Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 269 of 276
Found at i:89108883 original size:46 final size:46
Alignment explanation
Indices: 89108833--89109419 Score: 420
Period size: 46 Copynumber: 12.7 Consensus size: 46
89108823 GGCATTCGAA
* * *
89108833 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAATGTCTGAA
1 CTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGAGAATGTCCGAG
*** * *
89108879 CTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTAACT-AGGCA--TCCGAG
1 CTCGTTGAGTTGAGTCTGAGTTC-ACTTATG-GA-TGA-GAATGTCCGAG
* *
89108926 CTCGTTGAGTTGAGTCTGAGTTCACTTCTGGAT-ACG-ATCGCCCGAG
1 CTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGA-GAAT-GTCCGAG
* ** *
89108972 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGGCGGGTTACATG---GTAG
1 CTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGAG--A-ATGTCCG-AG
* *** * *
89109019 CT--TGGCAGTTGAGTCTGAGTTCGAGAGATGTAACT-AGGCA--TCCGAG
1 CTCGTTG-AGTTGAGTCTGAGTTC-ACTTATG-GA-TGA-GAATGTCCGAG
* * *
89109065 CTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAG
1 CTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGAGAATGTCCGAG
* * *
89109111 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAATGTCTGAA
1 CTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGAGAATGTCCGAG
*** * *
89109157 CTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTAACT-AGGCA--TCCGAG
1 CTCGTTGAGTTGAGTCTGAGTTC-ACTTATG-GA-TGA-GAATGTCCGAG
* * *
89109204 CTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAG
1 CTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGAGAATGTCCGAG
* * *
89109250 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAATGTCTGAA
1 CTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGAGAATGTCCGAG
*** * *
89109296 CTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTAACT-AGGCA--TCCGAG
1 CTCGTTGAGTTGAGTCTGAGTTC-ACTTATG-GA-TGA-GAATGTCCGAG
* * *
89109343 CTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAG
1 CTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGAGAATGTCCGAG
*
89109389 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CTCGTTGAGTTGAGTCTGAGTTCACTTATGG
89109420 GCGGGTTACA
Statistics
Matches: 420, Mismatches: 81, Indels: 80
0.72 0.14 0.14
Matches are distributed among these distances:
43 1 0.00
44 12 0.03
45 6 0.01
46 262 0.62
47 118 0.28
48 8 0.02
49 11 0.03
50 2 0.00
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.30
Consensus pattern (46 bp):
CTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGAGAATGTCCGAG
Found at i:89108982 original size:93 final size:91
Alignment explanation
Indices: 89108823--89109419 Score: 353
Period size: 93 Copynumber: 6.5 Consensus size: 91
89108813 AGGATATTTG
* * * * * *
89108823 GGCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGA-GAATGTCTGAACTCGTTGA
1 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGAT-ACG-ATGCCCGAGCTCGTTGA
*
89108887 GTTGAGTCTGAGTTCGAGAGATGTAACTA
64 GTTGAGTCTGAGTTC-ACAGATGTAACTA
*
89108916 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTCTGGATACGATCGCCCGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAT-GCCCGAGCTCGTTGAG
* ** ** *
89108981 TTGAGTCCGAGTTCACTTATG-GGC-G
65 TTGAGTCTGAGTTCACAGATGTAACTA
* * *** * * *
89109006 GGTTACAT-GGTAGCT--TGGCAGTTGAGTCTGAGTTCGAGAGATGTA-ACTAGGCATCCGAGCT
1 GG---CATCCG-AGCTCGTTG-AGTTGAGTCTGAGTTC-ACTTATGGATACGATGC--CCGAGCT
** * * *
89109067 CGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAA
58 CGTTGAGTTGAGTCTGAGTTCACAGATGTA-AC-TA
* * * * *
89109103 CGC--CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGA-GAATGTCTGAACTCGTTGA
1 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGAT-ACG-ATGCCCGAGCTCGTTGA
*
89109165 GTTGAGTCTGAGTTCGAGAGATGTAACTA
64 GTTGAGTCTGAGTTC-ACAGATGTAACTA
* *
89109194 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACG-ATGCCCGAGCTCGTTGAG
* ** *
89109259 TTGAGTCCGAGTTCACTTATG-GA-T-
65 TTGAGTCTGAGTTCACAGATGTAACTA
* * * *** * * *
89109283 GAGAATGTCTGAACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTA-ACTAGGCATCCGAGCTCG
1 G-GCA--TCCGAGCTCGTTGAGTTGAGTCTGAGTTC-ACTTATGGATACGATGC--CCGAGCTCG
** * * *
89109347 TTGAGTTGAGTCTGAGTTCACTTATGGATGCGAA
60 TTGAGTTGAGTCTGAGTTCACAGATGTA-AC-TA
* *
89109381 CGC--CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
89109420 GCGGGTTACA
Statistics
Matches: 389, Mismatches: 80, Indels: 71
0.72 0.15 0.13
Matches are distributed among these distances:
89 1 0.00
90 5 0.01
91 12 0.03
92 99 0.25
93 262 0.67
94 6 0.02
95 2 0.01
97 2 0.01
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.30
Consensus pattern (91 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGATGCCCGAGCTCGTTGAGT
TGAGTCTGAGTTCACAGATGTAACTA
Found at i:89109058 original size:139 final size:138
Alignment explanation
Indices: 89108833--89109419 Score: 973
Period size: 139 Copynumber: 4.2 Consensus size: 138
89108823 GGCATTCGAA
* *
89108833 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAATGTCTGAACTCGTTGAGTTGAGTCTGA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGAGAATGTCTGAACTC-TGGAGTTGAGTCTGA
* *
89108898 GTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTCTGGATACGA
65 GTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGA
*
89108963 TCGCCCGAG
130 ACGCCCGAG
* * * *
89108972 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGGCGGGTTACATG-GT-AGCT-TGGCAGTTGAGTC
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGAG--A-ATGTCTGAACTCTGG-AGTTGAGTC
89109034 TGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATG
62 TGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATG
89109099 CGAACGCCCGAG
127 CGAACGCCCGAG
* *
89109111 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAATGTCTGAACTCGTTGAGTTGAGTCTGA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGAGAATGTCTGAACTC-TGGAGTTGAGTCTGA
89109176 GTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGA
65 GTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGA
89109241 ACGCCCGAG
130 ACGCCCGAG
* *
89109250 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAATGTCTGAACTCGTTGAGTTGAGTCTGA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGAGAATGTCTGAACTC-TGGAGTTGAGTCTGA
89109315 GTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGA
65 GTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGA
89109380 ACGCCCGAG
130 ACGCCCGAG
89109389 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
89109420 GCGGGTTACA
Statistics
Matches: 425, Mismatches: 15, Indels: 16
0.93 0.03 0.04
Matches are distributed among these distances:
136 3 0.01
137 2 0.00
138 5 0.01
139 405 0.95
140 5 0.01
141 2 0.00
142 3 0.01
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.30
Consensus pattern (138 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGAGAATGTCTGAACTCTGGAGTTGAGTCTGAG
TTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAA
CGCCCGAG
Found at i:89114918 original size:93 final size:92
Alignment explanation
Indices: 89114759--89115210 Score: 409
Period size: 93 Copynumber: 4.9 Consensus size: 92
89114749 AGGATATTTG
* * * * * *
89114759 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
*
89114824 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTC-ACAGATGTAACTA
89114852 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
** ** *
89114917 TTGAGTCCGAGTTCACTTATG-GGC-G
66 TTGAGTCCGAGTTCACAGATGTAACTA
* * *** * * * *
89114942 GGTTACAT-GGTAGCT--TGGCAGTTGAGTCTGAGTTCGAGAGATGTA-AC-TAGGCATCCGAGC
1 GG---CATCCG-AGCTCGTTG-AGTTGAGTCTGAGTTC-ACTTATGGATGCGAACGC--CCGAGC
* ** * * *
89115002 TCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAA
58 TCGTTGAGTTGAGTCCGAGTTCACAGATGTA-AC-TA
* * * * * * *
89115039 CGC--CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAATGTCTGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
* *
89115102 TTGAGTCTGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTC-ACAGATGTAACTA
89115130 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
89115195 TTGAGTCCGAGTTCAC
66 TTGAGTCCGAGTTCAC
89115211 TTATGGATGA
Statistics
Matches: 285, Mismatches: 54, Indels: 41
0.75 0.14 0.11
Matches are distributed among these distances:
90 2 0.01
91 9 0.03
92 59 0.21
93 207 0.73
94 5 0.02
95 2 0.01
97 1 0.00
ACGTcount: A:0.21, C:0.20, G:0.31, T:0.28
Consensus pattern (92 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
TTGAGTCCGAGTTCACAGATGTAACTA
Found at i:89114994 original size:139 final size:138
Alignment explanation
Indices: 89114764--89115355 Score: 965
Period size: 139 Copynumber: 4.3 Consensus size: 138
89114754 ATTTGGGCAT
* * * * * *
89114764 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTCCGAACTCGTTGAGTTGAG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGAGAATGTCTGAACTC-TGGAGTTGAG
*
89114829 TCCGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGA
65 TCTGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGA
89114894 TGCGAACGC
130 TGCGAACGC
* * * *
89114903 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGGCGGGTTACATG-GT-AGCT-TGGCAGTT
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGAG--A-ATGTCTGAACTCTGG-AGTT
89114965 GAGTCTGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTAT
62 GAGTCTGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTAT
89115030 GGATGCGAACGC
127 GGATGCGAACGC
* *
89115042 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAATGTCTGAACTCGTTGAGTTGAG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGAGAATGTCTGAACTC-TGGAGTTGAG
89115107 TCTGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGA
65 TCTGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGA
89115172 TGCGAACGC
130 TGCGAACGC
* *
89115181 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAATGTCTGAACTCGTTGAGTTGAG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGAGAATGTCTGAACTC-TGGAGTTGAG
89115246 TCTGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGA
65 TCTGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGA
89115311 TGCGAACGC
130 TGCGAACGC
89115320 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
89115356 GCGGGTTACA
Statistics
Matches: 429, Mismatches: 16, Indels: 16
0.93 0.03 0.03
Matches are distributed among these distances:
136 3 0.01
137 2 0.00
138 5 0.01
139 410 0.96
140 5 0.01
141 1 0.00
142 3 0.01
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.29
Consensus pattern (138 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGAGAATGTCTGAACTCTGGAGTTGAGT
CTGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGAT
GCGAACGC
Found at i:89115278 original size:93 final size:92
Alignment explanation
Indices: 89114961--89115349 Score: 369
Period size: 93 Copynumber: 4.2 Consensus size: 92
89114951 GTAGCTTGGC
*
89114961 AGTTGAGTCTGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCAC
1 AGTTGAGTCTGAGTTC-ACAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCAC
*
89115026 TTATGGATGCGAACGCCCGAGCTCGTTG
65 TTATGGATGAGAACGCCCGAGCTCGTTG
* ** * * * *
89115054 AGTTGAGTCCGAGTTCACTTATG-GA-T-GAGAATGTCTGAACTCGTTGAGTTGAGTCTGAGTTC
1 AGTTGAGTCTGAGTTCACAGATGTAACTAG-GCA--TCCGAGCTCGTTGAGTTGAGTCTGAGTTC
*** * * **
89115116 GAGAGATGTAACT-AG-GCATCCGAGCTCGTTG
63 -ACTTATG-GA-TGAGAACGCCCGAGCTCGTTG
** * * * * *
89115147 AGTTGAGTCTGAGTTCACTTATGGATGCGAACGC--CCGAGCTCGTTGAGTTGAGTCCGAGTTCA
1 AGTTGAGTCTGAGTTCACAGATGTA-AC-TAGGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCA
* * * *
89115210 CTTATGGATGAGAATGTCTGAACTCGTTG
64 CTTATGGATGAGAACGCCCGAGCTCGTTG
*
89115239 AGTTGAGTCTGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCAC
1 AGTTGAGTCTGAGTTC-ACAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCAC
*
89115304 TTATGGATGCGAACGCCCGAGCTCGTTG
65 TTATGGATGAGAACGCCCGAGCTCGTTG
*
89115332 AGTTGAGTCCGAGTTCAC
1 AGTTGAGTCTGAGTTCAC
89115350 TTATGGGCGG
Statistics
Matches: 231, Mismatches: 49, Indels: 33
0.74 0.16 0.11
Matches are distributed among these distances:
89 1 0.00
90 4 0.02
91 7 0.03
92 64 0.28
93 151 0.65
94 2 0.01
95 1 0.00
97 1 0.00
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (92 bp):
AGTTGAGTCTGAGTTCACAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACT
TATGGATGAGAACGCCCGAGCTCGTTG
Found at i:89116199 original size:185 final size:185
Alignment explanation
Indices: 89115887--89116254 Score: 709
Period size: 185 Copynumber: 2.0 Consensus size: 185
89115877 ATGGAAATTC
*
89115887 TTGGTAATTATTAGCCATTGGAATGGCTAATCATGATCATATTTGGTGTTATGTATGCTAAATTG
1 TTGGTAATGATTAGCCATTGGAATGGCTAATCATGATCATATTTGGTGTTATGTATGCTAAATTG
89115952 CTAGCTAATCCATGGAAACCATGAAATAGGTAAAATTTACCATAAAATAGATTCAGACAGCAACA
66 CTAGCTAATCCATGGAAACCATGAAATAGGTAAAATTTACCATAAAATAGATTCAGACAGCAACA
89116017 GTGATGTGAGTTTGAAAAATCATTAAAAATAGTAGAGATACAATTAGATGATGGA
131 GTGATGTGAGTTTGAAAAATCATTAAAAATAGTAGAGATACAATTAGATGATGGA
89116072 TTGGTAATGATTAGCCATTGGAATGGCTAATCATGATCATATTTGGTGTTATGTATGCTAAATTG
1 TTGGTAATGATTAGCCATTGGAATGGCTAATCATGATCATATTTGGTGTTATGTATGCTAAATTG
*
89116137 CTAGCTAATCTATGGAAACCATGAAATAGGTAAAATTTACCATAAAATAGATTCAGACAGCAACA
66 CTAGCTAATCCATGGAAACCATGAAATAGGTAAAATTTACCATAAAATAGATTCAGACAGCAACA
*
89116202 GTGATGTGAGTTTTAAAAATCATTAAAAATAGTAGAGATACAATTAGATGATG
131 GTGATGTGAGTTTGAAAAATCATTAAAAATAGTAGAGATACAATTAGATGATG
89116255 AATAAAATAT
Statistics
Matches: 180, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
185 180 1.00
ACGTcount: A:0.39, C:0.11, G:0.19, T:0.31
Consensus pattern (185 bp):
TTGGTAATGATTAGCCATTGGAATGGCTAATCATGATCATATTTGGTGTTATGTATGCTAAATTG
CTAGCTAATCCATGGAAACCATGAAATAGGTAAAATTTACCATAAAATAGATTCAGACAGCAACA
GTGATGTGAGTTTGAAAAATCATTAAAAATAGTAGAGATACAATTAGATGATGGA
Found at i:89118390 original size:28 final size:29
Alignment explanation
Indices: 89118278--89118390 Score: 108
Period size: 29 Copynumber: 4.0 Consensus size: 29
89118268 CCTGTATCTA
* * *
89118278 GCCCATTAAGCCC-ATTCATATTCATATG
1 GCCCATTAGGCCCAAATCACATTCATATG
* * *
89118306 GCCTATTAGGCCCAAATTATC-TGT-ATAGG
1 GCCCATTAGGCCCAAATCA-CAT-TCATATG
*
89118335 GCCCATTAGGCCCAAATCACATTTATATG
1 GCCCATTAGGCCCAAATCACATTCATATG
*
89118364 GCCCGTTAGGCCC-AATCACATTCATAT
1 GCCCATTAGGCCCAAATCACATTCATAT
89118391 TCATGCTCAC
Statistics
Matches: 69, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
28 26 0.38
29 42 0.61
30 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
GCCCATTAGGCCCAAATCACATTCATATG
Found at i:89119740 original size:16 final size:16
Alignment explanation
Indices: 89119719--89119752 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
89119709 AAAAAATTTG
*
89119719 GGATTTCGGGATTTTT
1 GGATTTCGAGATTTTT
89119735 GGATTTCGAGATTTTT
1 GGATTTCGAGATTTTT
89119751 GG
1 GG
89119753 GGCATTACAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.15, C:0.06, G:0.32, T:0.47
Consensus pattern (16 bp):
GGATTTCGAGATTTTT
Found at i:89122056 original size:45 final size:45
Alignment explanation
Indices: 89121995--89122195 Score: 185
Period size: 43 Copynumber: 4.7 Consensus size: 45
89121985 ACACACATAT
* *
89121995 ATATATATAATATTTGTCAGTTTCACCAACCAATACTGAGCACAC
1 ATATATATAATATTTGTCAGTTTCACCGACCAATACTGGGCACAC
* * *
89122040 ATATATATAATATTTGT-AGGTTTCACTGACCATTGCTGGGCACAC
1 ATATATATAATATTTGTCA-GTTTCACCGACCAATACTGGGCACAC
* *
89122085 ----AT-T-A-ATTTGTCAGTTTCACCGGCCAATGCTGGG--CAC
1 ATATATATAATATTTGTCAGTTTCACCGACCAATACTGGGCACAC
* *
89122121 ATATATATAATAATTGT-TGATTTCACCGACCAATACTGGGCACAC
1 ATATATATAATATTTGTCAG-TTTCACCGACCAATACTGGGCACAC
* * *
89122166 --ATATATAATATTTGTCGGTTTGACCAACCA
1 ATATATATAATATTTGTCAGTTTCACCGACCA
89122196 GCACTACACG
Statistics
Matches: 127, Mismatches: 16, Indels: 28
0.74 0.09 0.16
Matches are distributed among these distances:
36 3 0.02
38 24 0.19
39 2 0.02
40 3 0.02
41 3 0.02
42 2 0.02
43 47 0.37
44 2 0.02
45 41 0.32
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33
Consensus pattern (45 bp):
ATATATATAATATTTGTCAGTTTCACCGACCAATACTGGGCACAC
Found at i:89122162 original size:81 final size:83
Alignment explanation
Indices: 89122006--89122167 Score: 220
Period size: 81 Copynumber: 2.0 Consensus size: 83
89121996 TATATATAAT
* * *
89122006 ATTTGTCAGTTTCACCAACCAATACTGAGCACACATATATATAATATTTGTAGGTTTCACTGACC
1 ATTTGTCAGTTTCACCAACCAATACTGAGCACACATATATATAATAATTGTAGATTTCACCGACC
* *
89122071 ATTGCTGGGCACACATTA
66 AATACTGGGCACACATTA
** * * *
89122089 ATTTGTCAGTTTCACCGGCCAATGCTG-G-GCACATATATATAATAATTGTTGATTTCACCGACC
1 ATTTGTCAGTTTCACCAACCAATACTGAGCACACATATATATAATAATTGTAGATTTCACCGACC
89122152 AATACTGGGCACACAT
66 AATACTGGGCACACAT
89122168 ATATAATATT
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
81 44 0.64
82 1 0.01
83 24 0.35
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.31
Consensus pattern (83 bp):
ATTTGTCAGTTTCACCAACCAATACTGAGCACACATATATATAATAATTGTAGATTTCACCGACC
AATACTGGGCACACATTA
Found at i:89129755 original size:66 final size:66
Alignment explanation
Indices: 89129649--89129798 Score: 212
Period size: 66 Copynumber: 2.3 Consensus size: 66
89129639 ATAATCAGTT
89129649 TAAAAACGTCACAAAAAAGACACTTTTAGTTACTTTTATTTTTTTAACTAAAAGGCAACGAAA-G
1 TAAAAACGTCACAAAAAAGACACTTTTAGTTACTTTTA-TTTTTTAACTAAAAGGCAACGAAATG
89129713 AA
65 AA
* ** * * * *
89129715 TAAAAACATCACAAAAGGGATATTTTTAGTTACTTTTATTTTTTGACTAAAAGGTAACGAAATGA
1 TAAAAACGTCACAAAAAAGACACTTTTAGTTACTTTTATTTTTTAACTAAAAGGCAACGAAATGA
89129780 A
66 A
*
89129781 CAAAAACGTCACAAAAAA
1 TAAAAACGTCACAAAAAA
89129799 TAGGCAATGA
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
65 22 0.31
66 50 0.69
ACGTcount: A:0.47, C:0.13, G:0.11, T:0.29
Consensus pattern (66 bp):
TAAAAACGTCACAAAAAAGACACTTTTAGTTACTTTTATTTTTTAACTAAAAGGCAACGAAATGA
A
Found at i:89132477 original size:42 final size:42
Alignment explanation
Indices: 89132423--89132552 Score: 154
Period size: 42 Copynumber: 3.1 Consensus size: 42
89132413 TACATAGTAC
* * ****
89132423 CATACCAATGCCATATCTCAGATATGGTCTTACATGGGATCT
1 CATACCGATGCCATATCCCAGATATGGTCTTACACAAAATCT
* * *
89132465 CATATCGATGCCAATAGCCCA-ACTATGGTCTTATACAAAATCT
1 CATACCGATGCC-ATATCCCAGA-TATGGTCTTACACAAAATCT
89132508 CATACCGATGCCATATCCCAGATATGGTCTTACACAAAATCT
1 CATACCGATGCCATATCCCAGATATGGTCTTACACAAAATCT
89132550 CAT
1 CAT
89132553 CTAACTTTAA
Statistics
Matches: 73, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
42 40 0.55
43 33 0.45
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.28
Consensus pattern (42 bp):
CATACCGATGCCATATCCCAGATATGGTCTTACACAAAATCT
Found at i:89139865 original size:66 final size:67
Alignment explanation
Indices: 89139736--89139865 Score: 174
Period size: 66 Copynumber: 1.9 Consensus size: 67
89139726 GGGATGTATC
*
89139736 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
89139801 AGGACA
62 AGGACA
* *
89139807 CCATGTAGACAAGAGAGCTAC-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
89139866 TTCACCATGT
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
66 24 0.44
67 9 0.16
68 1 0.02
71 21 0.38
ACGTcount: A:0.34, C:0.16, G:0.30, T:0.20
Consensus pattern (67 bp):
CCATGTAGACAAGAGAGCTACGGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGGA
CA
Found at i:89142219 original size:26 final size:26
Alignment explanation
Indices: 89142188--89142239 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
89142178 TATTCACATA
89142188 ACGAAGTATACATGCTTATACAATTG
1 ACGAAGTATACATGCTTATACAATTG
89142214 ACGAAGTATACATGCTTATACAATTG
1 ACGAAGTATACATGCTTATACAATTG
89142240 GTGAATACAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (26 bp):
ACGAAGTATACATGCTTATACAATTG
Found at i:89143317 original size:24 final size:25
Alignment explanation
Indices: 89143290--89143341 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
89143280 GCCTAGCCTC
89143290 TTTTGAT-AACTAGGGCAAAGCCCT
1 TTTTGATAAACTAGGGCAAAGCCCT
* *
89143314 TTTTGGTAAACTGGGGCAAAGCCCT
1 TTTTGATAAACTAGGGCAAAGCCCT
89143339 TTT
1 TTT
89143342 CGCACTTCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 6 0.24
25 19 0.76
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (25 bp):
TTTTGATAAACTAGGGCAAAGCCCT
Found at i:89143416 original size:21 final size:21
Alignment explanation
Indices: 89143389--89143449 Score: 88
Period size: 21 Copynumber: 2.9 Consensus size: 21
89143379 TATAATGAGT
89143389 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTGC
* *
89143410 ATCTCATAACATATCATGTGC
1 ATATCATAGCATATCATGTGC
89143431 ATATCAT-GTCATATCATGT
1 ATATCATAG-CATATCATGT
89143450 ATAACATTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (21 bp):
ATATCATAGCATATCATGTGC
Found at i:89143448 original size:10 final size:10
Alignment explanation
Indices: 89143389--89143449 Score: 61
Period size: 10 Copynumber: 5.9 Consensus size: 10
89143379 TATAATGAGT
89143389 ATATCATAG-C
1 ATATCAT-GTC
89143399 ATATCATGTGC
1 ATATCATGT-C
* **
89143410 ATCTCATAAC
1 ATATCATGTC
89143420 ATATCATGTGC
1 ATATCATGT-C
89143431 ATATCATGTC
1 ATATCATGTC
89143441 ATATCATGT
1 ATATCATGT
89143450 ATAACATTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
9 1 0.02
10 24 0.57
11 17 0.40
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (10 bp):
ATATCATGTC
Found at i:89147282 original size:54 final size:56
Alignment explanation
Indices: 89147079--89147336 Score: 324
Period size: 56 Copynumber: 4.7 Consensus size: 56
89147069 TCTCAGACAG
** * * * *
89147079 GGTCTTACTCGCACACATATATTGGAGTCACATATCAATGCCAA-TTATTAAACAT
1 GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGT
* * * * * * *
89147134 GCTTTTATTCACACATATATATCGGAATCACATATCGGTGCCAACGTATTAAACGT
1 GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGT
** *
89147190 GGTCTTACTCGCACACATATGCCAGAATCACATATCGATGCCAACGTATTAAATGT
1 GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGT
* *
89147246 GGTCTTA-T-TCACACATATATCAGAATCACATATCGATGCCAATGTATTAAACGT
1 GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGT
*
89147300 GGTATTACTCGCACACATATATCAGAATCACATATCG
1 GGTCTTACTCGCACACATATATCAGAATCACATATCG
89147337 CAAGTTGAAG
Statistics
Matches: 172, Mismatches: 28, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
54 47 0.27
55 37 0.22
56 88 0.51
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGT
Found at i:89147298 original size:110 final size:110
Alignment explanation
Indices: 89147079--89147336 Score: 356
Period size: 110 Copynumber: 2.3 Consensus size: 110
89147069 TCTCAGACAG
** * * * *
89147079 GGTCTTACTCGCACACATATATTGGAGTCACATATCAATGCCAATTATTAAACATGCTTTTATTC
1 GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAAGTATTAAACATGCTCTTATTC
* *
89147144 ACACATATATATCGGAATCACATATCGGTGCCAACGTATTAAACGT
66 ACACA-ATATATCAGAATCACATATCGATGCCAACGTATTAAACGT
** ** *
89147190 GGTCTTACTCGCACACATATGCCAGAATCACATATCGATGCCAACGTATTAAATGTGGTCTTATT
1 GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAA-GTATTAAACATGCTCTTATT
*
89147255 CACAC-ATATATCAGAATCACATATCGATGCCAATGTATTAAACGT
65 CACACAATATATCAGAATCACATATCGATGCCAACGTATTAAACGT
*
89147300 GGTATTACTCGCACACATATATCAGAATCACATATCG
1 GGTCTTACTCGCACACATATATCAGAATCACATATCG
89147337 CAAGTTGAAG
Statistics
Matches: 129, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
110 71 0.55
111 38 0.29
112 20 0.16
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (110 bp):
GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAAGTATTAAACATGCTCTTATTC
ACACAATATATCAGAATCACATATCGATGCCAACGTATTAAACGT
Found at i:89151336 original size:28 final size:28
Alignment explanation
Indices: 89151302--89151373 Score: 92
Period size: 28 Copynumber: 2.6 Consensus size: 28
89151292 CCCCTTTAGG
* *
89151302 CCCAATCTCATTCATATGAACCATCGG-
1 CCCAATCACATTCATATGAACCACCGGA
**
89151329 CTCCAATCACATTCATATGGCCCACCGGA
1 C-CCAATCACATTCATATGAACCACCGGA
89151358 CCCAATCACATTCATA
1 CCCAATCACATTCATA
89151374 GTCATGCAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
27 1 0.03
28 37 0.95
29 1 0.03
ACGTcount: A:0.31, C:0.36, G:0.10, T:0.24
Consensus pattern (28 bp):
CCCAATCACATTCATATGAACCACCGGA
Found at i:89163344 original size:26 final size:24
Alignment explanation
Indices: 89163305--89163352 Score: 60
Period size: 26 Copynumber: 1.9 Consensus size: 24
89163295 TACTGTTATT
*
89163305 GAGTGAATTATTGATTATATGATTGA
1 GAGTGAAATATTGA--ATATGATTGA
*
89163331 GAGTGAAATGTTGAATATGATT
1 GAGTGAAATATTGAATATGATT
89163353 TCCATGGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 8 0.40
26 12 0.60
ACGTcount: A:0.35, C:0.00, G:0.25, T:0.40
Consensus pattern (24 bp):
GAGTGAAATATTGAATATGATTGA
Found at i:89171394 original size:28 final size:27
Alignment explanation
Indices: 89171330--89171481 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
89171320 TTATTAAGTC
* *
89171330 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
89171357 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
89171385 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
89171412 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
89171440 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
89171467 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
89171482 GCACAATTTA
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:89171414 original size:55 final size:55
Alignment explanation
Indices: 89171330--89171506 Score: 246
Period size: 55 Copynumber: 3.2 Consensus size: 55
89171320 TTATTAAGTC
* * *
89171330 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
89171385 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * * *
89171440 CGCACACTTAGTGCTACATATTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAA-TCAAACT
89171496 CGCACACTTAG
1 CGCACACTTAG
89171507 CGCCAATCTC
Statistics
Matches: 109, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
55 93 0.85
56 16 0.15
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:89186779 original size:42 final size:42
Alignment explanation
Indices: 89186718--89186815 Score: 180
Period size: 42 Copynumber: 2.4 Consensus size: 42
89186708 CTAACTTGGG
89186718 TCACACAGCCGACCACATGCCCATGTACCAAGGCTATGTGCC
1 TCACACAGCCGACCACATGCCCATGTACCAAGGCTATGTGCC
*
89186760 TTACACAGCCGACCACATGCCCATGTACCAAGGCTATGTGCC
1 TCACACAGCCGACCACATGCCCATGTACCAAGGCTATGTGCC
89186802 TCACACAGCC-ACCA
1 TCACACAGCCGACCA
89186816 GACACGCCTG
Statistics
Matches: 54, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
41 4 0.07
42 50 0.93
ACGTcount: A:0.28, C:0.39, G:0.17, T:0.16
Consensus pattern (42 bp):
TCACACAGCCGACCACATGCCCATGTACCAAGGCTATGTGCC
Found at i:89191014 original size:26 final size:26
Alignment explanation
Indices: 89190978--89191029 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
89190968 TATTTTCACT
89190978 TAGTCGATTTCCGTTGAACTCATCGG
1 TAGTCGATTTCCGTTGAACTCATCGG
89191004 TAGTCGATTTCCGTTGAACTCATCGG
1 TAGTCGATTTCCGTTGAACTCATCGG
89191030 AATAATAACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (26 bp):
TAGTCGATTTCCGTTGAACTCATCGG
Found at i:89191204 original size:50 final size:50
Alignment explanation
Indices: 89191100--89191332 Score: 265
Period size: 50 Copynumber: 4.7 Consensus size: 50
89191090 GTACGCATAA
* *** *
89191100 TAGCCTGTACTTAGTACTACACATACGACC-AACAAT-TCGGTACACGTAG
1 TAGCCTGCACTTAGTACTACACACGTGACCTAACTATCT-GGTACACGTAG
* *
89191149 TAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAG
1 TAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGGTACACGTAG
* * * * * ** *
89191199 TAGCCTGCACTTAGTACTACACACATGA-TTGAAGTTGTCGGGTATGCATAG
1 TAGCCTGCACTTAGTACTACACACGTGACCT-AA-CTATCTGGTACACGTAG
* *
89191250 TAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACGTAG
1 TAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGGTACACGTAG
89191300 TAGCCTGCACTTAGTACTACACACGTGACCTAA
1 TAGCCTGCACTTAGTACTACACACGTGACCTAA
89191333 AACCATGTTA
Statistics
Matches: 151, Mismatches: 28, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
49 27 0.18
50 86 0.57
51 37 0.25
52 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (50 bp):
TAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGGTACACGTAG
Found at i:89191374 original size:151 final size:149
Alignment explanation
Indices: 89191094--89191376 Score: 394
Period size: 151 Copynumber: 1.9 Consensus size: 149
89191084 TATCTAGTAC
*
89191094 GCATAATAGCCTGTACTTAGTACTACACATACGACCAACAATTCGGTACACGTAGTAGCCTGCAC
1 GCATAATAGCCTGCACTTAGTACTACACATACGACCAACAATTCGGTACACGTAGTAGCCTGCAC
* * *
89191159 TTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACA
66 TTAGTACTACACACGTGACCTAACCATCTGATAAACATAGTAGCCTGCACATAGTACTA-ACACA
89191224 TGATTGAAGTTGTCGGGTAT
130 TGATTGAAGTTGTCGGGTAT
* * *
89191244 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTA-TCTGGTACACGTAGTAGCCTGC
1 GCATAATAGCCTGCACTTAGTACTACACATACGACC-AACAATTC-GGTACACGTAGTAGCCTGC
* *
89191308 ACTTAGTACTACACACGTGACCTAAAACCATGTTA-AAATCATAGT-GCCCTGCACATAGTACT-
64 ACTTAGTACTACACACGTGACCT--AACCATCTGATAAA-CATAGTAG-CCTGCACATAGTACTA
89191370 ACACATG
125 ACACATG
89191377 TGTTCTCACA
Statistics
Matches: 118, Mismatches: 9, Indels: 11
0.86 0.07 0.08
Matches are distributed among these distances:
150 35 0.30
151 53 0.45
152 3 0.03
153 27 0.23
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (149 bp):
GCATAATAGCCTGCACTTAGTACTACACATACGACCAACAATTCGGTACACGTAGTAGCCTGCAC
TTAGTACTACACACGTGACCTAACCATCTGATAAACATAGTAGCCTGCACATAGTACTAACACAT
GATTGAAGTTGTCGGGTAT
Found at i:89194594 original size:14 final size:15
Alignment explanation
Indices: 89194575--89194604 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
89194565 AATATTTTAT
89194575 TGTTCTTAATT-TTG
1 TGTTCTTAATTCTTG
89194589 TGTTCTTAATTCTTG
1 TGTTCTTAATTCTTG
89194604 T
1 T
89194605 TTTAATATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.13, C:0.10, G:0.13, T:0.63
Consensus pattern (15 bp):
TGTTCTTAATTCTTG
Found at i:89199876 original size:7 final size:7
Alignment explanation
Indices: 89199864--89199892 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
89199854 TTTAAAAACC
89199864 TTTTATT
1 TTTTATT
89199871 TTTTATT
1 TTTTATT
89199878 TTTTA-T
1 TTTTATT
89199884 TTTTATT
1 TTTTATT
89199891 TT
1 TT
89199893 CACTTTTATC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
6 6 0.29
7 15 0.71
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTTATT
Found at i:89199886 original size:13 final size:14
Alignment explanation
Indices: 89199864--89199892 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
89199854 TTTAAAAACC
89199864 TTTTATTTTTTATT
1 TTTTATTTTTTATT
89199878 TTTTA-TTTTTATT
1 TTTTATTTTTTATT
89199891 TT
1 TT
89199893 CACTTTTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (14 bp):
TTTTATTTTTTATT
Found at i:89202410 original size:14 final size:15
Alignment explanation
Indices: 89202386--89202420 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
89202376 GATAAATATT
89202386 TTCTT-TGTTCTTAA
1 TTCTTGTGTTCTTAA
89202400 TT-TTGTGTTCTTAA
1 TTCTTGTGTTCTTAA
89202414 TTCTTGT
1 TTCTTGT
89202421 TTTAATATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 2 0.11
14 13 0.68
15 4 0.21
ACGTcount: A:0.11, C:0.11, G:0.11, T:0.66
Consensus pattern (15 bp):
TTCTTGTGTTCTTAA
Found at i:89205701 original size:40 final size:39
Alignment explanation
Indices: 89205657--89205847 Score: 204
Period size: 40 Copynumber: 4.8 Consensus size: 39
89205647 GGATATAATT
* *
89205657 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGTT-TAGTA
* * *
89205697 ACTCGCACAATTGCCTTCGAGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGG-TTTAGTA
* *
89205737 ACTCGCACAAATGCCTTCGGGACTTAGCCCGAATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACATAGCCCG-GTTTAGTA
* * * * * *
89205777 ACTCGCGCAGATGCCTTTGGGAC-TTGCCCGGTTATAATC
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGTT-TAGTA
* *
89205816 GCTAGCACAAATGCCTTCGGGACATAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGG
89205848 ATAGCATTCG
Statistics
Matches: 126, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
38 2 0.02
39 27 0.21
40 95 0.75
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACATAGCCCGGTTTAGTA
Found at i:89205778 original size:80 final size:79
Alignment explanation
Indices: 89205645--89205846 Score: 230
Period size: 80 Copynumber: 2.5 Consensus size: 79
89205635 CAAAATTTAA
* * * *
89205645 CCGGATATAATTACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTAGAGTAACTCGCACA-ATT
1 CCGGTTATAATAACTCGCACAAATGCCTTCGGGACATAGCCCGATTAGAGTAACTCGCACAGA-T
89205709 GCCTTCGAGACTTAGC
65 GCCTTCGAGACTT-GC
* * * *
89205725 CCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGAATT-TAGTAACTCGCGCAGA
1 CCGG-TTATAATAACTCGCACAAATGCCTTCGGGACATAGCCCG-ATTAGAGTAACTCGCACAGA
* *
89205788 TGCCTTTGGGACTTGC
64 TGCCTTCGAGACTTGC
** *
89205804 CCGGTTATAATCGCTAGCACAAATGCCTTCGGGACATAGCCCG
1 CCGGTTATAATAACTCGCACAAATGCCTTCGGGACATAGCCCG
89205847 GATAGCATTC
Statistics
Matches: 103, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.02
79 37 0.36
80 60 0.58
81 4 0.04
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (79 bp):
CCGGTTATAATAACTCGCACAAATGCCTTCGGGACATAGCCCGATTAGAGTAACTCGCACAGATG
CCTTCGAGACTTGC
Found at i:89207688 original size:39 final size:39
Alignment explanation
Indices: 89207634--89207749 Score: 171
Period size: 39 Copynumber: 3.0 Consensus size: 39
89207624 GCTGTCACAT
* * *
89207634 TTCCAGCACGTAGCCTGCAGACCTTAAGTTCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTTCGGATATAA
* *
89207673 TTCCAGCACATAGCCTGTGGACCCTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTTCGGATATAA
89207712 TTCCAGCACATAGCCTGCGGACCCTAAG-TCTGGATATA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTTC-GGATATA
89207750 CATCACTGAA
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
38 1 0.01
39 68 0.99
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCCTAAGTTCGGATATAA
Found at i:89211199 original size:30 final size:31
Alignment explanation
Indices: 89211120--89211202 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
89211110 TCAGTCTCGA
89211120 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
89211150 CATATCATTGGGTCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
89211181 CATATCACT-GGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
89211203 ACTGTAAGCG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
30 17 0.35
31 31 0.65
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:89211450 original size:25 final size:25
Alignment explanation
Indices: 89211422--89211491 Score: 131
Period size: 25 Copynumber: 2.8 Consensus size: 25
89211412 CTCTTTTAAT
89211422 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
89211447 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
89211472 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
89211492 AGCACTTCCT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:89212325 original size:27 final size:27
Alignment explanation
Indices: 89212290--89212346 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
89212280 GAGCATATTC
*
89212290 GTCATTTTACCATACAGGGGTATTACG
1 GTCACTTTACCATACAGGGGTATTACG
* *
89212317 GTCACTTTACCCTACAGGGGTTTTACG
1 GTCACTTTACCATACAGGGGTATTACG
89212344 GTC
1 GTC
89212347 TTTTTTACCT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.33
Consensus pattern (27 bp):
GTCACTTTACCATACAGGGGTATTACG
Found at i:89212357 original size:27 final size:26
Alignment explanation
Indices: 89212290--89212368 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 26
89212280 GAGCATATTC
89212290 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACC-TACAGGGGTATTACG
* *
89212317 GTCACTTTACCCTACAGGGGTTTTACG
1 GTCATTTTA-CCTACAGGGGTATTACG
* *
89212344 GTCTTTTTTACCTATTAGGGGTATT
1 GTC-ATTTTACCTA-CAGGGGTATT
89212369 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
27 29 0.67
28 14 0.33
ACGTcount: A:0.20, C:0.19, G:0.22, T:0.39
Consensus pattern (26 bp):
GTCATTTTACCTACAGGGGTATTACG
Found at i:89212522 original size:27 final size:27
Alignment explanation
Indices: 89212387--89212595 Score: 170
Period size: 27 Copynumber: 7.7 Consensus size: 27
89212377 TTCATCCTAC
* * * *
89212387 AAGGGTGTTTTGGTAAATCTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAACT
** ** *
89212414 AAGGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTTTACAAACT
* * * *
89212441 AATGGTATTTCT-ATAATTTTTAGAAAGT
1 AAGGGTATTT-TGGTAA-TTTTACAAACT
* ** *
89212469 CAAGGGTATTTTTGTAATTTTGTAAATT
1 -AAGGGTATTTTGGTAATTTTACAAACT
*
89212497 AAGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTGGTAATTTTACAAACT
* * *
89212524 ATGGGTATTTCGGTAATTTCACAAACT
1 AAGGGTATTTTGGTAATTTTACAAACT
89212551 -AGTGGTATTTTGGTAATTTTACAAACT
1 AAG-GGTATTTTGGTAATTTTACAAACT
*
89212578 AGGGGTATTTTGGTAATT
1 AAGGGTATTTTGGTAATT
89212596 CTACCCTATA
Statistics
Matches: 146, Mismatches: 30, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
26 1 0.01
27 116 0.79
28 17 0.12
29 12 0.08
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.42
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAACT
Found at i:89212568 original size:110 final size:108
Alignment explanation
Indices: 89212387--89212595 Score: 231
Period size: 110 Copynumber: 1.9 Consensus size: 108
89212377 TTCATCCTAC
* ***
89212387 AAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTC
1 AAGGGTATTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAATGGTATTTC
* * *
89212452 TATAATTTTTAGAAAGTCAAGGGTATTTTTGTAATTTTGTAAATT
66 TATAA-TTTTACAAACT-AAGGGTATTTTGGTAATTTTGTAAATT
* * ** * * * *
89212497 AAGGGTATTTTGGTAATTTTACAAATTATGGGTATTTCGGTAATTTCACAAACTAGTGGTATTT-
1 AAGGGTATTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAATGGTATTTC
* *
89212561 TGGTAATTTTACAAACTAGGGGTATTTTGGTAATT
66 T-ATAATTTTACAAACTAAGGGTATTTTGGTAATT
89212596 CTACCCTATA
Statistics
Matches: 81, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
108 16 0.20
109 10 0.12
110 55 0.68
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.42
Consensus pattern (108 bp):
AAGGGTATTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAATGGTATTTC
TATAATTTTACAAACTAAGGGTATTTTGGTAATTTTGTAAATT
Found at i:89212612 original size:81 final size:81
Alignment explanation
Indices: 89212473--89212628 Score: 190
Period size: 81 Copynumber: 1.9 Consensus size: 81
89212463 GAAAGTCAAG
* ** * * **
89212473 GGTATTTTTGTAATTTTGTAAATTAAGGGTATTTTGGTAATTTTACAAATTATGGGTATTTCGGT
1 GGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTCTACAAATTATGGGTATTTCAAT
89212538 AATTTCACAAACTAGT
66 AATTTCACAAACTAGT
* **
89212554 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTAC--CCTATAGAGGTATTTCA
1 GGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTCTACAAATTAT-G-GGTATTTCA
89212617 ATAATTTCACAA
64 ATAATTTCACAA
89212629 TCGAGGGTAA
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
79 3 0.05
80 1 0.02
81 59 0.94
ACGTcount: A:0.30, C:0.09, G:0.18, T:0.43
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTCTACAAATTATGGGTATTTCAAT
AATTTCACAAACTAGT
Found at i:89212663 original size:27 final size:27
Alignment explanation
Indices: 89212627--89212718 Score: 148
Period size: 27 Copynumber: 3.4 Consensus size: 27
89212617 ATAATTTCAC
*
89212627 AATCGAGGGTAAAACAGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
89212654 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* *
89212681 AATCAAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
89212708 AATTGAGGGTA
1 AATCGAGGGTA
89212719 CTTTGGTAAT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.42, C:0.09, G:0.22, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTGTA
Found at i:89216749 original size:53 final size:53
Alignment explanation
Indices: 89216667--89216773 Score: 189
Period size: 53 Copynumber: 2.0 Consensus size: 53
89216657 TAACTAATTA
*
89216667 TATGCTTATTTTTATATGATTATAGTTTGAGTTATTATGAGTATATCCAGAAT
1 TATGCTTATTTTTATATGATTATAATTTGAGTTATTATGAGTATATCCAGAAT
89216720 TATGCTT-TTATTTATATGATTATAATTTGAGTTATTATGAGTATATCCAGAAT
1 TATGCTTATT-TTTATATGATTATAATTTGAGTTATTATGAGTATATCCAGAAT
89216773 T
1 T
89216774 GTACTTTTTT
Statistics
Matches: 52, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
52 2 0.04
53 50 0.96
ACGTcount: A:0.31, C:0.06, G:0.14, T:0.50
Consensus pattern (53 bp):
TATGCTTATTTTTATATGATTATAATTTGAGTTATTATGAGTATATCCAGAAT
Found at i:89224833 original size:38 final size:38
Alignment explanation
Indices: 89224790--89225165 Score: 275
Period size: 38 Copynumber: 8.9 Consensus size: 38
89224780 TTTCAAATTA
*
89224790 ACATGTATAACCGTGGCATATCCACTTAGCACTACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
*
89224828 ACATGTTTAACCGTGGCATATCCACTTAGCACCACGTTAAT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACG-T--T
*
89224869 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACGTT
* *
89224913 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAAT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACG-T--T
*
89224954 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACGTT
* *
89224998 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAAT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACG-T--T
* *
89225039 GAATCAATATATGTAACCGTGGCATATCCAATTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACGTT
* * *
89225083 ACATGTATCAATATGTGTAATCGTGGTATATTCACTTAGCACCACGTT
1 ACATG------TA----TAACCGTGGCATATCCACTTAGCACCACGTT
* * *
89225131 ACACGTATAACCGTGGTATATCCACTTAGCGCCAC
1 ACATGTATAACCGTGGCATATCCACTTAGCACCAC
89225166 ATTTTTTTAT
Statistics
Matches: 277, Mismatches: 26, Indels: 70
0.74 0.07 0.19
Matches are distributed among these distances:
38 115 0.42
39 3 0.01
40 8 0.03
41 6 0.02
42 5 0.02
43 3 0.01
44 6 0.02
45 9 0.03
46 5 0.02
47 84 0.30
48 33 0.12
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:89224897 original size:85 final size:85
Alignment explanation
Indices: 89224797--89225088 Score: 557
Period size: 85 Copynumber: 3.4 Consensus size: 85
89224787 TTAACATGTA
* *
89224797 TAACCGTGGCATATCCACTTAGCACTACGTTACATGTTTAACCGTGGCATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
89224862 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
89224882 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
89224947 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
89224967 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
89225032 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
*
89225052 TAACCGTGGCATATCCAATTAGCACCACGTTACATGT
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGT
89225089 ATCAATATGT
Statistics
Matches: 204, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 204 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.29
Consensus pattern (85 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
CGTTAATGAATCAATATATG
Found at i:89224904 original size:47 final size:47
Alignment explanation
Indices: 89224835--89225131 Score: 369
Period size: 47 Copynumber: 6.7 Consensus size: 47
89224825 GTTACATGTT
89224835 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
*
89224882 TAACCGTGGCATATCCACTTAGCACCACG-T--T--A-C-ATGT-T-
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
*
89224920 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
*
89224967 TAACCGTGGCATATCCACTTAGCACCACG-T--T--A-C-ATGT-T-
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
*
89225005 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
* * *
89225052 TAACCGTGGCATATCCAATTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGCATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
* * *
89225100 TAATCGTGGTATATTCACTTAGCACCACGTTA
1 TAACCGTGGCATATCCACTTAGCACCACGTTA
89225132 CACGTATAAC
Statistics
Matches: 216, Mismatches: 15, Indels: 37
0.81 0.06 0.14
Matches are distributed among these distances:
38 56 0.26
39 4 0.02
40 6 0.03
41 4 0.02
42 2 0.01
43 2 0.01
44 4 0.02
45 6 0.03
46 4 0.02
47 87 0.40
48 41 0.19
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (47 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
Found at i:89225122 original size:48 final size:48
Alignment explanation
Indices: 89225000--89225138 Score: 199
Period size: 48 Copynumber: 2.9 Consensus size: 48
89224990 ACCACGTTAC
* *
89225000 ATGTTTAACCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* * *
89225047 ATATGTAACCGTGGCATATCCAATTAGCACCACGTTACATGTATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* * *
89225095 ATGTGTAATCGTGGTATATTCACTTAGCACCACGTTACACGTAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTAT
89225139 AACCGTGGTA
Statistics
Matches: 80, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
47 33 0.41
48 47 0.59
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.32
Consensus pattern (48 bp):
ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
Found at i:89225157 original size:133 final size:132
Alignment explanation
Indices: 89224920--89225165 Score: 393
Period size: 133 Copynumber: 1.9 Consensus size: 132
89224910 GTTACATGTT
* *
89224920 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAC
1 TAACCGTGGCATATCCAATTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAC
* *
89224985 TTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATA
66 TTAGCACCACGTTACACGTATAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATA
89225050 TG
131 TG
* * * * *
89225052 TAACCGTGGCATATCCAATTAGCACCACGTTACATGTATCAATATGTGTAATCGTGGTATATTCA
1 TAACCGTGGCATATCCAATTAGCACCACGTTA-ATGAATCAATATATGTAACCGTGGCATATCCA
*
89225117 CTTAGCACCACGTTACACGTATAACCGTGGTATATCCACTTAGCGCCAC
65 CTTAGCACCACGTTACACGTATAACCGTGGTATATCCACTTAGCACCAC
89225166 ATTTTTTTAT
Statistics
Matches: 103, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
132 30 0.29
133 73 0.71
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.29
Consensus pattern (132 bp):
TAACCGTGGCATATCCAATTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAC
TTAGCACCACGTTACACGTATAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATA
TG
Found at i:89231524 original size:47 final size:47
Alignment explanation
Indices: 89231449--89231552 Score: 145
Period size: 47 Copynumber: 2.2 Consensus size: 47
89231439 TTTATGCGAG
* * * *
89231449 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCTAATAGCCAACGTGATGAATGTGAAAGTGCATAA
* * *
89231496 ATGTGATAAGGCCTAGTGGCCAACGTGATGGATGTGAAAGTGCATAA
1 ATGTGATAAGGCCTAATAGCCAACGTGATGAATGTGAAAGTGCATAA
89231543 ATGTGATAAG
1 ATGTGATAAG
89231553 TCCCGAAGGG
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 50 1.00
ACGTcount: A:0.34, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATAAGGCCTAATAGCCAACGTGATGAATGTGAAAGTGCATAA
Found at i:89231562 original size:165 final size:165
Alignment explanation
Indices: 89231290--89231614 Score: 605
Period size: 165 Copynumber: 2.0 Consensus size: 165
89231280 GAAATGATAG
* **
89231290 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACGGGGCCGAGTGGCCAAC
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAGTGGCCAAC
89231355 GTGATGGATGTGAAAGTGCATAAATGTGATAAGTCCCGAAGGGCATTTGTGTCAGTACTATATCC
66 GTGATGGATGTGAAAGTGCATAAATGTGATAAGTCCCGAAGGGCATTTGTGTCAGTACTATATCC
89231420 GGGTTAAAACCCCGCAGGCTTTATGCGAGATGTGA
131 GGGTTAAAACCCCGCAGGCTTTATGCGAGATGTGA
* *
89231455 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAGTGGCCAAC
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAGTGGCCAAC
89231520 GTGATGGATGTGAAAGTGCATAAATGTGATAAGTCCCGAAGGGCATTTGTGTCAGTACTATATCC
66 GTGATGGATGTGAAAGTGCATAAATGTGATAAGTCCCGAAGGGCATTTGTGTCAGTACTATATCC
89231585 GGGTTAAAACCCCGCAGGCTTTATGCGAGA
131 GGGTTAAAACCCCGCAGGCTTTATGCGAGA
89231615 ATATTATCAC
Statistics
Matches: 155, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
165 155 1.00
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.26
Consensus pattern (165 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAGTGGCCAAC
GTGATGGATGTGAAAGTGCATAAATGTGATAAGTCCCGAAGGGCATTTGTGTCAGTACTATATCC
GGGTTAAAACCCCGCAGGCTTTATGCGAGATGTGA
Found at i:89235894 original size:12 final size:12
Alignment explanation
Indices: 89235877--89235904 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
89235867 CTCCAGTTTT
89235877 CACATGACCTAG
1 CACATGACCTAG
89235889 CACATGACCTAG
1 CACATGACCTAG
89235901 CACA
1 CACA
89235905 CGGGCATATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.36, C:0.36, G:0.14, T:0.14
Consensus pattern (12 bp):
CACATGACCTAG
Found at i:89239768 original size:43 final size:42
Alignment explanation
Indices: 89239710--89239796 Score: 129
Period size: 43 Copynumber: 2.0 Consensus size: 42
89239700 TGAAACACAT
*
89239710 CATGAATCTTATCTAATTTAGTCGGAAGAGCCAATCGATAAG
1 CATGAATCTTATCTAATTCAGTCGGAAGAGCCAATCGATAAG
* * *
89239752 CANTGAATTTTTTCTAATTCAGTTGGAAGAGCCAATCGATAAG
1 CA-TGAATCTTATCTAATTCAGTCGGAAGAGCCAATCGATAAG
89239795 CA
1 CA
89239797 ACAGGCCCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
42 2 0.05
43 38 0.95
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.30
Consensus pattern (42 bp):
CATGAATCTTATCTAATTCAGTCGGAAGAGCCAATCGATAAG
Found at i:89242193 original size:63 final size:64
Alignment explanation
Indices: 89242113--89242297 Score: 173
Period size: 67 Copynumber: 2.9 Consensus size: 64
89242103 CATATAGTTC
* * * *
89242113 AGCTCTCTTGTAC-ACATGGTGA-ACACTCAGTAGCACCCATGTGACCTAGCCA-ATTTATCTCG
1 AGCTCTCTTGT-CTACATGGTGACACA-TCAGTAGCACCCATGCGACCTAGCCACATATACCCCG
89242175 T
64 T
* * * * *
89242176 AGCTCTCTTGTCTACATGGTGTC-CTTCACCTAGAGCCACGCATGCGACCTAGCTACATATACCC
1 AGCTCTCTTGTCTACATGGTGACACATCA-GT--AG-CACCCATGCGACCTAGCCACATATACCC
89242240 CGT
62 CGT
* *
89242243 AGCTCTCTTGTCTACATGGTGTACACAT-AGTATCACCCATGCGACCTAGCTACAT
1 AGCTCTCTTGTCTACATGGTG-ACACATCAGTAGCACCCATGCGACCTAGCCACAT
89242298 CATAATGTCT
Statistics
Matches: 99, Mismatches: 14, Indels: 17
0.76 0.11 0.13
Matches are distributed among these distances:
62 4 0.04
63 21 0.21
64 21 0.21
65 3 0.03
66 16 0.16
67 30 0.30
68 2 0.02
69 2 0.02
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.28
Consensus pattern (64 bp):
AGCTCTCTTGTCTACATGGTGACACATCAGTAGCACCCATGCGACCTAGCCACATATACCCCGT
Found at i:89246829 original size:44 final size:44
Alignment explanation
Indices: 89246753--89247124 Score: 246
Period size: 44 Copynumber: 8.8 Consensus size: 44
89246743 TGATATTCCA
* * * *
89246753 ATCTGCTCTCTGTCAAACACAAAGACGCCAAATCTGCTATCTTCG
1 ATCTGCTCTCTGAC-AATACAGAGATGCCAAATCTGCTATCTTCG
* *
89246798 GTCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCG
1 ATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCG
* * *
89246842 ATCTGCTCCCTG---A-A-A-ATATGCCAAATCTGCT-TCTTGG
1 ATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCG
* * * * * * *
89246879 ATTTACTC-CTTGTCGAATACAAAGATGTCAAGTCTACTATC-TCTG
1 ATCTGCTCTC-TGAC-AATACAGAGATGCCAAATCTGCTATCTTC-G
* * * * * *
89246924 ATTTGCTCTCTGACCATACAAATAGGCCAAATCTACTATCTTCG
1 ATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCG
* * * *
89246968 ATCTGCTCCCTTACAATATA-AGGATGCCAAATCTGCT-TCTTGG
1 ATCTGCTCTCTGACAATACAGA-GATGCCAAATCTGCTATCTTCG
* * * * *
89247011 ATTTTC-CCCTCGTCAAATAC-GAAGATGCCAAA--T-C-ATCTTGG
1 ATCTGCTCTCT-GAC-AATACAG-AGATGCCAAATCTGCTATCTTCG
89247052 ATCTGCTCTCTGACAATACAGAGATGCCAAATCTG----CTTCG
1 ATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCG
89247092 ATCTGCTCTCTGACAATACAGAGATGCCAAATC
1 ATCTGCTCTCTGACAATACAGAGATGCCAAATC
89247125 ATCTTGGATC
Statistics
Matches: 262, Mismatches: 42, Indels: 51
0.74 0.12 0.14
Matches are distributed among these distances:
36 1 0.00
37 13 0.05
38 14 0.05
39 1 0.00
40 53 0.20
41 16 0.06
42 10 0.04
43 12 0.05
44 113 0.43
45 28 0.11
46 1 0.00
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (44 bp):
ATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCG
Found at i:89247055 original size:84 final size:80
Alignment explanation
Indices: 89246961--89247138 Score: 200
Period size: 84 Copynumber: 2.2 Consensus size: 80
89246951 CAAATCTACT
* * *
89246961 ATCTTCGATCTGCTCCCTTACAATATAAG-GATGCCAAATCTGCTTCTTGGATTTTCCCCTCGTC
1 ATCTTGGATCTGCTCCCTGACAATA-AAGAGATGCCAAATCTGCTTC---GA-TCTCCCCTC-TC
89247025 A-AATAC-GAAGATGCCAAATC
60 ACAATACAG-AGATGCCAAATC
* * * * *
89247045 ATCTTGGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTTCGATCTGCTCTCTGACAATA
1 ATCTTGGATCTGCTCCCTGACAATAAAGAGATGCCAAATCTGCTTCGATCTCCCCTCTCACAATA
89247110 CAGAGATGCCAAATC
66 CAGAGATGCCAAATC
89247125 ATCTTGGATCTGCT
1 ATCTTGGATCTGCT
89247139 TCAACGTAAA
Statistics
Matches: 83, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
79 2 0.02
80 37 0.45
81 3 0.04
83 2 0.02
84 39 0.47
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.30
Consensus pattern (80 bp):
ATCTTGGATCTGCTCCCTGACAATAAAGAGATGCCAAATCTGCTTCGATCTCCCCTCTCACAATA
CAGAGATGCCAAATC
Found at i:89247077 original size:40 final size:40
Alignment explanation
Indices: 89247033--89247138 Score: 187
Period size: 40 Copynumber: 2.6 Consensus size: 40
89247023 TCAAATACGA
89247033 AGATGCCAAATCATCTTGGATCTGCTCTCTGACAATACAG
1 AGATGCCAAATCATCTTGGATCTGCTCTCTGACAATACAG
*
89247073 AGATGCCAAATC-TGCTTCGATCTGCTCTCTGACAATACAG
1 AGATGCCAAATCAT-CTTGGATCTGCTCTCTGACAATACAG
89247113 AGATGCCAAATCATCTTGGATCTGCT
1 AGATGCCAAATCATCTTGGATCTGCT
89247139 TCAACGTAAA
Statistics
Matches: 62, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
39 1 0.02
40 60 0.97
41 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.28
Consensus pattern (40 bp):
AGATGCCAAATCATCTTGGATCTGCTCTCTGACAATACAG
Found at i:89253744 original size:47 final size:47
Alignment explanation
Indices: 89253690--89253841 Score: 268
Period size: 47 Copynumber: 3.2 Consensus size: 47
89253680 GTGTGAATAG
89253690 GGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAA
1 GGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAA
* * * *
89253737 GGCCGAATGGCCAATGTGATGAAAGTGAACATGTATATGTGTGATAA
1 GGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAA
89253784 GGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAA
1 GGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAA
89253831 GGCCGAATGGC
1 GGCCGAATGGC
89253842 TGTCCCGAGA
Statistics
Matches: 97, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 97 1.00
ACGTcount: A:0.34, C:0.13, G:0.30, T:0.23
Consensus pattern (47 bp):
GGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAA
Found at i:89271727 original size:12 final size:13
Alignment explanation
Indices: 89271711--89271748 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
89271701 AAGTAATGCA
89271711 AGGTATAATATAT
1 AGGTATAATATAT
*
89271724 -GGTAAAATATAT
1 AGGTATAATATAT
89271736 AGTGTATAATATA
1 AG-GTATAATATA
89271749 ATTTGCAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
12 11 0.52
13 1 0.05
14 9 0.43
ACGTcount: A:0.47, C:0.00, G:0.16, T:0.37
Consensus pattern (13 bp):
AGGTATAATATAT
Found at i:89271890 original size:11 final size:11
Alignment explanation
Indices: 89271856--89271897 Score: 57
Period size: 11 Copynumber: 3.6 Consensus size: 11
89271846 TATAAGGAAT
89271856 AATATATAATAA
1 AATATA-AATAA
*
89271868 GATATGAAATAA
1 AATAT-AAATAA
89271880 AATATAAATAA
1 AATATAAATAA
89271891 AATATAA
1 AATATAA
89271898 TGAAATGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
11 13 0.48
12 13 0.48
13 1 0.04
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.29
Consensus pattern (11 bp):
AATATAAATAA
Found at i:89272031 original size:18 final size:18
Alignment explanation
Indices: 89272008--89272104 Score: 54
Period size: 21 Copynumber: 5.8 Consensus size: 18
89271998 CATTATTTAA
89272008 AATAAAAATAATATATAT
1 AATAAAAATAATATATAT
89272026 AAT-AAAAT-A-A-ATAT
1 AATAAAAATAATATATAT
*
89272040 -A-AAATATAAT-T-TAT
1 AATAAAAATAATATATAT
*
89272054 AAGT-AAAAT-ATAGA-AT
1 AA-TAAAAATAATATATAT
*
89272070 AATAAAAATAACATGATGGAT
1 AATAAAAATAATAT-AT--AT
89272091 AATAAAAATAATAT
1 AATAAAAATAATAT
89272105 GTAACTAATG
Statistics
Matches: 58, Mismatches: 6, Indels: 27
0.64 0.07 0.30
Matches are distributed among these distances:
13 5 0.09
14 8 0.14
15 5 0.09
16 14 0.24
17 7 0.12
18 4 0.07
21 15 0.26
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (18 bp):
AATAAAAATAATATATAT
Found at i:89278751 original size:18 final size:17
Alignment explanation
Indices: 89278725--89278758 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
89278715 CTCATTTGTA
89278725 TGTTTGTAAGAATTTAG
1 TGTTTGTAAGAATTTAG
*
89278742 TGTTTAGTAAGAGTTTA
1 TGTTT-GTAAGAATTTA
89278759 CCTGTTGAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.24, T:0.47
Consensus pattern (17 bp):
TGTTTGTAAGAATTTAG
Found at i:89283157 original size:42 final size:42
Alignment explanation
Indices: 89283103--89283221 Score: 125
Period size: 42 Copynumber: 2.8 Consensus size: 42
89283093 CACATAGTAC
* *
89283103 CATACCAATGCCATATCTCAGATAGGGTCTTACATTGGAT-CT
1 CATATCAATGCCATATCTCAGATAGGGTCTTACA-TGAATCCT
* * * *
89283145 CATATCGATGCCAATAGCCCAG-TTGTGGTCTTACATGAATCCT
1 CATATCAATGCC-ATATCTCAGATAG-GGTCTTACATGAATCCT
* *
89283188 CATATCAATGCCATATCTCGGATATGGTCTTACA
1 CATATCAATGCCATATCTCAGATAGGGTCTTACA
89283222 AGTAATCTCA
Statistics
Matches: 61, Mismatches: 12, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
42 31 0.51
43 30 0.49
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (42 bp):
CATATCAATGCCATATCTCAGATAGGGTCTTACATGAATCCT
Found at i:89285411 original size:21 final size:19
Alignment explanation
Indices: 89285373--89285411 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
89285363 CTAAATTTTG
*
89285373 AAAATTTTCTATGTTTTCC
1 AAAATTTTCTAAGTTTTCC
89285392 AAAATTTTTCCTAAGTTTTC
1 AAAA-TTTT-CTAAGTTTTC
89285412 GATTTAGTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 4 0.24
21 9 0.53
ACGTcount: A:0.28, C:0.15, G:0.05, T:0.51
Consensus pattern (19 bp):
AAAATTTTCTAAGTTTTCC
Found at i:89288494 original size:13 final size:13
Alignment explanation
Indices: 89288476--89288501 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
89288466 AGGACCTCCA
89288476 ACACTCCCTATAG
1 ACACTCCCTATAG
89288489 ACACTCCCTATAG
1 ACACTCCCTATAG
89288502 TTGTAATGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.38, G:0.08, T:0.23
Consensus pattern (13 bp):
ACACTCCCTATAG
Found at i:89290713 original size:48 final size:47
Alignment explanation
Indices: 89290642--89290916 Score: 232
Period size: 48 Copynumber: 5.7 Consensus size: 47
89290632 TGGCATCATA
*
89290642 AGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCAATGTTGTG
1 AGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCAATG-TGTG
* * * *
89290690 AGAGCCAGTGTAAGACCATGTTTGGGACATGGCGTCGGC-GTCGATATG
1 AGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCAAT-G-TGTG
* * * * * * *
89290738 TGTGCTAGTGTAAGACCATGTCTGGGACATGGCGTTAGCCACAT-TATG
1 AGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAG-CA-ATGTGTG
* * *
89290786 AGAGCCAGTGTAAGACCATGTTTCGGACATGGCATC-GACATTGAGATG
1 AGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAG-CAATGTG-TG
* * ** * * *
89290834 AGAGCCAATGTAAGACCATGTATGGGTTATGGCATCGGCATTGAGATG
1 AGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCAATGTG-TG
* * *
89290882 GGAGCAAGTGTAAGACCATGTCTGGGACATGGCAT
1 AGAGCCAGTGTAAGACCATGTTTGGGACATGGCAT
89290917 TCGCCTCGAC
Statistics
Matches: 185, Mismatches: 35, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
46 1 0.01
47 4 0.02
48 177 0.96
49 2 0.01
51 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.24
Consensus pattern (47 bp):
AGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCAATGTGTG
Found at i:89290846 original size:96 final size:96
Alignment explanation
Indices: 89290642--89290965 Score: 283
Period size: 96 Copynumber: 3.4 Consensus size: 96
89290632 TGGCATCATA
* * ** *
89290642 AGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCAATGTTGTGAGAGCCAGTGTAAGACC
1 AGAGCCAGTGTAAGACCATGTATGGGACATGGCATCAGCAACATTATGAGAGCCAGTGTAAGACC
* * * * *
89290707 ATGTTTGGGACATGGCGTCGGCGTCGATATG
66 ATGTTTCGGACATGGCATCGACATCGAGATG
* * * * * * *
89290738 TGTGCTAGTGTAAGACCATGTCTGGGACATGGCGTTAGCCACATTATGAGAGCCAGTGTAAGACC
1 AGAGCCAGTGTAAGACCATGTATGGGACATGGCATCAGCAACATTATGAGAGCCAGTGTAAGACC
*
89290803 ATGTTTCGGACATGGCATCGACATTGAGATG
66 ATGTTTCGGACATGGCATCGACATCGAGATG
* ** * ** * * *
89290834 AGAGCCAATGTAAGACCATGTATGGGTTATGGCATCGGCATTGA-GATGGGAGCAAGTGTAAGAC
1 AGAGCCAGTGTAAGACCATGTATGGGACATGGCATCAGCA-ACATTATGAGAGCCAGTGTAAGAC
* * * **
89290898 CATGTCTGGGACATGGCATTCG-CCTCGACTTG
65 CATGTTTCGGACATGGCA-TCGACATCGAGATG
* * * * *
89290930 TGATCCAGTGAAAGACCATGTCTGAGACATGGCATC
1 AGAGCCAGTGTAAGACCATGTATGGGACATGGCATC
89290966 GGTAATTCAC
Statistics
Matches: 179, Mismatches: 47, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
96 175 0.98
97 4 0.02
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (96 bp):
AGAGCCAGTGTAAGACCATGTATGGGACATGGCATCAGCAACATTATGAGAGCCAGTGTAAGACC
ATGTTTCGGACATGGCATCGACATCGAGATG
Found at i:89290902 original size:144 final size:144
Alignment explanation
Indices: 89290642--89290966 Score: 388
Period size: 144 Copynumber: 2.2 Consensus size: 144
89290632 TGGCATCATA
* *
89290642 AGAGCCAGTGTAAGACCATGTTTGGAACATGGCATC-AGCAATGTTGTGAGAGCCAGTGTAAGAC
1 AGAGCCAGTGTAAGACCATGTTTGG-ACATGGCATCGAGCAATGTAGTGAGAGCCAATGTAAGAC
* * * * * * *
89290706 CATGTTTGGGACATGGCGTCGGCGTCGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGC
65 CATGTATGGGACATGGCATCGGCATCGAGATGGGAGCAAGTGTAAGACCATGTCTGGGACATGGC
* *
89290771 GTTAGCCAC-ATTATG
130 ATTAGCCACGACT-TG
*
89290786 AGAGCCAGTGTAAGACCATGTTTCGGACATGGCATCGA-CATTG-AGATGAGAGCCAATGTAAGA
1 AGAGCCAGTGTAAGACCATGTTT-GGACATGGCATCGAGCAATGTAG-TGAGAGCCAATGTAAGA
** *
89290849 CCATGTATGGGTTATGGCATCGGCATTGAGATGGGAGCAAGTGTAAGACCATGTCTGGGACATGG
64 CCATGTATGGGACATGGCATCGGCATCGAGATGGGAGCAAGTGTAAGACCATGTCTGGGACATGG
* *
89290914 CATTCGCCTCGACTTG
129 CATTAGCCACGACTTG
* * * *
89290930 TGATCCAGTGAAAGACCATGTCTGAGACATGGCATCG
1 AGAGCCAGTGTAAGACCATGTTTG-GACATGGCATCG
89290967 GTAATTCACC
Statistics
Matches: 155, Mismatches: 21, Indels: 10
0.83 0.11 0.05
Matches are distributed among these distances:
143 2 0.01
144 148 0.95
145 5 0.03
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.24
Consensus pattern (144 bp):
AGAGCCAGTGTAAGACCATGTTTGGACATGGCATCGAGCAATGTAGTGAGAGCCAATGTAAGACC
ATGTATGGGACATGGCATCGGCATCGAGATGGGAGCAAGTGTAAGACCATGTCTGGGACATGGCA
TTAGCCACGACTTG
Found at i:89296652 original size:203 final size:203
Alignment explanation
Indices: 89296303--89296707 Score: 792
Period size: 203 Copynumber: 2.0 Consensus size: 203
89296293 TGTCTCACGA
89296303 GAACCTGAATATCTCTTAACATACTGTCCGTATGATTGTTTCGTTACTTTCCTATGAAAGTAGAT
1 GAACCTGAATATCTCTTAACATACTGTCCGTATGATTGTTTCGTTACTTTCCTATGAAAGTAGAT
89296368 TCATCAAGGTTTGTTTACATAATTTATTCACTATTTAATTCCATTCCTACTATTTTTAGTGATTT
66 TCATCAAGGTTTGTTTACATAATTTATTCACTATTTAATTCCATTCCTACTATTTTTAGTGATTT
*
89296433 TCCAAATCTACATCACTGCTGCTGTCAGCATTTGCCTTTAAGGTAGACTTTACCTATTTCATGGT
131 TCCAAATCGACATCACTGCTGCTGTCAGCATTTGCCTTTAAGGTAGACTTTACCTATTTCATGGT
89296498 TTCCATGG
196 TTCCATGG
*
89296506 GAACCTGAATATCTCTTAACATACTGTCCGTATGATTGTTTCGTTACTTTCCTATGAAAGTATAT
1 GAACCTGAATATCTCTTAACATACTGTCCGTATGATTGTTTCGTTACTTTCCTATGAAAGTAGAT
89296571 TCATCAAGGTTTGTTTACATAATTTATTCACTATTTAATTCCATTCCTACTATTTTTAGTGATTT
66 TCATCAAGGTTTGTTTACATAATTTATTCACTATTTAATTCCATTCCTACTATTTTTAGTGATTT
89296636 TCCAAATCGACATCACTGCTGCTGTCAGCATTTGCCTTTAAGGTAGACTTTACCTATTTCATGGT
131 TCCAAATCGACATCACTGCTGCTGTCAGCATTTGCCTTTAAGGTAGACTTTACCTATTTCATGGT
89296701 TTCCATG
196 TTCCATG
89296708 ATTCAACTAG
Statistics
Matches: 200, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
203 200 1.00
ACGTcount: A:0.25, C:0.20, G:0.13, T:0.42
Consensus pattern (203 bp):
GAACCTGAATATCTCTTAACATACTGTCCGTATGATTGTTTCGTTACTTTCCTATGAAAGTAGAT
TCATCAAGGTTTGTTTACATAATTTATTCACTATTTAATTCCATTCCTACTATTTTTAGTGATTT
TCCAAATCGACATCACTGCTGCTGTCAGCATTTGCCTTTAAGGTAGACTTTACCTATTTCATGGT
TTCCATGG
Found at i:89297204 original size:154 final size:155
Alignment explanation
Indices: 89296923--89297232 Score: 604
Period size: 154 Copynumber: 2.0 Consensus size: 155
89296913 ATTTCGAAGT
89296923 TCAACCAAAATTGTACCAAAAAGGGGCTTTGATAGTGTGGGCGACTTTGACCTCAAGATCCCGAG
1 TCAACCAAAATTGTACCAAAAAGGGGCTTTGATAGTGTGGGCGACTTTGACCTCAAGATCCCGAG
89296988 TCCGATAGCTGGAGAAACAAATCTATAAAACAGAGGAGCAATGAAACGGAGTAAGCAATTTATGC
66 TCCGATAGCTGGAGAAACAAATCTATAAAACAGAGGAGCAATGAAACGGAGTAAGCAATTTATGC
89297053 TTAGTAAGTTTTGAGCAAGGAATTC
131 TTAGTAAGTTTTGAGCAAGGAATTC
89297078 TCAACCAAAATTGTACCAAAAAGGGGCTTTGATAGTGTGGGCGACTTTGACCTCAAGATCCCG-G
1 TCAACCAAAATTGTACCAAAAAGGGGCTTTGATAGTGTGGGCGACTTTGACCTCAAGATCCCGAG
*
89297142 TCCGATAGCTGGAGAACCAAATCTATAAAACAGAGGAGCAATGAAACGGAGTAAGCAATTTATGC
66 TCCGATAGCTGGAGAAACAAATCTATAAAACAGAGGAGCAATGAAACGGAGTAAGCAATTTATGC
89297207 TTAGTAAGTTTTGAGCAAGGAATTC
131 TTAGTAAGTTTTGAGCAAGGAATTC
89297232 T
1 T
89297233 AGCACAACAA
Statistics
Matches: 154, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
154 91 0.59
155 63 0.41
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (155 bp):
TCAACCAAAATTGTACCAAAAAGGGGCTTTGATAGTGTGGGCGACTTTGACCTCAAGATCCCGAG
TCCGATAGCTGGAGAAACAAATCTATAAAACAGAGGAGCAATGAAACGGAGTAAGCAATTTATGC
TTAGTAAGTTTTGAGCAAGGAATTC
Found at i:89297584 original size:40 final size:40
Alignment explanation
Indices: 89297540--89297801 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
89297530 GCTCCTCGTT
* *
89297540 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
89297580 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
89297620 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
89297659 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
89297698 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
89297737 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
89297778 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
89297802 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:89305591 original size:79 final size:81
Alignment explanation
Indices: 89305489--89305672 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 81
89305479 GCTCCTCGTT
* *
89305489 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAACC
*
89305551 CGGAT-TTAGTAAC-TCGCA
63 CGGATATT-GTAACTTAGCA
**
89305569 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
*
89305633 ATATTGTCACTTAGCA
66 ATATTGTAACTTAGCA
89305649 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
89305673 CATCATTCAA
Statistics
Matches: 92, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
78 14 0.15
79 56 0.61
80 22 0.24
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATTGTAACTTAGCA
Found at i:89305606 original size:39 final size:41
Alignment explanation
Indices: 89305489--89305672 Score: 199
Period size: 40 Copynumber: 4.6 Consensus size: 41
89305479 GCTCCTCGTT
* *
89305489 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAATCTCGCA
* *
89305529 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAA-CTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
89305569 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
* * *
89305608 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAATC-TCGCA
89305649 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
89305673 CATCATTCAA
Statistics
Matches: 128, Mismatches: 7, Indels: 19
0.83 0.05 0.12
Matches are distributed among these distances:
38 3 0.02
39 48 0.38
40 66 0.52
41 11 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
Found at i:89307444 original size:47 final size:47
Alignment explanation
Indices: 89307348--89307455 Score: 146
Period size: 47 Copynumber: 2.3 Consensus size: 47
89307338 TGTGTGAGCT
* ** *
89307348 AGTGTAAGA-CATGTCTGGGACATGCATCAGCCACATTATAAGAGCC
1 AGTGTAAGACCATGTATGGGACATGCATCAGCCACAAGATAAGAACC
* * *
89307394 AGTGTAAGACCATGTATGGGACATGCATCAGCCACAAGATGATAATC
1 AGTGTAAGACCATGTATGGGACATGCATCAGCCACAAGATAAGAACC
89307441 AGTGTAAGACCATGT
1 AGTGTAAGACCATGT
89307456 CGACATGAGA
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
46 9 0.17
47 45 0.83
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACCATGTATGGGACATGCATCAGCCACAAGATAAGAACC
Found at i:89315618 original size:7 final size:6
Alignment explanation
Indices: 89315551--89315628 Score: 50
Period size: 6 Copynumber: 12.5 Consensus size: 6
89315541 AATCCTCCTT
* * * *
89315551 TTTTTA TTATTTA GTCTTA TTCTTA TTCTTA -TTTTA CTTATTTTA TTTTTA
1 TTTTTA TT-TTTA TTTTTA TTTTTA TTTTTA TTTTTA --T-TTTTA TTTTTA
* * *
89315602 TTTTTC TTTTGA TTTTTA TTTTCA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTT
89315629 CAGTTTTATT
Statistics
Matches: 58, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
5 4 0.07
6 43 0.74
7 6 0.10
9 5 0.09
ACGTcount: A:0.17, C:0.08, G:0.03, T:0.73
Consensus pattern (6 bp):
TTTTTA
Found at i:89315635 original size:18 final size:18
Alignment explanation
Indices: 89315590--89315638 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 18
89315580 TATTTTACTT
*
89315590 ATTTTATTTTTATTTTTC
1 ATTTCATTTTTATTTTTC
* *
89315608 TTTTGATTTTTA-TTTTC
1 ATTTCATTTTTATTTTTC
*
89315625 ATTTCAGTTTTATT
1 ATTTCATTTTTATT
89315639 ATTTTATTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
17 14 0.56
18 11 0.44
ACGTcount: A:0.16, C:0.06, G:0.04, T:0.73
Consensus pattern (18 bp):
ATTTCATTTTTATTTTTC
Found at i:89319041 original size:43 final size:42
Alignment explanation
Indices: 89318980--89319101 Score: 120
Period size: 42 Copynumber: 2.8 Consensus size: 42
89318970 TCCTAGATGT
* * * * *
89318980 GGTCTTACATGTAATCAAATATCTATGCCACTGTCCCAAATAG
1 GGTCTTACACGAAATCAAATA-CGATGCCAATGTCCCAAACAG
* * *
89319023 GGTCTTACACGAAATCAAATACGATGTCAATGTCCCAGACAT
1 GGTCTTACACGAAATCAAATACGATGCCAATGTCCCAAACAG
*
89319065 GGTCTTACACGTAAATCATAAGT-CGATGCCAACGTCC
1 GGTCTTACACG-AAATCA-AA-TACGATGCCAATGTCC
89319102 TAGACGTAGT
Statistics
Matches: 66, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
42 26 0.39
43 25 0.38
44 14 0.21
45 1 0.02
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAATACGATGCCAATGTCCCAAACAG
Found at i:89319070 original size:42 final size:42
Alignment explanation
Indices: 89318979--89319118 Score: 129
Period size: 44 Copynumber: 3.3 Consensus size: 42
89318969 GTCCTAGATG
* * * * * *
89318979 TGGTCTTACATGTAATCAAATATCTATGCCACTGTCCCAAATA
1 TGGTCTTACACGAAATCAAATA-CGATGCCAATGTCCCAGACA
* *
89319022 GGGTCTTACACGAAATCAAATACGATGTCAATGTCCCAGACA
1 TGGTCTTACACGAAATCAAATACGATGCCAATGTCCCAGACA
* * *
89319064 TGGTCTTACACGTAAATCATAAGT-CGATGCCAACGTCCTAGACG
1 TGGTCTTACACG-AAATCA-AA-TACGATGCCAATGTCCCAGACA
*
89319108 TAGTCTTACAC
1 TGGTCTTACAC
89319119 AAAAACACAT
Statistics
Matches: 80, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
42 26 0.32
43 25 0.31
44 28 0.35
45 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.27
Consensus pattern (42 bp):
TGGTCTTACACGAAATCAAATACGATGCCAATGTCCCAGACA
Found at i:89322270 original size:34 final size:34
Alignment explanation
Indices: 89322232--89322309 Score: 113
Period size: 34 Copynumber: 2.3 Consensus size: 34
89322222 AATGACAGTC
* *
89322232 CAGTATCAGTGTGGGCCTTAGCCCA-TAGTAGTAG
1 CAGTATCAGTGTGGGCCTTAGCCCATTA-CAGTAA
*
89322266 CAGTATCAATGTGGGCCTTAGCCCATTACAGTAA
1 CAGTATCAGTGTGGGCCTTAGCCCATTACAGTAA
89322300 CAGTATCAGT
1 CAGTATCAGT
89322310 AATGCAACAG
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
34 37 0.95
35 2 0.05
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (34 bp):
CAGTATCAGTGTGGGCCTTAGCCCATTACAGTAA
Found at i:89329594 original size:30 final size:30
Alignment explanation
Indices: 89329560--89329620 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
89329550 TCCTTAACTC
89329560 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
89329590 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
89329620 A
1 A
89329621 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:89335563 original size:47 final size:47
Alignment explanation
Indices: 89335504--89335736 Score: 358
Period size: 47 Copynumber: 5.0 Consensus size: 47
89335494 TTAGGATTTT
** * *
89335504 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
89335551 ATGTCATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
89335598 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
89335645 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
89335692 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
89335737 TAATATGAAA
Statistics
Matches: 172, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 172 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:89335601 original size:22 final size:22
Alignment explanation
Indices: 89335576--89335651 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
89335566 ACATGCATAT
89335576 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
89335598 ATGTGATGAATGTG-AGCAT-GCATA
1 ATGTGAT-AA-G-GCCGAATGGC-CA
89335622 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
89335645 ATGTGAT
1 ATGTGAT
89335652 GAATGTGAGC
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 15 0.37
23 9 0.22
24 9 0.22
25 8 0.20
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:89335700 original size:25 final size:25
Alignment explanation
Indices: 89335625--89335700 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
89335615 ATGCATATAT
89335625 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
89335650 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
89335672 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
89335697 GTGA
1 GTGA
89335701 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:89335875 original size:98 final size:96
Alignment explanation
Indices: 89335715--89335898 Score: 305
Period size: 98 Copynumber: 1.9 Consensus size: 96
89335705 GAACATGCAT
* * *
89335715 ATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATGTATATGTGGTTAAGCCGA
1 ATATGTGGTAAAGCCAAATGGCTAATATGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
89335780 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
*
89335811 ATATGTGGTAAAGCCAAATGGTTAATATGAAATATATATATGAGATATGTATATGTGGTAAAGCC
1 ATATGTGGTAAAGCCAAATGGCTAATATG-AA-ATATATATGAGATATGTATATGTGGTAAAGCC
*
89335876 GAATGGCTAGTGTGAAATATGTA
64 GAATGGCTAATGTGAAATATGTA
89335899 GGCGATGTGC
Statistics
Matches: 81, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
96 27 0.33
97 2 0.02
98 52 0.64
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.32
Consensus pattern (96 bp):
ATATGTGGTAAAGCCAAATGGCTAATATGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:89335914 original size:50 final size:48
Alignment explanation
Indices: 89335714--89335898 Score: 280
Period size: 48 Copynumber: 3.8 Consensus size: 48
89335704 TGAACATGCA
89335714 TATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATG
* *
89335762 TATATGTGGTTAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATG
* * * *
89335810 CATATGTGGTAAAGCCAAATGGTTAATATGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATATG-AA-ATATGTATGAGATATG
* *
89335860 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTA
89335899 GGCGATGTGC
Statistics
Matches: 121, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
48 77 0.64
49 4 0.03
50 40 0.33
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATG
Found at i:89336153 original size:37 final size:37
Alignment explanation
Indices: 89336048--89336153 Score: 176
Period size: 37 Copynumber: 2.9 Consensus size: 37
89336038 AATATATTCT
*
89336048 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
*
89336085 GGGTAAGACCCGATGACTACGTATGGAGATTTTGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
* *
89336122 GGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 GGGTAAGACCCGATGACTACGTGTGGAGATTT
89336154 CGTCTGAGCT
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
Found at i:89337426 original size:17 final size:17
Alignment explanation
Indices: 89337406--89337440 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
89337396 ACATTTATCT
*
89337406 TTTGAAATTTCCCGTCC
1 TTTGAAAATTCCCGTCC
*
89337423 TTTGAAAATTCGCGTCC
1 TTTGAAAATTCCCGTCC
89337440 T
1 T
89337441 ACTGCTAGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.20, C:0.26, G:0.14, T:0.40
Consensus pattern (17 bp):
TTTGAAAATTCCCGTCC
Found at i:89337762 original size:34 final size:34
Alignment explanation
Indices: 89337723--89337801 Score: 97
Period size: 34 Copynumber: 2.3 Consensus size: 34
89337713 AATGATAGTC
* *
89337723 CAGTATCAGTGTAAGCCTTAGCCCA-TAGTAGTAG
1 CAGTATCAGTATAAGCCTTAGCCCATTAG-AGTAA
* **
89337757 CAGTATCAATATGGGCCTTAGCCCATTAGAGTAA
1 CAGTATCAGTATAAGCCTTAGCCCATTAGAGTAA
89337791 CAGTATCAGTA
1 CAGTATCAGTA
89337802 ATGCAACAGA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
34 35 0.92
35 3 0.08
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.27
Consensus pattern (34 bp):
CAGTATCAGTATAAGCCTTAGCCCATTAGAGTAA
Found at i:89337860 original size:22 final size:23
Alignment explanation
Indices: 89337820--89337862 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
89337810 GAAGTCCTAC
*
89337820 CCATCTATCCTCTACACTCCACA
1 CCATCTAGCCTCTACACTCCACA
89337843 CCATCTAGCCT-TACACTCCA
1 CCATCTAGCCTCTACACTCCA
89337863 TTTGGGGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.26, C:0.47, G:0.02, T:0.26
Consensus pattern (23 bp):
CCATCTAGCCTCTACACTCCACA
Found at i:89344036 original size:27 final size:27
Alignment explanation
Indices: 89343998--89344215 Score: 228
Period size: 27 Copynumber: 8.1 Consensus size: 27
89343988 TGGGCCATGT
*
89343998 ATGACTGAAATA-CCCTCATAGGGTAAA
1 ATGACCGAAATACCCCT-ATAGGGTAAA
* *
89344025 ATGATCGAAATACCCCTATATGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
*
89344052 ATGACCGAAATACACCC-ATAGGATAAA
1 ATGACCGAAATAC-CCCTATAGGGTAAA
*
89344079 ATGACTGAAATACCCCTATAGGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
* * *
89344106 ATGACCAAAATACCCCCATAGGGAAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
* *
89344133 ATGAGC-AAGATACCCCTATAAGGTAAA
1 ATGACCGAA-ATACCCCTATAGGGTAAA
* * *
89344160 ATGACCAAAATACCTCTATACGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
* * *
89344187 ATGA-CTATAATATCCCTATAAGGTAAA
1 ATGACCGA-AATACCCCTATAGGGTAAA
89344214 AT
1 AT
89344216 TACTGATTTT
Statistics
Matches: 162, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
26 7 0.04
27 146 0.90
28 9 0.06
ACGTcount: A:0.44, C:0.20, G:0.15, T:0.21
Consensus pattern (27 bp):
ATGACCGAAATACCCCTATAGGGTAAA
Found at i:89349881 original size:27 final size:27
Alignment explanation
Indices: 89349826--89349921 Score: 138
Period size: 27 Copynumber: 3.5 Consensus size: 27
89349816 TGACCATGCG
*
89349826 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGATTATGTA
*
89349854 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGATTTGATTATGTA
* *
89349881 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGATTTGATTATGTA
*
89349908 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
89349922 GACTCAATAT
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
27 47 0.76
28 15 0.24
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGATTATGTA
Found at i:89359820 original size:28 final size:30
Alignment explanation
Indices: 89359787--89359845 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
89359777 AATACATTTC
*
89359787 ACATA-TTCCCCATTCATTTG-CACATATA
1 ACATATTTCCCCATACATTTGTCACATATA
* *
89359815 ACATATTTTCTCATACATTTGTCACATATA
1 ACATATTTCCCCATACATTTGTCACATATA
89359845 A
1 A
89359846 TCAATTGATC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 5 0.19
29 12 0.46
30 9 0.35
ACGTcount: A:0.34, C:0.24, G:0.03, T:0.39
Consensus pattern (30 bp):
ACATATTTCCCCATACATTTGTCACATATA
Found at i:89360117 original size:42 final size:43
Alignment explanation
Indices: 89360034--89360136 Score: 127
Period size: 42 Copynumber: 2.4 Consensus size: 43
89360024 TCCCAGATGT
* * ** *
89360034 GGTCTTACATGTAGTCAAATATCGATGCCGCTGTCCCAGACAA
1 GGTCTTACATGAAATCAAATATAAATGCCGATGTCCCAGACAA
*
89360077 GGTCTTACATGAAATCAAATA-AAATGCCGATGTCCCAGACAT
1 GGTCTTACATGAAATCAAATATAAATGCCGATGTCCCAGACAA
*
89360119 GGTCTTACACGTAAATCA
1 GGTCTTACATG-AAATCA
89360137 TAATTTGATC
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
42 27 0.52
43 25 0.48
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.25
Consensus pattern (43 bp):
GGTCTTACATGAAATCAAATATAAATGCCGATGTCCCAGACAA
Found at i:89366429 original size:48 final size:48
Alignment explanation
Indices: 89366230--89366593 Score: 236
Period size: 48 Copynumber: 7.6 Consensus size: 48
89366220 TATGTGCACT
* * *
89366230 AGTGTAAGACCATGACTGGGACATGGCGTCGACCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
* * * * * ** *
89366278 AGTGTAAGACAATGTTTGGAACACGGCATCGGCAATGTTGTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
* * * *
89366326 AATGTAAGACCATGTCTGGGACACGGCATC-G--ACGTTGAT-ATGTATGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATT-ATGA-G-A-GCC
* *
89366374 AGCGTAAGACCATGTCTGGGACATGGCGTCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
*
89366422 AGTGTAAGACCATGTCTGGGACATGGCATC-G---TATTGA-GACGAGGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATT-ATGA-GA-GCC
* *
89366468 AGTGTAAGACCATGTTTGGGCCATGGCATC-G--ACATTGA-GACGAAAG-C
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATT-ATGA-G--AGCC
* * * * ** * * *
89366515 TGTGTAAGACCAGGTCTGGGACATAGTATTAGCCTCGA-CATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC-ATTATGAGAGCC
* *
89366563 AGTGTATGACCATGTCTGGGACATGACATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
89366594 TTAATTCACC
Statistics
Matches: 248, Mismatches: 48, Indels: 40
0.74 0.14 0.12
Matches are distributed among these distances:
44 5 0.02
45 8 0.03
46 34 0.14
47 38 0.15
48 147 0.59
49 5 0.02
50 5 0.02
51 6 0.02
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
Found at i:89367818 original size:20 final size:21
Alignment explanation
Indices: 89367780--89367819 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
89367770 GTTAAGAAGA
*
89367780 CACACGGGTGTGTTGCCCTTC
1 CACACGGGCGTGTTGCCCTTC
89367801 CACACGGGCGTG-TGCCCTT
1 CACACGGGCGTGTTGCCCTT
89367820 GTCTACTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.10, C:0.35, G:0.30, T:0.25
Consensus pattern (21 bp):
CACACGGGCGTGTTGCCCTTC
Found at i:89369934 original size:15 final size:15
Alignment explanation
Indices: 89369914--89369944 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
89369904 AAATATGAAA
89369914 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
89369929 GATATGTTTTGTATT
1 GATATGTTTTGGATT
89369944 G
1 G
89369945 GATTTTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:89370943 original size:56 final size:56
Alignment explanation
Indices: 89370857--89371200 Score: 679
Period size: 56 Copynumber: 6.1 Consensus size: 56
89370847 ACAAGGGATG
89370857 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
89370913 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
89370969 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
89371025 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
89371081 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
89371137 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
89371193 ATGGGCAA
1 ATGGGCAA
89371201 TAAACTAATA
Statistics
Matches: 287, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 287 1.00
ACGTcount: A:0.46, C:0.09, G:0.22, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:89371550 original size:40 final size:40
Alignment explanation
Indices: 89371501--89371792 Score: 423
Period size: 40 Copynumber: 7.3 Consensus size: 40
89371491 ATATCCGGAC
*
89371501 TAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
1 TAAGTTCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
89371541 TAAGTTCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
1 TAAGTTCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
89371581 TAAGTTCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
1 TAAGTTCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
*
89371621 TAAGTTCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGC
1 TAAGTTCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGT
89371661 TAAG-TCCTGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
1 TAAGTTCC-GAAGGCATTTGTGCGAGTTACTAAATCCGGGT
* *
89371701 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGC
1 TAAGTTCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGT
* * ** *
89371741 TATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGT
1 TAAGTTCCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGGT
*
89371780 TAAATTCCGAAGG
1 TAAGTTCCGAAGG
89371793 TACGTGATTT
Statistics
Matches: 232, Mismatches: 13, Indels: 15
0.89 0.05 0.06
Matches are distributed among these distances:
39 20 0.09
40 206 0.89
41 6 0.03
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (40 bp):
TAAGTTCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
Found at i:89378214 original size:56 final size:56
Alignment explanation
Indices: 89378128--89378303 Score: 334
Period size: 56 Copynumber: 3.1 Consensus size: 56
89378118 ACAAGGGATG
*
89378128 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATCAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
89378184 ATGGGCAAAACATGTCATCAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATCAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
89378240 ATGGGCAAAACATGTCATCAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATCAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
89378296 ATGGGCAA
1 ATGGGCAA
89378304 TAAACTAATA
Statistics
Matches: 118, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 118 1.00
ACGTcount: A:0.45, C:0.10, G:0.22, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATCAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:89378338 original size:112 final size:111
Alignment explanation
Indices: 89378128--89378343 Score: 251
Period size: 112 Copynumber: 1.9 Consensus size: 111
89378118 ACAAGGGATG
*
89378128 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCAAA
1 ATGGGCAAAACATGTCATCAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCAAA
* * * ** ** ***
89378193 ACATGTCATCAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
66 ACATCTAATCAAAAATGAAGTGAGAAAACAAAAA-AAAATAAGAAGC
*
89378240 ATGGGCAAAACATGTCATCAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGCATGGGCAAT
1 ATGGGCAAAACATGTCATCAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCAA-
89378305 AA-A-CTAAT-AAGAAATGGAAG-GAAGAAAACAAAAAAAAAT
65 AACATCTAATCAA-AAAT-GAAGTG-AGAAAACAAAAAAAAAT
89378344 GTGTGTGAGT
Statistics
Matches: 88, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
110 2 0.02
111 12 0.14
112 72 0.82
113 2 0.02
ACGTcount: A:0.50, C:0.09, G:0.20, T:0.21
Consensus pattern (111 bp):
ATGGGCAAAACATGTCATCAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCAAA
ACATCTAATCAAAAATGAAGTGAGAAAACAAAAAAAAATAAGAAGC
Found at i:89379167 original size:40 final size:41
Alignment explanation
Indices: 89379071--89379175 Score: 117
Period size: 40 Copynumber: 2.6 Consensus size: 41
89379061 TGAATGATGT
* *
89379071 CCGGGCTAAGTCTCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCATAA
* * * *
89379111 CCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTATAA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGTGACCATAA
*
89379151 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
89379176 AACGAGTAGC
Statistics
Matches: 54, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
39 1 0.02
40 45 0.83
41 8 0.15
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (41 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCATAA
Found at i:89382214 original size:15 final size:15
Alignment explanation
Indices: 89382190--89382234 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 15
89382180 AAATAGCTAT
*
89382190 TTTTGT-TATATGTG
1 TTTTGTATATATATG
89382204 TTTTGTATATAATATG
1 TTTTGTATAT-ATATG
89382220 TTTTGATATATATAT
1 TTTTG-TATATATAT
89382235 ATTGGATTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
14 6 0.22
15 3 0.11
16 13 0.48
17 5 0.19
ACGTcount: A:0.27, C:0.00, G:0.13, T:0.60
Consensus pattern (15 bp):
TTTTGTATATATATG
Found at i:89382236 original size:18 final size:17
Alignment explanation
Indices: 89382196--89382236 Score: 57
Period size: 16 Copynumber: 2.4 Consensus size: 17
89382186 CTATTTTTGT
*
89382196 TATATGTGTTTTGTATA
1 TATATATGTTTTGTATA
89382213 TA-ATATGTTTTGATATA
1 TATATATGTTTTG-TATA
89382230 TATATAT
1 TATATAT
89382237 TGGATTATGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 9 0.43
17 8 0.38
18 4 0.19
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (17 bp):
TATATATGTTTTGTATA
Found at i:89387844 original size:15 final size:15
Alignment explanation
Indices: 89387824--89387854 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
89387814 AAATATGAAA
89387824 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
89387839 GATATGTTTTGTATT
1 GATATGTTTTGGATT
89387854 G
1 G
89387855 GAATTTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:89388551 original size:43 final size:43
Alignment explanation
Indices: 89388502--89388657 Score: 260
Period size: 43 Copynumber: 3.6 Consensus size: 43
89388492 ATGTGTGCGA
89388502 GTAAGACC-CTGTCTGGGACAGTGGCATCGATATGTGATTACAT
1 GTAAGACCAC-GTCTGGGACAGTGGCATCGATATGTGATTACAT
*
89388545 GTAAGACCACGTCTGGGATAGTGGCATCGATATGTGATTACAT
1 GTAAGACCACGTCTGGGACAGTGGCATCGATATGTGATTACAT
*
89388588 GTAAGACCACGTCTGGGATAGTGGCATCGATATGTGATTACAT
1 GTAAGACCACGTCTGGGACAGTGGCATCGATATGTGATTACAT
* *
89388631 GTAAGACCACGCCTGGGACATTGGCAT
1 GTAAGACCACGTCTGGGACAGTGGCAT
89388658 TGTACGATAT
Statistics
Matches: 108, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
43 107 0.99
44 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (43 bp):
GTAAGACCACGTCTGGGACAGTGGCATCGATATGTGATTACAT
Found at i:89389443 original size:17 final size:18
Alignment explanation
Indices: 89389421--89389464 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
89389411 GTTGTTAATA
*
89389421 GGCTAAATTGTG-AAATG
1 GGCTAAATTGGGCAAATG
89389438 GGCTAAA-TGGGCTAAATG
1 GGCTAAATTGGGC-AAATG
89389456 GGCTAAATT
1 GGCTAAATT
89389465 CATGAGCTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 3 0.13
17 7 0.30
18 12 0.52
19 1 0.04
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.27
Consensus pattern (18 bp):
GGCTAAATTGGGCAAATG
Found at i:89389447 original size:9 final size:9
Alignment explanation
Indices: 89389433--89389463 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
89389423 CTAAATTGTG
89389433 AAATGGGCT
1 AAATGGGCT
89389442 AAATGGGCT
1 AAATGGGCT
89389451 AAATGGGCT
1 AAATGGGCT
89389460 AAAT
1 AAAT
89389464 TCATGAGCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.39, C:0.10, G:0.29, T:0.23
Consensus pattern (9 bp):
AAATGGGCT
Found at i:89390186 original size:43 final size:42
Alignment explanation
Indices: 89390092--89390198 Score: 126
Period size: 42 Copynumber: 2.5 Consensus size: 42
89390082 TTCTATTTTC
*
89390092 CATGTAAGACCATGTTTGGGACATCGGCATCGTATCTGATTT
1 CATGTAAGACCATGTTTGGGACATCGGCATCGTATCTGATTA
* * * * *
89390134 CATGTAAGACCCTGTTTGGGGCAGT-GGCATTGATGTTTGATTA
1 CATGTAAGACCATGTTTGGGACA-TCGGCATCG-TATCTGATTA
*
89390177 CATGTAAGACCATGTCTGGGAC
1 CATGTAAGACCATGTTTGGGAC
89390199 GTTGGCATTG
Statistics
Matches: 54, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
42 27 0.50
43 27 0.50
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (42 bp):
CATGTAAGACCATGTTTGGGACATCGGCATCGTATCTGATTA
Found at i:89390205 original size:43 final size:42
Alignment explanation
Indices: 89390092--89390211 Score: 134
Period size: 43 Copynumber: 2.8 Consensus size: 42
89390082 TTCTATTTTC
* * * *
89390092 CATGTAAGACCATGTTTGGGACATCGGCATCGTATCTGATTT
1 CATGTAAGACCATGTTTGGGACGTTGGCATTGTATCTGATTA
* * * *
89390134 CATGTAAGACCCTGTTTGGGGCAG-TGGCATTGATGTTTGATTA
1 CATGTAAGACCATGTTTGGGAC-GTTGGCATTG-TATCTGATTA
*
89390177 CATGTAAGACCATGTCTGGGACGTTGGCATTGTAT
1 CATGTAAGACCATGTTTGGGACGTTGGCATTGTAT
89390212 ATGCTTTCCA
Statistics
Matches: 63, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
42 29 0.46
43 34 0.54
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.33
Consensus pattern (42 bp):
CATGTAAGACCATGTTTGGGACGTTGGCATTGTATCTGATTA
Found at i:89398325 original size:39 final size:40
Alignment explanation
Indices: 89398121--89398343 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
89398111 TTGAATGCTG
* * * * * *
89398121 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
89398161 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
89398201 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
89398241 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
89398281 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
89398320 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
89398344 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:89398363 original size:79 final size:80
Alignment explanation
Indices: 89398196--89398378 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
89398186 GTGCGAGATA
* * *
89398196 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
89398261 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
89398276 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
89398340 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
89398355 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
89398379 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:89416388 original size:20 final size:20
Alignment explanation
Indices: 89416322--89416388 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
89416312 ATTTTGATAA
*
89416322 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
89416342 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
*
89416362 ACATGATATGTATGATATGT
1 ACATGATATGTATGATATGC
89416382 ACATGAT
1 ACATGAT
89416389 GTATTCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:89416467 original size:25 final size:25
Alignment explanation
Indices: 89416439--89416583 Score: 190
Period size: 25 Copynumber: 5.9 Consensus size: 25
89416429 AGGAAGTGTA
89416439 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
*
89416464 AAAGGGCATATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
*
89416489 AAAGGGCTTATGCCCCAGTTTTGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
* *
89416514 AAAGGGCTTATGTCCCAGTTATTA-
1 AAAGGGCTTATGCCCCAGTTATGAT
*
89416538 AAAGGGCTT-TGCCCCAGTTATTA-
1 AAAGGGCTTATGCCCCAGTTATGAT
*
89416561 AAAGAGGC-TAGGCCTCCAGTTAT
1 AAAG-GGCTTATGCC-CCAGTTAT
89416584 ATGGTAAAGC
Statistics
Matches: 109, Mismatches: 8, Indels: 6
0.89 0.07 0.05
Matches are distributed among these distances:
23 18 0.17
24 15 0.14
25 76 0.70
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.28
Consensus pattern (25 bp):
AAAGGGCTTATGCCCCAGTTATGAT
Found at i:89416592 original size:75 final size:75
Alignment explanation
Indices: 89416439--89416581 Score: 195
Period size: 73 Copynumber: 1.9 Consensus size: 75
89416429 AGGAAGTGTA
*
89416439 AAAGGGCTTATGCCCCAGTTATGATAAAGGGCATATGCCCCAGTTATGATAAAGGGCTTATGCCC
1 AAAGGGCTTATGCCCCAGTTATGATAAAGGGCATATGCCCCAGTTATGATAAAGGGCTTAGGCCC
89416504 CAGTTTTGAT
66 CAGTTTTGAT
* * * *
89416514 AAAGGGCTTATGTCCCAGTTATTA-AAAGGGC-TTTGCCCCAGTTATTA-AAAGAGGC-TAGGCC
1 AAAGGGCTTATGCCCCAGTTATGATAAAGGGCATATGCCCCAGTTATGATAAAG-GGCTTAGGCC
89416575 TCCAGTT
65 -CCAGTT
89416582 ATATGGTAAA
Statistics
Matches: 61, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
72 9 0.15
73 23 0.38
74 7 0.11
75 22 0.36
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (75 bp):
AAAGGGCTTATGCCCCAGTTATGATAAAGGGCATATGCCCCAGTTATGATAAAGGGCTTAGGCCC
CAGTTTTGAT
Found at i:89429007 original size:24 final size:23
Alignment explanation
Indices: 89428954--89429008 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
89428944 GGTTGCCGTG
*
89428954 TATA-TAATATTTATGTGTGTTT
1 TATAGTAATATTTATGTGGGTTT
*
89428976 TATTGTAATATTTAT-TGGGTTAAT
1 TATAGTAATATTTATGTGGGTT--T
89429000 TATAGTAAT
1 TATAGTAAT
89429009 TGGATCTTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 8 0.30
23 10 0.37
24 9 0.33
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.55
Consensus pattern (23 bp):
TATAGTAATATTTATGTGGGTTT
Found at i:89431071 original size:20 final size:20
Alignment explanation
Indices: 89431041--89431867 Score: 1636
Period size: 20 Copynumber: 41.4 Consensus size: 20
89431031 ATTTTGATAA
*
89431041 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
89431061 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
89431081 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431101 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431121 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431141 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431161 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431181 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431201 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431221 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431241 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431261 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431281 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431301 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431321 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431341 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431361 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431381 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431401 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431421 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431441 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431461 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431481 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431501 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431521 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431541 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431561 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431581 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431601 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431621 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431641 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431661 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431681 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431701 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431721 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431741 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431761 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431781 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431801 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431821 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431841 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89431861 ACATGAT
1 ACATGAT
89431868 GTATTCATAA
Statistics
Matches: 804, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 804 1.00
ACGTcount: A:0.35, C:0.10, G:0.20, T:0.35
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:89431987 original size:48 final size:47
Alignment explanation
Indices: 89431916--89432016 Score: 168
Period size: 48 Copynumber: 2.1 Consensus size: 47
89431906 GGAGGAAGTG
89431916 TAAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCCA-TTAT
1 TAAAAGGGCTTATGCCCCAGTTATGA-AAAGGGCTT-TGCCCCAGTTAT
*
89431964 TAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATGAAAAGGGCTTTGCCCCAGTTAT
89432011 TAAAAG
1 TAAAAG
89432017 AGTCTAGGCC
Statistics
Matches: 51, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
46 7 0.14
47 19 0.37
48 25 0.49
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.29
Consensus pattern (47 bp):
TAAAAGGGCTTATGCCCCAGTTATGAAAAGGGCTTTGCCCCAGTTAT
Found at i:89431992 original size:24 final size:24
Alignment explanation
Indices: 89431916--89432016 Score: 170
Period size: 23 Copynumber: 4.2 Consensus size: 24
89431906 GGAGGAAGTG
89431916 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
89431940 GATAAAGGGCTTATGCCCCA-TTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
89431964 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
89431988 TAAAAGGGCTT-TGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
89432011 TAAAAG
1 TAAAAG
89432017 AGTCTAGGCC
Statistics
Matches: 73, Mismatches: 2, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
23 35 0.48
24 21 0.29
25 17 0.23
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.29
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:89432267 original size:31 final size:31
Alignment explanation
Indices: 89432229--89432291 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
89432219 CATTTACAGT
*
89432229 AAAGGCTTCGGTCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
89432260 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
89432291 A
1 A
89432292 GTGTGAAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:89433982 original size:29 final size:28
Alignment explanation
Indices: 89433950--89434041 Score: 105
Period size: 29 Copynumber: 3.2 Consensus size: 28
89433940 CACCCATCCT
*
89433950 GCCCAATTCATGTTCATACGGCCCATCAG
1 GCCCAATTCAT-TTCATAAGGCCCATCAG
* * *
89433979 GCCCAATTCACATTCATATGGCCCATTAG
1 GCCCAATTCA-TTTCATAAGGCCCATCAG
*
89434008 GCCCAATCTCATTT-ATAAGGCCCATCCG
1 GCCCAAT-TCATTTCATAAGGCCCATCAG
89434036 GCCCAA
1 GCCCAA
89434042 ATCACATTAT
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
28 17 0.31
29 34 0.63
30 3 0.06
ACGTcount: A:0.26, C:0.35, G:0.15, T:0.24
Consensus pattern (28 bp):
GCCCAATTCATTTCATAAGGCCCATCAG
Done.