Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 27 of 276
Found at i:8469824 original size:31 final size:31
Alignment explanation
Indices: 8469748--8469825 Score: 96
Period size: 30 Copynumber: 2.7 Consensus size: 31
8469738 TTCTAAAATT
8469748 TTATAAAA-ATT-AAAA-A-ATAAATAAAGA
1 TTATAAAATATTAAAAATATATAAATAAAGA
**
8469775 TTATAAAATATTCTAAATATATAAATAAA-A
1 TTATAAAATATTAAAAATATATAAATAAAGA
8469805 TTATAAAATATTAAAAA-ATAT
1 TTATAAAATATTAAAAATATAT
8469826 TACTAATTTG
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
27 8 0.18
28 3 0.07
29 7 0.16
30 17 0.39
31 9 0.20
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (31 bp):
TTATAAAATATTAAAAATATATAAATAAAGA
Found at i:8476861 original size:22 final size:22
Alignment explanation
Indices: 8476836--8476899 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
8476826 AGTTAATGAA
8476836 AATAAAATAACAATACTTGTTG
1 AATAAAATAACAATACTTGTTG
* *
8476858 AATAAAATAACAA-GC-TATT-
1 AATAAAATAACAATACTTGTTG
*
8476877 AGTGAAAATAACAATACTTGTTG
1 AAT-AAAATAACAATACTTGTTG
8476900 CACGCCTAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
19 2 0.06
20 13 0.39
21 2 0.06
22 16 0.48
ACGTcount: A:0.50, C:0.09, G:0.11, T:0.30
Consensus pattern (22 bp):
AATAAAATAACAATACTTGTTG
Found at i:8477063 original size:26 final size:26
Alignment explanation
Indices: 8477027--8477079 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
8477017 ATGATGAATC
8477027 TAAATAATAAAGGAATATTGACATTT
1 TAAATAATAAAGGAATATTGACATTT
8477053 TAAATAATAAAGGAATATTGACATTT
1 TAAATAATAAAGGAATATTGACATTT
8477079 T
1 T
8477080 CTCTATGATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.49, C:0.04, G:0.11, T:0.36
Consensus pattern (26 bp):
TAAATAATAAAGGAATATTGACATTT
Found at i:8487942 original size:28 final size:28
Alignment explanation
Indices: 8487885--8487953 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 28
8487875 TATATAGTTT
**
8487885 GCACACTTAGTGCTCAATATTTAAACTC
1 GCACACTTAGTGCTCAATATCCAAACTC
* *
8487913 GCACACTTAGTGCTCAATGA-CCATATTC
1 GCACACTTAGTGCTCAAT-ATCCAAACTC
8487941 GCACACTTAGTGC
1 GCACACTTAGTGC
8487954 AAGATTCACA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
28 35 0.97
29 1 0.03
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (28 bp):
GCACACTTAGTGCTCAATATCCAAACTC
Found at i:8494532 original size:20 final size:20
Alignment explanation
Indices: 8494503--8494547 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
8494493 AGCACATGTA
*
8494503 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTAGAACTT
* *
8494523 TTCATCAAATTTTATAACTT
1 TTCATAAAATTTTAGAACTT
8494543 TTCAT
1 TTCAT
8494548 TTTAGTCCCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.11, G:0.02, T:0.51
Consensus pattern (20 bp):
TTCATAAAATTTTAGAACTT
Found at i:8496164 original size:13 final size:13
Alignment explanation
Indices: 8496143--8496177 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
8496133 AGTGTCTGAG
8496143 AAGCCTTGGGTTC
1 AAGCCTTGGGTTC
*
8496156 AAGCTTTGGGTTC
1 AAGCCTTGGGTTC
8496169 AAGCCTTGG
1 AAGCCTTGG
8496178 CTTATGTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.17, C:0.20, G:0.31, T:0.31
Consensus pattern (13 bp):
AAGCCTTGGGTTC
Found at i:8500323 original size:69 final size:67
Alignment explanation
Indices: 8500210--8500340 Score: 190
Period size: 69 Copynumber: 1.9 Consensus size: 67
8500200 CAGAAATAAT
* * *
8500210 ATATTAAATTTAATTTAATTTTAGCTTAATAGTATTTTATTAATTTAATATTAAAGTGATTATCT
1 ATATTAAATTTAATCTAATTTTAGCTTAATAATATTATATTAATTTAATATTAAAGTGATTATCT
8500275 TA
66 TA
* * *
8500277 ATATTAAATTTAATCTCATATTTATCTTGATAAATATTATATTAATTTAATATTAAAGTGATTA
1 ATATTAAATTTAATCTAAT-TTTAGCTTAAT-AATATTATATTAATTTAATATTAAAGTGATTA
8500341 AGTTTAACCA
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
67 17 0.30
68 9 0.16
69 30 0.54
ACGTcount: A:0.40, C:0.04, G:0.05, T:0.50
Consensus pattern (67 bp):
ATATTAAATTTAATCTAATTTTAGCTTAATAATATTATATTAATTTAATATTAAAGTGATTATCT
TA
Found at i:8501491 original size:43 final size:43
Alignment explanation
Indices: 8501430--8501515 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
8501420 ACTCACCTCC
*
8501430 CTTTAATGGGACCCTACCTGGTGCACAGTTCGCATTCACTTCT
1 CTTTAATGGGACCCTACCTGGTGCACAATTCGCATTCACTTCT
8501473 CTTTAATGGGACCCTACCTGGTGCACAATTCGCATTCACTTCT
1 CTTTAATGGGACCCTACCTGGTGCACAATTCGCATTCACTTCT
8501516 TCAGTTTTTC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.20, C:0.30, G:0.17, T:0.33
Consensus pattern (43 bp):
CTTTAATGGGACCCTACCTGGTGCACAATTCGCATTCACTTCT
Found at i:8506292 original size:37 final size:36
Alignment explanation
Indices: 8506229--8506304 Score: 93
Period size: 36 Copynumber: 2.1 Consensus size: 36
8506219 CATCCAGAAA
8506229 TAATATTATTTTAATAGTTTAATATTAAATTTAAT-T
1 TAATATTATTTTAATAGTTTAATATT-AATTTAATAT
* *
8506265 TAATATTTTTCTTAATAGTATT-TTATTAATTTAATAT
1 TAATATTATT-TTAATAGT-TTAATATTAATTTAATAT
8506302 TAA
1 TAA
8506305 AGTGACTATC
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
36 17 0.49
37 16 0.46
38 2 0.06
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.57
Consensus pattern (36 bp):
TAATATTATTTTAATAGTTTAATATTAATTTAATAT
Found at i:8522453 original size:18 final size:18
Alignment explanation
Indices: 8522430--8522465 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
8522420 TTGTTTAACT
8522430 CAATTCTAATTTTGTTAA
1 CAATTCTAATTTTGTTAA
8522448 CAATTCTAATTTTGTTAA
1 CAATTCTAATTTTGTTAA
8522466 AGTCATGACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.11, G:0.06, T:0.50
Consensus pattern (18 bp):
CAATTCTAATTTTGTTAA
Found at i:8524828 original size:29 final size:30
Alignment explanation
Indices: 8524778--8524968 Score: 115
Period size: 30 Copynumber: 6.4 Consensus size: 30
8524768 ATCATCGACG
* ** *
8524778 AATGAAAAGGGATAGTTTCGACTATCGAAT
1 AATGAAAAGGGATGGTGACGACCATCGAAT
*
8524808 ACT-AAAAGGGATGGTGACGACCATC-AAT
1 AATGAAAAGGGATGGTGACGACCATCGAAT
*
8524836 AATGAAAAGGGATGGTGACAACCATCGAACT
1 AATGAAAAGGGATGGTGACGACCATCGAA-T
* * * *
8524867 -GTGAAAAGGGATGGCT-TCGGCTATCG-AT
1 AATGAAAAGGGATGG-TGACGACCATCGAAT
* * * * *
8524895 CTATGAAAAGGGATAGCT-TCGACTATCAAAT
1 -AATGAAAAGGGAT-GGTGACGACCATCGAAT
* * * *
8524926 TATGAAAAGGAATGGTGACAACCATCAAAT
1 AATGAAAAGGGATGGTGACGACCATCGAAT
* *
8524956 TATGAAAAAGGAT
1 AATGAAAAGGGAT
8524969 AGCTTCGGTT
Statistics
Matches: 129, Mismatches: 23, Indels: 18
0.76 0.14 0.11
Matches are distributed among these distances:
28 6 0.05
29 42 0.33
30 76 0.59
31 5 0.04
ACGTcount: A:0.40, C:0.14, G:0.25, T:0.22
Consensus pattern (30 bp):
AATGAAAAGGGATGGTGACGACCATCGAAT
Found at i:8524874 original size:30 final size:29
Alignment explanation
Indices: 8524811--8524880 Score: 97
Period size: 29 Copynumber: 2.4 Consensus size: 29
8524801 ATCGAATACT
*
8524811 AAAAGGGATGGTGACGACCATCAATAATG
1 AAAAGGGATGGTGACAACCATCAATAATG
*
8524840 AAAAGGGATGGTGACAACCATCGAACT-GTG
1 AAAAGGGATGGTGACAACCATC-AA-TAATG
8524870 AAAAGGGATGG
1 AAAAGGGATGG
8524881 CTTCGGCTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
29 21 0.57
30 15 0.41
31 1 0.03
ACGTcount: A:0.40, C:0.13, G:0.31, T:0.16
Consensus pattern (29 bp):
AAAAGGGATGGTGACAACCATCAATAATG
Found at i:8524893 original size:30 final size:30
Alignment explanation
Indices: 8524779--8524940 Score: 120
Period size: 30 Copynumber: 5.5 Consensus size: 30
8524769 TCATCGACGA
* *
8524779 ATGAAAAGGGATAGTTTCGACTATCGAA-T
1 ATGAAAAGGGATGGCTTCGACTATCGAACT
* *
8524808 ACT-AAAAGGGATGG-TGACGACCATC-AA-T
1 A-TGAAAAGGGATGGCT-TCGACTATCGAACT
* * *
8524836 AATGAAAAGGGATGG-TGACAACCATCGAACT
1 -ATGAAAAGGGATGGCT-TCGACTATCGAACT
* * *
8524867 GTGAAAAGGGATGGCTTCGGCTATCGATCT
1 ATGAAAAGGGATGGCTTCGACTATCGAACT
* * *
8524897 ATGAAAAGGGATAGCTTCGACTATCAAATT
1 ATGAAAAGGGATGGCTTCGACTATCGAACT
*
8524927 ATGAAAAGGAATGG
1 ATGAAAAGGGATGG
8524941 TGACAACCAT
Statistics
Matches: 108, Mismatches: 18, Indels: 13
0.78 0.13 0.09
Matches are distributed among these distances:
28 5 0.05
29 40 0.37
30 61 0.56
31 2 0.02
ACGTcount: A:0.38, C:0.14, G:0.27, T:0.22
Consensus pattern (30 bp):
ATGAAAAGGGATGGCTTCGACTATCGAACT
Found at i:8524991 original size:90 final size:90
Alignment explanation
Indices: 8524837--8525025 Score: 218
Period size: 90 Copynumber: 2.1 Consensus size: 90
8524827 ACCATCAATA
* * * * * * *
8524837 ATGAAAAGGGATGGTGACAACCATCGAACTGTGAAAAGGGATGGCTTCGGCTATCGATCTATGAA
1 ATGAAAAGGAATGGTGACAACCATCAAACTATGAAAAAGGATAGCTTCGGCTATCAATCAATGAA
* *
8524902 AAGGGATAGCTTCGACTATCAAATT
66 AAGAGATAGATTCGACTATCAAATT
* * *
8524927 ATGAAAAGGAATGGTGACAACCATCAAATTATGAAAAAGGATAGCTTCGGTTGTCAAAT-AATGA
1 ATGAAAAGGAATGGTGACAACCATCAAACTATGAAAAAGGATAGCTTCGGCTATC-AATCAATGA
* * *
8524991 AAAGAGATATATTTGATTATCAAATT
65 AAAGAGATAGATTCGACTATCAAATT
*
8525017 ACGAAAAGG
1 ATGAAAAGG
8525026 GATATGTCAA
Statistics
Matches: 82, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
90 80 0.98
91 2 0.02
ACGTcount: A:0.40, C:0.12, G:0.23, T:0.24
Consensus pattern (90 bp):
ATGAAAAGGAATGGTGACAACCATCAAACTATGAAAAAGGATAGCTTCGGCTATCAATCAATGAA
AAGAGATAGATTCGACTATCAAATT
Found at i:8527429 original size:12 final size:12
Alignment explanation
Indices: 8527412--8527437 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8527402 AAAAATAGTT
8527412 TTTGTAAAATGA
1 TTTGTAAAATGA
8527424 TTTGTAAAATGA
1 TTTGTAAAATGA
8527436 TT
1 TT
8527438 GAAATAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (12 bp):
TTTGTAAAATGA
Found at i:8534379 original size:34 final size:34
Alignment explanation
Indices: 8534340--8534407 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
8534330 TCTCAACCCG
*
8534340 AGGGTTTAAGCACATACCTGTCAAATTTTCTCAT
1 AGGGTTTAAGCACATACCTATCAAATTTTCTCAT
*
8534374 AGGGTTTAAGCACATACCTATCGAATTTTCTCAT
1 AGGGTTTAAGCACATACCTATCAAATTTTCTCAT
8534408 TCACCACACT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (34 bp):
AGGGTTTAAGCACATACCTATCAAATTTTCTCAT
Found at i:8540485 original size:19 final size:18
Alignment explanation
Indices: 8540458--8540496 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
8540448 AATTAAAAAT
*
8540458 TAAAAATCAAAATTTAAAC
1 TAAAAATC-AAATTCAAAC
*
8540477 TAAAGATCAAATTCAAAC
1 TAAAAATCAAATTCAAAC
8540495 TA
1 TA
8540497 TTTATAAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.59, C:0.13, G:0.03, T:0.26
Consensus pattern (18 bp):
TAAAAATCAAATTCAAAC
Found at i:8540734 original size:33 final size:33
Alignment explanation
Indices: 8540696--8540759 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
8540686 AAAATTAGTC
*
8540696 AAAAATAAATACATTAAAAGCACCAATTTAATT
1 AAAAATAAATACATTAAAAGCACCAACTTAATT
*
8540729 AAAAATAAATACATTAAAGGCACCAACTTAA
1 AAAAATAAATACATTAAAAGCACCAACTTAA
8540760 CTTGCTATCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.58, C:0.14, G:0.05, T:0.23
Consensus pattern (33 bp):
AAAAATAAATACATTAAAAGCACCAACTTAATT
Found at i:8545476 original size:53 final size:53
Alignment explanation
Indices: 8545412--8545518 Score: 142
Period size: 53 Copynumber: 2.0 Consensus size: 53
8545402 CTTTCCTTTT
* * * * *
8545412 TAAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCATTGCCTTA
1 TAAACTCACCATTGACATGCCTTGACATGGTCTTACATGGGATCATTGCCTTA
* * *
8545465 TAAACTCACCATTGACATGCCTTGGCATGGTCTTACATGGGATCTTTGTCTTA
1 TAAACTCACCATTGACATGCCTTGACATGGTCTTACATGGGATCATTGCCTTA
8545518 T
1 T
8545519 CGTAGTTATC
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
53 46 1.00
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.37
Consensus pattern (53 bp):
TAAACTCACCATTGACATGCCTTGACATGGTCTTACATGGGATCATTGCCTTA
Found at i:8551420 original size:34 final size:34
Alignment explanation
Indices: 8551368--8551435 Score: 86
Period size: 34 Copynumber: 2.0 Consensus size: 34
8551358 GCATTTTTGA
* *
8551368 CACTATACTGAGATGGGC-TAAGGCCCAA-ACTGT
1 CACTATACTGAAAAGGGCTTAA-GCCCAAGACTGT
8551401 CACTGATACTGAAAAGGGCTTAAGCCCAAGACTGT
1 CACT-ATACTGAAAAGGGCTTAAGCCCAAGACTGT
8551436 TCAACTGTGC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
33 4 0.13
34 18 0.60
35 8 0.27
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.21
Consensus pattern (34 bp):
CACTATACTGAAAAGGGCTTAAGCCCAAGACTGT
Found at i:8553269 original size:52 final size:48
Alignment explanation
Indices: 8553193--8553399 Score: 177
Period size: 47 Copynumber: 4.2 Consensus size: 48
8553183 CCATGGCAGC
* * * *
8553193 ATGTGAAATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCTTCAGAG
1 ATGTGATATGTG-CTTCCGTATAAGACCATAGCTGGGATATGGCATC-G-G
* *
8553244 AAATGTGATATGTGCTTCCGTATAAGACCATATCCGGGATATGGCATCGG
1 --ATGTGATATGTGCTTCCGTATAAGACCATAGCTGGGATATGGCATCGG
* * *
8553294 -TGTGATATGTGCTACTGTATAAGACCATAGCTGGGATATGGCATC-A
1 ATGTGATATGTGCTTCCGTATAAGACCATAGCTGGGATATGGCATCGG
*** * * * * * *
8553340 ATGTGATATGT-AAGCCATGTAAGACCATGGATGGGCTATGGCCTCGG
1 ATGTGATATGTGCTTCCGTATAAGACCATAGCTGGGATATGGCATCGG
8553387 TATGTGATATGTG
1 -ATGTGATATGTG
8553400 GCTATGTGCA
Statistics
Matches: 128, Mismatches: 22, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
46 24 0.19
47 51 0.40
48 11 0.09
50 1 0.01
51 1 0.01
52 29 0.23
53 11 0.09
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (48 bp):
ATGTGATATGTGCTTCCGTATAAGACCATAGCTGGGATATGGCATCGG
Found at i:8561318 original size:40 final size:39
Alignment explanation
Indices: 8561262--8561384 Score: 174
Period size: 40 Copynumber: 3.1 Consensus size: 39
8561252 TTCGGCAATC
8561262 CAACTAACCAAGGATGTTTATTGTGGGAAGAAGATTAATT
1 CAACTAACCAAGGATGTTTATT-TGGGAAGAAGATTAATT
*
8561302 CAACTAACCAAAGATGTTTATTCTGGGAAGAAGATTAATT
1 CAACTAACCAAGGATGTTTATT-TGGGAAGAAGATTAATT
* * * *
8561342 AAAATAACCAAGGATATTTATTTCGGGAAGAAGATTAACT
1 CAACTAACCAAGGATGTTTATTT-GGGAAGAAGATTAATT
8561382 CAA
1 CAA
8561385 AAAATAGGAG
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.41, C:0.11, G:0.19, T:0.28
Consensus pattern (39 bp):
CAACTAACCAAGGATGTTTATTTGGGAAGAAGATTAATT
Found at i:8563231 original size:43 final size:43
Alignment explanation
Indices: 8563149--8563290 Score: 148
Period size: 43 Copynumber: 3.3 Consensus size: 43
8563139 TGAGACATCG
* * *
8563149 TGTAAGACCGTGTCTGGGACACAGGCCTC-A-ATTGAGATTTACA
1 TGTAAGACCATGTCTGGGACAGAGGCATCGATATT--GATTTACA
* **
8563192 AGTAAGACCATGTCTGGGACATTGGCATCG-TATCTGATTT-CA
1 TGTAAGACCATGTCTGGGACAGAGGCATCGATAT-TGATTTACA
* * *
8563234 TGTAAGACCCTGTCTGTGACAGAGGCATCGATATTGAATTACA
1 TGTAAGACCATGTCTGGGACAGAGGCATCGATATTGATTTACA
8563277 TGTAAGACCATGTC
1 TGTAAGACCATGTC
8563291 CAGGACGTCG
Statistics
Matches: 82, Mismatches: 12, Indels: 10
0.79 0.12 0.10
Matches are distributed among these distances:
42 32 0.39
43 47 0.57
44 2 0.02
45 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAGAGGCATCGATATTGATTTACA
Found at i:8571213 original size:28 final size:28
Alignment explanation
Indices: 8571168--8571245 Score: 129
Period size: 28 Copynumber: 2.8 Consensus size: 28
8571158 TTGCTATCCA
*
8571168 CTGCATCTTGTTGCTTCGATCCACTCTG
1 CTGCGTCTTGTTGCTTCGATCCACTCTG
*
8571196 TTGCGTCTTGTTGCTTCGATCCACTCTG
1 CTGCGTCTTGTTGCTTCGATCCACTCTG
*
8571224 CTGCGTCTTGTTGCTTCAATCC
1 CTGCGTCTTGTTGCTTCGATCC
8571246 GCTTCACTGT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.09, C:0.31, G:0.19, T:0.41
Consensus pattern (28 bp):
CTGCGTCTTGTTGCTTCGATCCACTCTG
Found at i:8571612 original size:44 final size:44
Alignment explanation
Indices: 8571548--8571926 Score: 157
Period size: 44 Copynumber: 8.7 Consensus size: 44
8571538 AATTCCCAGC
* * *
8571548 CTGTTACCCTACTGCATAAGGGTTTAAGGTCCATCACCTTCGAT
1 CTGTTACCCTACTGCTTAAGGGTTTAAGGTCCGTCAACTTCGAT
* * * * * *
8571592 CTGTTTCCCTACTGCTTAAGGGGTTAAGATCTGT-AAATTC-AGC
1 CTGTTACCCTACTGCTTAAGGGTTTAAGGTCCGTCAACTTCGA-T
* * * * * **
8571635 CTATTACCCTACTACTTAGGGGTTTAAGGCCCTTCGCCTTCGAT
1 CTGTTACCCTACTGCTTAAGGGTTTAAGGTCCGTCAACTTCGAT
* * * * * * * *
8571679 CTGTTTCCCCATTGCTTAGGGGGTTTTAAGATCTGT-AAATTC-AGC
1 CTGTTACCCTACTGCTTA-AGGG-TTTAAGGTCCGTCAACTTCGA-T
* * * * *
8571724 CTGTTACCCTACTTCTTAGGGGTTTAAGGCCCTTCATCTTCGAT
1 CTGTTACCCTACTGCTTAAGGGTTTAAGGTCCGTCAACTTCGAT
* * *** * * * * * *
8571768 TTGCT-CCACTACTGCTT-AGGGAGACAAGATCTGTAAATTTAG-C
1 CTGTTACC-CTACTGCTTAAGGG-TTTAAGGTCCGTCAACTTCGAT
* * * *
8571811 CTGTTACCCTAATGCTTAAGGGTTTAAGGCCCATCACCTTCGAT
1 CTGTTACCCTACTGCTTAAGGGTTTAAGGTCCGTCAACTTCGAT
* * * * * *
8571855 CTGTTTCCCTACTGTTTAAGGCG-TTAAGATCTGT-AAATTC-AGC
1 CTGTTACCCTACTGCTTAAGG-GTTTAAGGTCCGTCAACTTCGA-T
*
8571898 CTGTTACCCTACTGCTTAGGGGTTTAAGG
1 CTGTTACCCTACTGCTTAAGGGTTTAAGG
8571927 CCTGTGGATT
Statistics
Matches: 228, Mismatches: 91, Indels: 33
0.65 0.26 0.09
Matches are distributed among these distances:
42 3 0.01
43 89 0.39
44 104 0.46
45 24 0.11
46 8 0.04
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.35
Consensus pattern (44 bp):
CTGTTACCCTACTGCTTAAGGGTTTAAGGTCCGTCAACTTCGAT
Found at i:8571695 original size:87 final size:87
Alignment explanation
Indices: 8571544--8571928 Score: 522
Period size: 87 Copynumber: 4.4 Consensus size: 87
8571534 TTGTAATTCC
* * *
8571544 CAGCCTGTTACCCTACTGCATAAGGGTTTAAGGTCCATCACCTTCGATCTGTTTCCCTACTGCTT
1 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCGATCTGTTTCCCTACTGCTT
8571609 AAGGGGTTAAGATCTGTAAATT
66 AAGGGGTTAAGATCTGTAAATT
* * * * * *
8571631 CAGCCTATTACCCTACTACTTAGGGGTTTAAGGCCCTTCGCCTTCGATCTGTTTCCCCATTGCTT
1 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCGATCTGTTTCCCTACTGCTT
*
8571696 AGGGGGTTTTAAGATCTGTAAATT
66 AAGGGG--TTAAGATCTGTAAATT
* * * * *
8571720 CAGCCTGTTACCCTACTTCTTAGGGGTTTAAGGCCCTTCATCTTCGATTTG-CTCCACTACTGCT
1 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCGATCTGTTTCC-CTACTGCT
**
8571784 T-AGGGAGACAAGATCTGTAAATT
65 TAAGGG-GTTAAGATCTGTAAATT
* * * *
8571807 TAGCCTGTTACCCTAATGCTTAAGGGTTTAAGGCCCATCACCTTCGATCTGTTTCCCTACTGTTT
1 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCGATCTGTTTCCCTACTGCTT
*
8571872 AAGGCGTTAAGATCTGTAAATT
66 AAGGGGTTAAGATCTGTAAATT
8571894 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCC
1 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCC
8571929 TGTGGATTTA
Statistics
Matches: 256, Mismatches: 36, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
87 174 0.68
88 12 0.05
89 70 0.27
ACGTcount: A:0.21, C:0.25, G:0.20, T:0.34
Consensus pattern (87 bp):
CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCGATCTGTTTCCCTACTGCTT
AAGGGGTTAAGATCTGTAAATT
Found at i:8571838 original size:176 final size:174
Alignment explanation
Indices: 8571544--8571928 Score: 522
Period size: 176 Copynumber: 2.2 Consensus size: 174
8571534 TTGTAATTCC
* * * *
8571544 CAGCCTGTTACCCTACTGCATAAGGGTTTAAGGTCCATCACCTTCGATCTGTTTCCCTACTGCTT
1 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCGATCTGTCTCCCTACTGCTT
** * * * *
8571609 AAGGGGTTAAGATCTGTAAATTCAGCCTATTACCCTACTACTTAGGGGTTTAAGGCCCTTCGCCT
66 AAGGGGACAAGATCTGTAAATTCAGCCTATTACCCTAATACTTAAGGGTTTAAGGCCCATCACCT
* * *
8571674 TCGATCTGTTTCCCCATTGCTTAGGGGGTTTTAAGATCTGTAAATT
131 TCGATCTGTTTCCCCACTGCTTAAGGCG--TTAAGATCTGTAAATT
* * * *
8571720 CAGCCTGTTACCCTACTTCTTAGGGGTTTAAGGCCCTTCATCTTCGATTTG-CTCCACTACTGCT
1 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCGATCTGTCTCC-CTACTGCT
* * *
8571784 T-AGGGAGACAAGATCTGTAAATTTAGCCTGTTACCCTAATGCTTAAGGGTTTAAGGCCCATCAC
65 TAAGGG-GACAAGATCTGTAAATTCAGCCTATTACCCTAATACTTAAGGGTTTAAGGCCCATCAC
* *
8571848 CTTCGATCTGTTTCCCTACTGTTTAAGGCGTTAAGATCTGTAAATT
129 CTTCGATCTGTTTCCCCACTGCTTAAGGCGTTAAGATCTGTAAATT
8571894 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCC
1 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCC
8571929 TGTGGATTTA
Statistics
Matches: 184, Mismatches: 23, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
174 50 0.27
175 7 0.04
176 127 0.69
ACGTcount: A:0.21, C:0.25, G:0.20, T:0.34
Consensus pattern (174 bp):
CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCGATCTGTCTCCCTACTGCTT
AAGGGGACAAGATCTGTAAATTCAGCCTATTACCCTAATACTTAAGGGTTTAAGGCCCATCACCT
TCGATCTGTTTCCCCACTGCTTAAGGCGTTAAGATCTGTAAATT
Found at i:8584207 original size:23 final size:23
Alignment explanation
Indices: 8584181--8584251 Score: 72
Period size: 23 Copynumber: 3.1 Consensus size: 23
8584171 ATAGTGATAT
*
8584181 TAAAAAAATAATAGCTATAAAAA
1 TAAAAAAATAATAGCAATAAAAA
* * * *
8584204 TAAAAAAATAATAACCATGACAA
1 TAAAAAAATAATAGCAATAAAAA
* *
8584227 T-AAAGAATAATAGCAATAATAA
1 TAAAAAAATAATAGCAATAAAAA
8584249 TAA
1 TAA
8584252 TAATGAAAAT
Statistics
Matches: 38, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
22 17 0.45
23 21 0.55
ACGTcount: A:0.66, C:0.07, G:0.06, T:0.21
Consensus pattern (23 bp):
TAAAAAAATAATAGCAATAAAAA
Found at i:8584558 original size:44 final size:44
Alignment explanation
Indices: 8584479--8584597 Score: 120
Period size: 44 Copynumber: 2.7 Consensus size: 44
8584469 ATATTAAGTT
* * *
8584479 ACAATAGTAAAATAATAATAGTGATAATAAT--AGTAT-ATTAGATA
1 ACAATAATAAAATAAT-A-AGTAATAATAATAGAGTATAAATAG-TA
8584523 ACAATAATAAAATAATAAGTAATAATAATAGAGTATAAATAGTA
1 ACAATAATAAAATAATAAGTAATAATAATAGAGTATAAATAGTA
***
8584567 GTTATAATAATAATAATAA-TAATAATAATAG
1 ACAATAATAA-AATAATAAGTAATAATAATAG
8584598 TGACGATAGT
Statistics
Matches: 65, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
42 11 0.17
43 1 0.02
44 41 0.63
45 12 0.18
ACGTcount: A:0.58, C:0.02, G:0.09, T:0.31
Consensus pattern (44 bp):
ACAATAATAAAATAATAAGTAATAATAATAGAGTATAAATAGTA
Found at i:8584616 original size:3 final size:3
Alignment explanation
Indices: 8584425--8584596 Score: 113
Period size: 3 Copynumber: 56.7 Consensus size: 3
8584415 TTAATTAGTT
*
8584425 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TGAA GACA -AA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TA-A TAA TAA
* * * * * * *
8584470 TAT TAA GTTA CAA TAG TAA -AA TAA TAA TAG TGA TAA TAA TAG T-A
1 TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
8584514 TAT TAGA TAA CAA TAA TAA -AA TAA TAA GTAA TAA TAA TAGA GT-A TAAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TA-A -TAA T-AA
* * *
8584562 TAG TAG TTA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
8584597 GTGACGATAG
Statistics
Matches: 133, Mismatches: 23, Indels: 26
0.73 0.13 0.14
Matches are distributed among these distances:
2 9 0.07
3 110 0.83
4 13 0.10
5 1 0.01
ACGTcount: A:0.59, C:0.02, G:0.08, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:8584776 original size:23 final size:23
Alignment explanation
Indices: 8584726--8584770 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
8584716 TTAATAACAA
8584726 TAATAATAATATATAAAAATAGG
1 TAATAATAATATATAAAAATAGG
* *
8584749 AAATAATAATATGGTAAAAATA
1 TAATAATAATAT-ATAAAAATA
8584771 TTAATATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.62, C:0.00, G:0.09, T:0.29
Consensus pattern (23 bp):
TAATAATAATATATAAAAATAGG
Found at i:8585418 original size:28 final size:29
Alignment explanation
Indices: 8585368--8585423 Score: 69
Period size: 30 Copynumber: 1.9 Consensus size: 29
8585358 TTTTTTTTTT
*
8585368 AAAAAAAATTTCATTCTTCCTCCATTTTAA
1 AAAAAAAACTTCA-TCTTCCTCCATTTTAA
* *
8585398 AAAAAAAACTTCA-CTTTCTCCTTTTT
1 AAAAAAAACTTCATCTTCCTCCATTTT
8585424 TTTCTCTGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 11 0.48
30 12 0.52
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.41
Consensus pattern (29 bp):
AAAAAAAACTTCATCTTCCTCCATTTTAA
Found at i:8590289 original size:21 final size:21
Alignment explanation
Indices: 8590263--8590306 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
8590253 AGAATATGAT
8590263 AAAAAAATAATACTCCTATCA
1 AAAAAAATAATACTCCTATCA
8590284 AAAAAAATAATACTCCTATCA
1 AAAAAAATAATACTCCTATCA
8590305 AA
1 AA
8590307 TTTAACATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.59, C:0.18, G:0.00, T:0.23
Consensus pattern (21 bp):
AAAAAAATAATACTCCTATCA
Found at i:8593593 original size:32 final size:32
Alignment explanation
Indices: 8593557--8593674 Score: 98
Period size: 32 Copynumber: 3.8 Consensus size: 32
8593547 GGTATATAAA
*
8593557 AAATTAAATTA-ATATATTATTTATATATCATT
1 AAATTAAATTATATA-AATATTTATATATCATT
* *
8593589 AAATTAAATTATTTAAATATTTATGTATCATT
1 AAATTAAATTATATAAATATTTATATATCATT
* ** * * *
8593621 ATATGGAATTATTTAAATA-TAATTTATCATT
1 AAATTAAATTATATAAATATTTATATATCATT
* * *
8593652 ATATCAAATTATTTAAAT-TTTAT
1 AAATTAAATTATATAAATATTTAT
8593675 TTTATTATTA
Statistics
Matches: 73, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
31 29 0.40
32 42 0.58
33 2 0.03
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (32 bp):
AAATTAAATTATATAAATATTTATATATCATT
Found at i:8593685 original size:32 final size:31
Alignment explanation
Indices: 8593576--8593687 Score: 125
Period size: 32 Copynumber: 3.5 Consensus size: 31
8593566 TAATATATTA
* * *
8593576 TTTATATATCATTAAATTAAATTATTTAAAT
1 TTTATTTATCATTATATCAAATTATTTAAAT
* **
8593607 ATTTATGTATCATTATATGGAATTATTTAAAT
1 -TTTATTTATCATTATATCAAATTATTTAAAT
* *
8593639 ATAATTTATCATTATATCAAATTATTTAAAT
1 TTTATTTATCATTATATCAAATTATTTAAAT
*
8593670 TTTATTTTATTATTATAT
1 TTTA-TTTATCATTATAT
8593688 TTAATTTTTT
Statistics
Matches: 67, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
31 28 0.42
32 39 0.58
ACGTcount: A:0.40, C:0.04, G:0.03, T:0.54
Consensus pattern (31 bp):
TTTATTTATCATTATATCAAATTATTTAAAT
Found at i:8594253 original size:21 final size:21
Alignment explanation
Indices: 8594193--8594253 Score: 52
Period size: 23 Copynumber: 2.7 Consensus size: 21
8594183 TAATACATCA
*
8594193 AAAATATTAAAAACATTAAAAT
1 AAAATTTTAAAAA-ATTAAAAT
*
8594215 AAATATTTTCCAACAAATTGAAAAT
1 AAA-ATTTT--AAAAAATT-AAAAT
8594240 -AAATTTTAAAAAAT
1 AAAATTTTAAAAAAT
8594254 ATGTATATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
21 6 0.19
22 3 0.09
23 9 0.28
24 5 0.16
25 9 0.28
ACGTcount: A:0.61, C:0.07, G:0.02, T:0.31
Consensus pattern (21 bp):
AAAATTTTAAAAAATTAAAAT
Found at i:8603884 original size:2 final size:2
Alignment explanation
Indices: 8603877--8603901 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8603867 TGTGATTAAA
8603877 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
8603902 ATATATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:8604867 original size:15 final size:16
Alignment explanation
Indices: 8604838--8604868 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8604828 TTAAGTTAAA
8604838 GAAAGTAACTGAAATG
1 GAAAGTAACTGAAATG
8604854 GAAAGTAA-TGAAATG
1 GAAAGTAACTGAAATG
8604869 CAAATAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.52, C:0.03, G:0.26, T:0.19
Consensus pattern (16 bp):
GAAAGTAACTGAAATG
Found at i:8605087 original size:51 final size:51
Alignment explanation
Indices: 8605031--8605134 Score: 199
Period size: 51 Copynumber: 2.0 Consensus size: 51
8605021 TCTTGACATG
*
8605031 TATAAATTTCATATATGAAATGGATTGATATGACTAAATTTTATACGAGCT
1 TATAAATTTCATATATGAAATGGATTGATATGACTAAAGTTTATACGAGCT
8605082 TATAAATTTCATATATGAAATGGATTGATATGACTAAAGTTTATACGAGCT
1 TATAAATTTCATATATGAAATGGATTGATATGACTAAAGTTTATACGAGCT
8605133 TA
1 TA
8605135 CTAAGCATTC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.39, C:0.08, G:0.14, T:0.38
Consensus pattern (51 bp):
TATAAATTTCATATATGAAATGGATTGATATGACTAAAGTTTATACGAGCT
Found at i:8605390 original size:15 final size:16
Alignment explanation
Indices: 8605370--8605399 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8605360 TGGTGCCTTG
8605370 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
8605385 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
8605400 AGCATGTCTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:8611545 original size:49 final size:48
Alignment explanation
Indices: 8611492--8611598 Score: 117
Period size: 49 Copynumber: 2.2 Consensus size: 48
8611482 ATGCATGGTT
*
8611492 TAATTAAAATGCAAACTAAATAAACA-AATGAGCTACATAATGCATGACA
1 TAATTAAAATGC-AACTAAATAAACATAA-GAGCTACATAATACATGACA
* * * * * *
8611541 TAATTTAATATGCAAGTTAATTAACATAAGAGTTACTTAATACATGACA
1 TAA-TTAAAATGCAACTAAATAAACATAAGAGCTACATAATACATGACA
8611590 TAATTAAAA
1 TAATTAAAA
8611599 CACAAACTTT
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
48 5 0.10
49 33 0.69
50 10 0.21
ACGTcount: A:0.50, C:0.11, G:0.09, T:0.29
Consensus pattern (48 bp):
TAATTAAAATGCAACTAAATAAACATAAGAGCTACATAATACATGACA
Found at i:8611700 original size:32 final size:32
Alignment explanation
Indices: 8611652--8611718 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
8611642 TTAAATGTAG
* *
8611652 AACACATTATGTAAGTCATAATTAAATATGCA
1 AACACATAATGCAAGTCATAATTAAATATGCA
8611684 AACACATAATGCAAGTCATAATTAAATATGCA
1 AACACATAATGCAAGTCATAATTAAATATGCA
8611716 AAC
1 AAC
8611719 TTATTAAATG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.49, C:0.15, G:0.09, T:0.27
Consensus pattern (32 bp):
AACACATAATGCAAGTCATAATTAAATATGCA
Found at i:8619529 original size:29 final size:28
Alignment explanation
Indices: 8619491--8619545 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 28
8619481 TCTTCTCAAA
8619491 TTTAAAATTTAGTCT-TTATACTTTTATT
1 TTTAAAATTTAGTCTCTT-TACTTTTATT
8619519 TTTAAGAATTTAGTCTCTTTACTTTTA
1 TTTAA-AATTTAGTCTCTTTACTTTTA
8619546 AGATTTCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
28 5 0.20
29 18 0.72
30 2 0.08
ACGTcount: A:0.27, C:0.09, G:0.05, T:0.58
Consensus pattern (28 bp):
TTTAAAATTTAGTCTCTTTACTTTTATT
Found at i:8623280 original size:17 final size:15
Alignment explanation
Indices: 8623258--8623293 Score: 54
Period size: 17 Copynumber: 2.3 Consensus size: 15
8623248 GATGTGAACA
8623258 TATTTTATTTAGATTTT
1 TATTTTATTT--ATTTT
8623275 TATTTTATTTATTTT
1 TATTTTATTTATTTT
8623290 TATT
1 TATT
8623294 ATCTTTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 9 0.47
17 10 0.53
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (15 bp):
TATTTTATTTATTTT
Found at i:8624136 original size:18 final size:18
Alignment explanation
Indices: 8624085--8624137 Score: 65
Period size: 18 Copynumber: 2.9 Consensus size: 18
8624075 GCAAAGCCAA
8624085 ACTGAGCATGTGGG-CCAC
1 ACTG-GCATGTGGGCCCAC
*
8624103 ACTGGCGTGTGGGCCCAC
1 ACTGGCATGTGGGCCCAC
8624121 A-TGGGCATGTGGGCCCA
1 ACT-GGCATGTGGGCCCA
8624138 TTATACTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 9 0.29
18 22 0.71
ACGTcount: A:0.17, C:0.28, G:0.38, T:0.17
Consensus pattern (18 bp):
ACTGGCATGTGGGCCCAC
Found at i:8626172 original size:131 final size:129
Alignment explanation
Indices: 8625736--8626221 Score: 397
Period size: 131 Copynumber: 3.7 Consensus size: 129
8625726 TTGCCTCACC
* * * * *
8625736 TTAGAAAATACGAGTGAAATTCCGAAGAGATATTCGATTATTTTGAACAAACGAGAAATTACAAC
1 TTAGAAAACATGAGTGAAATTCCGAAGGGATATTCGATTATTTTGAACAAACAAGAAATCACAAC
* * * * *
8625801 CCAGCACGATAGGGTACTATTCCCCGAATTGTCAAACATCGACTATTTCTTTCGTTTTAAAGGGT
66 CCAGCACGATAGGGCACGATT-CCCGAATTGTCAAACACCGAATA-TTCCTTCGTTTTAAA-GGT
8625866 TT
128 TT
** * * ** * * * * *
8625868 TTAGAAAATGTGAGTGAAATTTCGAAGGGATCTTCGATCGTTTAGAAAAAATGAA-AAAGCGCAA
1 TTAGAAAACATGAGTGAAATTCCGAAGGGATATTCGATTATTTTGAACAAA-CAAGAAATCACAA
* * * * * *
8625932 CCCAGCACGATAGGGCACGATTCTCAAATCGCCAAAC-CTCGAACA-TCCTTTGTTTTGAAAGGT
65 CCCAGCACGATAGGGCACGATTCCCGAATTGTCAAACAC-CGAATATTCCTTCGTTTT-AAAGGT
8625995 TT
128 TT
* * * * *
8625997 TTA-ATAAACATGAGTGAAA-ACCTAAAGGAATATTCGATTGTTTTGAGCAAACAAGAAATCACA
1 TTAGA-AAACATGAGTGAAATTCC-GAAGGGATATTCGATTATTTTGAACAAACAAGAAATCACA
* * *
8626060 ACCCAGCACGATAGGGCATGATTCCCGAATTGTTAAACACCGAGTATTGCCTTCGTTTTAAAGGA
64 ACCCAGCACGATAGGGCACGATTCCCGAATTGTCAAACACCGAATATT-CCTTCGTTTTAAAGG-
8626125 TTT
127 TTT
* * * ** * * ** **
8626128 TTAGAAGACCTAAGTGAAATTTTGAAGGGATATTTGATTATTTTGAGCAAACGCGAAATTGCAAC
1 TTAGAAAACATGAGTGAAATTCCGAAGGGATATTCGATTATTTTGAACAAACAAGAAATCACAAC
* * *
8626193 CCAGTATGTTAGGGCACGATTCCGCGAAT
66 CCAGCACGATAGGGCACGATTCC-CGAAT
8626222 CGCCAAATAT
Statistics
Matches: 275, Mismatches: 66, Indels: 26
0.75 0.18 0.07
Matches are distributed among these distances:
128 4 0.01
129 92 0.33
130 10 0.04
131 94 0.34
132 74 0.27
133 1 0.00
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (129 bp):
TTAGAAAACATGAGTGAAATTCCGAAGGGATATTCGATTATTTTGAACAAACAAGAAATCACAAC
CCAGCACGATAGGGCACGATTCCCGAATTGTCAAACACCGAATATTCCTTCGTTTTAAAGGTTT
Found at i:8629633 original size:45 final size:44
Alignment explanation
Indices: 8629441--8629641 Score: 129
Period size: 45 Copynumber: 4.5 Consensus size: 44
8629431 TGGTGGCTTA
*
8629441 AATCTGATTCACTGCAACTTCAGGAAGCCAAGATTCACCGTCTTC
1 AATCTGCTTCACTGCAACTTCAGGAAGCCAAGA-TCACCGTCTTC
* * * ** ***
8629486 GATCTGCTTCATTGTAACTTCAGGGAA-ATAAGATCTAAAAT-TTC
1 AATCTGCTTCACTGCAACTTCA-GGAAGCCAAGATC-ACCGTCTTC
* * * * * * * *** * *
8629530 AACCTACTCCACTACAACTTCAGGGAGCTAGGAT-GGTGGCTTA
1 AATCTGCTTCACTGCAACTTCAGGAAGCCAAGATCACCGTCTTC
* *
8629573 AATCTACTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTC
1 AATCTGCTTCACTGCAACTTCAGGAAGCCAAGA-TCACCGTCTTC
*
8629618 GATCTGCTTCACTGCAACTTCAGG
1 AATCTGCTTCACTGCAACTTCAGG
8629642 GAAATAAGAT
Statistics
Matches: 113, Mismatches: 37, Indels: 12
0.70 0.23 0.07
Matches are distributed among these distances:
43 32 0.28
44 26 0.23
45 51 0.45
46 4 0.04
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (44 bp):
AATCTGCTTCACTGCAACTTCAGGAAGCCAAGATCACCGTCTTC
Found at i:8629687 original size:44 final size:44
Alignment explanation
Indices: 8629627--8629774 Score: 129
Period size: 44 Copynumber: 3.4 Consensus size: 44
8629617 CGATCTGCTT
*
8629627 CACTGCAACTTCAGGGAAATAAGATCTAAAATTTCAGCCTACTC
1 CACTACAACTTCAGGGAAATAAGATCTAAAATTTCAGCCTACTC
* ** * * *** * ** * *
8629671 CACTACAACTTTAGGGAGCTAGGATGGT--GGCTTAAATCTGCTT
1 CACTACAACTTCAGGGAAATAAGAT-CTAAAATTTCAGCCTACTC
*
8629714 CACTGCAACTTCAGGGAAATAAGATCTAAAATTTCAGCCTACTC
1 CACTACAACTTCAGGGAAATAAGATCTAAAATTTCAGCCTACTC
*
8629758 CACTACAACTTTAGGGA
1 CACTACAACTTCAGGGA
8629775 GCTAGGATGG
Statistics
Matches: 71, Mismatches: 30, Indels: 6
0.66 0.28 0.06
Matches are distributed among these distances:
42 1 0.01
43 27 0.38
44 42 0.59
45 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (44 bp):
CACTACAACTTCAGGGAAATAAGATCTAAAATTTCAGCCTACTC
Found at i:8629717 original size:87 final size:87
Alignment explanation
Indices: 8629619--8629813 Score: 390
Period size: 87 Copynumber: 2.2 Consensus size: 87
8629609 GCCGTCTTCG
8629619 ATCTGCTTCACTGCAACTTCAGGGAAATAAGATCTAAAATTTCAGCCTACTCCACTACAACTTTA
1 ATCTGCTTCACTGCAACTTCAGGGAAATAAGATCTAAAATTTCAGCCTACTCCACTACAACTTTA
8629684 GGGAGCTAGGATGGTGGCTTAA
66 GGGAGCTAGGATGGTGGCTTAA
8629706 ATCTGCTTCACTGCAACTTCAGGGAAATAAGATCTAAAATTTCAGCCTACTCCACTACAACTTTA
1 ATCTGCTTCACTGCAACTTCAGGGAAATAAGATCTAAAATTTCAGCCTACTCCACTACAACTTTA
8629771 GGGAGCTAGGATGGTGGCTTAA
66 GGGAGCTAGGATGGTGGCTTAA
8629793 ATCTGCTTCACTGCAACTTCA
1 ATCTGCTTCACTGCAACTTCA
8629814 AAAAGCCAAG
Statistics
Matches: 108, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 108 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.28
Consensus pattern (87 bp):
ATCTGCTTCACTGCAACTTCAGGGAAATAAGATCTAAAATTTCAGCCTACTCCACTACAACTTTA
GGGAGCTAGGATGGTGGCTTAA
Found at i:8629738 original size:132 final size:132
Alignment explanation
Indices: 8629225--8629728 Score: 819
Period size: 132 Copynumber: 3.8 Consensus size: 132
8629215 AGCTTCAATA
* ** * * *
8629225 TGCTCCACTGCAACTTCAGGGTGACAAGATCTACAATCTTTAGCCTACTCCACTACAACTTTAGG
1 TGCTTCACTGCAACTTCAGGGAAATAAGATCTAAAAT-TTCAGCCTACTCCACTACAACTTTAGG
* * * *
8629290 GAGCTATGATGGTGGCTTAAATCTGTTTCATTGCAACTTCGGGAAGCCAAGATTCGCCGTCTTCG
65 GAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTCG
8629355 ATC
130 ATC
* *
8629358 TGCTTCACTGCAACTTCAGTGAAATAAGACCTAAAATTTCAGCCTACTCCACTACAACTTTAGGG
1 TGCTTCACTGCAACTTCAGGGAAATAAGATCTAAAATTTCAGCCTACTCCACTACAACTTTAGGG
* * *
8629423 AGCTGGGATGGTGGCTTAAATCTGATTCACTGCAACTTCAGGAAGCCAAGATTCACCGTCTTCGA
66 AGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTCGA
8629488 TC
131 TC
* * * *
8629490 TGCTTCATTGTAACTTCAGGGAAATAAGATCTAAAATTTCAACCTACTCCACTACAACTTCAGGG
1 TGCTTCACTGCAACTTCAGGGAAATAAGATCTAAAATTTCAGCCTACTCCACTACAACTTTAGGG
*
8629555 AGCTAGGATGGTGGCTTAAATCTACTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTCGA
66 AGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTCGA
8629620 TC
131 TC
8629622 TGCTTCACTGCAACTTCAGGGAAATAAGATCTAAAATTTCAGCCTACTCCACTACAACTTTAGGG
1 TGCTTCACTGCAACTTCAGGGAAATAAGATCTAAAATTTCAGCCTACTCCACTACAACTTTAGGG
8629687 AGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGG
66 AGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGG
8629729 GAAATAAGAT
Statistics
Matches: 342, Mismatches: 29, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
132 312 0.91
133 30 0.09
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (132 bp):
TGCTTCACTGCAACTTCAGGGAAATAAGATCTAAAATTTCAGCCTACTCCACTACAACTTTAGGG
AGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTCGA
TC
Found at i:8629757 original size:219 final size:219
Alignment explanation
Indices: 8629487--8630090 Score: 1073
Period size: 219 Copynumber: 2.8 Consensus size: 219
8629477 ACCGTCTTCG
* * * *
8629487 ATCTGCTTCATTGTAACTTCAGGGAAATAAGATCTAAAATTTCAACCTACTCCACTACAACTTCA
1 ATCTGCTTCACTGCAACTTCAGGGAAATAAGATCTAAAATTTCAGCCTACTCCACTACAACTTTA
8629552 GGGAGCTAGGATGGTGGCTTAAATCTACTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTT
66 GGGAGCTAGGATGGTGGCTTAAATCTACTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTT
*
8629617 CGATCTGCTTCACTGCAACTTCAGGGAAATAAGATCTAAAATTTCAGCCTACTCCACTACAACTT
131 CGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCTAAAATTTCAGCCTACTCCACTACAACTT
8629682 TAGGGAGCTAGGATGGTGGCTTAA
196 TAGGGAGCTAGGATGGTGGCTTAA
8629706 ATCTGCTTCACTGCAACTTCAGGGAAATAAGATCTAAAATTTCAGCCTACTCCACTACAACTTTA
1 ATCTGCTTCACTGCAACTTCAGGGAAATAAGATCTAAAATTTCAGCCTACTCCACTACAACTTTA
* **
8629771 GGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAAAAAGCCAAGATTCGCCGTCTT
66 GGGAGCTAGGATGGTGGCTTAAATCTACTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTT
*
8629836 CGATCTGCTTCACTGCAACTTCAAGGAAACAAGATCTAAAATTTCAGCCTACTCCACTACAACTT
131 CGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCTAAAATTTCAGCCTACTCCACTACAACTT
8629901 TAGGGAGCTAGGATGGTGGCTTAA
196 TAGGGAGCTAGGATGGTGGCTTAA
* *
8629925 ATCTGCTTCACTGCAACTTCAAGGAAACAAGATCTAAAATTTCAGCCTACTCCACTACAACTTTA
1 ATCTGCTTCACTGCAACTTCAGGGAAATAAGATCTAAAATTTCAGCCTACTCCACTACAACTTTA
* *
8629990 GGGAGCTAGGATGGTGGCTTAAATATACTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTTTT
66 GGGAGCTAGGATGGTGGCTTAAATCTACTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTT
* *
8630055 CGATTTGCTTCACTGCAACTTCAGGGAAACACGATC
131 CGATCTGCTTCACTGCAACTTCAGGGAAACAAGATC
8630091 GGTAGGATTT
Statistics
Matches: 366, Mismatches: 19, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
219 366 1.00
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.27
Consensus pattern (219 bp):
ATCTGCTTCACTGCAACTTCAGGGAAATAAGATCTAAAATTTCAGCCTACTCCACTACAACTTTA
GGGAGCTAGGATGGTGGCTTAAATCTACTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTT
CGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCTAAAATTTCAGCCTACTCCACTACAACTT
TAGGGAGCTAGGATGGTGGCTTAA
Found at i:8629849 original size:264 final size:263
Alignment explanation
Indices: 8629227--8629863 Score: 645
Period size: 264 Copynumber: 2.4 Consensus size: 263
8629217 CTTCAATATG
* ** * * * * ***
8629227 CTCCACTGCAACTTCAGGGTGACAAGATCTACAATCTTTAGCCTACTCCACTACAACTTTAGGGA
1 CTCCACTACAACTTCAGGGAAATAAGATCTA-AA-CTTAAACCTACTCCACTACAACTTCAAAAA
* * ** * * *
8629292 GCTATGATGGTGGCTTAAATCTGTTTCATTGCAACTTCGGGAAGCCAAGATTCGCCGTCTTCGAT
64 GCCAAGATGCCGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTCGAT
*
8629357 CTGCTTCACTGCAACTTCAGTGAAATAAGACCTAAAATTTCAGCCTACTCCACTACAACTTTAGG
129 CTGCTTCACTGCAACTTCAGGGAAATAAGACCTAAAATTTCAGCCTACTCCACTACAACTTTAGG
* * ***
8629422 GAGCTGGGATGGTGGCTTAAATCTGATTCACTGCAACTTCAGGAAGCCAAGATTCACCGTCTTCG
194 GAGCTAGGATGGTGGCTTAAATCTGATTCACTGCAACTTCAGGAAGACAAGATTCAAAATCTTCG
* *
8629487 ATCTG
259 ACCTA
* * ** * * ***
8629492 CTTCATTGTAACTTCAGGGAAATAAGATCTAAAATTTCAACCTACTCCACTACAACTTCAGGGAG
1 CTCCACTACAACTTCAGGGAAATAAGATCT-AAACTTAAACCTACTCCACTACAACTTCAAAAAG
* * ** *
8629557 CTAGGATGGTGGCTTAAATCTACTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTCGATC
65 CCAAGATGCCGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTCGATC
*
8629622 TGCTTCACTGCAACTTCAGGGAAATAAGATCTAAAATTTCAGCCTACTCCACTACAACTTTAGGG
130 TGCTTCACTGCAACTTCAGGGAAATAAGACCTAAAATTTCAGCCTACTCCACTACAACTTTAGGG
* *
8629687 AGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGGAA-ATAAGA-TCTAAAAT-TTC
195 AGCTAGGATGGTGGCTTAAATCTGATTCACTGCAACTTCA-GGAAGACAAGATTC-AAAATCTTC
8629749 -AGCCTA
258 GA-CCTA
* ** * * ** * * * *
8629755 CTCCACTACAACTTTAGGGAGCTAGGATGGT-GGCTTAAATCTGCTTCACTGCAACTTCAAAAAG
1 CTCCACTACAACTTCAGGGAAATAAGAT-CTAAACTTAAACCTACTCCACTACAACTTCAAAAAG
* **
8629819 CCAAGATTCGCCGTCTTCGATCTGCTTCACTGCAACTTCAAGGAA
65 CCAAGA-T-GCCGGCTTAAATCTGCTTCACTGCAACTTC-AGGAA
8629864 ACAAGATCTA
Statistics
Matches: 310, Mismatches: 54, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
262 27 0.09
263 28 0.09
264 219 0.71
265 35 0.11
266 1 0.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.28
Consensus pattern (263 bp):
CTCCACTACAACTTCAGGGAAATAAGATCTAAACTTAAACCTACTCCACTACAACTTCAAAAAGC
CAAGATGCCGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTCGATCT
GCTTCACTGCAACTTCAGGGAAATAAGACCTAAAATTTCAGCCTACTCCACTACAACTTTAGGGA
GCTAGGATGGTGGCTTAAATCTGATTCACTGCAACTTCAGGAAGACAAGATTCAAAATCTTCGAC
CTA
Found at i:8629852 original size:132 final size:132
Alignment explanation
Indices: 8629706--8629946 Score: 464
Period size: 132 Copynumber: 1.8 Consensus size: 132
8629696 GGTGGCTTAA
* *
8629706 ATCTGCTTCACTGCAACTTCAGGGAAATAAGATCTAAAATTTCAGCCTACTCCACTACAACTTTA
1 ATCTGCTTCACTGCAACTTCAAGGAAACAAGATCTAAAATTTCAGCCTACTCCACTACAACTTTA
8629771 GGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAAAAAGCCAAGATTCGCCGTCTT
66 GGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAAAAAGCCAAGATTCGCCGTCTT
8629836 CG
131 CG
8629838 ATCTGCTTCACTGCAACTTCAAGGAAACAAGATCTAAAATTTCAGCCTACTCCACTACAACTTTA
1 ATCTGCTTCACTGCAACTTCAAGGAAACAAGATCTAAAATTTCAGCCTACTCCACTACAACTTTA
8629903 GGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAA
66 GGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAA
8629947 GGAAACAAGA
Statistics
Matches: 107, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
132 107 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.27
Consensus pattern (132 bp):
ATCTGCTTCACTGCAACTTCAAGGAAACAAGATCTAAAATTTCAGCCTACTCCACTACAACTTTA
GGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAAAAAGCCAAGATTCGCCGTCTT
CG
Found at i:8629984 original size:87 final size:87
Alignment explanation
Indices: 8629838--8630036 Score: 373
Period size: 87 Copynumber: 2.3 Consensus size: 87
8629828 GCCGTCTTCG
8629838 ATCTGCTTCACTGCAACTTCAAGGAAACAAGATCTAAAATTTCAGCCTACTCCACTACAACTTTA
1 ATCTGCTTCACTGCAACTTCAAGGAAACAAGATCTAAAATTTCAGCCTACTCCACTACAACTTTA
8629903 GGGAGCTAGGATGGTGGCTTAA
66 GGGAGCTAGGATGGTGGCTTAA
8629925 ATCTGCTTCACTGCAACTTCAAGGAAACAAGATCTAAAATTTCAGCCTACTCCACTACAACTTTA
1 ATCTGCTTCACTGCAACTTCAAGGAAACAAGATCTAAAATTTCAGCCTACTCCACTACAACTTTA
8629990 GGGAGCTAGGATGGTGGCTTAA
66 GGGAGCTAGGATGGTGGCTTAA
* *
8630012 ATATACTTCACTGCAACTTC-AGGAA
1 ATCTGCTTCACTGCAACTTCAAGGAA
8630037 GCCAAGATTC
Statistics
Matches: 110, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
86 5 0.05
87 105 0.95
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.27
Consensus pattern (87 bp):
ATCTGCTTCACTGCAACTTCAAGGAAACAAGATCTAAAATTTCAGCCTACTCCACTACAACTTTA
GGGAGCTAGGATGGTGGCTTAA
Found at i:8637167 original size:37 final size:37
Alignment explanation
Indices: 8637117--8637191 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
8637107 CTTCTATCTT
* *
8637117 ACCGCTCTTCACAGTATTTTCAATCATTTCCCCTGTC
1 ACCGCTCTTCACAGCATTTTCAATCATTTCCCCCGTC
* *
8637154 ACCGCTCTTCACAGCATTTTCGATTATTTCCCCCGTC
1 ACCGCTCTTCACAGCATTTTCAATCATTTCCCCCGTC
8637191 A
1 A
8637192 TTACTATATC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.19, C:0.36, G:0.09, T:0.36
Consensus pattern (37 bp):
ACCGCTCTTCACAGCATTTTCAATCATTTCCCCCGTC
Found at i:8642073 original size:131 final size:128
Alignment explanation
Indices: 8641637--8642116 Score: 385
Period size: 129 Copynumber: 3.7 Consensus size: 128
8641627 TTACCTCACC
* * * ** * * * * *
8641637 TTAGAAAATACGAGTGAAATTCCGAAGAGATATTCGATTATTTTGAACAAATGGGAAATTACAAC
1 TTAGAAAACATGAGTAAAATTCTAAAGGGATATTCGATTGTTTTGAACAAACGAGAAATCACAAC
* * * * *
8641702 CCAGCACGATAGGGTACTATTCCCCGAATTGTCAAACATCGACTATTTCTTTCGTTTTAAAGGGT
66 CCAGCACGATAGGGCACGATT-CCCGAATTGTCAAACA-CCAATA-TTCCTTCGTTTTAAA-GGT
8641767 TT
127 TT
* * * * * * * * * * *
8641769 TTAGAAAACGTGAGTGAAATTCCAAAGGGATCTTCGATCGTTTAGAAAAAATGAAAAAGCGCAAC
1 TTAGAAAACATGAGTAAAATTCTAAAGGGATATTCGATTGTTTTGAACAAACGAGAAATCACAAC
* * * * *
8641834 CCAGCACGATAGGGCACGATTCTCAAATCG-CTAAAC-CTCGAACA-TCCTTTGTTTTGAAAGGT
66 CCAGCACGATAGGGCACGATTCCCGAATTGTC-AAACAC-C-AATATTCCTTCGTTTT-AAAGGT
8641896 TT
127 TT
* * *
8641898 TTA-ATAAACATGAGTGAAAA-CCTAAAGGAATATTCGATTGTTTTGAGCAAACGAGAAATCACA
1 TTAGA-AAACATGAGT-AAAATTCTAAAGGGATATTCGATTGTTTTGAACAAACGAGAAATCACA
*
8641961 ACCCAGCACGATAGGGCATGATTCCCGAATTGTCAAACACCAAGTATTGCCTTCGTTTTAAAGGA
64 ACCCAGCACGATAGGGCACGATTCCCGAATTGTCAAACACCAA-TATT-CCTTCGTTTTAAAGG-
8642026 TTT
126 TTT
* * * * * * * * **
8642029 TTAGAAGACCTGAGTAAAATTTTGAAGGGATATTTGATTTTTTTGAGCAAACGCGAAATTGCAAC
1 TTAGAAAACATGAGTAAAATTCTAAAGGGATATTCGATTGTTTTGAACAAACGAGAAATCACAAC
* *
8642094 CCAACACGTTAGGGCACGATTCC
66 CCAGCACGATAGGGCACGATTCC
8642117 GCAAATCGCC
Statistics
Matches: 275, Mismatches: 59, Indels: 29
0.76 0.16 0.08
Matches are distributed among these distances:
128 3 0.01
129 92 0.33
130 19 0.07
131 91 0.33
132 70 0.25
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (128 bp):
TTAGAAAACATGAGTAAAATTCTAAAGGGATATTCGATTGTTTTGAACAAACGAGAAATCACAAC
CCAGCACGATAGGGCACGATTCCCGAATTGTCAAACACCAATATTCCTTCGTTTTAAAGGTTT
Found at i:8646233 original size:35 final size:35
Alignment explanation
Indices: 8646166--8646233 Score: 84
Period size: 35 Copynumber: 1.9 Consensus size: 35
8646156 TATATTTGTA
*
8646166 TCTGAAATGGGCTCTGGCCCAAATCTGTATCTGAT
1 TCTGAAATGGGCTCTGGCCCAAATCTGAATCTGAT
* * *
8646201 TCTGACATGGGCT-TAGGCCCAATTGTGAATCTG
1 TCTGAAATGGGCTCT-GGCCCAAATCTGAATCTG
8646234 TTTGATTTGT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
34 1 0.04
35 27 0.96
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (35 bp):
TCTGAAATGGGCTCTGGCCCAAATCTGAATCTGAT
Found at i:8649018 original size:24 final size:21
Alignment explanation
Indices: 8648991--8649049 Score: 66
Period size: 24 Copynumber: 2.7 Consensus size: 21
8648981 ATGAATATTT
8648991 TAAAAAATAATTTTGAAA-AA
1 TAAAAAATAATTTTGAAATAA
*
8649011 TAAATAAATAAAAATTATGAAATAA
1 TAAA-AAAT---AATTTTGAAATAA
8649036 TAAAAAATAATTTT
1 TAAAAAATAATTTT
8649050 ATTATTTTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
20 4 0.12
21 9 0.28
24 13 0.41
25 6 0.19
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.32
Consensus pattern (21 bp):
TAAAAAATAATTTTGAAATAA
Found at i:8649694 original size:34 final size:34
Alignment explanation
Indices: 8649590--8649695 Score: 103
Period size: 34 Copynumber: 3.2 Consensus size: 34
8649580 AATATAAAAT
* * *
8649590 TAAAATATTTGAAATTATTTTAATATAATCTAATA
1 TAAAAAATTTTAAA-TATTTTAATATAATTTAATA
* ** *
8649625 T-AAATA-TTT-AAT-TTCAAAATATAATTTAAAA
1 TAAAAAATTTTAAATATT-TTAATATAATTTAATA
8649656 TAAAAAATTTTAAATATTTTAATATAATTTAATA
1 TAAAAAATTTTAAATATTTTAATATAATTTAATA
8649690 TAAAAA
1 TAAAAA
8649696 TAATTATATT
Statistics
Matches: 57, Mismatches: 9, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
30 2 0.04
31 14 0.25
32 6 0.11
33 5 0.09
34 27 0.47
35 3 0.05
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.43
Consensus pattern (34 bp):
TAAAAAATTTTAAATATTTTAATATAATTTAATA
Found at i:8649763 original size:61 final size:58
Alignment explanation
Indices: 8649672--8649836 Score: 174
Period size: 57 Copynumber: 2.8 Consensus size: 58
8649662 ATTTTAAATA
* * * *
8649672 TTTTAATATAATTTA-ATATAAAAATAATTATATTAAAATATTAATAAATTATATATTTTTAT
1 TTTTATTA-AATTTATATTTAATAATAATTATATTAAAATATTAATAAA--AT-TATTTAT-T
* *
8649734 TTTTATTAAA-TTATATTTAATAATAATTATATTAAAATA-TGATTAAATTATTTATT
1 TTTTATTAAATTTATATTTAATAATAATTATATTAAAATATTAATAAAATTATTTATT
* ** *
8649790 TTTTATTAAATTTATTTTTAATAATAATCCTATTAAAATTTTAATAA
1 TTTTATTAAATTTATATTTAATAATAATTATATTAAAATATTAATAA
8649837 CAATAATCAT
Statistics
Matches: 88, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
56 11 0.12
57 31 0.35
58 6 0.07
60 8 0.09
61 25 0.28
62 7 0.08
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.52
Consensus pattern (58 bp):
TTTTATTAAATTTATATTTAATAATAATTATATTAAAATATTAATAAAATTATTTATT
Found at i:8649975 original size:44 final size:46
Alignment explanation
Indices: 8649919--8650006 Score: 121
Period size: 44 Copynumber: 2.0 Consensus size: 46
8649909 ACATCATTCA
8649919 ATTCAACCAAACA-TAAGAA-TATT-ATTACAAT-TCTATTTCATTTC
1 ATTCAACCAAACAGT-AGAATTATTGATTAC-ATCTCTATTTCATTTC
*
8649963 ATTCAACCAAACAGTTGAATTATTGATTACATCTCTATTTCATT
1 ATTCAACCAAACAGTAGAATTATTGATTACATCTCTATTTCATT
8650007 ACAATTATAT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
44 16 0.41
45 7 0.18
46 16 0.41
ACGTcount: A:0.38, C:0.18, G:0.05, T:0.40
Consensus pattern (46 bp):
ATTCAACCAAACAGTAGAATTATTGATTACATCTCTATTTCATTTC
Found at i:8654798 original size:15 final size:15
Alignment explanation
Indices: 8654778--8654816 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
8654768 TGAGGCAAAA
*
8654778 GAAAAAAAAAACTCT
1 GAAAAAAAAAACACT
8654793 GAAAAAAAAAACACT
1 GAAAAAAAAAACACT
8654808 GAAAAAAAA
1 GAAAAAAAA
8654817 TTCTTTGTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.74, C:0.10, G:0.08, T:0.08
Consensus pattern (15 bp):
GAAAAAAAAAACACT
Found at i:8655422 original size:20 final size:19
Alignment explanation
Indices: 8655386--8655434 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 19
8655376 AACATTGAGA
8655386 AATTATATATT-TGTGATATT
1 AATTATA-ATTATGTGAT-TT
8655406 -ATTATGAATTATGTGATTT
1 AATTAT-AATTATGTGATTT
8655425 AATTATAATT
1 AATTATAATT
8655435 TATCTTTACG
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
19 14 0.54
20 12 0.46
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (19 bp):
AATTATAATTATGTGATTT
Found at i:8655437 original size:20 final size:20
Alignment explanation
Indices: 8655397--8655434 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
8655387 ATTATATATT
8655397 TGTGATATTATTATGAATTA
1 TGTGATATTATTATGAATTA
8655417 TGTGAT-TTAATTAT-AATT
1 TGTGATATT-ATTATGAATT
8655435 TATCTTTACG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (20 bp):
TGTGATATTATTATGAATTA
Found at i:8659162 original size:26 final size:26
Alignment explanation
Indices: 8659125--8659208 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
8659115 TGATACAAAT
* *
8659125 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
8659151 TGATAATGGGTTAGGTAAATGTTTCG
1 TGATAATGGGTTAGGTAAATGTTTCA
8659177 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
8659203 TGATAA
1 TGATAA
8659209 GAATTTCATG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.32, C:0.05, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:8664119 original size:13 final size:13
Alignment explanation
Indices: 8664101--8664126 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8664091 CCAAAACCCA
8664101 CATGCTCGTGTGG
1 CATGCTCGTGTGG
8664114 CATGCTCGTGTGG
1 CATGCTCGTGTGG
8664127 GCTTATACAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.23, G:0.38, T:0.31
Consensus pattern (13 bp):
CATGCTCGTGTGG
Found at i:8665769 original size:42 final size:42
Alignment explanation
Indices: 8665723--8666555 Score: 1639
Period size: 42 Copynumber: 19.8 Consensus size: 42
8665713 TTGAAAAAAT
8665723 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
1 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
8665765 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
1 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
8665807 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
1 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
8665849 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
1 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
8665891 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
1 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
8665933 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
1 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
8665975 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
1 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
8666017 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
1 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
8666059 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
1 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
8666101 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
1 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
8666143 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
1 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
8666185 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
1 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
8666227 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
1 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
8666269 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
1 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
8666311 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
1 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
8666353 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
1 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
8666395 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
1 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
8666437 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
1 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
8666479 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAAC
1 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCAC-AAC
* *
8666522 GCCGCTAAAGGTCATGACTTTTAGCGGCACTTTT
1 GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTT
8666556 CCTAAAAATG
Statistics
Matches: 788, Mismatches: 2, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
42 753 0.96
43 35 0.04
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (42 bp):
GCTGCTAAAGGTCATGACTTTTAGCGGCGCTTTTACCACAAC
Found at i:8666640 original size:42 final size:43
Alignment explanation
Indices: 8666518--8666660 Score: 157
Period size: 43 Copynumber: 3.3 Consensus size: 43
8666508 CTTTTACCAC
** * * * *
8666518 AAACGCCGCTAAAGGTCATGACTTTTAGCGGCACTTTTCCTAA
1 AAACGCCGCTAAAAATCATAACCTTTAGCGACACTTTTTCTAA
* *
8666561 AAATGCCGCTAAAAATCATGACCTTTAGCGACACTTTTTCTAA
1 AAACGCCGCTAAAAATCATAACCTTTAGCGACACTTTTTCTAA
* *
8666604 AAACGCCGCTATATAA-CA-AACCTTTAGCGACGCTTTTT-TAA
1 AAACGCCGCTA-AAAATCATAACCTTTAGCGACACTTTTTCTAA
8666645 CAAACGCCGCTAAAAA
1 -AAACGCCGCTAAAAA
8666661 ATATAAACTT
Statistics
Matches: 87, Mismatches: 11, Indels: 6
0.84 0.11 0.06
Matches are distributed among these distances:
41 6 0.07
42 29 0.33
43 49 0.56
44 3 0.03
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (43 bp):
AAACGCCGCTAAAAATCATAACCTTTAGCGACACTTTTTCTAA
Found at i:8669264 original size:20 final size:20
Alignment explanation
Indices: 8669239--8669281 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
8669229 ATTTTGAAAT
8669239 ATTAATAAAATTATAATTTA
1 ATTAATAAAATTATAATTTA
8669259 ATTAATAAAATTATAATTTA
1 ATTAATAAAATTATAATTTA
8669279 ATT
1 ATT
8669282 TTCAATATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
ATTAATAAAATTATAATTTA
Found at i:8672250 original size:39 final size:39
Alignment explanation
Indices: 8672196--8672276 Score: 153
Period size: 39 Copynumber: 2.1 Consensus size: 39
8672186 AAACGTGGAG
8672196 ACACAAATGAGTGCAGAAAATTTTCGTTCGTATAAATAA
1 ACACAAATGAGTGCAGAAAATTTTCGTTCGTATAAATAA
*
8672235 ACACAAATGATTGCAGAAAATTTTCGTTCGTATAAATAA
1 ACACAAATGAGTGCAGAAAATTTTCGTTCGTATAAATAA
8672274 ACA
1 ACA
8672277 TATATTTTAA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.44, C:0.14, G:0.14, T:0.28
Consensus pattern (39 bp):
ACACAAATGAGTGCAGAAAATTTTCGTTCGTATAAATAA
Found at i:8672569 original size:15 final size:15
Alignment explanation
Indices: 8672546--8672596 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
8672536 ATACCCATGG
*
8672546 CCATTAAACCTTAAA
1 CCATAAAACCTTAAA
*
8672561 CCATAAAACCCTAAA
1 CCATAAAACCTTAAA
* *
8672576 TCAT-AGACCTTAAA
1 CCATAAAACCTTAAA
*
8672590 CCTTAAA
1 CCATAAA
8672597 TATTAAACCG
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
14 10 0.37
15 17 0.63
ACGTcount: A:0.47, C:0.27, G:0.02, T:0.24
Consensus pattern (15 bp):
CCATAAAACCTTAAA
Found at i:8672968 original size:81 final size:82
Alignment explanation
Indices: 8672833--8673000 Score: 207
Period size: 81 Copynumber: 2.1 Consensus size: 82
8672823 GTTATATGAC
* * *
8672833 TTTTAGCGGCGTTTTACCAAAAGCGTCGCTAATGCTCCGACTTTTAGCGGCG-TTTTACCAAAAG
1 TTTTAGCGGCATTTTACAAAAAACGTCGCTAATGCTCCGACTTTTAGCGGCGTTTTTACCAAAA-
*
8672897 TGCCGCTATTGCTCTGT-
65 CGCCGCTATTGCTCTGTG
* * * * **
8672914 TTTTAGCGGCATTTTAGCAAAAAACGTCGCTATTTCTCTG-TTTTTAGCGGCGTTTTTAGTAAAA
1 TTTTAGCGGCATTTTA-CAAAAAACGTCGCTAATGCTCCGACTTTTAGCGGCGTTTTTACCAAAA
8672978 CGCCGCTATTGCTCTGTG
65 CGCCGCTATTGCTCTGTG
8672996 TTTTA
1 TTTTA
8673001 TAATTTTTGC
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
81 42 0.57
82 32 0.43
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (82 bp):
TTTTAGCGGCATTTTACAAAAAACGTCGCTAATGCTCCGACTTTTAGCGGCGTTTTTACCAAAAC
GCCGCTATTGCTCTGTG
Found at i:8673000 original size:41 final size:40
Alignment explanation
Indices: 8672833--8673000 Score: 185
Period size: 41 Copynumber: 4.1 Consensus size: 40
8672823 GTTATATGAC
* * * *
8672833 TTTTAGCGGCGTTTTACCAAAAGCGTCGCTAATGCTCCGAC
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTG-T
*
8672874 TTTTAGCGGCGTTTTACCAAAAGTGCCGCTATTGCTCTGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGT
* * * * *
8672914 TTTTAGCGGCATTTTAGCAAAAAACGTCGCTATTTCTCTGT
1 TTTTAGCGGCGTTTTA-CCAAAAGCGCCGCTATTGCTCTGT
**
8672955 TTTTAGCGGCGTTTTTAGTAAAA-CGCCGCTATTGCTCTGT
1 TTTTAGCGGCG-TTTTACCAAAAGCGCCGCTATTGCTCTGT
8672995 GTTTTA
1 -TTTTA
8673001 TAATTTTTGC
Statistics
Matches: 108, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
40 30 0.28
41 73 0.68
42 5 0.05
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGT
Found at i:8673039 original size:12 final size:12
Alignment explanation
Indices: 8673024--8673049 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8673014 CTTTTTTGAT
8673024 AAAACGCCGCTA
1 AAAACGCCGCTA
8673036 AAAACGCCGCTA
1 AAAACGCCGCTA
8673048 AA
1 AA
8673050 GCCCTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:8673542 original size:38 final size:40
Alignment explanation
Indices: 8673468--8673542 Score: 100
Period size: 39 Copynumber: 1.9 Consensus size: 40
8673458 TTATACTAAT
* * *
8673468 TTTTTGTTTTGAATTTTTAAATTTATTTTGATAAAATGAG
1 TTTTTGTTTTCAACTTTTAAATTTATTTTGACAAAATGAG
*
8673508 TTTTT-TTTTCAACTTTTGAATTTA-TTTGACAAAAT
1 TTTTTGTTTTCAACTTTTAAATTTATTTTGACAAAAT
8673543 TTTAAAGTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 10 0.32
39 16 0.52
40 5 0.16
ACGTcount: A:0.29, C:0.04, G:0.09, T:0.57
Consensus pattern (40 bp):
TTTTTGTTTTCAACTTTTAAATTTATTTTGACAAAATGAG
Found at i:8674062 original size:125 final size:124
Alignment explanation
Indices: 8673873--8674215 Score: 503
Period size: 125 Copynumber: 2.7 Consensus size: 124
8673863 GAACGAAGAC
* * * *
8673873 AATCTATTTACCTTCACAATATAT-CAGAACGA-ATCATGTTCTTACCTACCCTAAAATTAAATG
1 AATCTATTTACCTTCACAATA-ATCCATAA-TATATCATGCTCTTACCTA-CCTAAAATTAGATG
8673936 AATTGATTTAGGTCAACAATTTAAAAAAACCTAATGACAAGCATTAAAAAGGGAGCGTGAAT
63 AATTGATTTAGGTCAACAATTTAAAAAAACCTAATGACAAGCATTAAAAAGGGAGCGTGAAT
8673998 AATCTATTTACCTTCACAATAATCCATAATATATCATGCTCTTACCTATCCTAAAATTAGATGAA
1 AATCTATTTACCTTCACAATAATCCATAATATATCATGCTCTTACCTA-CCTAAAATTAGATGAA
* *
8674063 TTGATTTAGGTCAACGATTTAAAAAACCCTAATGACAAGCATTAAAAAGGGAGCGTGAAT
65 TTGATTTAGGTCAACAATTTAAAAAAACCTAATGACAAGCATTAAAAAGGGAGCGTGAAT
* * * **
8674123 AATCTATTTACCTTCACAATAATCCATAATATACCATGCTCTTATCTACCTTAAACTTAGACAAA
1 AATCTATTTACCTTCACAATAATCCATAATATATCATGCTCTTACCTACC-TAAAATTAGATGAA
8674188 TTGATTTAGGTCAA-AGATTTAGAAAAAA
65 TTGATTTAGGTCAACA-ATTTA-AAAAAA
8674216 AGGCACCATG
Statistics
Matches: 199, Mismatches: 14, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
124 5 0.03
125 189 0.95
126 5 0.03
ACGTcount: A:0.41, C:0.17, G:0.11, T:0.31
Consensus pattern (124 bp):
AATCTATTTACCTTCACAATAATCCATAATATATCATGCTCTTACCTACCTAAAATTAGATGAAT
TGATTTAGGTCAACAATTTAAAAAAACCTAATGACAAGCATTAAAAAGGGAGCGTGAAT
Found at i:8675266 original size:18 final size:18
Alignment explanation
Indices: 8675239--8675274 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
8675229 GTCAATTACG
8675239 AGCGGGTCAAGAGGTGAC
1 AGCGGGTCAAGAGGTGAC
*
8675257 AGCGGTTCAAGAGGTGAC
1 AGCGGGTCAAGAGGTGAC
8675275 CTTACATGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.28, C:0.17, G:0.42, T:0.14
Consensus pattern (18 bp):
AGCGGGTCAAGAGGTGAC
Found at i:8678443 original size:5 final size:5
Alignment explanation
Indices: 8678435--8678459 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
8678425 TTTGGAAGAC
8678435 TATTT TATTT TATTT TATTT TATTT
1 TATTT TATTT TATTT TATTT TATTT
8678460 ATAATAGGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TATTT
Found at i:8682044 original size:21 final size:21
Alignment explanation
Indices: 8681997--8682044 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
8681987 TACTAACTTT
*
8681997 AAAAGTCAAATTACAAAGGAAC
1 AAAA-TCAAATTACAAAGAAAC
* * *
8682019 TAAATCAAGTTACAAATAAAC
1 AAAATCAAATTACAAAGAAAC
8682040 AAAAT
1 AAAAT
8682045 AAACAAAATG
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.60, C:0.12, G:0.08, T:0.19
Consensus pattern (21 bp):
AAAATCAAATTACAAAGAAAC
Found at i:8684601 original size:6 final size:6
Alignment explanation
Indices: 8684586--8684632 Score: 67
Period size: 6 Copynumber: 7.8 Consensus size: 6
8684576 TGGGTGCTAC
* * *
8684586 TGCCGG TGCTGG TGCTGG TGCCGG TGCTGG TGCCGG TGCCGG TGCCG
1 TGCCGG TGCCGG TGCCGG TGCCGG TGCCGG TGCCGG TGCCGG TGCCG
8684633 TTGAGGGGCC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.00, C:0.28, G:0.49, T:0.23
Consensus pattern (6 bp):
TGCCGG
Found at i:8684601 original size:18 final size:18
Alignment explanation
Indices: 8684578--8684618 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
8684568 TGAACTAGTG
8684578 GGTGCTACTGCCGGTGCT
1 GGTGCTACTGCCGGTGCT
**
8684596 GGTGCTGGTGCCGGTGCT
1 GGTGCTACTGCCGGTGCT
8684614 GGTGC
1 GGTGC
8684619 CGGTGCCGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.02, C:0.24, G:0.46, T:0.27
Consensus pattern (18 bp):
GGTGCTACTGCCGGTGCT
Found at i:8684623 original size:18 final size:18
Alignment explanation
Indices: 8684586--8684630 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
8684576 TGGGTGCTAC
*
8684586 TGCCGGTGCTGGTGCTGG
1 TGCCGGTGCTGGTGCCGG
8684604 TGCCGGTGCTGGTGCCGG
1 TGCCGGTGCTGGTGCCGG
8684622 TGCCGGTGC
1 TGCCGGTGC
8684631 CGTTGAGGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.00, C:0.27, G:0.49, T:0.24
Consensus pattern (18 bp):
TGCCGGTGCTGGTGCCGG
Found at i:8687181 original size:33 final size:33
Alignment explanation
Indices: 8687053--8687168 Score: 135
Period size: 33 Copynumber: 3.5 Consensus size: 33
8687043 TCAACATAAG
* *
8687053 TGATTGGAACATCTATCATGGCAGCTTCATCAA
1 TGATTGGAACATCTATCAGGGCAGCTTCATCAT
* * **
8687086 TGATTGGAACACCTAT-TGGTGCAGCTTTGTCAT
1 TGATTGGAACATCTATCAGG-GCAGCTTCATCAT
* * *
8687119 TTATTGCAACATCTATTAGGGCAGCTTCATCAT
1 TGATTGGAACATCTATCAGGGCAGCTTCATCAT
8687152 TGATTGGAACATCTATC
1 TGATTGGAACATCTATC
8687169 GGGGTCGTTT
Statistics
Matches: 66, Mismatches: 15, Indels: 4
0.78 0.18 0.05
Matches are distributed among these distances:
32 1 0.02
33 63 0.95
34 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (33 bp):
TGATTGGAACATCTATCAGGGCAGCTTCATCAT
Found at i:8691820 original size:101 final size:101
Alignment explanation
Indices: 8691645--8691949 Score: 601
Period size: 101 Copynumber: 3.0 Consensus size: 101
8691635 CATAACTTAT
*
8691645 ATGGAAAGTGTTGAATAACTTTTATAAAATCTTCTTTGGAGTTAAACTAGCTTCCAAAAGTAAAT
1 ATGGAAAGTGTTGAATAACTTTTATAAAATCTTCTTTAGAGTTAAACTAGCTTCCAAAAGTAAAT
8691710 TTGCTATTAATTTAAGTGTTGATTTACAAGTAAACA
66 TTGCTATTAATTTAAGTGTTGATTTACAAGTAAACA
8691746 ATGGAAAGTGTTGAATAACTTTTATAAAATCTTCTTTAGAGTTAAACTAGCTTCCAAAAGTAAAT
1 ATGGAAAGTGTTGAATAACTTTTATAAAATCTTCTTTAGAGTTAAACTAGCTTCCAAAAGTAAAT
8691811 TTGCTATTAATTTAAGTGTTGATTTACAAGTAAACA
66 TTGCTATTAATTTAAGTGTTGATTTACAAGTAAACA
8691847 ATGGAAAGTGTTGAATAACTTTTATAAAATCTTCTTTAGAGTTAAACTAGCTTCCAAAAGTAAAT
1 ATGGAAAGTGTTGAATAACTTTTATAAAATCTTCTTTAGAGTTAAACTAGCTTCCAAAAGTAAAT
8691912 TTGCTATTAATTTAAGTGTTGATTTACAAGTAAACA
66 TTGCTATTAATTTAAGTGTTGATTTACAAGTAAACA
8691948 AT
1 AT
8691950 AGCTTATAAA
Statistics
Matches: 203, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
101 203 1.00
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (101 bp):
ATGGAAAGTGTTGAATAACTTTTATAAAATCTTCTTTAGAGTTAAACTAGCTTCCAAAAGTAAAT
TTGCTATTAATTTAAGTGTTGATTTACAAGTAAACA
Found at i:8694343 original size:20 final size:20
Alignment explanation
Indices: 8694313--8694359 Score: 85
Period size: 20 Copynumber: 2.3 Consensus size: 20
8694303 ATTACAAATT
8694313 TTGATCTTTCTAAATCACTAG
1 TTGA-CTTTCTAAATCACTAG
8694334 TTGACTTTCTAAATCACTAG
1 TTGACTTTCTAAATCACTAG
8694354 TTGACT
1 TTGACT
8694360 AAGTATGTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 22 0.85
21 4 0.15
ACGTcount: A:0.28, C:0.19, G:0.11, T:0.43
Consensus pattern (20 bp):
TTGACTTTCTAAATCACTAG
Found at i:8695947 original size:174 final size:175
Alignment explanation
Indices: 8695622--8695975 Score: 608
Period size: 174 Copynumber: 2.0 Consensus size: 175
8695612 TGAATAGCAT
8695622 ATATCTTTATAATTTTTTAAATGATTAAATCAAAATTTTATCATTTTTAGGAGGCCAAAGTACAA
1 ATATCTTTATAATTTTTTAAATGATTAAATCAAAATTTTATCATTTTTAGGAGGCCAAAGTACAA
8695687 TTTCACATTTACTAATTTAAAACTTTAAAGAAAATTAAAAGGCCTAAATGGAAAATTTACCATTT
66 TTTCACATTTACTAATTTAAAACTTTAAAGAAAATTAAAAGGCCTAAATGGAAAATTTACCATTT
8695752 TAAAGGGGATTAGGGCCTTGCCAGCCCCCTTGGCTATGCCCCAAG
131 TAAAGGGGATTAGGGCCTTGCCAGCCCCCTTGGCTATGCCCCAAG
* *
8695797 ATATCTTTATAA-TTTTTAAATTATTAAATCAAAATTTTATCATTTTTAGGGGGCCAAAGTACAA
1 ATATCTTTATAATTTTTTAAATGATTAAATCAAAATTTTATCATTTTTAGGAGGCCAAAGTACAA
* *
8695861 TTTTACATTTACTAATTTAAAACTTTAAA-AAAATTAAAAGGCCTAAATGGAAAGTTTACCATTT
66 TTTCACATTTACTAATTTAAAACTTTAAAGAAAATTAAAAGGCCTAAATGGAAAATTTACCATTT
* *
8695925 TAAGGGGGATT-GGAGCCCTTGCCAGCCCCCTTGGCTATGCCCTAAG
131 TAAAGGGGATTAGG-G-CCTTGCCAGCCCCCTTGGCTATGCCCCAAG
8695971 -TATCT
1 ATATCT
8695976 ATACGTAGAT
Statistics
Matches: 171, Mismatches: 6, Indels: 6
0.93 0.03 0.03
Matches are distributed among these distances:
172 2 0.01
173 50 0.29
174 107 0.63
175 12 0.07
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.35
Consensus pattern (175 bp):
ATATCTTTATAATTTTTTAAATGATTAAATCAAAATTTTATCATTTTTAGGAGGCCAAAGTACAA
TTTCACATTTACTAATTTAAAACTTTAAAGAAAATTAAAAGGCCTAAATGGAAAATTTACCATTT
TAAAGGGGATTAGGGCCTTGCCAGCCCCCTTGGCTATGCCCCAAG
Found at i:8702155 original size:11 final size:11
Alignment explanation
Indices: 8702112--8702163 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
8702102 ATTCAAATAA
8702112 ATTTTA-TTTT
1 ATTTTATTTTT
* *
8702122 ATTTCTCTTTTA
1 ATTT-TATTTTT
*
8702134 ATTTAATTTTT
1 ATTTTATTTTT
8702145 ATTTTATTTTT
1 ATTTTATTTTT
*
8702156 AGTTTATT
1 ATTTTATT
8702164 ATGATGTATT
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
10 4 0.12
11 22 0.67
12 7 0.21
ACGTcount: A:0.21, C:0.04, G:0.02, T:0.73
Consensus pattern (11 bp):
ATTTTATTTTT
Found at i:8702810 original size:88 final size:87
Alignment explanation
Indices: 8702650--8702817 Score: 221
Period size: 88 Copynumber: 1.9 Consensus size: 87
8702640 CTTGAATTGA
* * **
8702650 ATTTATTTTAATTTTGGCCCTAGGATTTAGATTTATGTTTTAATAGATTTTATTAGATTTTAGTT
1 ATTTATTTTAATTTTAGCCCTAGGATTTAGATTTATGCTTTAATAGATTCAATTAGATTTTAGTT
8702715 CAAAATTTAGGTTATGGATCAG
66 CAAAATTTAGGTTATGGATCAG
* * * *
8702737 ATTTATTTTATTTTTAGCCCTATGATTTATATTT-TGGGCTTTAATATATTCAATTAGATTTTAG
1 ATTTATTTTAATTTTAGCCCTAGGATTTAGATTTAT--GCTTTAATAGATTCAATTAGATTTTAG
* *
8702801 TTTAGAATTTAGGTTAT
64 TTCAAAATTTAGGTTAT
8702818 AAATATTCGT
Statistics
Matches: 69, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
86 1 0.01
87 30 0.43
88 38 0.55
ACGTcount: A:0.28, C:0.06, G:0.14, T:0.52
Consensus pattern (87 bp):
ATTTATTTTAATTTTAGCCCTAGGATTTAGATTTATGCTTTAATAGATTCAATTAGATTTTAGTT
CAAAATTTAGGTTATGGATCAG
Found at i:8705593 original size:46 final size:48
Alignment explanation
Indices: 8705474--8705695 Score: 212
Period size: 46 Copynumber: 4.8 Consensus size: 48
8705464 TATTTGAGTT
* * *
8705474 CCGAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAC-AGGCA
* ** *
8705520 TCCGAACTCGTTGAGTTGAGTTTGAGTTCACTTATGGATGCAA-ATGC-
1 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACAGGCA
* * *
8705567 CCGAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAC-AGGCA
* ** *
8705613 TCCGAACTCGTTGAGTTGAGTTTGAGTTCACTTATGGATGCAA-ATGC-
1 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACAGGCA
8705660 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
8705696 GCGGGTTACA
Statistics
Matches: 141, Mismatches: 24, Indels: 21
0.76 0.13 0.11
Matches are distributed among these distances:
43 6 0.04
45 5 0.04
46 58 0.41
47 50 0.35
48 10 0.07
50 12 0.09
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (48 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACAGGCA
Found at i:8705633 original size:93 final size:93
Alignment explanation
Indices: 8705474--8705687 Score: 428
Period size: 93 Copynumber: 2.3 Consensus size: 93
8705464 TATTTGAGTT
8705474 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGA
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGA
8705539 GTTTGAGTTCACTTATGGATGCAAATGC
66 GTTTGAGTTCACTTATGGATGCAAATGC
8705567 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGA
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGA
8705632 GTTTGAGTTCACTTATGGATGCAAATGC
66 GTTTGAGTTCACTTATGGATGCAAATGC
8705660 CCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTC
8705688 ACTTATGGGC
Statistics
Matches: 121, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
93 121 1.00
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAACTCGTTGAGTTGA
GTTTGAGTTCACTTATGGATGCAAATGC
Found at i:8705641 original size:47 final size:47
Alignment explanation
Indices: 8705473--8705633 Score: 195
Period size: 47 Copynumber: 3.4 Consensus size: 47
8705463 ATATTTGAGT
*
8705473 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
** * * * *
8705520 TCCGAACTCGTTGAGTTGAGTTTGAGTTCACTTATGGATGCAA--ATGC-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
*
8705567 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
8705613 TCCGAACTCGTTGAGTTGAGT
1 TCCGAACTCGTTGAGTTGAGT
8705634 TTGAGTTCAC
Statistics
Matches: 92, Mismatches: 15, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
43 6 0.07
45 5 0.05
46 25 0.27
47 45 0.49
48 5 0.05
50 6 0.07
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.30
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
Found at i:8705911 original size:12 final size:12
Alignment explanation
Indices: 8705894--8705921 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
8705884 AGCAAAACAG
8705894 GTTTTTAGCGGC
1 GTTTTTAGCGGC
8705906 GTTTTTAGCGGC
1 GTTTTTAGCGGC
8705918 GTTT
1 GTTT
8705922 GAATGAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.14, G:0.32, T:0.46
Consensus pattern (12 bp):
GTTTTTAGCGGC
Found at i:8705974 original size:39 final size:40
Alignment explanation
Indices: 8705927--8706014 Score: 124
Period size: 39 Copynumber: 2.2 Consensus size: 40
8705917 CGTTTGAATG
8705927 AAAAACGCCACTAAAGAACGAGCATTAGCGGCGC-TTTTC
1 AAAAACGCCACTAAAGAACGAGCATTAGCGGCGCTTTTTC
* ** * *
8705966 AAAAACGCCGCTAAAGATTGAGTATTAGCGGCGCTTTTTT
1 AAAAACGCCACTAAAGAACGAGCATTAGCGGCGCTTTTTC
8706006 AAAAACGCC
1 AAAAACGCC
8706015 GCTATATGTA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
39 30 0.70
40 13 0.30
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (40 bp):
AAAAACGCCACTAAAGAACGAGCATTAGCGGCGCTTTTTC
Found at i:8706034 original size:40 final size:40
Alignment explanation
Indices: 8705927--8706044 Score: 109
Period size: 40 Copynumber: 3.0 Consensus size: 40
8705917 CGTTTGAATG
*
8705927 AAAAACGCCACTAAAGA-ACGAGC-ATTAGCGGCGC-TTTTC
1 AAAAACGCCGCTAAAGATAC-A-CTATTAGCGGCGCTTTTTC
** * *
8705966 AAAAACGCCGCTAAAGATTGAGTATTAGCGGCGCTTTTTT
1 AAAAACGCCGCTAAAGATACACTATTAGCGGCGCTTTTTC
* * *
8706006 AAAAACGCCGCTATATG-TACACTTTTAGCGGCACTTTTT
1 AAAAACGCCGCTA-AAGATACACTATTAGCGGCGCTTTTT
8706045 AGAAAGCGCT
Statistics
Matches: 64, Mismatches: 11, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
39 28 0.44
40 34 0.53
41 2 0.03
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.27
Consensus pattern (40 bp):
AAAAACGCCGCTAAAGATACACTATTAGCGGCGCTTTTTC
Found at i:8706622 original size:7 final size:7
Alignment explanation
Indices: 8706612--8706653 Score: 57
Period size: 7 Copynumber: 5.9 Consensus size: 7
8706602 ATTTTAAGGT
8706612 TTATGGA
1 TTATGGA
*
8706619 TTATGGGT
1 TTAT-GGA
*
8706627 TTAGGGA
1 TTATGGA
8706634 TTATGGA
1 TTATGGA
8706641 TTATGGA
1 TTATGGA
8706648 TTATGG
1 TTATGG
8706654 TTTAAAGGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
7 25 0.83
8 5 0.17
ACGTcount: A:0.24, C:0.00, G:0.33, T:0.43
Consensus pattern (7 bp):
TTATGGA
Found at i:8706629 original size:22 final size:22
Alignment explanation
Indices: 8706604--8706646 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
8706594 GAGTTACTAT
*
8706604 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGATTATGGATTATGGG
*
8706626 TTTAGGGATTATGGATTATGG
1 TTTAAGGATTATGGATTATGG
8706647 ATTATGGTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.33, T:0.44
Consensus pattern (22 bp):
TTTAAGGATTATGGATTATGGG
Found at i:8706702 original size:57 final size:57
Alignment explanation
Indices: 8706627--8706757 Score: 140
Period size: 57 Copynumber: 2.3 Consensus size: 57
8706617 GATTATGGGT
* * * * *
8706627 TTAGGGA-TTATGGATTATGGATTATGGTTTAAAGGTT-GGGGTTTAAGGGTTAAGGG
1 TTAGGGATTTAGGGTTTATGGATTAT-GTTTAAAGATTCAGGGTTTAAGGGATAAGGG
* * * * * *
8706683 TTAGGGGTTTAGGTTTTATGGTTTATGTTTTATGATTCAGGGTTTAAGGGATAGGGG
1 TTAGGGATTTAGGGTTTATGGATTATGTTTAAAGATTCAGGGTTTAAGGGATAAGGG
8706740 TTAGGGATTTAGGGTTTA
1 TTAGGGATTTAGGGTTTA
8706758 GATTAATTAA
Statistics
Matches: 60, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
56 14 0.23
57 46 0.77
ACGTcount: A:0.22, C:0.01, G:0.36, T:0.41
Consensus pattern (57 bp):
TTAGGGATTTAGGGTTTATGGATTATGTTTAAAGATTCAGGGTTTAAGGGATAAGGG
Found at i:8715586 original size:68 final size:67
Alignment explanation
Indices: 8715514--8715663 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
8715504 CATCATGTGT
* * * *
8715514 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
8715576 ATGTAG
62 ATGTAG
** * *
8715582 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
8715647 AG
66 AG
8715649 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
8715664 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:8715619 original size:64 final size:64
Alignment explanation
Indices: 8715538--8715721 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
8715528 AGACATTATG
* *
8715538 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
8715602 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
8715667 AA
63 AA
* * * *
8715669 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
8715722 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:8720316 original size:21 final size:21
Alignment explanation
Indices: 8720292--8720334 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
8720282 TAAAGATATT
8720292 AAATATTGAACCTAAATTTTC
1 AAATATTGAACCTAAATTTTC
8720313 AAATATTGAACCTAAATTTTC
1 AAATATTGAACCTAAATTTTC
8720334 A
1 A
8720335 TGTCACACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.44, C:0.14, G:0.05, T:0.37
Consensus pattern (21 bp):
AAATATTGAACCTAAATTTTC
Found at i:8720550 original size:24 final size:24
Alignment explanation
Indices: 8720518--8720568 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
8720508 TATTTTTTTA
8720518 TCATAAGAACGCGATGAAAAGTGT
1 TCATAAGAACGCGATGAAAAGTGT
8720542 TCATAAGAACGCGATGAAAAGTGT
1 TCATAAGAACGCGATGAAAAGTGT
8720566 TCA
1 TCA
8720569 ATAGTAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.22
Consensus pattern (24 bp):
TCATAAGAACGCGATGAAAAGTGT
Found at i:8723022 original size:33 final size:33
Alignment explanation
Indices: 8722980--8723061 Score: 146
Period size: 33 Copynumber: 2.5 Consensus size: 33
8722970 TCAACATAAG
8722980 TGATTGGAACATCTATCAGGGCAGCTTCATCAA
1 TGATTGGAACATCTATCAGGGCAGCTTCATCAA
* *
8723013 TGATTGGAACATCTATCGGGGCAGCTTCATCAT
1 TGATTGGAACATCTATCAGGGCAGCTTCATCAA
8723046 TGATTGGAACATCTAT
1 TGATTGGAACATCTAT
8723062 GGAGGCAATT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 47 1.00
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (33 bp):
TGATTGGAACATCTATCAGGGCAGCTTCATCAA
Found at i:8723075 original size:33 final size:33
Alignment explanation
Indices: 8722980--8723079 Score: 132
Period size: 33 Copynumber: 3.0 Consensus size: 33
8722970 TCAACATAAG
* *
8722980 TGATTGGAACATCTAT-CAGGGCAGCTTCATCAA
1 TGATTGGAACATCTATGGA-GGCAGCTTCATCAT
8723013 TGATTGGAACATCTATCGG-GGCAGCTTCATCAT
1 TGATTGGAACATCTAT-GGAGGCAGCTTCATCAT
**
8723046 TGATTGGAACATCTATGGAGGCAATTTCATCAT
1 TGATTGGAACATCTATGGAGGCAGCTTCATCAT
8723079 T
1 T
8723080 CTGTTCAACT
Statistics
Matches: 60, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
32 2 0.03
33 58 0.97
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (33 bp):
TGATTGGAACATCTATGGAGGCAGCTTCATCAT
Found at i:8733623 original size:42 final size:42
Alignment explanation
Indices: 8733576--8733660 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
8733566 TATTTCATTT
8733576 GGAGAAAGTTTTATTTTTATTCTTAAATGTAACTTCAATTAA
1 GGAGAAAGTTTTATTTTTATTCTTAAATGTAACTTCAATTAA
8733618 GGAGAAAGTTTTATTTTTATTCTTAAATGTAACTTCAATTAA
1 GGAGAAAGTTTTATTTTTATTCTTAAATGTAACTTCAATTAA
8733660 G
1 G
8733661 CTAGGTTTTG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.35, C:0.07, G:0.13, T:0.45
Consensus pattern (42 bp):
GGAGAAAGTTTTATTTTTATTCTTAAATGTAACTTCAATTAA
Found at i:8734727 original size:21 final size:21
Alignment explanation
Indices: 8734701--8734740 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
8734691 AAAGATTCCT
*
8734701 TAATGGACTTGGATTTCTTAA
1 TAATGGACTTAGATTTCTTAA
8734722 TAATGGACTTAGATTTCTT
1 TAATGGACTTAGATTTCTT
8734741 GAACAGAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.17, T:0.45
Consensus pattern (21 bp):
TAATGGACTTAGATTTCTTAA
Found at i:8736724 original size:42 final size:42
Alignment explanation
Indices: 8736670--8736870 Score: 188
Period size: 42 Copynumber: 4.8 Consensus size: 42
8736660 ACACATAGAA
* * **
8736670 TCATACCAATGCCATATCCCAGATATGGTCTTACATGGGATC
1 TCATAACAATGCCATATCCCAGATATGGTCTTACACGAAATC
* * * * * *
8736712 TCATATCGATGCCAATAGCCCGGCTATGGTCTTACACG-ATTC
1 TCATAACAATGCC-ATATCCCAGATATGGTCTTACACGAAATC
* * ** * * * * *
8736754 TCATATCGATGTTATGTACCAAACATGGTCCTACACGAAATC
1 TCATAACAATGCCATATCCCAGATATGGTCTTACACGAAATC
* *
8736796 TCATAACAATGCCATATCCCATATATGGTCTTACACGTAATC
1 TCATAACAATGCCATATCCCAGATATGGTCTTACACGAAATC
*
8736838 TCATAACAATGCCATATCTCAGATATGGTCTTA
1 TCATAACAATGCCATATCCCAGATATGGTCTTA
8736871 AACATAAACT
Statistics
Matches: 126, Mismatches: 31, Indels: 4
0.78 0.19 0.02
Matches are distributed among these distances:
41 16 0.13
42 90 0.71
43 20 0.16
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.30
Consensus pattern (42 bp):
TCATAACAATGCCATATCCCAGATATGGTCTTACACGAAATC
Found at i:8736883 original size:42 final size:42
Alignment explanation
Indices: 8736795--8736886 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
8736785 TACACGAAAT
* * * *
8736795 CTCATAACAATGCCATATCCCATATATGGTCTTACACGTAAT
1 CTCATAACAATGCCATATCCCAGATATGGTCTTAAACATAAA
*
8736837 CTCATAACAATGCCATATCTCAGATATGGTCTTAAACATAAA
1 CTCATAACAATGCCATATCCCAGATATGGTCTTAAACATAAA
8736879 CTCATAAC
1 CTCATAAC
8736887 CCTAATGTCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.37, C:0.25, G:0.09, T:0.29
Consensus pattern (42 bp):
CTCATAACAATGCCATATCCCAGATATGGTCTTAAACATAAA
Found at i:8749731 original size:40 final size:40
Alignment explanation
Indices: 8749631--8749802 Score: 204
Period size: 40 Copynumber: 4.3 Consensus size: 40
8749621 GCTCCTTGTT
* * * *
8749631 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCAGATTTAGTAACTCGCA
*
8749671 C-AATGCCTTCGGGACATAACCCAGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCAGATTTAGTAACTCGCA
* * *
8749710 CGAATGCCTTCGGGACTTAACCCAGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCAGATTTAGTAACTCGCA
* * * * *
8749750 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCAG-ATTTAGTAACTCGCA
8749790 CAAATGCCTTCGG
1 CAAATGCCTTCGG
8749803 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 34 0.29
40 79 0.68
41 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCAGATTTAGTAACTCGCA
Found at i:8758384 original size:44 final size:43
Alignment explanation
Indices: 8758335--8758440 Score: 106
Period size: 43 Copynumber: 2.4 Consensus size: 43
8758325 GAACTTGGAT
* *
8758335 CAACTCAACGAGTTCAGATG-CTCGCATCTATAATGAACCCAGAC
1 CAACTCAACGAGTTCAGATGCCTCG--TATATAACGAACCCAGAC
* ** * * *
8758379 TAACTCAATAAGTTCGGATGCCTCGTATATCACGAACCCGGAC
1 CAACTCAACGAGTTCAGATGCCTCGTATATAACGAACCCAGAC
*
8758422 CAACTCAACGAGTTTAGAT
1 CAACTCAACGAGTTCAGAT
8758441 TTCATTATAA
Statistics
Matches: 48, Mismatches: 13, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
43 28 0.58
44 16 0.33
45 4 0.08
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (43 bp):
CAACTCAACGAGTTCAGATGCCTCGTATATAACGAACCCAGAC
Found at i:8765413 original size:22 final size:22
Alignment explanation
Indices: 8765385--8765429 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
8765375 AGGAAGATTC
*
8765385 AGCCTAACTATGATGTGGTGAG
1 AGCCTAACTATGATATGGTGAG
8765407 AGCCTAACTATGATATGGTGAG
1 AGCCTAACTATGATATGGTGAG
8765429 A
1 A
8765430 TTGTGCATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.31, C:0.13, G:0.29, T:0.27
Consensus pattern (22 bp):
AGCCTAACTATGATATGGTGAG
Found at i:8766179 original size:35 final size:36
Alignment explanation
Indices: 8766140--8766280 Score: 169
Period size: 35 Copynumber: 4.0 Consensus size: 36
8766130 TATAATCGAT
* *
8766140 CATATGTGATGGTATATTGAA-TTTGAATATTCGGC
1 CATATGTGATGATATATTGAACTTTGTATATTCGGC
*
8766175 CATATGTGATGATATATTGAA-TTTGTATATTCGGT
1 CATATGTGATGATATATTGAACTTTGTATATTCGGC
* * * * * * *
8766210 TATATGTGAGGATAAATTAAATTTTGTATAATCAGC
1 CATATGTGATGATATATTGAACTTTGTATATTCGGC
*
8766246 CATATGTGATGATATATTGAACCTTGTATATTCGG
1 CATATGTGATGATATATTGAACTTTGTATATTCGG
8766281 TCTTATAGGT
Statistics
Matches: 87, Mismatches: 18, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
35 49 0.56
36 38 0.44
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (36 bp):
CATATGTGATGATATATTGAACTTTGTATATTCGGC
Found at i:8766258 original size:71 final size:70
Alignment explanation
Indices: 8766121--8766282 Score: 200
Period size: 71 Copynumber: 2.3 Consensus size: 70
8766111 TCGAGCTAGA
* * * * * *
8766121 TGAATCTTGTATAATCGATCATATGTGATGGTATATTGAATTTGAATATTCGGCCATATGTGATG
1 TGAAT-TTGTATATTCGGTCATATGTGATGGTAAATTAAATTTGAATAATCAGCCATATGTGATG
8766186 ATATAT
65 ATATAT
* *
8766192 TGAATTTGTATATTCGGTTATATGTGA-GGATAAATTAAATTTTGTATAATCAGCCATATGTGAT
1 TGAATTTGTATATTCGGTCATATGTGATGG-TAAATTAAA-TTTGAATAATCAGCCATATGTGAT
8766256 GATATAT
64 GATATAT
*
8766263 TGAACCTTGTATATTCGGTC
1 TGAA-TTTGTATATTCGGTC
8766283 TTATAGGTAT
Statistics
Matches: 78, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
69 2 0.03
70 26 0.33
71 37 0.47
72 13 0.17
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (70 bp):
TGAATTTGTATATTCGGTCATATGTGATGGTAAATTAAATTTGAATAATCAGCCATATGTGATGA
TATAT
Found at i:8780045 original size:15 final size:15
Alignment explanation
Indices: 8780025--8780088 Score: 83
Period size: 15 Copynumber: 4.3 Consensus size: 15
8780015 GACATAAAAA
* *
8780025 CCAAGATAGAGAAGT
1 CCAAGATAAAGAAAT
*
8780040 CCAAGACAAAGAAAT
1 CCAAGATAAAGAAAT
*
8780055 CCATGATAAAGAAAT
1 CCAAGATAAAGAAAT
*
8780070 CCAAGATACAGAAAT
1 CCAAGATAAAGAAAT
8780085 CCAA
1 CCAA
8780089 AATATAATAT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 42 1.00
ACGTcount: A:0.53, C:0.19, G:0.16, T:0.12
Consensus pattern (15 bp):
CCAAGATAAAGAAAT
Found at i:8783769 original size:52 final size:52
Alignment explanation
Indices: 8783697--8783800 Score: 138
Period size: 52 Copynumber: 2.0 Consensus size: 52
8783687 AGAACTCAAT
* *
8783697 CACATGTATCCCATCCATTATGAACTCGGACCAACTCAACGAGCTT-GGATGC
1 CACATGTATCCCATCCATTATGAACTCAGACCAACCCAACGAG-TTCGGATGC
* * * *
8783749 CACATGTATCGCATCTATTATGAACTTAGACCATCCCAACGAGTTCGGATGC
1 CACATGTATCCCATCCATTATGAACTCAGACCAACCCAACGAGTTCGGATGC
8783801 TCGCATCCAT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
51 2 0.04
52 43 0.96
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (52 bp):
CACATGTATCCCATCCATTATGAACTCAGACCAACCCAACGAGTTCGGATGC
Found at i:8783880 original size:43 final size:44
Alignment explanation
Indices: 8783776--8783881 Score: 106
Period size: 43 Copynumber: 2.4 Consensus size: 44
8783766 TTATGAACTT
* * * *
8783776 AGACCATCCCAACGAGTTCGGATGCTCGCATCCATAATGAACCC
1 AGACCAACTCAACGAGTTCGGATGCTCGCATACATAACGAACCC
** * * * *
8783820 AGACCAACTCAGTGAGTTTGGATGC-CTCATACATCACGAACTC
1 AGACCAACTCAACGAGTTCGGATGCTCGCATACATAACGAACCC
*
8783863 GGACCAACTCAACGAGTTC
1 AGACCAACTCAACGAGTTC
8783882 AGATTTCATA
Statistics
Matches: 48, Mismatches: 14, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
43 28 0.58
44 20 0.42
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.20
Consensus pattern (44 bp):
AGACCAACTCAACGAGTTCGGATGCTCGCATACATAACGAACCC
Found at i:8788474 original size:29 final size:29
Alignment explanation
Indices: 8788393--8788499 Score: 94
Period size: 29 Copynumber: 3.7 Consensus size: 29
8788383 TACATACATG
* *
8788393 CATATAGCCCACTAGGCCCAATCTTA--TT
1 CATATGGCCCACTAGGCCCAAT-TCACCTT
* * **
8788421 CAAATGGCCCATCTA-GCCCAGTTCATGTT
1 CATATGGCCCA-CTAGGCCCAATTCACCTT
* *
8788450 CTTATGGCCCACTAGGCCTAATTCACCTT
1 CATATGGCCCACTAGGCCCAATTCACCTT
*
8788479 CATATGGCCCATTAGGCCCAA
1 CATATGGCCCACTAGGCCCAA
8788500 ATCATATTAT
Statistics
Matches: 62, Mismatches: 13, Indels: 7
0.76 0.16 0.09
Matches are distributed among these distances:
27 2 0.03
28 18 0.29
29 42 0.68
ACGTcount: A:0.25, C:0.33, G:0.15, T:0.27
Consensus pattern (29 bp):
CATATGGCCCACTAGGCCCAATTCACCTT
Found at i:8788739 original size:16 final size:15
Alignment explanation
Indices: 8788718--8788747 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
8788708 CCAACTTTCA
8788718 GCTTTTCAGCATTTTG
1 GCTTTTCAGC-TTTTG
8788734 GCTTTTCAGCTTTT
1 GCTTTTCAGCTTTT
8788748 CGGCATTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.10, C:0.20, G:0.17, T:0.53
Consensus pattern (15 bp):
GCTTTTCAGCTTTTG
Found at i:8788743 original size:24 final size:24
Alignment explanation
Indices: 8788713--8788759 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
8788703 GTATCCCAAC
8788713 TTTCAGCTTTTCAGCATTTTGGCT
1 TTTCAGCTTTTCAGCATTTTGGCT
*
8788737 TTTCAGCTTTTCGGCATTTTGGC
1 TTTCAGCTTTTCAGCATTTTGGC
8788760 GTTTGCCGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.11, C:0.21, G:0.19, T:0.49
Consensus pattern (24 bp):
TTTCAGCTTTTCAGCATTTTGGCT
Found at i:8793936 original size:79 final size:81
Alignment explanation
Indices: 8793827--8794009 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
8793817 TACTCGTTCA
* * *
8793827 AATGCCTTCGGGACATAGCCTGG-TTATAGTAACTCACACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTC-GGATCTTAACCCGG
* *
8793890 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
* **
8793907 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCGGA
* *
8793970 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
8793986 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
8794010 CATCATTCGA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 57 0.65
80 28 0.32
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:8794009 original size:40 final size:40
Alignment explanation
Indices: 8793825--8794009 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
8793815 GCTACTCGTT
* * *
8793825 CAAATGCCTTCGGGACATAGCCTGGTTATAGTAACTCA-CA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACT-AGCA
* * *
8793865 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* *
8793905 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCA
* * *
8793944 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCA
8793985 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
8794010 CATCATTCGA
Statistics
Matches: 123, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 77 0.63
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Done.