28 0.72
ACGTcount: A:0.28, C:0.30, G:0.33, T:0.08
Consensus pattern (31 bp):
ACACGACCGTGGGAGAAGTGAACCACACCGG
Found at i:87237005 original size:34 final size:33
Alignment explanation
Indices: 87236967--87237033 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 33
87236957 ACCTACACGA
*
87236967 CCGTGGGAGAAGTGAACCACATCGGACACGGCC
1 CCGTGGGAGAAGTGAACCACACCGGACACGGCC
87237000 NCCGTGGGAGAAGTGAACCACACCGGACACGGCC
1 -CCGTGGGAGAAGTGAACCACACCGGACACGGCC
87237034 GTGTGACATG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.27, C:0.31, G:0.33, T:0.07
Consensus pattern (33 bp):
CCGTGGGAGAAGTGAACCACACCGGACACGGCC
Found at i:87238377 original size:113 final size:113
Alignment explanation
Indices: 87238179--87238404 Score: 398
Period size: 113 Copynumber: 2.0 Consensus size: 113
87238169 GTCTGAGAAG
* *
87238179 AAGCTCTATTGTAAGAAAGTAATGATTAACTCTTTTTCTAGTTAGGTTATTTTTCAATTCAATCT
1 AAGCTCTATTGTAAGAAAGTAATGATTAACCCTTTTTCTAGTTAGGTAATTTTTCAATTCAATCT
87238244 CGATTCTAACCCTTTTTTTTAGCTTGTGACCACACCCCCTAACCAAGC
66 CGATTCTAACCCTTTTTTTTAGCTTGTGACCACACCCCCTAACCAAGC
* * * *
87238292 AAGCTCTGTTGTACGCAAGTACTGATTAACCCTTTTTCTAGTTAGGTAATTTTTCAATTCAATCT
1 AAGCTCTATTGTAAGAAAGTAATGATTAACCCTTTTTCTAGTTAGGTAATTTTTCAATTCAATCT
87238357 CGATTCTAACCCTTTTTTTTAGCTTGTGACCACACCCCCTAACCAAGC
66 CGATTCTAACCCTTTTTTTTAGCTTGTGACCACACCCCCTAACCAAGC
87238405 CTCATTACAA
Statistics
Matches: 107, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
113 107 1.00
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.38
Consensus pattern (113 bp):
AAGCTCTATTGTAAGAAAGTAATGATTAACCCTTTTTCTAGTTAGGTAATTTTTCAATTCAATCT
CGATTCTAACCCTTTTTTTTAGCTTGTGACCACACCCCCTAACCAAGC
Found at i:87250913 original size:39 final size:38
Alignment explanation
Indices: 87250859--87250963 Score: 174
Period size: 39 Copynumber: 2.7 Consensus size: 38
87250849 CCAACATAAT
87250859 TGCCTTCGGGACTTAGCCCAGATATAACACCAGCACGAA
1 TGCCTTCGGGACTTAGCCC-GATATAACACCAGCACGAA
*
87250898 TGCCTTCGGGACTTAGCCCGAATATAACACCAGTACGAA
1 TGCCTTCGGGACTTAGCCCG-ATATAACACCAGCACGAA
87250937 TGCCTTCGGGACTTAGCCCGGATATAA
1 TGCCTTCGGGACTTAGCCC-GATATAA
87250964 ATCTCACACA
Statistics
Matches: 63, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
38 1 0.02
39 61 0.97
40 1 0.02
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.21
Consensus pattern (38 bp):
TGCCTTCGGGACTTAGCCCGATATAACACCAGCACGAA
Found at i:87252751 original size:729 final size:725
Alignment explanation
Indices: 87251322--87252775 Score: 2775
Period size: 729 Copynumber: 2.0 Consensus size: 725
87251312 TATTTTTGAA
87251322 CAGTTGTGGATAGGCTATTCGATTACTTTCCCCTTTCCCTTATCTGATCTAGCTCCTCTTTGCTC
1 CAGTTGTGGATAGGCTATTCGATTACTTTCCCCTTTCCCTTATCTGATCTAGCTCCTCTTTGCTC
* *
87251387 ATGAGCTTAATTTAAACAAATGAATTTATTTAATTACTTATTCAACTATACTTCTTAGTAGTCAC
66 ATGAGCTTAATTTAAACAAATGAATTTATTTAATTACTTATTCAACTAAACTTCTTAATAGTCAC
87251452 ATATAACAATCATACATAACTCCAATACATATTTATATTTTATAAAATATGCCATGACTCAATTT
131 ATATAACAATCATACATAACTCCAATACATATTTATATTTTATAAAATATGCCATGACTCAATTT
87251517 CATGCTTATTTATTCTCTATCAAATTCGCATGCACAACAAAGATTTACATAACTTATTATGCTAC
196 CATGCTTATTTATTCTCTATCAAATTCGCATGCACAACAAAGATTTACATAACTTATTATGCTAC
87251582 CTTATACATGAATTTAACTATATATATATAGTATATATATATTCAAATGTCTCTATGACGCAAGG
261 CTTATACATGAATTTAACTATATATATATAGTATATATATATTCAAATGTCTCTATGACGCAAGG
87251647 TGTATACATAAGGCATAAATATACATATATATAGTGCATGCCGTGATATCATATAAACCCCATTC
326 TGTATACATAAGGCATAAATATACATATATATAGTGCATGCCGTGATATCATATAAACCCCATTC
*
87251712 GGCCCTAGCTAAACAAACTTTGCCTCCATTTAAAATTCCATTTCATGACCAATGTAGCAATTTCG
391 GGCCCTAACTAAACAAACTTTGCCTCCATTTAAAATTCCATTTCATGACCAATGTAGCAATTTCG
* *
87251777 TATTAGTATCACCTATTCCAAACAATGATCGAATCACTCAATCAAATTTATAGCCGATTCTATCT
456 TATTAGTATCACCTATGCCAAACAATGACCGAATCACTCAATCAAATTTATAGCCGATTCTATCT
87251842 TGTTCATATTAAGGTCATAACTCACTTAAAGTAACTTCTAATCTTTCACACTCTCATATCCATTA
521 TGTTCATATTAAGGTCATAACTCACTTAAAGTAACTTCTAATCTTTCACACTCTCATATCCATTA
87251907 TTATAAGTATTGCCGAATGCTTAAACATAATTAAGCTAAAAAAAATTTATCCAACACCATCTTAA
586 TTATAAGTATTGCCGAATGCTTAAACATAATTAAGCTAAAAAAAATTTATCCAACACCATCTTAA
87251972 TTAATTTCTACTTATTCATTAAAATTTCAAATACAAAGTATTTAACACCTATACACTTAAACCGA
651 TTAATTTCTACTTATTCATTAAAATTTCAAATACAAAGTATTTAACACCTATACACTTAAACCGA
87252037 ATTAGCAAAC
716 ATTAGCAAAC
87252047 CAGTTGTGGATAGGCTATTCGATTACTTTCCCCTTTCCCTTATCTGATCTAGCTCCTCTTTGCTC
1 CAGTTGTGGATAGGCTATTCGATTACTTTCCCCTTTCCCTTATCTGATCTAGCTCCTCTTTGCTC
87252112 ATGAGCTTAATTTAAACAAATGAATTTATTTAATTACTTATTCAACTAAACTTCTTAATAGTCAC
66 ATGAGCTTAATTTAAACAAATGAATTTATTTAATTACTTATTCAACTAAACTTCTTAATAGTCAC
87252177 ATATAACAATCATACATAACTCCAATACATATTTATATTTTATAAAATATGCCATGACTCAATTT
131 ATATAACAATCATACATAACTCCAATACATATTTATATTTTATAAAATATGCCATGACTCAATTT
*
87252242 CATGCTTATTTATTCTCTATCTAATTCGCATGCACAACAAAGATTTACATAACTTATTATGCTAC
196 CATGCTTATTTATTCTCTATCAAATTCGCATGCACAACAAAGATTTACATAACTTATTATGCTAC
87252307 CTTATACATGAATTTAACTATATATATAGT-GTATATATATATTCAAATGTCTCTATGACGCAAG
261 CTTATACATGAATTTAACTATATATATA-TAGTATATATATATTCAAATGTCTCTATGACGCAAG
*
87252371 GTGTATACATAAGGCATAAATATACATATATATATATAGTGCATGCCTTGATATCATATAAACCC
325 GTGTATACATAAGGCATAAATATAC----ATATATATAGTGCATGCCGTGATATCATATAAACCC
*
87252436 CATTCGGCCCTAACTAAACAAACTTTGCCTCCATTTAAAATTTCATTTCATGACCAATGTAGCAA
386 CATTCGGCCCTAACTAAACAAACTTTGCCTCCATTTAAAATTCCATTTCATGACCAATGTAGCAA
*
87252501 TTTCGTATTAGTATCACCTATGCCAAACAATGACCGAATCACTCAATCACATTTATAGCCGATTC
451 TTTCGTATTAGTATCACCTATGCCAAACAATGACCGAATCACTCAATCAAATTTATAGCCGATTC
87252566 TATCTTGTTCATATTAAGGTCATAACTCACTTAAAGTAACTTCTAATCTTTCACACTCTCATATC
516 TATCTTGTTCATATTAAGGTCATAACTCACTTAAAGTAACTTCTAATCTTTCACACTCTCATATC
87252631 CATTATTATAAGTATTGCCGAATGCTTAAACATAATTAAGCTAAAAAAAATTTATCCAACACCAT
581 CATTATTATAAGTATTGCCGAATGCTTAAACATAATTAAGCTAAAAAAAATTTATCCAACACCAT
87252696 CTTAATTAATTTCTACTTATTCATTAAAATTTCAAATACAAAGTATTTAACACCTATACACTTAA
646 CTTAATTAATTTCTACTTATTCATTAAAATTTCAAATACAAAGTATTTAACACCTATACACTTAA
87252761 ACCGAATTAGCAAAC
711 ACCGAATTAGCAAAC
87252776 ACCTATAGAC
Statistics
Matches: 715, Mismatches: 9, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
725 344 0.48
726 1 0.00
729 370 0.52
ACGTcount: A:0.36, C:0.20, G:0.08, T:0.36
Consensus pattern (725 bp):
CAGTTGTGGATAGGCTATTCGATTACTTTCCCCTTTCCCTTATCTGATCTAGCTCCTCTTTGCTC
ATGAGCTTAATTTAAACAAATGAATTTATTTAATTACTTATTCAACTAAACTTCTTAATAGTCAC
ATATAACAATCATACATAACTCCAATACATATTTATATTTTATAAAATATGCCATGACTCAATTT
CATGCTTATTTATTCTCTATCAAATTCGCATGCACAACAAAGATTTACATAACTTATTATGCTAC
CTTATACATGAATTTAACTATATATATATAGTATATATATATTCAAATGTCTCTATGACGCAAGG
TGTATACATAAGGCATAAATATACATATATATAGTGCATGCCGTGATATCATATAAACCCCATTC
GGCCCTAACTAAACAAACTTTGCCTCCATTTAAAATTCCATTTCATGACCAATGTAGCAATTTCG
TATTAGTATCACCTATGCCAAACAATGACCGAATCACTCAATCAAATTTATAGCCGATTCTATCT
TGTTCATATTAAGGTCATAACTCACTTAAAGTAACTTCTAATCTTTCACACTCTCATATCCATTA
TTATAAGTATTGCCGAATGCTTAAACATAATTAAGCTAAAAAAAATTTATCCAACACCATCTTAA
TTAATTTCTACTTATTCATTAAAATTTCAAATACAAAGTATTTAACACCTATACACTTAAACCGA
ATTAGCAAAC
Found at i:87259152 original size:48 final size:46
Alignment explanation
Indices: 87259009--87259182 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 46
87258999 ACATCTTGTA
* * * *
87259009 CCGATGCAAGTCCCAGACATTTCTTACACTGGCTTACATTTCGA-GG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCTTTCATATC-ATGG
* ** * * *
87259055 CCGATGCATGTCCCTGACATGTCTTACACTGGCACTCGTCTCATTG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCTTTCATATCATGG
87259101 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATAAT-ATGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTTCAT-ATCATGG
* * * *
87259149 CCGATGCATGTCCGAAATATGTCTTACACGGGCT
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCT
87259183 CACATAACAG
Statistics
Matches: 105, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
45 1 0.01
46 54 0.51
47 24 0.23
48 25 0.24
49 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.29
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCTTTCATATCATGG
Found at i:87259171 original size:94 final size:91
Alignment explanation
Indices: 87259009--87259177 Score: 214
Period size: 94 Copynumber: 1.8 Consensus size: 91
87258999 ACATCTTGTA
* * **
87259009 CCGATGCAAGTCCCAGACATTTCTTACACTGGCTTACATTTCGAGGCCGATGCATGTCCCTGACA
1 CCGATGCAAGTCCCAGACATGTCTTACACTGGCTTACATATC-AGGCCGATGCATGTCCCAAACA
87259074 TGTCTTACACTGGCACTCGTCTCATTG
65 TGTCTTACACTGGCACTCGTCTCATTG
* * *
87259101 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATAAT-ATGGCCGATGCATGTCCGAA
1 CCGATG-CAAGTCCCAGACAT-GTCTTACACTGGCTTACAT-ATCA-GGCCGATGCATGTCCCAA
*
87259165 ATATGTCTTACAC
62 ACATGTCTTACAC
87259178 GGGCTCACAT
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
92 6 0.09
93 14 0.22
94 44 0.68
95 1 0.02
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (91 bp):
CCGATGCAAGTCCCAGACATGTCTTACACTGGCTTACATATCAGGCCGATGCATGTCCCAAACAT
GTCTTACACTGGCACTCGTCTCATTG
Found at i:87263977 original size:40 final size:40
Alignment explanation
Indices: 87263910--87264086 Score: 234
Period size: 40 Copynumber: 4.5 Consensus size: 40
87263900 ACCCAAGTAT
*
87263910 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
87263949 CCTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
87263989 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* *
87264029 CTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
87264069 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
87264087 TTATCATCCG
Statistics
Matches: 119, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 12 0.10
40 104 0.87
41 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:87265914 original size:37 final size:38
Alignment explanation
Indices: 87265864--87265941 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 38
87265854 AGATAAACTC
* *
87265864 ACTATGGCATGTACAC-ATTCTA-TTTCAACTCATCATA
1 ACTATGCCATGTAC-CTATTCGAGTTTCAACTCATCATA
*
87265901 ACTATGCCATGTACCTTTTCGAGTTTCAACTCATCATA
1 ACTATGCCATGTACCTATTCGAGTTTCAACTCATCATA
87265939 ACT
1 ACT
87265942 GCACTTTATT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
36 1 0.03
37 17 0.47
38 18 0.50
ACGTcount: A:0.29, C:0.26, G:0.09, T:0.36
Consensus pattern (38 bp):
ACTATGCCATGTACCTATTCGAGTTTCAACTCATCATA
Found at i:87268415 original size:44 final size:45
Alignment explanation
Indices: 87268362--87268527 Score: 160
Period size: 44 Copynumber: 3.6 Consensus size: 45
87268352 CACATCCATA
**
87268362 CCGATGCATGTCCCAGACATGTCTTACACTAGCAC-ATCT-GGTAG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCACTATCTCAAT-G
* *
87268406 CCGATGCATGTCCCAGACATGTCTTACACTGGCACTTTTCTCAATG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCAC-TATCTCAATG
* * *
87268452 CCGATGTCATGTCCCAGACATGGTCTTACACT-G-GCTTTCATAATATGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTATC-TCA-AT-G
* *
87268500 CCAATGCATGTCCCAGACATATCTTACA
1 CCGATGCATGTCCCAGACATGTCTTACA
87268528 TAGGCTCACA
Statistics
Matches: 106, Mismatches: 8, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
44 34 0.32
45 4 0.04
46 20 0.19
47 32 0.30
48 16 0.15
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (45 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCACTATCTCAATG
Found at i:87288784 original size:21 final size:21
Alignment explanation
Indices: 87288758--87288800 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
87288748 AATAGCATAG
87288758 GATACAAATGTCATGACATTA
1 GATACAAATGTCATGACATTA
87288779 GATACAAATGTCATGACATTA
1 GATACAAATGTCATGACATTA
87288800 G
1 G
87288801 GTTATCGAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (21 bp):
GATACAAATGTCATGACATTA
Found at i:87288859 original size:43 final size:44
Alignment explanation
Indices: 87288810--87288976 Score: 164
Period size: 43 Copynumber: 3.9 Consensus size: 44
87288800 GGTTATCGAG
* *
87288810 ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCATTGTAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* *
87288854 -TGTGATTACGTGTAAGACCATG-CTTGGGACATTGGCACCGT-T
1 ATGTGATTACATGTAAGACCATGTC-TGGGACATTGGCATCGTAT
* * * * * * *
87288896 ATATGATTTCGTGTGAGACCCTGTCTGGGATAGTGGCATCG-AT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * *
87288939 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT
87288977 TGTACGAGCT
Statistics
Matches: 101, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
42 8 0.08
43 92 0.91
44 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:87305103 original size:21 final size:21
Alignment explanation
Indices: 87305074--87305115 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
87305064 TTATCAGATC
*
87305074 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGAATCGGGGG
* *
87305095 TACAGCTTGAGTAATCGGGGG
1 TACACCTTGAGGAATCGGGGG
87305116 AGGTGGGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (21 bp):
TACACCTTGAGGAATCGGGGG
Found at i:87312912 original size:20 final size:21
Alignment explanation
Indices: 87312870--87312912 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
87312860 GATTTAACGA
*
87312870 TTGATGATAGATTATGAATGT
1 TTGATGATAGATTATGAAAGT
87312891 TTGATGATAG-TTAT-ACAAGT
1 TTGATGATAGATTATGA-AAGT
87312911 TT
1 TT
87312913 TTGTTAAGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 9 0.45
21 10 0.50
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.44
Consensus pattern (21 bp):
TTGATGATAGATTATGAAAGT
Found at i:87313539 original size:48 final size:48
Alignment explanation
Indices: 87313473--87313597 Score: 144
Period size: 48 Copynumber: 2.6 Consensus size: 48
87313463 TTGGCTTTGG
* *
87313473 GCCATTATATTGGAACTTCGGGTGTGAGATT-TGTTAAATTGGCTTCAA
1 GCCATGATATTGGCACTTCGGGTGTGAGATTCT-TTAAATTGGCTTCAA
* ** * * **
87313521 GCCATGATATTGGCACTTCGAGTGCAAGATTCTTTGAGTTGGCTTCTG
1 GCCATGATATTGGCACTTCGGGTGTGAGATTCTTTAAATTGGCTTCAA
*
87313569 GCCATGATATTGGCACTTAGGGTGTGAGA
1 GCCATGATATTGGCACTTCGGGTGTGAGA
87313598 CTCTCGAGTA
Statistics
Matches: 63, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
48 62 0.98
49 1 0.02
ACGTcount: A:0.22, C:0.15, G:0.28, T:0.34
Consensus pattern (48 bp):
GCCATGATATTGGCACTTCGGGTGTGAGATTCTTTAAATTGGCTTCAA
Found at i:87322454 original size:38 final size:38
Alignment explanation
Indices: 87322409--87322538 Score: 125
Period size: 38 Copynumber: 3.4 Consensus size: 38
87322399 ATATGCTAGA
* *
87322409 ATTATATCCGGGTTAAATCCCACATGCTTCGTGCTGGT
1 ATTATATCCGGGTTAAATCCCATAAGCTTCGTGCTGGT
** * * *
87322447 ATTATATCCGGGTTAAATCCTGTAGGCCTGGTGCTGGT
1 ATTATATCCGGGTTAAATCCCATAAGCTTCGTGCTGGT
** *
87322485 ATTATATCTAAGTTTAAAGTCCCATAAGCTTCGTGCTGGT
1 ATTATATC-CGGGTTAAA-TCCCATAAGCTTCGTGCTGGT
* * *
87322525 GTTATGTTCGGGTT
1 ATTATATCCGGGTT
87322539 TTATACCTCG
Statistics
Matches: 70, Mismatches: 20, Indels: 3
0.75 0.22 0.03
Matches are distributed among these distances:
38 40 0.57
39 9 0.13
40 21 0.30
ACGTcount: A:0.21, C:0.18, G:0.24, T:0.37
Consensus pattern (38 bp):
ATTATATCCGGGTTAAATCCCATAAGCTTCGTGCTGGT
Found at i:87324637 original size:32 final size:32
Alignment explanation
Indices: 87324596--87324680 Score: 143
Period size: 32 Copynumber: 2.7 Consensus size: 32
87324586 TGAAATTGAA
* *
87324596 ATGGGCTAGGCCCAATTGATATTGGTTCTGAT
1 ATGGGCTAGGCCCAATTGATATTGATTCTGAG
*
87324628 ATGGGCTAGGCCCAACTGATATTGATTCTGAG
1 ATGGGCTAGGCCCAATTGATATTGATTCTGAG
87324660 ATGGGCTAGGCCCAATTGATA
1 ATGGGCTAGGCCCAATTGATA
87324681 CTGTGATGGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 49 1.00
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (32 bp):
ATGGGCTAGGCCCAATTGATATTGATTCTGAG
Found at i:87330071 original size:64 final size:64
Alignment explanation
Indices: 87329991--87330174 Score: 187
Period size: 67 Copynumber: 2.8 Consensus size: 64
87329981 AGACATTATG
* * *
87329991 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTATGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
87330055 ATGTAGCTAGGTCGCATGCGTGGCT-CTAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCGCATGGGT-GATACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
87330119 TAA
62 TAA
* * * *
87330122 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGC
87330175 CGAACTATAT
Statistics
Matches: 99, Mismatches: 14, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 24 0.24
65 4 0.04
66 19 0.19
67 32 0.32
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:87332514 original size:56 final size:56
Alignment explanation
Indices: 87332447--87332561 Score: 221
Period size: 56 Copynumber: 2.1 Consensus size: 56
87332437 AATAATTTAG
*
87332447 TGACTATTGCTCAGGAAAAACAGCTTGTGCTGAATTTGAGATTGTGTTGTAAACCT
1 TGACTATTGCTCAGGAAAAACAGCTTGTGCTGAATTTGAGATTATGTTGTAAACCT
87332503 TGACTATTGCTCAGGAAAAACAGCTTGTGCTGAATTTGAGATTATGTTGTAAACCT
1 TGACTATTGCTCAGGAAAAACAGCTTGTGCTGAATTTGAGATTATGTTGTAAACCT
87332559 TGA
1 TGA
87332562 TAAACTTGTT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 58 1.00
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.34
Consensus pattern (56 bp):
TGACTATTGCTCAGGAAAAACAGCTTGTGCTGAATTTGAGATTATGTTGTAAACCT
Found at i:87332851 original size:47 final size:49
Alignment explanation
Indices: 87332764--87332871 Score: 175
Period size: 47 Copynumber: 2.2 Consensus size: 49
87332754 GTATATTTGA
87332764 ATGAATGTGAAAGCGTATATATATGTGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAA-CGTATATATA-GTGTGATAAGGCCTAATGGCCGATGTG
*
87332815 ATGAATGTGAAA-GTGTATATA-TGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAACGTATATATAGTGTGATAAGGCCTAATGGCCGATGTG
87332862 ATGAATGTGA
1 ATGAATGTGA
87332872 CAGCCCAAAA
Statistics
Matches: 56, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
47 36 0.64
49 8 0.14
51 12 0.21
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
ATGAATGTGAAACGTATATATAGTGTGATAAGGCCTAATGGCCGATGTG
Found at i:87334636 original size:40 final size:40
Alignment explanation
Indices: 87334581--87334708 Score: 179
Period size: 40 Copynumber: 3.2 Consensus size: 40
87334571 TGAATGATAC
* * *
87334581 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
*
87334621 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* *
87334661 CCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
87334701 CC-GGCTAA
1 CCGGGCTAA
87334709 ATTCCGAAGA
Statistics
Matches: 79, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
39 8 0.10
40 68 0.86
41 3 0.04
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:87336248 original size:47 final size:47
Alignment explanation
Indices: 87336179--87336311 Score: 194
Period size: 47 Copynumber: 2.8 Consensus size: 47
87336169 TATTATCACA
* *
87336179 GCCGATGTGATGAATGTGAAAGTGTATATATGTGGTAAGGCCTAATG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
* *
87336226 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
* * * *
87336273 GCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
87336312 TCCCGAAGGG
Statistics
Matches: 77, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 77 1.00
ACGTcount: A:0.31, C:0.08, G:0.33, T:0.28
Consensus pattern (47 bp):
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
Found at i:87336480 original size:37 final size:37
Alignment explanation
Indices: 87336430--87336574 Score: 227
Period size: 37 Copynumber: 3.9 Consensus size: 37
87336420 CCGAGCTCTA
* *
87336430 AAGACCCGATGACTACGTGTGGAGAGTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
*
87336467 AAGACCCGATGACTACGTGTGGAGATTTTGCCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
*
87336504 AAGACCCGATGACTATGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* * *
87336541 AAGACCCGATAACTTCGTGTGGAGATTTCGTCCG
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCG
87336575 AGCTAAAGGT
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
Found at i:87339624 original size:37 final size:37
Alignment explanation
Indices: 87339574--87339652 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
87339564 TTATTACGAA
* *
87339574 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
* *
87339611 GTCTTACCCGGACAAAATTCCCACACGTAGTCATTGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
87339648 GTCTT
1 GTCTT
87339653 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:87339840 original size:47 final size:47
Alignment explanation
Indices: 87339771--87339977 Score: 333
Period size: 49 Copynumber: 4.3 Consensus size: 47
87339761 CCCTTCGGGA
* * * * *
87339771 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87339818 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87339865 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87339914 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87339963 CTTATCACATATATA
1 CTTATCACATATATA
87339978 TACACTTTAG
Statistics
Matches: 153, Mismatches: 5, Indels: 4
0.94 0.03 0.02
Matches are distributed among these distances:
47 57 0.37
49 96 0.63
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:87340108 original size:47 final size:47
Alignment explanation
Indices: 87340030--87340983 Score: 1665
Period size: 47 Copynumber: 20.2 Consensus size: 47
87340020 CCCTTCGGGA
* * * * * * * *
87340030 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
87340077 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
87340124 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
87340171 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
87340218 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
87340265 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
87340312 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
87340359 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
87340406 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
87340453 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
87340500 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
87340547 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
87340594 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
87340641 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
87340688 CTTATCGCACATATATACAGTTTCACATTCATCACATCGGCCATTAGGC
1 CTTAT--CACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
87340737 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
87340784 CTTATCACACATATACACTTTCACATTCATCACTTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
87340831 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
87340878 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
87340927 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
87340976 CTTATCAC
1 CTTATCAC
87340984 CATTTCATAT
Statistics
Matches: 878, Mismatches: 25, Indels: 6
0.97 0.03 0.01
Matches are distributed among these distances:
47 737 0.84
49 141 0.16
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:87346024 original size:40 final size:40
Alignment explanation
Indices: 87345979--87346170 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 40
87345969 ATAACCACAA
* *
87345979 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
87346019 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* * * * * * *
87346059 GCAGAAATGCCTTTGGGTCTTAGCCTGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * * * * *
87346099 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * *
87346139 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT
87346171 CATTCAAATG
Statistics
Matches: 137, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 132 0.96
41 4 0.03
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:87346835 original size:150 final size:150
Alignment explanation
Indices: 87346650--87346949 Score: 591
Period size: 150 Copynumber: 2.0 Consensus size: 150
87346640 TAATAGGACT
87346650 AGCTTAATACCCTGCATTTTCGAATTCATATATATCATTTAGTTCCTCATAACATACATTTGTCC
1 AGCTTAATACCCTGCATTTTCGAATTCATATATATCATTTAGTTCCTCATAACATACATTTGTCC
87346715 CTAACCAACACAAGAGCCCAAAGCATCACTTACAATGCCGAATTCCAATTAAGTCTACCATCATA
66 CTAACCAACACAAGAGCCCAAAGCATCACTTACAATGCCGAATTCCAATTAAGTCTACCATCATA
87346780 GCATTATCATATTTATGCAC
131 GCATTATCATATTTATGCAC
*
87346800 AGCTTAATACCTTGCATTTTCGAATTCATATATATCATTTAGTTCCTCATAACATACATTTGTCC
1 AGCTTAATACCCTGCATTTTCGAATTCATATATATCATTTAGTTCCTCATAACATACATTTGTCC
87346865 CTAACCAACACAAGAGCCCAAAGCATCACTTACAATGCCGAATTCCAATTAAGTCTACCATCATA
66 CTAACCAACACAAGAGCCCAAAGCATCACTTACAATGCCGAATTCCAATTAAGTCTACCATCATA
87346930 GCATTATCATATTTATGCAC
131 GCATTATCATATTTATGCAC
87346950 TTGGTAAGTT
Statistics
Matches: 149, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 149 1.00
ACGTcount: A:0.34, C:0.26, G:0.09, T:0.32
Consensus pattern (150 bp):
AGCTTAATACCCTGCATTTTCGAATTCATATATATCATTTAGTTCCTCATAACATACATTTGTCC
CTAACCAACACAAGAGCCCAAAGCATCACTTACAATGCCGAATTCCAATTAAGTCTACCATCATA
GCATTATCATATTTATGCAC
Found at i:87346985 original size:50 final size:50
Alignment explanation
Indices: 87346910--87347009 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
87346900 TGCCGAATTC
87346910 CAATTAAGTCTACCATCATAGCATTATCATATTTATGCACTTGGTAAGTT
1 CAATTAAGTCTACCATCATAGCATTATCATATTTATGCACTTGGTAAGTT
87346960 CAATTAAGTCTACCATCATAGCATTATCATATTTATGCACTTGGTAAGTT
1 CAATTAAGTCTACCATCATAGCATTATCATATTTATGCACTTGGTAAGTT
87347010 GCGTTTGGAC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (50 bp):
CAATTAAGTCTACCATCATAGCATTATCATATTTATGCACTTGGTAAGTT
Found at i:87354347 original size:40 final size:40
Alignment explanation
Indices: 87354302--87354493 Score: 199
Period size: 40 Copynumber: 4.8 Consensus size: 40
87354292 ATAACCACAA
* * *
87354302 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
87354342 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
87354382 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * * * *
87354422 GCATAAATGCCGTCGGGACTTAGGCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * *
87354462 GCATAAATACCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
87354494 CATTCAAATG
Statistics
Matches: 137, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 132 0.96
41 4 0.03
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:87354430 original size:80 final size:81
Alignment explanation
Indices: 87354282--87354492 Score: 223
Period size: 80 Copynumber: 2.6 Consensus size: 81
87354272 TCTTCGGAAT
* * * * * * * *
87354282 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAGCAACTCGCA
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAGCAACTAGCA
* *
87354345 CAAATGCCTTCGGGTC
66 CAAATGCCGTCGGGAC
* * *
87354361 TTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTAGC
1 TTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAGCAACTAGC
*
87354424 ATAAATGCCGTCGGGAC
65 ACAAATGCCGTCGGGAC
* * * *
87354441 TTAGGCCGGATAAAATCACTAGCATAAATACCTTCGGGACTTAGCCCGGATA
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATA
87354493 TCATTCAAAT
Statistics
Matches: 108, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
79 6 0.06
80 95 0.88
81 7 0.06
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (81 bp):
TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAGCAACTAGCA
CAAATGCCGTCGGGAC
Found at i:87357710 original size:68 final size:64
Alignment explanation
Indices: 87357593--87357845 Score: 162
Period size: 68 Copynumber: 3.9 Consensus size: 64
87357583 ATACAGATAG
* * * *
87357593 TATGTAGCTAGGTCACATGTATGATGCTGAGTGCACATCATGTGCACAAGAGAGCTACAAGACAT
1 TATGTAGCTAGGTCGCATGGATGATACTGAGTGCACACCATGTGCACAAGAGAGCTAC--GACA-
87357658 TA
63 TA
* * **
87357660 TGATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGCTACGGGA
1 T-ATGTAGCTAGGTCGCATGGATGATACTGA-GTGCACACCATGT-GCACAAGAGAGCTACGACA
87357723 TA
63 TA
* *
87357725 TATGTAGCTAGGTCGCATGCG-TGGCTCCAGGTGAAG-G-ACACCATGTAG-ACAAGAGAGCTAC
1 TATGTAGCTAGGTCGCATG-GAT-GAT--A-CTG-AGTGCACACCATGT-GCACAAGAGAGCTAC
*
87357786 GAGATA
59 GACATA
* * * * ** *
87357792 AAT-TGGCTAGGTCACATAGG-TGGTACTGAGTGTTCACCATGTGTACAAGAGAGC
1 TATGTAGCTAGGTCGCAT-GGATGATACTGAGTGCACACCATGTGCACAAGAGAGC
87357846 CGAACTATAT
Statistics
Matches: 155, Mismatches: 17, Indels: 32
0.76 0.08 0.16
Matches are distributed among these distances:
61 2 0.01
62 4 0.03
63 19 0.12
64 19 0.12
65 8 0.05
66 16 0.10
67 35 0.23
68 49 0.32
69 2 0.01
70 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (64 bp):
TATGTAGCTAGGTCGCATGGATGATACTGAGTGCACACCATGTGCACAAGAGAGCTACGACATA
Found at i:87368960 original size:43 final size:42
Alignment explanation
Indices: 87368801--87368966 Score: 154
Period size: 43 Copynumber: 3.9 Consensus size: 42
87368791 GATTACCAAG
* * *
87368801 ATGTGATTACATGTAAGACCATCTCTGAGACATTGGCATCTT
1 ATGTGATTACATGTAAGACCATATCTGGGACATTGGCATCAT
* * *
87368843 TTGTGGTTACATGTAAGACCATATTTGGGACATTGGCATCATT
1 ATGTGATTACATGTAAGACCATATCTGGGACATTGGCATCA-T
* * * * * * * * *
87368886 ATATGATTTCGTGTAAGATCTTGTCTAGGATAGTGGCATCGAT
1 ATGTGATTACATGTAAGACCATATCTGGGACATTGGCATC-AT
* *
87368929 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 ATGTGATTACATGTAAGACCATATCTGGGACATTGGCAT
87368967 TGTACGAGCT
Statistics
Matches: 96, Mismatches: 26, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
42 41 0.43
43 54 0.56
44 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.34
Consensus pattern (42 bp):
ATGTGATTACATGTAAGACCATATCTGGGACATTGGCATCAT
Found at i:87372124 original size:24 final size:24
Alignment explanation
Indices: 87372092--87372167 Score: 107
Period size: 24 Copynumber: 3.2 Consensus size: 24
87372082 ACACCTTCAT
* *
87372092 ATACATATACACATGAACAGATAC
1 ATACTTATACACATGAACACATAC
87372116 ATACTTATACACATGAACACATAC
1 ATACTTATACACATGAACACATAC
* * *
87372140 ATACTTATACATATAAACACATAT
1 ATACTTATACACATGAACACATAC
87372164 ATAC
1 ATAC
87372168 ATACCTTCCA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.49, C:0.21, G:0.04, T:0.26
Consensus pattern (24 bp):
ATACTTATACACATGAACACATAC
Found at i:87374985 original size:21 final size:21
Alignment explanation
Indices: 87374961--87375009 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 21
87374951 TTCAGTTTCT
87374961 CATTTTGGCACTTTTCTTTTG
1 CATTTTGGCACTTTTCTTTTG
***
87374982 CATTTTTTTTACTTTTCTTTTG
1 CA-TTTTGGCACTTTTCTTTTG
87375004 CATTTT
1 CATTTT
87375010 TTTCTCTCTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 6 0.25
22 18 0.75
ACGTcount: A:0.10, C:0.16, G:0.08, T:0.65
Consensus pattern (21 bp):
CATTTTGGCACTTTTCTTTTG
Found at i:87374995 original size:22 final size:22
Alignment explanation
Indices: 87374970--87375012 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
87374960 TCATTTTGGC
87374970 ACTTTTCTTTTGCATTTTTTTT
1 ACTTTTCTTTTGCATTTTTTTT
87374992 ACTTTTCTTTTGCATTTTTTT
1 ACTTTTCTTTTGCATTTTTTT
87375013 CTCTCTGGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.09, C:0.14, G:0.05, T:0.72
Consensus pattern (22 bp):
ACTTTTCTTTTGCATTTTTTTT
Found at i:87375009 original size:12 final size:12
Alignment explanation
Indices: 87374972--87375009 Score: 53
Period size: 11 Copynumber: 3.3 Consensus size: 12
87374962 ATTTTGGCAC
87374972 TTTTCTTTTGCA
1 TTTTCTTTTGCA
*
87374984 TTTT-TTTTAC-
1 TTTTCTTTTGCA
87374994 TTTTCTTTTGCA
1 TTTTCTTTTGCA
87375006 TTTT
1 TTTT
87375010 TTTCTCTCTG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
10 4 0.18
11 10 0.45
12 8 0.36
ACGTcount: A:0.08, C:0.13, G:0.05, T:0.74
Consensus pattern (12 bp):
TTTTCTTTTGCA
Found at i:87377425 original size:16 final size:17
Alignment explanation
Indices: 87377404--87377435 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
87377394 TAGTTAGAGT
87377404 AAACTG-AAACTGTAGG
1 AAACTGAAAACTGTAGG
87377420 AAACTGAAAACTGTAG
1 AAACTGAAAACTGTAG
87377436 TGGGACCTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.47, C:0.12, G:0.22, T:0.19
Consensus pattern (17 bp):
AAACTGAAAACTGTAGG
Found at i:87380389 original size:24 final size:25
Alignment explanation
Indices: 87380362--87380411 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
87380352 GTCCATTCCT
87380362 AGAA-TTAAATCAAATTCT-CCAAAA
1 AGAAGTTAAATCAAA-TCTGCCAAAA
**
87380386 AGAAGTTCCATCAAATCTGCCAAAA
1 AGAAGTTAAATCAAATCTGCCAAAA
87380411 A
1 A
87380412 TATAACTCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 7 0.32
25 15 0.68
ACGTcount: A:0.50, C:0.20, G:0.08, T:0.22
Consensus pattern (25 bp):
AGAAGTTAAATCAAATCTGCCAAAA
Found at i:87384343 original size:58 final size:58
Alignment explanation
Indices: 87384253--87384363 Score: 204
Period size: 58 Copynumber: 1.9 Consensus size: 58
87384243 CCAAAGCACG
87384253 TTGGATCTCCATTACGAGCGTCAACGACCCAATTTCGATAGGAGATGGATCACACGCA
1 TTGGATCTCCATTACGAGCGTCAACGACCCAATTTCGATAGGAGATGGATCACACGCA
* *
87384311 TTGGATCTCCATTACGAGCGTCAACGACCCAATTTTGGTAGGAGATGGATCAC
1 TTGGATCTCCATTACGAGCGTCAACGACCCAATTTCGATAGGAGATGGATCAC
87384364 GAGCCCAAAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
58 51 1.00
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.24
Consensus pattern (58 bp):
TTGGATCTCCATTACGAGCGTCAACGACCCAATTTCGATAGGAGATGGATCACACGCA
Found at i:87385736 original size:64 final size:64
Alignment explanation
Indices: 87385657--87385779 Score: 246
Period size: 64 Copynumber: 1.9 Consensus size: 64
87385647 TCTTCTCAAC
87385657 CCTCATGCATGTAATTAACCTCCCATGTACATGAACTTAATTTCCCCCAAGCATTGAACTAGGT
1 CCTCATGCATGTAATTAACCTCCCATGTACATGAACTTAATTTCCCCCAAGCATTGAACTAGGT
87385721 CCTCATGCATGTAATTAACCTCCCATGTACATGAACTTAATTTCCCCCAAGCATTGAAC
1 CCTCATGCATGTAATTAACCTCCCATGTACATGAACTTAATTTCCCCCAAGCATTGAAC
87385780 CAGGCCGTGC
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 59 1.00
ACGTcount: A:0.30, C:0.29, G:0.11, T:0.29
Consensus pattern (64 bp):
CCTCATGCATGTAATTAACCTCCCATGTACATGAACTTAATTTCCCCCAAGCATTGAACTAGGT
Found at i:87388687 original size:23 final size:23
Alignment explanation
Indices: 87388661--87388754 Score: 134
Period size: 23 Copynumber: 4.1 Consensus size: 23
87388651 AAGTTAGAAG
87388661 AGTGAAGAGACTTGAATATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* * *
87388684 AGTGAAAAAACTTGAATATGAAT
1 AGTGAAGAGACTTGAATATGAAA
*
87388707 AGTGAAGAGACTTGAAGATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* *
87388730 AGTTAAGAGGCTTGAATATGAAA
1 AGTGAAGAGACTTGAATATGAAA
87388753 AG
1 AG
87388755 ATACACACAT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.48, C:0.04, G:0.26, T:0.22
Consensus pattern (23 bp):
AGTGAAGAGACTTGAATATGAAA
Found at i:87393136 original size:23 final size:23
Alignment explanation
Indices: 87393110--87393203 Score: 134
Period size: 23 Copynumber: 4.1 Consensus size: 23
87393100 AAGTTAGAAG
87393110 AGTGAAGAGACTTGAATATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* * *
87393133 AGTGAAAAAACTTGAATATGAAT
1 AGTGAAGAGACTTGAATATGAAA
*
87393156 AGTGAAGAGACTTGAAGATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* *
87393179 AGTTAAGAGGCTTGAATATGAAA
1 AGTGAAGAGACTTGAATATGAAA
87393202 AG
1 AG
87393204 ATACACACAT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.48, C:0.04, G:0.26, T:0.22
Consensus pattern (23 bp):
AGTGAAGAGACTTGAATATGAAA
Found at i:87395708 original size:22 final size:22
Alignment explanation
Indices: 87395682--87395724 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
87395672 TTAAGGTAAA
*
87395682 ATCGAAAATATTCGATTAATTG
1 ATCGAAAAAATTCGATTAATTG
*
87395704 ATCGAAAAAATTCGGTTAATT
1 ATCGAAAAAATTCGATTAATT
87395725 AGTTGGTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.42, C:0.09, G:0.14, T:0.35
Consensus pattern (22 bp):
ATCGAAAAAATTCGATTAATTG
Found at i:87395990 original size:5 final size:6
Alignment explanation
Indices: 87395977--87396016 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
87395967 ATAATTTAAT
87395977 AAATAA AAATAA AAATCTAA AAAT-A AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAA
87396017 AACAAATGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
5 5 0.16
6 20 0.65
8 6 0.19
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:87395992 original size:31 final size:31
Alignment explanation
Indices: 87395954--87396016 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 31
87395944 CAACCCAGTC
* **
87395954 ATAAAAAT-TACAAATAATTTAATAAATAAAA
1 ATAAAAATCTAAAAATAAAATAA-AAATAAAA
87395985 ATAAAAATCTAAAAATAAAATAAAAATAAAA
1 ATAAAAATCTAAAAATAAAATAAAAATAAAA
87396016 A
1 A
87396017 AACAAATGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 17 0.61
32 11 0.39
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (31 bp):
ATAAAAATCTAAAAATAAAATAAAAATAAAA
Found at i:87396017 original size:19 final size:20
Alignment explanation
Indices: 87395977--87396018 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
87395967 ATAATTTAAT
**
87395977 AAATAAAAATAAAAATCTAA
1 AAATAAAAATAAAAATAAAA
87395997 AAAT-AAAATAAAAATAAAA
1 AAATAAAAATAAAAATAAAA
87396016 AAA
1 AAA
87396019 CAAATGATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.17
Consensus pattern (20 bp):
AAATAAAAATAAAAATAAAA
Found at i:87396060 original size:18 final size:18
Alignment explanation
Indices: 87396037--87396087 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
87396027 TTTATACAAA
*
87396037 TAATTCAGTTAATTCGAG
1 TAATTCGGTTAATTCGAG
* *
87396055 TAATTCGGGTAATTCGAT
1 TAATTCGGTTAATTCGAG
87396073 TAATTCGGTTAATTC
1 TAATTCGGTTAATTC
87396088 TATATTTATT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.29, C:0.12, G:0.18, T:0.41
Consensus pattern (18 bp):
TAATTCGGTTAATTCGAG
Found at i:87396359 original size:75 final size:75
Alignment explanation
Indices: 87396236--87396760 Score: 1041
Period size: 75 Copynumber: 7.0 Consensus size: 75
87396226 GTTAACCGGT
*
87396236 CGGTTAACCGACTGAACACCCTTACTTGTATGATAATAACATTTTATAAAATTTTTATTCCTCAA
1 CGGTTAACCGACTGAACACCCATACTTGTATGATAATAACATTTTATAAAATTTTTATTCCTCAA
87396301 AATTTTCTAC
66 AATTTTCTAC
87396311 CGGTTAACCGACTGAACACCCATACTTGTATGATAATAACATTTTATAAAATTTTTATTCCTCAA
1 CGGTTAACCGACTGAACACCCATACTTGTATGATAATAACATTTTATAAAATTTTTATTCCTCAA
87396376 AATTTTCTAC
66 AATTTTCTAC
87396386 CGGTTAACCGACTGAACACCCATACTTGTATGATAATAACATTTTATAAAATTTTTATTCCTCAA
1 CGGTTAACCGACTGAACACCCATACTTGTATGATAATAACATTTTATAAAATTTTTATTCCTCAA
87396451 AATTTTCTAC
66 AATTTTCTAC
87396461 CGGTTAACCGACTGAACACCCATACTTGTATGATAATAACATTTTATAAAATTTTTATTCCTCAA
1 CGGTTAACCGACTGAACACCCATACTTGTATGATAATAACATTTTATAAAATTTTTATTCCTCAA
87396526 AATTTTCTAC
66 AATTTTCTAC
87396536 CGGTTAACCGACTGAACACCCATACTTGTATGATAATAACATTTTATAAAATTTTTATTCCTCAA
1 CGGTTAACCGACTGAACACCCATACTTGTATGATAATAACATTTTATAAAATTTTTATTCCTCAA
87396601 AATTTTCTAC
66 AATTTTCTAC
87396611 CGGTTAACCGACTGAACACCCATACTTGTATGATAATAACATTTTATAAAATTTTTATTCCTCAA
1 CGGTTAACCGACTGAACACCCATACTTGTATGATAATAACATTTTATAAAATTTTTATTCCTCAA
87396676 AATTTTCTAC
66 AATTTTCTAC
87396686 CGGTTAACCGACTGAACACCCATACTTGTATGATAATAACATTTTATAAAATTTTTATTCCTCAA
1 CGGTTAACCGACTGAACACCCATACTTGTATGATAATAACATTTTATAAAATTTTTATTCCTCAA
87396751 AATTTTCTAC
66 AATTTTCTAC
87396761 TTTCTTACTC
Statistics
Matches: 449, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 449 1.00
ACGTcount: A:0.34, C:0.20, G:0.08, T:0.38
Consensus pattern (75 bp):
CGGTTAACCGACTGAACACCCATACTTGTATGATAATAACATTTTATAAAATTTTTATTCCTCAA
AATTTTCTAC
Found at i:87398609 original size:46 final size:47
Alignment explanation
Indices: 87398430--87398693 Score: 192
Period size: 47 Copynumber: 5.7 Consensus size: 47
87398420 TTTGTATGCT
* * * * **
87398430 AGTGTAAGA-TATGTCTGGAACAT-GCATCAGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACAAGATGA-AGCC
* * ** * *
87398476 AGTGTAAGACCATGTTTGGGACATGGTATCGGC-ATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTA-CAAGATGA-AGCC
* *
87398524 AGTGTAAGA-AATGTCTGGGACATGTGC--CGGCCT-CGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATG-GCATCGG-CTACAAGATG-AAGCC
* *
87398570 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACAAGATG-TGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACAAGATGAAGCC
* * **
87398614 AGTGTAAGACCATGTCTGGGGCATGGCATCGAGTTGA-TGGATG-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCG-GCT-ACAAGATGAAGCC
87398661 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
87398694 ATTATACCCT
Statistics
Matches: 175, Mismatches: 29, Indels: 28
0.75 0.12 0.12
Matches are distributed among these distances:
44 13 0.07
45 15 0.09
46 58 0.33
47 65 0.37
48 24 0.14
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACAAGATGAAGCC
Found at i:87403209 original size:126 final size:126
Alignment explanation
Indices: 87403016--87403322 Score: 472
Period size: 126 Copynumber: 2.4 Consensus size: 126
87403006 TATTTGGTCC
* * * ** *
87403016 AACGAAAAACCCAAACCCAACACGTTAGGGCATAATTTCTCGGATTTCCAAACATAGAACATTGC
1 AACGAAAAACCGAATCCCAGCACGTTAGGGCACGATTTCTCGAATTTCCAAACATAGAACATTGC
*
87403081 CTTGTTTTGAAGTTTTGAAAACACAGACGAAATTTTAAAGGGATATTTGGTTATTTAGACA
66 CTTGTTTTGAAGTTTTGAAAACACAGACGAAAGTTTAAAGGGATATTTGGTTATTTAGACA
* *
87403142 AAC-AGAAAATCGAATCCCAGCACGTTAGGGCACGATTTCTCGAATTTCTAAACATAGAACATTG
1 AACGA-AAAACCGAATCCCAGCACGTTAGGGCACGATTTCTCGAATTTCCAAACATAGAACATTG
* * * * *
87403206 CCTTGTTTTGAAGTTTTGAAGACACAGACGAGAGTTTAATGGGGTATTTGGTTATTTGGACA
65 CCTTGTTTTGAAGTTTTGAAAACACAGACGAAAGTTTAAAGGGATATTTGGTTATTTAGACA
87403268 AACGAAAAACCGAATCCCAGCACGTTAGGGCACGATTTCTCGAATTTCCAAACAT
1 AACGAAAAACCGAATCCCAGCACGTTAGGGCACGATTTCTCGAATTTCCAAACAT
87403323 CAAACAATAT
Statistics
Matches: 163, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
125 1 0.01
126 161 0.99
127 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.28
Consensus pattern (126 bp):
AACGAAAAACCGAATCCCAGCACGTTAGGGCACGATTTCTCGAATTTCCAAACATAGAACATTGC
CTTGTTTTGAAGTTTTGAAAACACAGACGAAAGTTTAAAGGGATATTTGGTTATTTAGACA
Found at i:87406785 original size:126 final size:126
Alignment explanation
Indices: 87406589--87406913 Score: 447
Period size: 126 Copynumber: 2.6 Consensus size: 126
87406579 TTATTTGTCC
* * * *
87406589 AACGAAAAATCGAAA-CCCAACATGTTAGGGCACAATTTCTCGGATTTTCAAACATAAAACATTG
1 AACGAAAAATC-AAATCCCAACACGTTAGGGCACAATTTCTCGAATTTCCAAACATAAAACATTA
*
87406653 CTTTGTTTAAAAGTTTTGAAAACACAGATGAAATTTTAAAGGGATATTTGGTTATTTGGACA
65 CCTTGTTTAAAAGTTTTGAAAACACAGATGAAATTTTAAAGGGATATTTGGTTATTTGGACA
* * *
87406715 AACGGAAAATCAAATCCCAGCACGTTAGGGCACAATTTCTCAAATTTCCAAACATAGAAA-ATTA
1 AACGAAAAATCAAATCCCAACACGTTAGGGCACAATTTCTCGAATTTCCAAACATA-AAACATTA
** * * *
87406779 CCTTGTTTTGAAGTTTTGAAAGCACGGATGAAATTTTAAAGGGGTATTTGGTTATTTGGACA
65 CCTTGTTTAAAAGTTTTGAAAACACAGATGAAATTTTAAAGGGATATTTGGTTATTTGGACA
** * * *
87406841 AACGAAAAATTGAATCCCAACACGTTAGGGCACGATTTCTCGAATTTCCAAACATCAAACATTGC
1 AACGAAAAATCAAATCCCAACACGTTAGGGCACAATTTCTCGAATTTCCAAACATAAAACATTAC
87406906 CTTTGTTT
66 C-TTGTTT
87406914 TGAAATTTTT
Statistics
Matches: 174, Mismatches: 21, Indels: 7
0.86 0.10 0.03
Matches are distributed among these distances:
125 6 0.03
126 159 0.91
127 9 0.05
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.30
Consensus pattern (126 bp):
AACGAAAAATCAAATCCCAACACGTTAGGGCACAATTTCTCGAATTTCCAAACATAAAACATTAC
CTTGTTTAAAAGTTTTGAAAACACAGATGAAATTTTAAAGGGATATTTGGTTATTTGGACA
Found at i:87417220 original size:25 final size:25
Alignment explanation
Indices: 87417192--87417273 Score: 87
Period size: 25 Copynumber: 3.3 Consensus size: 25
87417182 TAGCTCTTAT
* *
87417192 GAGCATCCTATTATATGGCTCTCAC
1 GAGCTTCCAATTATATGGCTCTCAC
*
87417217 GAGCTTCCCAA-TATTTGGCTCTCAC
1 GAGCTT-CCAATTATATGGCTCTCAC
**
87417242 GAGCTTTCCAATTA-ATGGCTCTCTT
1 GAGC-TTCCAATTATATGGCTCTCAC
87417267 GAGCTTC
1 GAGCTTC
87417274 TCGTTTATGG
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
24 3 0.06
25 38 0.79
26 7 0.15
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (25 bp):
GAGCTTCCAATTATATGGCTCTCAC
Found at i:87418897 original size:35 final size:35
Alignment explanation
Indices: 87418851--87418922 Score: 117
Period size: 35 Copynumber: 2.1 Consensus size: 35
87418841 CCCTACATAC
* *
87418851 CATGTGAGGATAAAGTCGACCCGCTCAACCCTACA
1 CATGTGAGGATAAAGTCGACCCACCCAACCCTACA
*
87418886 CATGTGGGGATAAAGTCGACCCACCCAACCCTACA
1 CATGTGAGGATAAAGTCGACCCACCCAACCCTACA
87418921 CA
1 CA
87418923 CCAAGTCATA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.32, C:0.33, G:0.19, T:0.15
Consensus pattern (35 bp):
CATGTGAGGATAAAGTCGACCCACCCAACCCTACA
Found at i:87419538 original size:16 final size:16
Alignment explanation
Indices: 87419517--87419555 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 16
87419507 AGAACCCATA
87419517 TTTCAGCTTTTC-ACCT
1 TTTCAGCTTTTCGA-CT
87419533 TTTCAGCTTTTCGACT
1 TTTCAGCTTTTCGACT
87419549 TTTCAGC
1 TTTCAGC
87419556 CTTTGTCATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 21 0.95
17 1 0.05
ACGTcount: A:0.13, C:0.28, G:0.10, T:0.49
Consensus pattern (16 bp):
TTTCAGCTTTTCGACT
Found at i:87427321 original size:16 final size:16
Alignment explanation
Indices: 87427300--87428172 Score: 1687
Period size: 16 Copynumber: 54.6 Consensus size: 16
87427290 GTATTCGGGC
87427300 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427316 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427332 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427348 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427364 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427380 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427396 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427412 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427428 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427444 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427460 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427476 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427492 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427508 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427524 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427540 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427556 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427572 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427588 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427604 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427620 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427636 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427652 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427668 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427684 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427700 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427716 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427732 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427748 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427764 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427780 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427796 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427812 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427828 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427844 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427860 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427876 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427892 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427908 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427924 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427940 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427956 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427972 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87427988 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87428004 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87428020 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87428036 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87428052 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87428068 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87428084 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87428100 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
87428116 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
* * *
87428132 CTTTGTG--TATTCGGG
1 CTTCGTGCCTA-GCAGG
87428147 CCTTCGTGCCTAGCAGG
1 -CTTCGTGCCTAGCAGG
87428164 CTTCGTGCC
1 CTTCGTGCC
87428173 GGTAATGTGT
Statistics
Matches: 847, Mismatches: 6, Indels: 8
0.98 0.01 0.01
Matches are distributed among these distances:
14 2 0.00
15 3 0.00
16 837 0.99
17 3 0.00
18 2 0.00
ACGTcount: A:0.12, C:0.31, G:0.31, T:0.25
Consensus pattern (16 bp):
CTTCGTGCCTAGCAGG
Found at i:87428196 original size:43 final size:42
Alignment explanation
Indices: 87428100--87428243 Score: 180
Period size: 43 Copynumber: 3.2 Consensus size: 42
87428090 GCCTAGCAGG
*
87428100 CTTCGTGCCTAGCAGGCTTCGTGCCTAGCAGGCTTTGTGTATTCGGGC
1 CTTCGTGCCTAGCAGGCTTCGTG-C---C-GG-TATGTGTATTCGGGC
87428148 CTTCGTGCCTAGCAGGCTTCGTGCCGGTAATGTGTATTCGGGC
1 CTTCGTGCCTAGCAGGCTTCGTGCCGGT-ATGTGTATTCGGGC
* * *
87428191 CTTCGTGTCTAGCAGGCTTCGTACTGGTGATGTGTATTCGGGC
1 CTTCGTGCCTAGCAGGCTTCGTGCCGGT-ATGTGTATTCGGGC
87428234 CTTCGTGCCT
1 CTTCGTGCCT
87428244 TCGTGCCTAG
Statistics
Matches: 89, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
42 1 0.01
43 63 0.71
44 1 0.01
47 1 0.01
48 23 0.26
ACGTcount: A:0.10, C:0.26, G:0.31, T:0.33
Consensus pattern (42 bp):
CTTCGTGCCTAGCAGGCTTCGTGCCGGTATGTGTATTCGGGC
Found at i:87428289 original size:45 final size:45
Alignment explanation
Indices: 87428234--87428352 Score: 148
Period size: 45 Copynumber: 2.6 Consensus size: 45
87428224 GTATTCGGGC
* * * *
87428234 CTTCGTGCCTTCGTGCCTAGCATGCTATGATGCCGGTGAAATACT
1 CTTCGAGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATACT
* * * *
87428279 CTTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGATACT
1 CTTCGAGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATACT
* *
87428324 ATTCGAGCTTTCGAGCCTAGCAGGCTATA
1 CTTCGAGCCTTCGAGCCTAGCAGGCTATA
87428353 GTACCAGTGA
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 63 1.00
ACGTcount: A:0.20, C:0.24, G:0.26, T:0.29
Consensus pattern (45 bp):
CTTCGAGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATACT
Found at i:87432361 original size:16 final size:16
Alignment explanation
Indices: 87432336--87432374 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
87432326 ACAACCCACG
*
87432336 TTTT-GGCTTTTCACC
1 TTTTCGGCTTTTCAAC
87432351 TTTTCGGCTTTTCAAC
1 TTTTCGGCTTTTCAAC
87432367 TTTTCGGC
1 TTTTCGGC
87432375 CTTTGTCATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 4 0.18
16 18 0.82
ACGTcount: A:0.08, C:0.26, G:0.15, T:0.51
Consensus pattern (16 bp):
TTTTCGGCTTTTCAAC
Found at i:87433074 original size:34 final size:34
Alignment explanation
Indices: 87433035--87433100 Score: 123
Period size: 34 Copynumber: 1.9 Consensus size: 34
87433025 GATATGAGGC
*
87433035 TCGACAAATGAAGGAGGGAAAGAGATCGATGGGG
1 TCGACAAATGAAGGAGGAAAAGAGATCGATGGGG
87433069 TCGACAAATGAAGGAGGAAAAGAGATCGATGG
1 TCGACAAATGAAGGAGGAAAAGAGATCGATGG
87433101 AATCAAAGCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.41, C:0.09, G:0.38, T:0.12
Consensus pattern (34 bp):
TCGACAAATGAAGGAGGAAAAGAGATCGATGGGG
Found at i:87437404 original size:39 final size:39
Alignment explanation
Indices: 87437286--87437466 Score: 179
Period size: 40 Copynumber: 4.6 Consensus size: 39
87437276 GCTACTCGTT
* * *
87437286 CAAATGCCTTCGGGACATAGCCCGATTATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCGGATT-TAGTAACTCGCA
*
87437326 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTT-AGCCGGATTTAGTAACTCGCA
* * *
87437366 CCAATGCCTTCGGG-CTTAGCACGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGC-CGGATTTAGTAACTCGCA
* * * * *
87437405 CAAATGCCTTC-GGATCTTAGTCCGAATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAG-CCGGATTTAGTAAC-TCGCA
87437446 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
87437467 CGGACATCAT
Statistics
Matches: 118, Mismatches: 16, Indels: 15
0.79 0.11 0.10
Matches are distributed among these distances:
38 4 0.03
39 31 0.26
40 64 0.54
41 19 0.16
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCGGATTTAGTAACTCGCA
Found at i:87444790 original size:40 final size:40
Alignment explanation
Indices: 87444746--87444929 Score: 180
Period size: 40 Copynumber: 4.6 Consensus size: 40
87444736 GCTACTCGTT
* * *
87444746 CAAATGCCTTTGGGACATAGCCCGGTTATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
87444786 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * *
87444826 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
87444865 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
*
87444906 CCAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
87444930 ACATCATTCG
Statistics
Matches: 119, Mismatches: 17, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 74 0.62
41 13 0.11
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:87444849 original size:79 final size:81
Alignment explanation
Indices: 87444748--87444930 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
87444738 TACTCGTTCA
* * * *
87444748 AATGCCTTTGGGACATAGCCCGG-TTATAGTAACTCGTACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
87444811 ATTTAGTAAC-TCGCACC
64 ATATAGTAACTTAGCACC
* **
87444828 AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
* *
87444892 ATGGTCACTTAGCACC
66 ATAGTAACTTAGCACC
87444908 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
87444931 CATCATTCGA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.61
80 31 0.35
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCACC
Found at i:87447601 original size:20 final size:20
Alignment explanation
Indices: 87447560--87447599 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
87447550 GGCATGATAG
87447560 ATTCGACCATTATACAAAAAT
1 ATTCGACCATTATA-AAAAAT
87447581 ATTCGACCATTACTAAAAA
1 ATTCGACCATTA-TAAAAA
87447600 TAAAAGGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.47, C:0.20, G:0.05, T:0.28
Consensus pattern (20 bp):
ATTCGACCATTATAAAAAAT
Found at i:87460952 original size:6 final size:6
Alignment explanation
Indices: 87460941--87460999 Score: 54
Period size: 6 Copynumber: 10.2 Consensus size: 6
87460931 GGGATCACTA
* *
87460941 ACTAAT ACTAAT -CTAAT ACTAAT A-GAAT A-GAAT ACTAAT -CTAAT
1 ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT
87460985 ACTCTAAT ACTAAT A
1 A--CTAAT ACTAAT A
87461000 GAATAGAAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
5 19 0.41
6 21 0.46
8 6 0.13
ACGTcount: A:0.49, C:0.15, G:0.03, T:0.32
Consensus pattern (6 bp):
ACTAAT
Found at i:87461013 original size:14 final size:14
Alignment explanation
Indices: 87460996--87461023 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
87460986 CTCTAATACT
87460996 AATAGAATAGAAAA
1 AATAGAATAGAAAA
87461010 AATAGAATAGAAAA
1 AATAGAATAGAAAA
87461024 TACTAATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (14 bp):
AATAGAATAGAAAA
Found at i:87461533 original size:5 final size:5
Alignment explanation
Indices: 87461525--87461549 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
87461515 GATGGAAGGG
87461525 AATAA AATAA AATAA AATAA AATAA
1 AATAA AATAA AATAA AATAA AATAA
87461550 GAAATCAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AATAA
Found at i:87464892 original size:29 final size:29
Alignment explanation
Indices: 87464829--87464896 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
87464819 TAATCAACCG
87464829 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
87464858 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
87464887 CGCACACTTA
1 CGCACACTTA
87464897 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:87465009 original size:174 final size:174
Alignment explanation
Indices: 87464718--87465045 Score: 593
Period size: 174 Copynumber: 1.9 Consensus size: 174
87464708 AACTCAAGGT
* *
87464718 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
87464783 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
87464848 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAAATCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
87464892 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
87464957 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
87465022 ACTTTAAAATCGCACACTTAGTGC
131 ACTTTAAAATCACACACTTAGTGC
87465046 TGTACAATTT
Statistics
Matches: 147, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 147 1.00
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAAATCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:87465037 original size:29 final size:30
Alignment explanation
Indices: 87465003--87465076 Score: 100
Period size: 29 Copynumber: 2.5 Consensus size: 30
87464993 TAATCAACCA
*
87465003 CGCACACTTAGTGCCATGTAC-TTTAAAAT
1 CGCACACTTAGTGCCATGTACATTTAAAAC
*
87465032 CGCACACTTAGTG-C-TGTACAATTTAAACC
1 CGCACACTTAGTGCCATGTAC-ATTTAAAAC
87465061 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
87465077 ATCTCATGAC
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.13
28 1 0.03
29 32 0.82
30 1 0.03
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (30 bp):
CGCACACTTAGTGCCATGTACATTTAAAAC
Done.