Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 28 of 276
Found at i:8803495 original size:19 final size:20
Alignment explanation
Indices: 8803473--8803516 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
8803463 TTTTTGTTAG
8803473 ATTTTAGAATTTTA-TTTTT
1 ATTTTAGAATTTTATTTTTT
***
8803492 ATTTTTTTATTTTATTTTTT
1 ATTTTAGAATTTTATTTTTT
8803512 ATTTT
1 ATTTT
8803517 GGTTATTTCT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 11 0.52
20 10 0.48
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.77
Consensus pattern (20 bp):
ATTTTAGAATTTTATTTTTT
Found at i:8803498 original size:13 final size:13
Alignment explanation
Indices: 8803482--8803516 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
8803472 GATTTTAGAA
8803482 TTTTATTTTTATT
1 TTTTATTTTTATT
8803495 TTTT-TATTTTATT
1 TTTTAT-TTTTATT
8803508 TTTTATTTT
1 TTTTATTTT
8803517 GGTTATTTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
12 1 0.05
13 18 0.90
14 1 0.05
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (13 bp):
TTTTATTTTTATT
Found at i:8803529 original size:20 final size:20
Alignment explanation
Indices: 8803481--8803524 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
8803471 AGATTTTAGA
*
8803481 ATTTTA-TTTTTATTTTTTT
1 ATTTTATTTTTTATTTTGTT
8803500 ATTTTATTTTTTATTTTGGTT
1 ATTTTATTTTTTATTTT-GTT
8803521 ATTT
1 ATTT
8803525 CTTTTCGAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 6 0.27
20 10 0.45
21 6 0.27
ACGTcount: A:0.16, C:0.00, G:0.05, T:0.80
Consensus pattern (20 bp):
ATTTTATTTTTTATTTTGTT
Found at i:8814018 original size:53 final size:52
Alignment explanation
Indices: 8813925--8814054 Score: 145
Period size: 53 Copynumber: 2.5 Consensus size: 52
8813915 AGAATACTTT
* * * * *
8813925 AGTTTACTAAAATTACTGAAATACCCCCGTTGTAAAATTACCAAAGTACCCCC
1 AGTTTA-TAAAATTACCGAAATACCACCGTCGTAAAATTACCAAAATAACCCC
* * *
8813978 AGTTTATAAAATTACCGAAATACCATCGATCGTAAAATTACTAAAATAACCTC
1 AGTTTATAAAATTACCGAAATACCACCG-TCGTAAAATTACCAAAATAACCCC
*
8814031 -GATTTGTAAAATTACCGAAATACC
1 AG-TTTATAAAATTACCGAAATACC
8814055 CTTGTAGGGT
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
52 20 0.30
53 46 0.70
ACGTcount: A:0.42, C:0.22, G:0.09, T:0.28
Consensus pattern (52 bp):
AGTTTATAAAATTACCGAAATACCACCGTCGTAAAATTACCAAAATAACCCC
Found at i:8814024 original size:26 final size:26
Alignment explanation
Indices: 8813932--8814054 Score: 92
Period size: 27 Copynumber: 4.7 Consensus size: 26
8813922 TTTAGTTTAC
* *
8813932 TAAAATTACTGAAATACCCCCG-TT-G
1 TAAAATTACCGAAATA-CCTCGATTCG
* * **
8813957 TAAAATTACC-AAAGTACCCCCAGTTTA
1 TAAAATTACCGAAA-TACCTCGA-TTCG
8813984 TAAAATTACCGAAATACCATCGA-TCG
1 TAAAATTACCGAAATACC-TCGATTCG
** *
8814010 TAAAATTACTAAAATAACCTCGATTTG
1 TAAAATTACCGAAAT-ACCTCGATTCG
8814037 TAAAATTACCGAAATACC
1 TAAAATTACCGAAATACC
8814055 CTTGTAGGGT
Statistics
Matches: 78, Mismatches: 12, Indels: 15
0.74 0.11 0.14
Matches are distributed among these distances:
24 7 0.09
25 11 0.14
26 23 0.29
27 32 0.41
28 5 0.06
ACGTcount: A:0.42, C:0.22, G:0.09, T:0.27
Consensus pattern (26 bp):
TAAAATTACCGAAATACCTCGATTCG
Found at i:8814124 original size:27 final size:27
Alignment explanation
Indices: 8814036--8814127 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
8814026 ACCTCGATTT
8814036 GTAAAATTACCGAAATACCCTTGTAGG
1 GTAAAATTACCGAAATACCCTTGTAGG
* * *
8814063 GTAGAAA-TACTGAAATACCCCTATAGG
1 GTA-AAATTACCGAAATACCCTTGTAGG
* * *
8814090 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAAAATTACCGAAATACCCTTGTAGG
8814117 GTAAAATTACC
1 GTAAAATTACC
8814128 ATTTTGCCCC
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
26 2 0.04
27 48 0.91
28 3 0.06
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (27 bp):
GTAAAATTACCGAAATACCCTTGTAGG
Found at i:8814596 original size:27 final size:27
Alignment explanation
Indices: 8814566--8814632 Score: 116
Period size: 27 Copynumber: 2.5 Consensus size: 27
8814556 ACCTGATTAT
* *
8814566 GGCTGTGTGCCAAGCGTATTTGCCTAA
1 GGCTATGTGCCAAACGTATTTGCCTAA
8814593 GGCTATGTGCCAAACGTATTTGCCTAA
1 GGCTATGTGCCAAACGTATTTGCCTAA
8814620 GGCTATGTGCCAA
1 GGCTATGTGCCAA
8814633 TATATGATTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.28
Consensus pattern (27 bp):
GGCTATGTGCCAAACGTATTTGCCTAA
Found at i:8814797 original size:27 final size:26
Alignment explanation
Indices: 8814765--8814872 Score: 94
Period size: 27 Copynumber: 4.0 Consensus size: 26
8814755 TTCTGTTAAA
* *
8814765 GTGGCTTTGCCACATTATCAGTTTCTG
1 GTGGCTATGCCACAATATC-GTTTCTG
8814792 GTGGCTATGCCACAAATATC-TATTCTG
1 GTGGCTATGCCAC-AATATCGT-TTCTG
* *
8814819 GAGGCTCTGCCACAATATCTGTTTCTG
1 GTGGCTATGCCACAATATC-GTTTCTG
* * *
8814846 GTGACTCTGTCACAATATC-TGTTCTG
1 GTGGCTATGCCACAATATCGT-TTCTG
8814872 G
1 G
8814873 CAGCCATGCT
Statistics
Matches: 69, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
25 1 0.01
26 13 0.19
27 49 0.71
28 6 0.09
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.36
Consensus pattern (26 bp):
GTGGCTATGCCACAATATCGTTTCTG
Found at i:8814887 original size:53 final size:54
Alignment explanation
Indices: 8814767--8814872 Score: 142
Period size: 54 Copynumber: 2.0 Consensus size: 54
8814757 CTGTTAAAGT
* * *
8814767 GGCTTTGCCACATTATCAGTTTCTGGTGGCTATGCCACAAATATCTATTCTGGA
1 GGCTCTGCCACAATATCAGTTTCTGGTGACTATGCCACAAATATCTATTCTGGA
* * * *
8814821 GGCTCTGCCACAATATCTGTTTCTGGTGACTCTGTCAC-AATATCTGTTCTGG
1 GGCTCTGCCACAATATCAGTTTCTGGTGACTATGCCACAAATATCTATTCTGG
8814873 CAGCCATGCT
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
53 13 0.29
54 32 0.71
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (54 bp):
GGCTCTGCCACAATATCAGTTTCTGGTGACTATGCCACAAATATCTATTCTGGA
Found at i:8814999 original size:6 final size:6
Alignment explanation
Indices: 8814990--8815102 Score: 54
Period size: 6 Copynumber: 18.3 Consensus size: 6
8814980 TTGCATTCAC
* * * *
8814990 ATTCTG ATTCTG ATTCTG -TTACTTG ATACTG ATTCTG ATTTTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG AT--TCTG
* * * * *
8815040 ATTCTG ATTCTG ATTCTG CCA-CCTG ATTCTA ATTTTG ATTCTC ATTTTG
1 ATTCTG ATTCTG ATTCTG --ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
8815089 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
8815103 AATGTTTATT
Statistics
Matches: 78, Mismatches: 18, Indels: 22
0.66 0.15 0.19
Matches are distributed among these distances:
5 5 0.06
6 62 0.79
7 8 0.10
8 3 0.04
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:8815021 original size:25 final size:25
Alignment explanation
Indices: 8814993--8815081 Score: 88
Period size: 25 Copynumber: 3.6 Consensus size: 25
8814983 CATTCACATT
* * *
8814993 CTGATTCTGATTCTGTTACTTGATA
1 CTGATTCTGATTCTGTCACCTAATA
* *
8815018 CTGATTCTGATTTTGTCACCTAATT
1 CTGATTCTGATTCTGTCACCTAATA
* * *
8815043 CTGATTCTGATTCTGCCACCTGATT
1 CTGATTCTGATTCTGTCACCTAATA
* *
8815068 CTAATTTTGATTCT
1 CTGATTCTGATTCT
8815082 CATTTTGATT
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 54 1.00
ACGTcount: A:0.19, C:0.20, G:0.13, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTAATA
Found at i:8817180 original size:26 final size:27
Alignment explanation
Indices: 8817102--8817202 Score: 100
Period size: 27 Copynumber: 3.8 Consensus size: 27
8817092 ATACCCATAG
**
8817102 TTGTAAAATTACC-AAAGTACCACCGAT
1 TTGTAAAATTACCGAAA-TACCGTCGAT
* *
8817129 TTATAAAATTACCGAGATACCGTCGA-
1 TTGTAAAATTACCGAAATACCGTCGAT
*
8817155 TTGTAAAATTACTGAAATAGCC-TCGAT
1 TTGTAAAATTACCGAAATA-CCGTCGAT
* *
8817182 TTGTAAAATTAGCAAAATACC
1 TTGTAAAATTACCGAAATACC
8817203 CTTGTAGGGT
Statistics
Matches: 61, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
26 22 0.36
27 37 0.61
28 2 0.03
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.29
Consensus pattern (27 bp):
TTGTAAAATTACCGAAATACCGTCGAT
Found at i:8817218 original size:27 final size:27
Alignment explanation
Indices: 8817196--8817300 Score: 147
Period size: 27 Copynumber: 3.9 Consensus size: 27
8817186 AAAATTAGCA
8817196 AAATACCCTTGTAGGGTAGAATTATCG
1 AAATACCCTTGTAGGGTAGAATTATCG
*
8817223 AAATACCCTTGTAGGGTAGAAATATCG
1 AAATACCCTTGTAGGGTAGAATTATCG
* * * *
8817250 AGATACCCCTATGGGGTAGAATTATCG
1 AAATACCCTTGTAGGGTAGAATTATCG
* *
8817277 AGATACCCTTGTAGGGTAAAATTA
1 AAATACCCTTGTAGGGTAGAATTA
8817301 CCATTTTGCC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAATTATCG
Found at i:8818749 original size:37 final size:37
Alignment explanation
Indices: 8818699--8818777 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
8818689 TTATTACGAA
* * *
8818699 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
* *
8818736 GTCTTACCTGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
8818773 GTCTT
1 GTCTT
8818778 TAGAACTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:8818974 original size:47 final size:47
Alignment explanation
Indices: 8818911--8819898 Score: 1670
Period size: 47 Copynumber: 20.9 Consensus size: 47
8818901 CACATTTATG
* * * ** * * **
8818911 CACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
8818958 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
* **
8819005 CACTTTCACATTCATCACATCGGCCGTTAAGCCTTATCACATATATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCAC--GCATATA
8819054 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
* **
8819101 CACTTTCACATTCATCACATCGGCCGTTAAGCCTTATCACATATATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCAC--GCATATA
8819150 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
8819197 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
8819244 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
8819291 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
8819338 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
8819385 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
8819432 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
8819479 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
8819526 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
8819573 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
8819620 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
8819667 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
**
8819714 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATAT--A
* **
8819763 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATTCACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTA-TCACGCATATA
* * * **
8819811 CAGTTTCACATTCATCACATCGGCCATTAGGCCCTATTCACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTA-TCACGCATATA
*
8819859 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCAC
8819899 AATTTAGAAT
Statistics
Matches: 906, Mismatches: 28, Indels: 14
0.96 0.03 0.01
Matches are distributed among these distances:
47 691 0.76
48 81 0.09
49 124 0.14
50 10 0.01
ACGTcount: A:0.30, C:0.32, G:0.09, T:0.30
Consensus pattern (47 bp):
CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATA
Found at i:8822563 original size:22 final size:22
Alignment explanation
Indices: 8822511--8822575 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
8822501 GCCAATTATT
*
8822511 CTGATTATGGCTTTGTGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
8822533 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
8822555 CTGATTATGGTTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
8822576 ACGTATTTTC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:8822822 original size:27 final size:26
Alignment explanation
Indices: 8822734--8822841 Score: 108
Period size: 27 Copynumber: 4.0 Consensus size: 26
8822724 ATTCTATTAA
* * *
8822734 GTGGCTTTGCCACATTATCAGTTTCTG
1 GTGGCTCTGCCACAATATCTG-TTCTG
* *
8822761 GTGGCTATGCCACAAATATCTATTCTG
1 GTGGCTCTGCCAC-AATATCTGTTCTG
*
8822788 GAGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
* * *
8822815 GTGACTCTGTCATAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTGTTCTG
8822841 G
1 G
8822842 CAGCCATGCT
Statistics
Matches: 68, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
26 13 0.19
27 50 0.74
28 5 0.07
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.36
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:8823019 original size:31 final size:25
Alignment explanation
Indices: 8822959--8823050 Score: 139
Period size: 25 Copynumber: 3.7 Consensus size: 25
8822949 TTGCATTCAC
8822959 ATTCTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTA
8822984 ATTCTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTA
* * *
8823009 ATTATGATTCTGATTCTGCCACCTG
1 ATTCTGATTCTGATTCTGTCACCTA
* *
8823034 ATTCTTATTCCGATTCT
1 ATTCTGATTCTGATTCT
8823051 CATTTTGATT
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 61 1.00
ACGTcount: A:0.20, C:0.24, G:0.12, T:0.45
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTA
Found at i:8825106 original size:53 final size:53
Alignment explanation
Indices: 8825007--8825129 Score: 135
Period size: 53 Copynumber: 2.3 Consensus size: 53
8824997 TTTAGTTTTC
* * *
8825007 TAAAA-TACTGAAATACC-CCCAGTTGTAAAATGACCAAAGTACCCTCGATTTA
1 TAAAATTACTGAAATACCGTCGA-TTGTAAAATGACCAAAATACCCTCGATTTA
* * * * *
8825059 TAACATTA-TCGAAATACCGTCGATTGTAAAATTACTAAAATAGCCTCGATTTG
1 TAAAATTACT-GAAATACCGTCGATTGTAAAATGACCAAAATACCCTCGATTTA
8825112 TAAAATTACTGAAATACC
1 TAAAATTACTGAAATACC
8825130 CTTGTAGGGT
Statistics
Matches: 58, Mismatches: 9, Indels: 7
0.78 0.12 0.09
Matches are distributed among these distances:
52 5 0.09
53 50 0.86
54 3 0.05
ACGTcount: A:0.41, C:0.20, G:0.11, T:0.28
Consensus pattern (53 bp):
TAAAATTACTGAAATACCGTCGATTGTAAAATGACCAAAATACCCTCGATTTA
Found at i:8825119 original size:27 final size:26
Alignment explanation
Indices: 8825007--8825129 Score: 90
Period size: 27 Copynumber: 4.7 Consensus size: 26
8824997 TTTAGTTTTC
* * * *
8825007 TAAAA-TACTGAAATACCCCCAGTTG
1 TAAAATTACTAAAATACCTCGATTTG
* * * *
8825032 TAAAATGACCAAAGTACCCTCGATTTA
1 TAAAATTACTAAAATA-CCTCGATTTG
* *
8825059 TAACATTA-TCGAAATACCGTCGA-TTG
1 TAAAATTACT-AAAATACC-TCGATTTG
8825085 TAAAATTACTAAAATAGCCTCGATTTG
1 TAAAATTACTAAAATA-CCTCGATTTG
*
8825112 TAAAATTACTGAAATACC
1 TAAAATTACTAAAATACC
8825130 CTTGTAGGGT
Statistics
Matches: 74, Mismatches: 17, Indels: 13
0.71 0.16 0.12
Matches are distributed among these distances:
25 5 0.07
26 28 0.38
27 41 0.55
ACGTcount: A:0.41, C:0.20, G:0.11, T:0.28
Consensus pattern (26 bp):
TAAAATTACTAAAATACCTCGATTTG
Found at i:8825145 original size:27 final size:27
Alignment explanation
Indices: 8825115--8825228 Score: 133
Period size: 27 Copynumber: 4.2 Consensus size: 27
8825105 CGATTTGTAA
8825115 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
*
8825142 AATTA-TCGAAATACTCTTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAG
* *
8825169 AAATATCT-AAATACCCCTGTAGGGTAG
1 AATTA-CTGAAATACCCTTGTAGGGTAG
* * * *
8825196 AATTATTGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCTTGTAGGGTAG
8825223 AATTAC
1 AATTAC
8825229 CATTTTGCCC
Statistics
Matches: 72, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
26 2 0.03
27 69 0.96
29 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGTAGGGTAG
Found at i:8825181 original size:54 final size:53
Alignment explanation
Indices: 8825123--8825225 Score: 152
Period size: 54 Copynumber: 1.9 Consensus size: 53
8825113 AAAATTACTG
* *
8825123 AAATACCCTTGTAGGGTAGAATTATCGAAATACTCTTGTAGGGTAGAAATATCT
1 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTA-AAATATCT
* * *
8825177 AAATACCCCTGTAGGGTAGAATTATTGAGATACCCTTGTGGGGTAAAAT
1 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAAAAT
8825226 TACCATTTTG
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
53 4 0.09
54 40 0.91
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (53 bp):
AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAAAATATCT
Found at i:8825658 original size:22 final size:22
Alignment explanation
Indices: 8825633--8825681 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
8825623 ATGGTTTTGC
* *
8825633 GCCAACCTACA-TATGGCTCTGT
1 GCCAACCTA-ATTATGGATATGT
8825655 GCCAACCTAATTATGGATATGT
1 GCCAACCTAATTATGGATATGT
8825677 GCCAA
1 GCCAA
8825682 ACATATTTGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 1 0.04
22 23 0.96
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (22 bp):
GCCAACCTAATTATGGATATGT
Found at i:8825883 original size:27 final size:26
Alignment explanation
Indices: 8825853--8825939 Score: 75
Period size: 27 Copynumber: 3.3 Consensus size: 26
8825843 CATTATCTGT
8825853 TTCTGGTGGCTATGCCACAAATATTTG
1 TTCTGGTGGCTATGCCAC-AATATTTG
* * * *
8825880 TTCTGGAGGCTCTACCACAATATCTG
1 TTCTGGTGGCTATGCCACAATATTTG
* * * * *
8825906 TATCTAGTGACTCTGTCACAATATTTT
1 T-TCTGGTGGCTATGCCACAATATTTG
8825933 TTCTGGT
1 TTCTGGT
8825940 AGCCATGCTA
Statistics
Matches: 47, Mismatches: 12, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
26 13 0.28
27 34 0.72
ACGTcount: A:0.22, C:0.21, G:0.18, T:0.39
Consensus pattern (26 bp):
TTCTGGTGGCTATGCCACAATATTTG
Found at i:8826065 original size:6 final size:6
Alignment explanation
Indices: 8826056--8826158 Score: 68
Period size: 6 Copynumber: 16.7 Consensus size: 6
8826046 TTGCATTCAC
* * * *
8826056 ATTCTG ATTCCG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * *
8826106 ATTCTG ATTCTG ATTCTG CCA-CCTG ATTCTG ATTTTG ATTCTG ATTTTG
1 ATTCTG ATTCTG ATTCTG --ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
8826155 ATTC
1 ATTC
8826159 AAGTTCTGAT
Statistics
Matches: 74, Mismatches: 14, Indels: 18
0.70 0.13 0.17
Matches are distributed among these distances:
5 4 0.05
6 59 0.80
7 8 0.11
8 3 0.04
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.46
Consensus pattern (6 bp):
ATTCTG
Found at i:8826087 original size:25 final size:25
Alignment explanation
Indices: 8826056--8826148 Score: 132
Period size: 25 Copynumber: 3.7 Consensus size: 25
8826046 TTGCATTCAC
* *
8826056 ATTCTGATTCCGATTCTGTTACCTG
1 ATTCTGATTCTGATTCTGTCACCTG
* *
8826081 ATACTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTG
*
8826106 ATTCTGATTCTGATTCTGCCACCTG
1 ATTCTGATTCTGATTCTGTCACCTG
*
8826131 ATTCTGATTTTGATTCTG
1 ATTCTGATTCTGATTCTG
8826149 ATTTTGATTC
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 60 1.00
ACGTcount: A:0.18, C:0.23, G:0.15, T:0.44
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTG
Found at i:8830829 original size:17 final size:18
Alignment explanation
Indices: 8830789--8830830 Score: 52
Period size: 17 Copynumber: 2.3 Consensus size: 18
8830779 TAGGCCTCGA
8830789 TGGGCCAAAATGGGCTATG
1 TGGGCCAAAATGGGC-ATG
8830808 TGGGCC-AAATGGG-ATCG
1 TGGGCCAAAATGGGCAT-G
8830825 TGGGCC
1 TGGGCC
8830831 CTACATGGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 2 0.09
17 7 0.32
18 7 0.32
19 6 0.27
ACGTcount: A:0.21, C:0.19, G:0.40, T:0.19
Consensus pattern (18 bp):
TGGGCCAAAATGGGCATG
Found at i:8831109 original size:27 final size:27
Alignment explanation
Indices: 8831079--8831130 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
8831069 GAGCAAAATA
8831079 CCCCTAAAGGGTAAATTGACT-ATTTTG
1 CCCCTAAAGGGTAAA-TGACTGATTTTG
**
8831106 CCCCTCGAGGGTAAATGACTGATTT
1 CCCCTAAAGGGTAAATGACTGATTT
8831131 GTTTGATATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 5 0.23
27 17 0.77
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (27 bp):
CCCCTAAAGGGTAAATGACTGATTTTG
Found at i:8831479 original size:32 final size:32
Alignment explanation
Indices: 8831425--8831496 Score: 92
Period size: 32 Copynumber: 2.2 Consensus size: 32
8831415 GAAACGGTCC
* *
8831425 AGGCCCAACATATAGTGGTTCTGATATGGGCT
1 AGGCCCAACATATAGTGATTCTGAGATGGGCT
*
8831457 AGGCCCAAC-TGATATTGATTCTGAGATGGGCT
1 AGGCCCAACAT-ATAGTGATTCTGAGATGGGCT
*
8831489 TGGCCCAA
1 AGGCCCAA
8831497 TTAATATTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 1 0.03
32 34 0.97
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (32 bp):
AGGCCCAACATATAGTGATTCTGAGATGGGCT
Found at i:8837470 original size:38 final size:38
Alignment explanation
Indices: 8837419--8837496 Score: 138
Period size: 38 Copynumber: 2.1 Consensus size: 38
8837409 AGGCCGTGTA
8837419 ACTACCTTACTTGAATGTCTTTAAAACCTACAAGGGAC
1 ACTACCTTACTTGAATGTCTTTAAAACCTACAAGGGAC
* *
8837457 ACTACCTTACTTGAATGTCTTTAAAACCTATAGGGGAC
1 ACTACCTTACTTGAATGTCTTTAAAACCTACAAGGGAC
8837495 AC
1 AC
8837497 ATGACTGAGA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.29
Consensus pattern (38 bp):
ACTACCTTACTTGAATGTCTTTAAAACCTACAAGGGAC
Found at i:8840606 original size:27 final size:27
Alignment explanation
Indices: 8840393--8840615 Score: 257
Period size: 27 Copynumber: 8.3 Consensus size: 27
8840383 TAAGTTATAA
* *
8840393 AATTAACGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
8840420 AATTACTGAAATACCCCTGTAAGGTAT
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
8840447 AATTACCGAAATACCCCTGTAAGGTAT
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
8840474 AATTACCGAAATACCTCTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
8840501 AATTACTGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
8840528 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
8840555 AAATACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
8840582 AATTACCGAGATACTCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
8840609 AATTACC
1 AATTACC
8840616 ATTTTGCCCC
Statistics
Matches: 169, Mismatches: 27, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 169 1.00
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:8841310 original size:27 final size:27
Alignment explanation
Indices: 8841267--8841346 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 27
8841257 CCTCACTACA
*
8841267 ATCTGGTGGCCTCGCCACATATATCTGT
1 ATCTGGTGGCCTAGCCACA-ATATCTGT
8841295 -TCTGGTGGCCTAGCCACAATATCTGT
1 ATCTGGTGGCCTAGCCACAATATCTGT
* * * *
8841321 ATCTGGTGACTTCGTCACAATATCTG
1 ATCTGGTGGCCTAGCCACAATATCTG
8841347 GCAGCCTCGC
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
26 8 0.17
27 38 0.83
ACGTcount: A:0.20, C:0.26, G:0.21, T:0.33
Consensus pattern (27 bp):
ATCTGGTGGCCTAGCCACAATATCTGT
Found at i:8846737 original size:27 final size:27
Alignment explanation
Indices: 8846687--8846774 Score: 151
Period size: 27 Copynumber: 3.3 Consensus size: 27
8846677 TGGATAAGTT
8846687 GTAGAATTACCG-AATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
8846713 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
8846740 GTAGAATTACTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
8846767 ATAGAATT
1 GTAGAATT
8846775 TGTGACAGCC
Statistics
Matches: 59, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
26 12 0.20
27 47 0.80
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:8847351 original size:13 final size:13
Alignment explanation
Indices: 8847333--8847357 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8847323 CCGAAACTAG
8847333 AAAGAAAAAAAAC
1 AAAGAAAAAAAAC
8847346 AAAGAAAAAAAA
1 AAAGAAAAAAAA
8847358 ATGCTCATCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.04, G:0.08, T:0.00
Consensus pattern (13 bp):
AAAGAAAAAAAAC
Found at i:8848522 original size:40 final size:40
Alignment explanation
Indices: 8848438--8848662 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
8848428 TTGAATGATG
* * * *
8848438 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
8848478 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
8848518 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
8848557 TCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
8848597 TCCGGGTTAAGTCCCGAAGGCACTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
8848638 T-CGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
8848663 AACGATGAGC
Statistics
Matches: 162, Mismatches: 18, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
39 34 0.21
40 117 0.72
41 11 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:8848680 original size:80 final size:80
Alignment explanation
Indices: 8848438--8848695 Score: 217
Period size: 79 Copynumber: 3.2 Consensus size: 80
8848428 TTGAATGATG
* * * * * * * *
8848438 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCACTTGTGCGAA-TTACTAAATCCGGGCTAA-TTCCCGAAGGCAT
** *
8848501 TTGTGCGAGAT-ACTAAT
64 TTGAACGAG-TGACTAAA
* * * *
8848518 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAATTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCACTTGTGCGAATTACTAAATCCGGGCTAATTCCCGAAGGCATTT
** *
8848582 GTGCGAGTTACTAAA
66 GAACGAGTGACTAAA
8848597 TCCGGGTTAAGTCCCGAAGGCACTTGTGCGAATTACTATAAT-CGGGCT-ATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCACTTGTGCGAATTACTA-AATCCGGGCTAAT-TCCCGAAGGCAT
*
8848660 TTGAACGA-TGAGCTATA
64 TTGAACGAGTGA-CTAAA
* *
8848677 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
8848696 TACGTGATTT
Statistics
Matches: 152, Mismatches: 19, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
78 2 0.01
79 74 0.49
80 73 0.48
81 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCACTTGTGCGAATTACTAAATCCGGGCTAATTCCCGAAGGCATTT
GAACGAGTGACTAAA
Found at i:8850236 original size:40 final size:40
Alignment explanation
Indices: 8850169--8850375 Score: 235
Period size: 40 Copynumber: 5.2 Consensus size: 40
8850159 CCTTCGGAGT
** * *
8850169 TTAG-CCGGATATAGCCACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGAC
*
8850208 TTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGAC
* *
8850248 TTAGCCCGG-TATAATAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGAC
*
8850287 TTAGCCCGGATATAGT-AGTTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTT-GCACAAATGCCTTCGGGAC
* ** * *
8850327 TTAGCCC-GAAATTAGCCACTAGCTCAAATG-CTCTCGGGAC
1 TTAGCCCGGATA-TAGTAACTTGCACAAATGCCT-TCGGGAC
8850367 TTAGCCCGG
1 TTAGCCCGG
8850376 TTATCATCCG
Statistics
Matches: 146, Mismatches: 15, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
39 48 0.33
40 95 0.65
41 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGAC
Found at i:8850290 original size:79 final size:80
Alignment explanation
Indices: 8850185--8850379 Score: 261
Period size: 79 Copynumber: 2.5 Consensus size: 80
8850175 GGATATAGCC
*
8850185 ACTAGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTT-GCACAAATGCCTTCGGGACT
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGT-ACTTCGCACAAATGCCTTCGGGACT
** *
8850249 TAGCCCGGTA-TAATA
65 TAGCCCGAAATTAACA
* * *
8850264 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATGCCTTCGGGACTT
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTACTTCGCACAAATGCCTTCGGGACTT
* *
8850329 AGCCCGAAATTAGCC
66 AGCCCGAAATTAACA
*
8850344 ACTAGCTCAAATG-CTCTCGGGACTTAGCCCGGTTAT
1 ACTAGCACAAATGCCT-TCGGGACTTAGCCCGGTTAT
8850380 CATCCGAACA
Statistics
Matches: 101, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
78 3 0.03
79 66 0.65
80 32 0.32
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTACTTCGCACAAATGCCTTCGGGACTT
AGCCCGAAATTAACA
Found at i:8857902 original size:27 final size:27
Alignment explanation
Indices: 8857871--8858048 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
8857861 TAAATTGTAC
8857871 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
8857898 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
8857924 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
8857952 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
8857980 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
8858007 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
8858034 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
8858049 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:8857985 original size:82 final size:81
Alignment explanation
Indices: 8857872--8858027 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
8857862 AAATTGTACA
* *
8857872 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
8857936 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
8857953 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
8858018 TGCGAGTTGA
65 TGCGAATTGA
8858028 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:8858039 original size:82 final size:81
Alignment explanation
Indices: 8857868--8858048 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
8857858 GATTAAATTG
* *
8857868 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
8857933 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
8857949 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
8858013 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
8858031 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
8858049 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:8859504 original size:128 final size:128
Alignment explanation
Indices: 8859276--8859526 Score: 502
Period size: 128 Copynumber: 2.0 Consensus size: 128
8859266 ACTCAAGATA
8859276 TGATTTTTAAAACGACTAGTACACAGATTGGGCAGTGTCTGGAAAATAAGTTTTATAAGGGGTTA
1 TGATTTTTAAAACGACTAGTACACAGATTGGGCAGTGTCTGGAAAATAAGTTTTATAAGGGGTTA
8859341 AAGTCAGTTAACACCTCGTGTTCGACTCCGGTGTCGGTTTCGGGTTCGGGGTGTTACACTCTC
66 AAGTCAGTTAACACCTCGTGTTCGACTCCGGTGTCGGTTTCGGGTTCGGGGTGTTACACTCTC
8859404 TGATTTTTAAAACGACTAGTACACAGATTGGGCAGTGTCTGGAAAATAAGTTTTATAAGGGGTTA
1 TGATTTTTAAAACGACTAGTACACAGATTGGGCAGTGTCTGGAAAATAAGTTTTATAAGGGGTTA
8859469 AAGTCAGTTAACACCTCGTGTTCGACTCCGGTGTCGGTTTCGGGTTCGGGGTGTTACA
66 AAGTCAGTTAACACCTCGTGTTCGACTCCGGTGTCGGTTTCGGGTTCGGGGTGTTACA
8859527 TTTGATTGGT
Statistics
Matches: 123, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
128 123 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (128 bp):
TGATTTTTAAAACGACTAGTACACAGATTGGGCAGTGTCTGGAAAATAAGTTTTATAAGGGGTTA
AAGTCAGTTAACACCTCGTGTTCGACTCCGGTGTCGGTTTCGGGTTCGGGGTGTTACACTCTC
Found at i:8864301 original size:45 final size:45
Alignment explanation
Indices: 8864183--8864396 Score: 232
Period size: 45 Copynumber: 4.8 Consensus size: 45
8864173 CATGATGGAC
* * * ** *
8864183 CAGCACATAGC-ACCACCCTTATAATAAATTATATTCGGTGGAAC
1 CAGCACATAGCAACCACCTTTATAATCAATGATACCCGGTGGAAT
* * * ** **** *
8864227 CAGCATATAACAACCACCTCTATTTTCAATGATTTATGGTGGAGT
1 CAGCACATAGCAACCACCTTTATAATCAATGATACCCGGTGGAAT
*
8864272 CAGCACATAGCAACCACCTTTATAATCAATGGTACCCGGTGGAAT
1 CAGCACATAGCAACCACCTTTATAATCAATGATACCCGGTGGAAT
* * *
8864317 CAGCACATAGCAACCACCTTTATAATTAATGGTACCCGATGGAAT
1 CAGCACATAGCAACCACCTTTATAATCAATGATACCCGGTGGAAT
*
8864362 CAACACATAGCAACCACCTTTATAATCAATGATAC
1 CAGCACATAGCAACCACCTTTATAATCAATGATAC
8864397 TCTATACACA
Statistics
Matches: 140, Mismatches: 29, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
44 9 0.06
45 131 0.94
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.26
Consensus pattern (45 bp):
CAGCACATAGCAACCACCTTTATAATCAATGATACCCGGTGGAAT
Found at i:8867886 original size:20 final size:20
Alignment explanation
Indices: 8867861--8867899 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
8867851 TACTGTCTTC
8867861 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TGCTTACTTG
8867881 TTTACTTACTTGCTTACTT
1 TTTACTTACTTGCTTACTT
8867900 AAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.15, C:0.23, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTG
Found at i:8880966 original size:39 final size:37
Alignment explanation
Indices: 8880846--8880972 Score: 139
Period size: 39 Copynumber: 3.3 Consensus size: 37
8880836 AGTTTGAGTC
8880846 TTTAATTATGTCATAATTTGAACATCATTAAT-ATGAATT
1 TTTAATTATGTCATAATTTGAACATCATTAATAATG---T
* *
8880885 TTTAATTATGTCATAATCTGAACAACATTAATAATGGT
1 TTTAATTATGTCATAATTTGAACATCATTAATAAT-GT
* * *
8880923 TTTAATTATGTCATAGTTTAGGACATCTTTAATACATGT
1 TTTAATTATGTCATAATTT-GAACATCATTAATA-ATGT
*
8880962 TTTAAATATGT
1 TTTAATTATGT
8880973 TTAAATTTGG
Statistics
Matches: 76, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
38 18 0.24
39 53 0.70
40 4 0.05
41 1 0.01
ACGTcount: A:0.36, C:0.09, G:0.10, T:0.45
Consensus pattern (37 bp):
TTTAATTATGTCATAATTTGAACATCATTAATAATGT
Found at i:8883067 original size:101 final size:101
Alignment explanation
Indices: 8882942--8883833 Score: 1682
Period size: 101 Copynumber: 8.8 Consensus size: 101
8882932 AAAGTGATGG
*
8882942 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTGTAGTAA
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTGTAGTAA
8883007 TATGTGACGGCTACTATGCGTACCGAATAGTTTCGA
66 TATGTGACGGCTACTATGCGTACCGAATAGTTTCGA
8883043 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTGTAGTAA
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTGTAGTAA
8883108 TATGTGACGGCTACTATGCGTACCGAATAGTTTCGA
66 TATGTGACGGCTACTATGCGTACCGAATAGTTTCGA
8883144 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTGTAGTAA
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTGTAGTAA
8883209 TATGTGACGGCTACTATGCGTACCGAATAGTTTCGA
66 TATGTGACGGCTACTATGCGTACCGAATAGTTTCGA
8883245 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTGTAGTAA
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTGTAGTAA
8883310 TATGTGACGGCTACTATGCGTACCGAATAGTTTCGA
66 TATGTGACGGCTACTATGCGTACCGAATAGTTTCGA
8883346 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTGTAGTAA
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTGTAGTAA
8883411 TATGTGACGGCTACTATGCGTACCGAATAGTTTCGA
66 TATGTGACGGCTACTATGCGTACCGAATAGTTTCGA
8883447 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTGTAGTAA
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTGTAGTAA
8883512 TATGTGACGGCTACTATGCGTACCGAATAGTTTCGA
66 TATGTGACGGCTACTATGCGTACCGAATAGTTTCGA
8883548 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTGTAGTAA
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTGTAGTAA
8883613 TATGTGACGGCTACTATGCGTACCGAATAGTTTCGA
66 TATGTGACGGCTACTATGCGTACCGAATAGTTTCGA
8883649 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTGTAGTAA
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTGTAGTAA
8883714 TATGTGACGGCTACTATGCGTACCGAATAGTTTCGA
66 TATGTGACGGCTACTATGCGTACCGAATAGTTTCGA
* * *
8883750 TCACATGTGTAGTACTATGTGCAGGCTACTACATGTATC-GAATGGTAATA-GTCACATGTGTAG
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAT-G--ATAGGTCGCATGTGTAG
*
8883813 TACTATGTG-CAGGCTACTATG
63 TAATATGTGAC-GGCTACTATG
8883834 TGAATCGAAC
Statistics
Matches: 782, Mismatches: 5, Indels: 7
0.98 0.01 0.01
Matches are distributed among these distances:
100 4 0.01
101 745 0.95
102 30 0.04
103 3 0.00
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (101 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTGTAGTAA
TATGTGACGGCTACTATGCGTACCGAATAGTTTCGA
Found at i:8883898 original size:45 final size:45
Alignment explanation
Indices: 8883842--8883930 Score: 142
Period size: 45 Copynumber: 2.0 Consensus size: 45
8883832 TGTGAATCGA
* *
8883842 ACATCATTGATTAGTAAAGTGGTTGCTATGTGCTGATTCCACCGG
1 ACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCCACCGG
* *
8883887 ACATTATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCG
1 ACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCCACCG
8883931 AGTATCTGTT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.34
Consensus pattern (45 bp):
ACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCCACCGG
Found at i:8884081 original size:16 final size:16
Alignment explanation
Indices: 8884060--8884091 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8884050 TGATTGAAAG
*
8884060 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
8884076 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
8884092 GCAACAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:8886739 original size:25 final size:25
Alignment explanation
Indices: 8886710--8886762 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
8886700 TATAATAGTA
8886710 TGAAAATTGAATTGGAAGATTAAAT
1 TGAAAATTGAATTGGAAGATTAAAT
8886735 TGAAAATTGAATTGGAAGATTAAAT
1 TGAAAATTGAATTGGAAGATTAAAT
8886760 TGA
1 TGA
8886763 GTAGAACGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.21, T:0.32
Consensus pattern (25 bp):
TGAAAATTGAATTGGAAGATTAAAT
Found at i:8889596 original size:149 final size:149
Alignment explanation
Indices: 8889326--8889623 Score: 596
Period size: 149 Copynumber: 2.0 Consensus size: 149
8889316 AAAACGAGTA
8889326 AATTGACATAATCGGTAAAAATACCTAATGTTCATAGGTAAGACTAAGAATTTGATGTTGCCATA
1 AATTGACATAATCGGTAAAAATACCTAATGTTCATAGGTAAGACTAAGAATTTGATGTTGCCATA
8889391 GAAGGGAAAAATGTTTAGCATGTCATAAAACATAAGCAAAAGGAATAAAGCTTAATTTCCGAGCT
66 GAAGGGAAAAATGTTTAGCATGTCATAAAACATAAGCAAAAGGAATAAAGCTTAATTTCCGAGCT
8889456 TAGGGTCAAAATCATAATT
131 TAGGGTCAAAATCATAATT
8889475 AATTGACATAATCGGTAAAAATACCTAATGTTCATAGGTAAGACTAAGAATTTGATGTTGCCATA
1 AATTGACATAATCGGTAAAAATACCTAATGTTCATAGGTAAGACTAAGAATTTGATGTTGCCATA
8889540 GAAGGGAAAAATGTTTAGCATGTCATAAAACATAAGCAAAAGGAATAAAGCTTAATTTCCGAGCT
66 GAAGGGAAAAATGTTTAGCATGTCATAAAACATAAGCAAAAGGAATAAAGCTTAATTTCCGAGCT
8889605 TAGGGTCAAAATCATAATT
131 TAGGGTCAAAATCATAATT
8889624 TTTTGAAACT
Statistics
Matches: 149, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
149 149 1.00
ACGTcount: A:0.42, C:0.12, G:0.18, T:0.28
Consensus pattern (149 bp):
AATTGACATAATCGGTAAAAATACCTAATGTTCATAGGTAAGACTAAGAATTTGATGTTGCCATA
GAAGGGAAAAATGTTTAGCATGTCATAAAACATAAGCAAAAGGAATAAAGCTTAATTTCCGAGCT
TAGGGTCAAAATCATAATT
Found at i:8889969 original size:51 final size:51
Alignment explanation
Indices: 8889893--8890734 Score: 1684
Period size: 51 Copynumber: 16.5 Consensus size: 51
8889883 AAGTGACACG
8889893 TGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGGTAATGGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGGTAATGGTCGCA
8889944 TGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGGTAATGGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGGTAATGGTCGCA
8889995 TGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGGTAATGGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGGTAATGGTCGCA
8890046 TGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGGTAATGGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGGTAATGGTCGCA
8890097 TGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGGTAATGGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGGTAATGGTCGCA
8890148 TGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGGTAATGGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGGTAATGGTCGCA
8890199 TGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGGTAATGGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGGTAATGGTCGCA
8890250 TGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGGTAATGGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGGTAATGGTCGCA
8890301 TGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGGTAATGGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGGTAATGGTCGCA
8890352 TGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGGTAATGGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGGTAATGGTCGCA
8890403 TGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGGTAATGGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGGTAATGGTCGCA
8890454 TGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGGTAATGGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGGTAATGGTCGCA
8890505 TGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGGTAATGGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGGTAATGGTCGCA
8890556 TGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGGTAATGGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGGTAATGGTCGCA
8890607 TGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGGTAATGGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGGTAATGGTCGCA
8890658 TGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGGTAATGGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGGTAATGGTCGCA
8890709 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
8890735 TGTGAACCGA
Statistics
Matches: 791, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 791 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (51 bp):
TGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATGGTAATGGTCGCA
Found at i:8890796 original size:45 final size:45
Alignment explanation
Indices: 8890740--8890832 Score: 132
Period size: 45 Copynumber: 2.1 Consensus size: 45
8890730 TACTATGTGA
* * *
8890740 ACCGAACATCATTGATTAGTAAAGTGGTTGCTATGTGCTGATTCC
1 ACCGAACATCATTGATTAATAAAGTGGTCGCTATGTGCTGAATCC
* * *
8890785 ACCGGACATCATTGATTAATAAGGTGGTCGCTATTTGCTGAATCC
1 ACCGAACATCATTGATTAATAAAGTGGTCGCTATGTGCTGAATCC
8890830 ACC
1 ACC
8890833 AAGTATCTGT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAAGTGGTCGCTATGTGCTGAATCC
Found at i:8893126 original size:59 final size:62
Alignment explanation
Indices: 8893060--8893201 Score: 166
Period size: 63 Copynumber: 2.3 Consensus size: 62
8893050 GTTGATTTCA
* *
8893060 TACAGCATTATTACATGTCTGATTATTT-TAG-T-TAATTCTATTAATTGTGTCTTAGATTG
1 TACAGCATTATTACATGTCTGATTATTTATAGTTCTAAGTCTATTAATGGTGTCTTAGATTG
* * *
8893119 TACAGCATTATTGA-ATGTCTGATTGTTTAGTTGTTCTAAGTCTATTAATGGTGTCTTAGTTTG
1 TACAGCATTATT-ACATGTCTGATTATTTA-TAGTTCTAAGTCTATTAATGGTGTCTTAGATTG
* * *
8893182 TACCGCATTAATACTTGTCT
1 TACAGCATTATTACATGTCT
8893202 AAGTCAGATT
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
59 25 0.36
60 1 0.01
61 2 0.03
62 2 0.03
63 39 0.57
ACGTcount: A:0.25, C:0.12, G:0.16, T:0.47
Consensus pattern (62 bp):
TACAGCATTATTACATGTCTGATTATTTATAGTTCTAAGTCTATTAATGGTGTCTTAGATTG
Found at i:8895279 original size:41 final size:41
Alignment explanation
Indices: 8895223--8895324 Score: 132
Period size: 41 Copynumber: 2.5 Consensus size: 41
8895213 TGATTCAGTA
* *
8895223 CACCGGCACTTAGCCTGCTAGACATATAGTCTGAAATATTT
1 CACCGGCAATAAGCCTGCTAGACATATAGTCTGAAATATTT
* * * * * *
8895264 CACTGGCATTAAGCCTGCTAGACATTTTGTCTGAAGTGTTT
1 CACCGGCAATAAGCCTGCTAGACATATAGTCTGAAATATTT
8895305 CACCGGCAATAAGCCTGCTA
1 CACCGGCAATAAGCCTGCTA
8895325 AGCTCTAAGC
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (41 bp):
CACCGGCAATAAGCCTGCTAGACATATAGTCTGAAATATTT
Found at i:8904839 original size:13 final size:12
Alignment explanation
Indices: 8904810--8904843 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
8904800 GGATTGAAAT
8904810 ATAAAAAAATTG
1 ATAAAAAAATTG
*
8904822 ATAAAAAATTTG
1 ATAAAAAAATTG
8904834 ATTAAAAAAA
1 A-TAAAAAAA
8904844 GAGAGAGATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 12 0.63
13 7 0.37
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (12 bp):
ATAAAAAAATTG
Found at i:8922488 original size:27 final size:28
Alignment explanation
Indices: 8922458--8922510 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
8922448 ATTTGAGTAA
8922458 TTAGGG-C-AAAATTGTGAAAATAAATTT
1 TTAGGGACTAAAA-TGTGAAAATAAATTT
*
8922485 TTAGGGACTAAAATGTGAAATTAAAT
1 TTAGGGACTAAAATGTGAAAATAAAT
8922511 GAAACGTGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 6 0.26
28 13 0.57
29 4 0.17
ACGTcount: A:0.45, C:0.04, G:0.19, T:0.32
Consensus pattern (28 bp):
TTAGGGACTAAAATGTGAAAATAAATTT
Found at i:8925454 original size:17 final size:16
Alignment explanation
Indices: 8925434--8925478 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
8925424 AAAAAAGAAT
8925434 ATATATATAAAAAATTG
1 ATATATA-AAAAAATTG
*
8925451 ATATATAAAAAAATTC
1 ATATATAAAAAAATTG
*
8925467 ATGTA-AAAAAAA
1 ATATATAAAAAAA
8925479 GGTGGTGTGC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
15 7 0.27
16 12 0.46
17 7 0.27
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.29
Consensus pattern (16 bp):
ATATATAAAAAAATTG
Found at i:8927832 original size:157 final size:157
Alignment explanation
Indices: 8927546--8927859 Score: 628
Period size: 157 Copynumber: 2.0 Consensus size: 157
8927536 AAGAATGATA
8927546 AATGTCTTGTGTTTGAGTTTTGCTAACGAAAACGAAATACGAATGTGCCATGATTTATTGTTAAA
1 AATGTCTTGTGTTTGAGTTTTGCTAACGAAAACGAAATACGAATGTGCCATGATTTATTGTTAAA
8927611 TGTGCATGGTTATTTGAATGATGTCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCATATC
66 TGTGCATGGTTATTTGAATGATGTCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCATATC
8927676 CGGACTAAGATCCGAAGGCATTTGTGT
131 CGGACTAAGATCCGAAGGCATTTGTGT
8927703 AATGTCTTGTGTTTGAGTTTTGCTAACGAAAACGAAATACGAATGTGCCATGATTTATTGTTAAA
1 AATGTCTTGTGTTTGAGTTTTGCTAACGAAAACGAAATACGAATGTGCCATGATTTATTGTTAAA
8927768 TGTGCATGGTTATTTGAATGATGTCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCATATC
66 TGTGCATGGTTATTTGAATGATGTCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCATATC
8927833 CGGACTAAGATCCGAAGGCATTTGTGT
131 CGGACTAAGATCCGAAGGCATTTGTGT
8927860 GAGTTACTAA
Statistics
Matches: 157, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
157 157 1.00
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.32
Consensus pattern (157 bp):
AATGTCTTGTGTTTGAGTTTTGCTAACGAAAACGAAATACGAATGTGCCATGATTTATTGTTAAA
TGTGCATGGTTATTTGAATGATGTCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCATATC
CGGACTAAGATCCGAAGGCATTTGTGT
Found at i:8927874 original size:40 final size:41
Alignment explanation
Indices: 8927791--8927936 Score: 158
Period size: 40 Copynumber: 3.6 Consensus size: 41
8927781 TTGAATGATG
* * * *
8927791 TCCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACCAT-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
8927831 TCCGGACTAAGAT-CCGAAGGCATTTGTGTGAGTTACTA-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
8927871 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
8927912 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
8927937 AACGAGGAGC
Statistics
Matches: 88, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
39 1 0.01
40 79 0.90
41 8 0.09
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:8928365 original size:88 final size:88
Alignment explanation
Indices: 8928211--8928387 Score: 345
Period size: 88 Copynumber: 2.0 Consensus size: 88
8928201 AAATTATCCG
8928211 TTTAACTATATGAATGCTATACTTTTGTTGTGCTGGAATTCCTTGCTCAAAACTTACTAAGCATA
1 TTTAACTATATGAATGCTATACTTTTGTTGTGCTGGAATTCCTTGCTCAAAACTTACTAAGCATA
8928276 AATTGCTTACTCCGTTTCATTGC
66 AATTGCTTACTCCGTTTCATTGC
*
8928299 TTTAGCTATATGAATGCTATACTTTTGTTGTGCTGGAATTCCTTGCTCAAAACTTACTAAGCATA
1 TTTAACTATATGAATGCTATACTTTTGTTGTGCTGGAATTCCTTGCTCAAAACTTACTAAGCATA
8928364 AATTGCTTACTCCGTTTCATTGC
66 AATTGCTTACTCCGTTTCATTGC
8928387 T
1 T
8928388 CCTCTGTTTT
Statistics
Matches: 88, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
88 88 1.00
ACGTcount: A:0.25, C:0.19, G:0.14, T:0.41
Consensus pattern (88 bp):
TTTAACTATATGAATGCTATACTTTTGTTGTGCTGGAATTCCTTGCTCAAAACTTACTAAGCATA
AATTGCTTACTCCGTTTCATTGC
Found at i:8928388 original size:42 final size:42
Alignment explanation
Indices: 8928253--8928388 Score: 98
Period size: 42 Copynumber: 3.1 Consensus size: 42
8928243 CTGGAATTCC
8928253 TTGCTCAAAACTTACTAAGCATAAATTGCTTACTCCGTTTCA
1 TTGCTCAAAACTTACTAAGCATAAATTGCTTACTCCGTTTCA
** * ** * * * * *
8928295 TTGCT-TTAGCTATA-TGAATGCTATACTTTTGTTGTGCT-GGAATTCC
1 TTGCTCAAAACT-TACT-AA-GC-ATA-AATTGCT-TACTCCG-TTTCA
8928341 TTGCTCAAAACTTACTAAGCATAAATTGCTTACTCCGTTTCA
1 TTGCTCAAAACTTACTAAGCATAAATTGCTTACTCCGTTTCA
8928383 TTGCTC
1 TTGCTC
8928389 CTCTGTTTTA
Statistics
Matches: 64, Mismatches: 20, Indels: 20
0.62 0.19 0.19
Matches are distributed among these distances:
41 4 0.06
42 21 0.33
43 7 0.11
44 6 0.09
45 7 0.11
46 15 0.23
47 4 0.06
ACGTcount: A:0.26, C:0.21, G:0.13, T:0.40
Consensus pattern (42 bp):
TTGCTCAAAACTTACTAAGCATAAATTGCTTACTCCGTTTCA
Found at i:8932255 original size:78 final size:78
Alignment explanation
Indices: 8932161--8932322 Score: 288
Period size: 78 Copynumber: 2.1 Consensus size: 78
8932151 TCAATGCCAA
* *
8932161 GAAGAAGGCTGAAGATGGCTCCCACAATAAAAAAGATTGTTAAAACTAGTTCTTAAGAAAACTCA
1 GAAGAAGGCTGAAGATGGCTCCCACAATAAAAAAGATTGTTAAAACTACTTCTAAAGAAAACTCA
8932226 AGAGAAAATTCTT
66 AGAGAAAATTCTT
* *
8932239 GAAGAAGGCTGAAGATGGCTCCCACAATCAAAAAGATTGTTAAAACTACTTCTAAAGAAAACTCC
1 GAAGAAGGCTGAAGATGGCTCCCACAATAAAAAAGATTGTTAAAACTACTTCTAAAGAAAACTCA
8932304 AGAGAAAATTCTT
66 AGAGAAAATTCTT
8932317 GAAGAA
1 GAAGAA
8932323 CTCAAACCGA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
78 80 1.00
ACGTcount: A:0.45, C:0.15, G:0.18, T:0.22
Consensus pattern (78 bp):
GAAGAAGGCTGAAGATGGCTCCCACAATAAAAAAGATTGTTAAAACTACTTCTAAAGAAAACTCA
AGAGAAAATTCTT
Found at i:8946724 original size:236 final size:236
Alignment explanation
Indices: 8946311--8946781 Score: 924
Period size: 236 Copynumber: 2.0 Consensus size: 236
8946301 ATCAACATAT
8946311 ATACACAAGGTATCAACCTTTCTAAAAGCCGAAAATTCGTTAGCCGATCGCACGAATACTATTTA
1 ATACACAAGGTATCAACCTTTCTAAAAGCCGAAAATTCGTTAGCCGATCGCACGAATACTATTTA
8946376 AAACGAATCGACTTTTCCAATGCACATGCAAACATACCTTATCATTCGGGTTGGTCAAGCATATT
66 AAACGAATCGACTTTTCCAATGCACATGCAAACATACCTTATCATTCGGGTTGGTCAAGCATATT
8946441 TATTAAATTAGTTACAGCACAAAACGCTCACATTCAAACCCAAGTTTCTTCGGTATTTAACCGAA
131 TATTAAATTAGTTACAGCACAAAACGCTCACATTCAAACCCAAGTTTCTTCGGTATTTAACCGAA
*
8946506 TACAGCCGCAAACACATTTGCCTTCGGGTCTTAACCCGGAC
196 TACAGCCGCAAACACATTTGCCTTCGGGTCATAACCCGGAC
8946547 ATACACAAGGTATCAACCTTTCTAAAAGCCGAAAATTCGTTAGCCGATCGCACGAATACTATTTA
1 ATACACAAGGTATCAACCTTTCTAAAAGCCGAAAATTCGTTAGCCGATCGCACGAATACTATTTA
8946612 AAACGAATCGACTTTTCCAATGCACATGCAAACATACCTTATCATTCGGGTTGGTCAAGCATATT
66 AAACGAATCGACTTTTCCAATGCACATGCAAACATACCTTATCATTCGGGTTGGTCAAGCATATT
8946677 TATTAAATTAGTTACAGCACAAAACGCTCACATTCAAACCCAAGTTTCTTCGGTATTTAACCGAA
131 TATTAAATTAGTTACAGCACAAAACGCTCACATTCAAACCCAAGTTTCTTCGGTATTTAACCGAA
*
8946742 TACAGCCGCAAACACATTTGCCTTCGGGTCATAGCCCGGA
196 TACAGCCGCAAACACATTTGCCTTCGGGTCATAACCCGGA
8946782 TATATCAACT
Statistics
Matches: 233, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
236 233 1.00
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.27
Consensus pattern (236 bp):
ATACACAAGGTATCAACCTTTCTAAAAGCCGAAAATTCGTTAGCCGATCGCACGAATACTATTTA
AAACGAATCGACTTTTCCAATGCACATGCAAACATACCTTATCATTCGGGTTGGTCAAGCATATT
TATTAAATTAGTTACAGCACAAAACGCTCACATTCAAACCCAAGTTTCTTCGGTATTTAACCGAA
TACAGCCGCAAACACATTTGCCTTCGGGTCATAACCCGGAC
Found at i:8952087 original size:15 final size:17
Alignment explanation
Indices: 8952054--8952092 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
8952044 TAAATTTTGA
8952054 CTTTTTTCACTACTAGC
1 CTTTTTTCACTACTAGC
*
8952071 CTTTTTTCTCT-CT-GC
1 CTTTTTTCACTACTAGC
8952086 CTTTTTT
1 CTTTTTT
8952093 ATTTGTCCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.43
16 2 0.10
17 10 0.48
ACGTcount: A:0.08, C:0.28, G:0.05, T:0.59
Consensus pattern (17 bp):
CTTTTTTCACTACTAGC
Found at i:8954776 original size:60 final size:60
Alignment explanation
Indices: 8954696--8954830 Score: 270
Period size: 60 Copynumber: 2.2 Consensus size: 60
8954686 AGATTTGAAA
8954696 TCTTGATTTTCTTGATTCTTAAAATCCCTCAAAACAGCAAAATTGGACCAAGATTCGATT
1 TCTTGATTTTCTTGATTCTTAAAATCCCTCAAAACAGCAAAATTGGACCAAGATTCGATT
8954756 TCTTGATTTTCTTGATTCTTAAAATCCCTCAAAACAGCAAAATTGGACCAAGATTCGATT
1 TCTTGATTTTCTTGATTCTTAAAATCCCTCAAAACAGCAAAATTGGACCAAGATTCGATT
8954816 TCTTGATTTTCTTGA
1 TCTTGATTTTCTTGA
8954831 AAACAAGAAA
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 75 1.00
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.38
Consensus pattern (60 bp):
TCTTGATTTTCTTGATTCTTAAAATCCCTCAAAACAGCAAAATTGGACCAAGATTCGATT
Found at i:8958477 original size:17 final size:16
Alignment explanation
Indices: 8958450--8958534 Score: 70
Period size: 16 Copynumber: 5.2 Consensus size: 16
8958440 TGAATGAAGT
*
8958450 GAGTGGAAAAGAAAGA
1 GAGTTGAAAAGAAAGA
8958466 GAGATTGAAAAGAAA-A
1 GAG-TTGAAAAGAAAGA
8958482 TGAG-TGAAAAAGAAAGA
1 -GAGTTG-AAAAGAAAGA
8958499 GAGCTTGAAAAGAAA-A
1 GAG-TTGAAAAGAAAGA
*
8958515 CGAG-TGAAAAAGAGAGA
1 -GAGTTG-AAAAGAAAGA
8958532 GAG
1 GAG
8958535 CGTCAACAAG
Statistics
Matches: 58, Mismatches: 2, Indels: 18
0.74 0.03 0.23
Matches are distributed among these distances:
15 4 0.07
16 26 0.45
17 26 0.45
18 2 0.03
ACGTcount: A:0.56, C:0.02, G:0.32, T:0.09
Consensus pattern (16 bp):
GAGTTGAAAAGAAAGA
Found at i:8958494 original size:16 final size:15
Alignment explanation
Indices: 8958450--8958527 Score: 61
Period size: 17 Copynumber: 4.8 Consensus size: 15
8958440 TGAATGAAGT
*
8958450 GAGTGGAAAAGAAAGA
1 GAGTGAAAAAGAAA-A
8958466 GAGATTG-AAAAGAAAA
1 GAG--TGAAAAAGAAAA
8958482 TGAGTGAAAAAGAAAGA
1 -GAGTGAAAAAGAAA-A
8958499 GAGCTTG-AAAAGAAAA
1 GAG--TGAAAAAGAAAA
8958515 CGAGTGAAAAAGA
1 -GAGTGAAAAAGA
8958528 GAGAGAGCGT
Statistics
Matches: 53, Mismatches: 0, Indels: 18
0.75 0.00 0.25
Matches are distributed among these distances:
15 4 0.08
16 22 0.42
17 23 0.43
18 4 0.08
ACGTcount: A:0.58, C:0.03, G:0.29, T:0.10
Consensus pattern (15 bp):
GAGTGAAAAAGAAAA
Found at i:8958535 original size:33 final size:33
Alignment explanation
Indices: 8958450--8958566 Score: 139
Period size: 33 Copynumber: 3.6 Consensus size: 33
8958440 TGAATGAAGT
* * *
8958450 GAGTGGAAAAGAAAGAGAGATTGAAAAGAAAAT
1 GAGTGAAAAAGAAAGAGAGCTTGAAAAGAAAAC
8958483 GAGTGAAAAAGAAAGAGAGCTTGAAAAGAAAAC
1 GAGTGAAAAAGAAAGAGAGCTTGAAAAGAAAAC
* * * *
8958516 GAGTGAAAAAGAGAGAGAGCGTCAACAAG-GAAC
1 GAGTGAAAAAGAAAGAGAGCTTGAA-AAGAAAAC
*
8958549 GAGTGAAGAAG-AAGAGAG
1 GAGTGAAAAAGAAAGAGAG
8958567 TGCTCAAACA
Statistics
Matches: 74, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
32 6 0.08
33 65 0.88
34 3 0.04
ACGTcount: A:0.54, C:0.05, G:0.32, T:0.09
Consensus pattern (33 bp):
GAGTGAAAAAGAAAGAGAGCTTGAAAAGAAAAC
Found at i:8964733 original size:40 final size:40
Alignment explanation
Indices: 8964450--8964718 Score: 412
Period size: 40 Copynumber: 6.7 Consensus size: 40
8964440 GAGAATTGAG
*
8964450 AGTGATGTATCTGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
8964490 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
8964530 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTTGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
8964570 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
8964610 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
8964650 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
8964690 GGTGTTATATCCGGGCTAGGTCCCGAAGA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGA
8964719 ACAATCATGC
Statistics
Matches: 210, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 210 1.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:8974562 original size:24 final size:25
Alignment explanation
Indices: 8974535--8974586 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
8974525 GCCTAGCCTC
8974535 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
**
8974559 TTTTGGTAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
8974584 TTT
1 TTT
8974587 CGCACTTCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:8974820 original size:27 final size:27
Alignment explanation
Indices: 8974790--8975039 Score: 236
Period size: 27 Copynumber: 9.3 Consensus size: 27
8974780 GGGGCAAAAT
* * *
8974790 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
8974817 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
8974844 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
8974871 GATAATTCTACCCTACAAGTGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
8974898 GGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
8974925 GGTAATTTTACCCT-CTAGGGGTATTTT
1 GGTAATTCTACCCTAC-AAGGGTATTTC
* ** *
8974952 GGTAATTTTGTAAAC--CAAGGGTATTTT
1 GGTAA--TTCTACCCTACAAGGGTATTTC
* * * * *
8974979 GGTAATTCTATCCTATAGGGGCATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
8975006 AGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
8975033 AGTAATT
1 GGTAATT
8975040 TTGTAAACTA
Statistics
Matches: 188, Mismatches: 30, Indels: 10
0.82 0.13 0.04
Matches are distributed among these distances:
25 5 0.03
26 1 0.01
27 176 0.94
28 1 0.01
29 5 0.03
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:8981595 original size:20 final size:21
Alignment explanation
Indices: 8981558--8981596 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
8981548 TAAAAGTTAG
* *
8981558 AAAAATAATTATTCTAAACGA
1 AAAAATAATTAATATAAACGA
8981579 AAAAATAA-TAATATAAAC
1 AAAAATAATTAATATAAAC
8981597 TTAATTAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.64, C:0.08, G:0.03, T:0.26
Consensus pattern (21 bp):
AAAAATAATTAATATAAACGA
Found at i:8982974 original size:23 final size:23
Alignment explanation
Indices: 8982948--8982991 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
8982938 TAATATAAAA
8982948 TAAAATAACAACAATTCCTATAT
1 TAAAATAACAACAATTCCTATAT
8982971 TAAAATAACAACAATTCCTAT
1 TAAAATAACAACAATTCCTAT
8982992 CACACTGTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.52, C:0.18, G:0.00, T:0.30
Consensus pattern (23 bp):
TAAAATAACAACAATTCCTATAT
Found at i:8983229 original size:16 final size:16
Alignment explanation
Indices: 8983192--8983245 Score: 56
Period size: 16 Copynumber: 3.3 Consensus size: 16
8983182 TAATACATGT
*
8983192 AAATATTATATTAAATTA
1 AAATATTA-ATTTAA-TA
* *
8983210 AAATTTTTATTTAATA
1 AAATATTAATTTAATA
8983226 AAATATTAATTTAA-A
1 AAATATTAATTTAATA
8983241 AAATA
1 AAATA
8983246 CGAATTTAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 6 0.19
16 14 0.45
17 5 0.16
18 6 0.19
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
AAATATTAATTTAATA
Found at i:8983478 original size:54 final size:54
Alignment explanation
Indices: 8983418--8983542 Score: 214
Period size: 54 Copynumber: 2.3 Consensus size: 54
8983408 AAGTCGAAAC
*
8983418 TGAAGCACCCGCACCCGTTGAAGTCAAGGAAGAAGAGAAGGCCGACCCACCGGT
1 TGAAGCACCCGCACCCGTTGAAGTCAAGGAAGAAGAGAAGGCCGACCCACCGAT
* * *
8983472 TGAAGCACCCGCACCCGTTGAAGTCAGGGAAGAAGAGAAGGCCGATCCACCTAT
1 TGAAGCACCCGCACCCGTTGAAGTCAAGGAAGAAGAGAAGGCCGACCCACCGAT
8983526 TGAAGCACCCGCACCCG
1 TGAAGCACCCGCACCCG
8983543 AGACCGTGGT
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 67 1.00
ACGTcount: A:0.30, C:0.31, G:0.28, T:0.10
Consensus pattern (54 bp):
TGAAGCACCCGCACCCGTTGAAGTCAAGGAAGAAGAGAAGGCCGACCCACCGAT
Found at i:8987360 original size:2 final size:2
Alignment explanation
Indices: 8987353--8987382 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
8987343 GCAATGCCAA
8987353 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8987383 TTAATAATCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8991789 original size:49 final size:49
Alignment explanation
Indices: 8991726--8991824 Score: 171
Period size: 49 Copynumber: 2.0 Consensus size: 49
8991716 AGGTCAGGAG
* *
8991726 TTCGAGTCATGATTTTGGAAGCTTTGCTTGTTTAATTTTAATCAATCTC
1 TTCGAGTCACGATTTTGGAAGCTTTGCTAGTTTAATTTTAATCAATCTC
*
8991775 TTCGAGTTACGATTTTGGAAGCTTTGCTAGTTTAATTTTAATCAATCTC
1 TTCGAGTCACGATTTTGGAAGCTTTGCTAGTTTAATTTTAATCAATCTC
8991824 T
1 T
8991825 ACTCTTGGGC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.23, C:0.14, G:0.16, T:0.46
Consensus pattern (49 bp):
TTCGAGTCACGATTTTGGAAGCTTTGCTAGTTTAATTTTAATCAATCTC
Found at i:8992067 original size:11 final size:10
Alignment explanation
Indices: 8992040--8992065 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
8992030 TTTGTTCTTC
8992040 CTTTTTCCAT
1 CTTTTTCCAT
8992050 CTTTTTCCAT
1 CTTTTTCCAT
8992060 CTTTTT
1 CTTTTT
8992066 TCATTTCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.08, C:0.27, G:0.00, T:0.65
Consensus pattern (10 bp):
CTTTTTCCAT
Found at i:8997435 original size:28 final size:28
Alignment explanation
Indices: 8997403--8997470 Score: 102
Period size: 28 Copynumber: 2.4 Consensus size: 28
8997393 CTCACATGAG
*
8997403 TTGTGATATTTGAATTTGCTCGCACAAGC
1 TTGTGATATTTGAATTTGCTCACACAA-C
*
8997432 -TGTGATATTTGAATTTGCTTACACAAC
1 TTGTGATATTTGAATTTGCTCACACAAC
8997459 TTGTGATATTTG
1 TTGTGATATTTG
8997471 GGCTGCTCAC
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 1 0.03
28 35 0.97
ACGTcount: A:0.25, C:0.13, G:0.19, T:0.43
Consensus pattern (28 bp):
TTGTGATATTTGAATTTGCTCACACAAC
Found at i:9013090 original size:79 final size:79
Alignment explanation
Indices: 9012955--9013100 Score: 202
Period size: 79 Copynumber: 1.8 Consensus size: 79
9012945 CATAAATCAA
* ** ** *
9012955 AATCAGTAACAAGCAGTCTAACATGTTCAGATATCGTATATTCCTCATCAACAAAGTAATGTAGA
1 AATCAGTAACAAGCAATCTAACATAATCAGATATCACATATTCCTCATCAACAAAGTAACGTAGA
9013020 GGGTTATAAACTAG
66 GGGTTATAAACTAG
* * * *
9013034 AATCAGTAACAATCAATCTAACATAATCAGATATCACATATTCTTCATTAATAAAGTAACGTAGA
1 AATCAGTAACAAGCAATCTAACATAATCAGATATCACATATTCCTCATCAACAAAGTAACGTAGA
9013099 GG
66 GG
9013101 CGTACCAACA
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
79 57 1.00
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (79 bp):
AATCAGTAACAAGCAATCTAACATAATCAGATATCACATATTCCTCATCAACAAAGTAACGTAGA
GGGTTATAAACTAG
Found at i:9019177 original size:43 final size:43
Alignment explanation
Indices: 9019116--9019224 Score: 200
Period size: 43 Copynumber: 2.5 Consensus size: 43
9019106 GCATTACGCA
* *
9019116 TGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAAGCC
1 TGCTAGGCACGAAGGCCCGAATACACAGCACCGGCACGAAGCC
9019159 TGCTAGGCACGAAGGCCCGAATACACAGCACCGGCACGAAGCC
1 TGCTAGGCACGAAGGCCCGAATACACAGCACCGGCACGAAGCC
9019202 TGCTAGGCACGAAGGCCCGAATA
1 TGCTAGGCACGAAGGCCCGAATA
9019225 TAATACCAGC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 64 1.00
ACGTcount: A:0.30, C:0.32, G:0.28, T:0.10
Consensus pattern (43 bp):
TGCTAGGCACGAAGGCCCGAATACACAGCACCGGCACGAAGCC
Found at i:9019446 original size:57 final size:57
Alignment explanation
Indices: 9019378--9019490 Score: 208
Period size: 57 Copynumber: 2.0 Consensus size: 57
9019368 TATCACCATT
*
9019378 CAAACTTAACCCATAGTGACCATTCGACTATAAGTCATATCCATAAATTATTTATCA
1 CAAACTCAACCCATAGTGACCATTCGACTATAAGTCATATCCATAAATTATTTATCA
*
9019435 CAAACTCAACCCATAGTGACCATTCGACTATAAGTCATATGCATAAATTATTTATC
1 CAAACTCAACCCATAGTGACCATTCGACTATAAGTCATATCCATAAATTATTTATC
9019491 GCGTAACTTA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 54 1.00
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (57 bp):
CAAACTCAACCCATAGTGACCATTCGACTATAAGTCATATCCATAAATTATTTATCA
Found at i:9025057 original size:65 final size:65
Alignment explanation
Indices: 9024953--9025082 Score: 224
Period size: 65 Copynumber: 2.0 Consensus size: 65
9024943 TGCCGAATGA
*
9024953 TTACAACGGCTATTCGATTACTTTCTCCTTTCTCTTATCCGAATTTGCCCCTCTATGCTCTTGAG
1 TTACAACGGCTATTCGATGACTTTCTCCTTTCTCTTATCCGAATTTGCCCCTCTATGCTCTTGAG
* * *
9025018 TTACAACGGTTATTCGATGACTTTCTCTTTTCTCTTATCCGAATTTGCCCCTCTCTGCTCTTGAG
1 TTACAACGGCTATTCGATGACTTTCTCCTTTCTCTTATCCGAATTTGCCCCTCTATGCTCTTGAG
9025083 CTCAAAATTT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
65 61 1.00
ACGTcount: A:0.16, C:0.28, G:0.13, T:0.42
Consensus pattern (65 bp):
TTACAACGGCTATTCGATGACTTTCTCCTTTCTCTTATCCGAATTTGCCCCTCTATGCTCTTGAG
Found at i:9028902 original size:43 final size:43
Alignment explanation
Indices: 9028808--9029047 Score: 367
Period size: 43 Copynumber: 5.6 Consensus size: 43
9028798 CCGGCATTAC
*
9028808 GCCTGCTAGGCATGAAGGCCCGAATACACATCA-CGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
**
9028850 GCCTGCTAGGCACGAAGGCTTGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * *
9028893 GCCTACTAGGCACGAAAGCCCGAATACACATCACCGGCACAAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
9028936 GCCTGCTAGGCACGAAGG-CCGAAATACGCATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCG-AATACACATCACCGGCACGAA
*
9028979 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
9029022 GCCTGCTACGCACGAAAGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
9029048 TAATACCAGC
Statistics
Matches: 179, Mismatches: 16, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
42 33 0.18
43 143 0.80
44 3 0.02
ACGTcount: A:0.32, C:0.33, G:0.24, T:0.11
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:9035927 original size:45 final size:45
Alignment explanation
Indices: 9035842--9035928 Score: 113
Period size: 45 Copynumber: 1.9 Consensus size: 45
9035832 GAATCAAATA
* * * *
9035842 CGATGCCGAGGTCCCATACATGGTCTTACACATAACCACATAGAT
1 CGATGCCAACGTCCCAGACATGGTCTTACACATAAACACATAGAT
*
9035887 CGATGCCAACGTCCCAGACGTGGTCTTACACGA-AAACACATA
1 CGATGCCAACGTCCCAGACATGGTCTTACAC-ATAAACACATA
9035929 TATCTATCCT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
45 35 0.97
46 1 0.03
ACGTcount: A:0.32, C:0.30, G:0.18, T:0.20
Consensus pattern (45 bp):
CGATGCCAACGTCCCAGACATGGTCTTACACATAAACACATAGAT
Found at i:9036796 original size:12 final size:12
Alignment explanation
Indices: 9036779--9036803 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
9036769 TTTTTTATGT
9036779 TTTATTATTACA
1 TTTATTATTACA
9036791 TTTATTATTACA
1 TTTATTATTACA
9036803 T
1 T
9036804 GTTTTACTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (12 bp):
TTTATTATTACA
Found at i:9042344 original size:39 final size:40
Alignment explanation
Indices: 9042193--9042362 Score: 234
Period size: 40 Copynumber: 4.3 Consensus size: 40
9042183 GGACTAAGAT
* *
9042193 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
9042233 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* ** *
9042273 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
9042313 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
9042352 CCGAAGGCATT
1 CCGAAGGCATT
9042363 TGAACGAGGA
Statistics
Matches: 119, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 34 0.29
40 85 0.71
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:9042382 original size:79 final size:80
Alignment explanation
Indices: 9042215--9042397 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
9042205 GTGCGAGATA
* *
9042215 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGG
** **
9042280 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * * *
9042295 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGG
*
9042359 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
9042374 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
9042398 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:9050863 original size:19 final size:18
Alignment explanation
Indices: 9050841--9050880 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
9050831 AATAAAAGAA
9050841 AAATTAAAATGTAAAAAT-T
1 AAATTAAAA-G-AAAAATAT
9050860 AAATTAAAAGAAAAATAT
1 AAATTAAAAGAAAAATAT
9050878 AAA
1 AAA
9050881 AAAAAATAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 6 0.30
18 5 0.25
19 9 0.45
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.25
Consensus pattern (18 bp):
AAATTAAAAGAAAAATAT
Found at i:9058102 original size:18 final size:18
Alignment explanation
Indices: 9058081--9058119 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
9058071 AACCAAAATT
9058081 TAAAAATCAAATTTAAAC
1 TAAAAATCAAATTTAAAC
* *
9058099 TAAAGATCAAATTTATAC
1 TAAAAATCAAATTTAAAC
9058117 TAA
1 TAA
9058120 TTACAGAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.56, C:0.10, G:0.03, T:0.31
Consensus pattern (18 bp):
TAAAAATCAAATTTAAAC
Found at i:9067402 original size:191 final size:191
Alignment explanation
Indices: 9067069--9067443 Score: 660
Period size: 191 Copynumber: 2.0 Consensus size: 191
9067059 ATATTTTTGA
* *
9067069 CTCGATTTATAGAAACGAGGTCCCGATACCTCATTTTTTAAAACCACTTAACGTTAGGGTCATAC
1 CTCGATTTATAGAAACGAGGTCCCGATACATCATTTTTTAAAACCACTTAACCTTAGGGTCATAC
*
9067134 CACTTGAACGTAATAAATCGCTTATTTAACAAAAATCACTATATCAAAAACCATTTTAAAACCAT
66 CACTTGAACGTAATAAATCGCTTATTTAACAAAAATCACTATATAAAAAACCATTTTAAAACCAT
*
9067199 GTTTAACTCGTAAATAATAAATAATAATATTTATGAACTTACTCATTGGATTTGTTGGTAC
131 GTTTAACTCGTAAATAATAAATAATAATATTTACGAACTTACTCATTGGATTTGTTGGTAC
*
9067260 CTCGATTTATAGAAACGAGGTCCCGATACATTATTTTTTAAAACCACTTAACCTTAGGGTCATAC
1 CTCGATTTATAGAAACGAGGTCCCGATACATCATTTTTTAAAACCACTTAACCTTAGGGTCATAC
*
9067325 CACTTGAACTTAATAAATCGCTTATTTAACAAAAATCACTATATAAAAAACCATTTTAAAACCAT
66 CACTTGAACGTAATAAATCGCTTATTTAACAAAAATCACTATATAAAAAACCATTTTAAAACCAT
* * * *
9067390 TTTTAGCTCGTAAATATTAAATAATAATATTTACGAACTTACTCGTTGGATTTG
131 GTTTAACTCGTAAATAATAAATAATAATATTTACGAACTTACTCATTGGATTTG
9067444 GTTTCGCCAA
Statistics
Matches: 174, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
191 174 1.00
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.34
Consensus pattern (191 bp):
CTCGATTTATAGAAACGAGGTCCCGATACATCATTTTTTAAAACCACTTAACCTTAGGGTCATAC
CACTTGAACGTAATAAATCGCTTATTTAACAAAAATCACTATATAAAAAACCATTTTAAAACCAT
GTTTAACTCGTAAATAATAAATAATAATATTTACGAACTTACTCATTGGATTTGTTGGTAC
Found at i:9069908 original size:29 final size:29
Alignment explanation
Indices: 9069865--9069951 Score: 106
Period size: 28 Copynumber: 3.1 Consensus size: 29
9069855 ATGTGACCGA
* * *
9069865 GCCTAACGGGTCATATAAATGTGATTTGG
1 GCCTAATGGGCCATATAAATATGATTTGG
*
9069894 GCCTAATGGGCCATATGAATATGA-TTGG
1 GCCTAATGGGCCATATAAATATGATTTGG
* *
9069922 GCTTAATGGGCCATATAAATTTG-TTTGG
1 GCCTAATGGGCCATATAAATATGATTTGG
9069950 GC
1 GC
9069952 GTTGTAAGGG
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
28 30 0.60
29 20 0.40
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.32
Consensus pattern (29 bp):
GCCTAATGGGCCATATAAATATGATTTGG
Found at i:9077594 original size:29 final size:28
Alignment explanation
Indices: 9077536--9077619 Score: 96
Period size: 28 Copynumber: 3.0 Consensus size: 28
9077526 GTGAGCATGA
** *
9077536 ATATAAATGTGACCGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
*
9077564 ATATAAATGTGATTTGGACCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
9077593 ATATGAATATGATTGGGCTTAATGGGC
1 ATATAAATGTGATTGGGCCTAATGGGC
9077620 AAGATACAGG
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
28 25 0.53
29 22 0.47
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.27
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:9077617 original size:28 final size:29
Alignment explanation
Indices: 9077550--9077619 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 29
9077540 AAATGTGACC
* *
9077550 GGGCCTAACGGGCCATATAAATGTGATTT
1 GGGCCTAATGGGCCATATAAATATGATTT
* *
9077579 GGACCTAATGGGCCATATGAATATGA-TT
1 GGGCCTAATGGGCCATATAAATATGATTT
*
9077607 GGGCTTAATGGGC
1 GGGCCTAATGGGC
9077620 AAGATACAGG
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
28 13 0.37
29 22 0.63
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (29 bp):
GGGCCTAATGGGCCATATAAATATGATTT
Found at i:9089719 original size:31 final size:31
Alignment explanation
Indices: 9089681--9089743 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
9089671 CTTTAATACC
9089681 ACCTTAATAACACTTCGTAAATATTTATAAA
1 ACCTTAATAACACTTCGTAAATATTTATAAA
*
9089712 ACCTTAATAACACTTTGTAAATATTTATAAA
1 ACCTTAATAACACTTCGTAAATATTTATAAA
9089743 A
1 A
9089744 ATATTCTTGG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.46, C:0.14, G:0.03, T:0.37
Consensus pattern (31 bp):
ACCTTAATAACACTTCGTAAATATTTATAAA
Found at i:9093179 original size:48 final size:46
Alignment explanation
Indices: 9093121--9093295 Score: 142
Period size: 48 Copynumber: 3.7 Consensus size: 46
9093111 TATGTGTGAT
9093121 CCCATGTAAGACCATGTCTGGGACATGGCATTGGTATCAATATGAGA
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGG-ATCAATATGAGA
* * **** *
9093168 CATCATGTAAGACCATAG-CTGGG-CTATAGGC-TTCGATGTGCATGA-T
1 C-CCATGTAAGACCAT-GTCTGGGAC-AT-GGCATTGGATCAATATGAGA
* *
9093214 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGA
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGG-ATCAATATGAGA
* * * *
9093261 TCCCATGTAAGACCATATCTAGGATAGGGCATTGG
1 -CCCATGTAAGACCATGTCTGGGACATGGCATTGG
9093296 CATCCTACTA
Statistics
Matches: 99, Mismatches: 19, Indels: 19
0.72 0.14 0.14
Matches are distributed among these distances:
44 4 0.04
45 23 0.23
46 7 0.07
47 8 0.08
48 53 0.54
49 4 0.04
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26
Consensus pattern (46 bp):
CCCATGTAAGACCATGTCTGGGACATGGCATTGGATCAATATGAGA
Found at i:9095726 original size:49 final size:49
Alignment explanation
Indices: 9095662--9095801 Score: 158
Period size: 49 Copynumber: 2.9 Consensus size: 49
9095652 CACAACCGTG
* * *
9095662 TGAAATCATGCAGACCGTGTGGGTAAACCATGTGGACCACACGGCTGTC
1 TGAAATCGTGCAGACCGTGTGGGTAAACCATGTGGACCACACGACTATC
* *
9095711 T-AAAGTCGTGCAGACCGTGTGGGT-AGCCTATGTGGACCACACGACTATG
1 TGAAA-TCGTGCAGACCGTGTGGGTAAACC-ATGTGGACCACACGACTATC
* * * * *
9095760 TGAAATCGTGTAGACCATGTAGGTAGACCATGTGGACAACAC
1 TGAAATCGTGCAGACCGTGTGGGTAAACCATGTGGACCACAC
9095802 AAGCTAGCTT
Statistics
Matches: 76, Mismatches: 11, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
48 6 0.08
49 65 0.86
50 5 0.07
ACGTcount: A:0.28, C:0.22, G:0.29, T:0.21
Consensus pattern (49 bp):
TGAAATCGTGCAGACCGTGTGGGTAAACCATGTGGACCACACGACTATC
Found at i:9097297 original size:18 final size:18
Alignment explanation
Indices: 9097274--9097308 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
9097264 GGCGTATTTG
9097274 CAAACGAGAGAGCTCGCC
1 CAAACGAGAGAGCTCGCC
* *
9097292 CAAACGTGAGAGTTCGC
1 CAAACGAGAGAGCTCGC
9097309 TAAACGTGGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.29, G:0.29, T:0.11
Consensus pattern (18 bp):
CAAACGAGAGAGCTCGCC
Found at i:9098092 original size:20 final size:20
Alignment explanation
Indices: 9098051--9098094 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
9098041 TATTAAAAAT
*
9098051 AATTTTAAAATATAAAATAA
1 AATTTTAAAATATAAAAGAA
* *
9098071 AATTTTAAAATTTAGAAGAA
1 AATTTTAAAATATAAAAGAA
9098091 AATT
1 AATT
9098095 AATTTAAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (20 bp):
AATTTTAAAATATAAAAGAA
Found at i:9098865 original size:23 final size:22
Alignment explanation
Indices: 9098826--9098870 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
9098816 TCAGTTGATC
*
9098826 ATTTTGGTGACCTATATATCCCA
1 ATTTTGCTGACCTATATA-CCCA
9098849 ATTTTGCTGA-CTAATATACCCA
1 ATTTTGCTGACCT-ATATACCCA
9098871 CCAAAATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.29, C:0.22, G:0.11, T:0.38
Consensus pattern (22 bp):
ATTTTGCTGACCTATATACCCA
Found at i:9100989 original size:11 final size:11
Alignment explanation
Indices: 9100975--9101021 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
9100965 ATATTTAAAC
*
9100975 AATAATAACAA
1 AATAATAGCAA
9100986 AATAAT-GCAA
1 AATAATAGCAA
*
9100996 TATAATAGCAA
1 AATAATAGCAA
* *
9101007 AATGACAGCAA
1 AATAATAGCAA
9101018 AATA
1 AATA
9101022 GTAAAAATAG
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
10 8 0.28
11 21 0.72
ACGTcount: A:0.62, C:0.11, G:0.09, T:0.19
Consensus pattern (11 bp):
AATAATAGCAA
Found at i:9104984 original size:106 final size:106
Alignment explanation
Indices: 9104799--9105009 Score: 404
Period size: 106 Copynumber: 2.0 Consensus size: 106
9104789 TTGTCCACGC
9104799 CTTAGATTAACATCTAGCAAAAAGTTAAAATGCATAATCACTTCAACCGTTTAGGCTTTGCCAGG
1 CTTAGATTAACATCTAGCAAAAAGTTAAAATGCATAATCACTTCAACCGTTTAGGCTTTGCCAGG
9104864 TAGCATTGATGATTGAAGGTGGCTATGAGTCATAAATCATG
66 TAGCATTGATGATTGAAGGTGGCTATGAGTCATAAATCATG
* *
9104905 CTTAGATTAACATCTAGTAAAAAGTTAAAATGCATAATCACTTCAACCGTTTAGGCTTTTCCAGG
1 CTTAGATTAACATCTAGCAAAAAGTTAAAATGCATAATCACTTCAACCGTTTAGGCTTTGCCAGG
9104970 TAGCATTGATGATTGAAGGTGGCTATGAGTCATAAATCAT
66 TAGCATTGATGATTGAAGGTGGCTATGAGTCATAAATCAT
9105010 AAACAGTTCC
Statistics
Matches: 103, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
106 103 1.00
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (106 bp):
CTTAGATTAACATCTAGCAAAAAGTTAAAATGCATAATCACTTCAACCGTTTAGGCTTTGCCAGG
TAGCATTGATGATTGAAGGTGGCTATGAGTCATAAATCATG
Found at i:9107550 original size:31 final size:31
Alignment explanation
Indices: 9107482--9107551 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 31
9107472 CAATGGTGTG
* * *
9107482 AAATTAGTCACTAATATTTACGAAAAGTGGT
1 AAATTAATCACTAATATTTACGAAAAATGAT
* * **
9107513 AGATTAATCATTAATATTTTTGAAAAATGAT
1 AAATTAATCACTAATATTTACGAAAAATGAT
9107544 AAATTAAT
1 AAATTAAT
9107552 TACCCAAGCC
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.46, C:0.06, G:0.11, T:0.37
Consensus pattern (31 bp):
AAATTAATCACTAATATTTACGAAAAATGAT
Found at i:9111126 original size:65 final size:66
Alignment explanation
Indices: 9111057--9111181 Score: 171
Period size: 66 Copynumber: 1.9 Consensus size: 66
9111047 CATCCTAGCT
* * * *
9111057 CGTATCCACCTCAGTACTCCGCTTCTTCCAG-CCGTATCCACCACCGTACTCCACTCCTCTCGAT
1 CGTATCCACCGCAGTACTCCACTCCTCCCAGCCCGTATCCACCACCGTACTCCACTCCTCTCGAT
9111121 C
66 C
* * **
9111122 CGTATCCACCGCTGTACTTCACTCCTCCCAGCCCGTATCCACTGCCGTACTCCACTCCTC
1 CGTATCCACCGCAGTACTCCACTCCTCCCAGCCCGTATCCACCACCGTACTCCACTCCTC
9111182 CCGGCTCAAG
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
65 25 0.49
66 26 0.51
ACGTcount: A:0.16, C:0.47, G:0.11, T:0.26
Consensus pattern (66 bp):
CGTATCCACCGCAGTACTCCACTCCTCCCAGCCCGTATCCACCACCGTACTCCACTCCTCTCGAT
C
Found at i:9111182 original size:33 final size:32
Alignment explanation
Indices: 9111057--9111183 Score: 137
Period size: 33 Copynumber: 3.9 Consensus size: 32
9111047 CATCCTAGCT
* * * * *
9111057 CGTATCCACCTCAGTACTCCGCTTCTTCCAGC
1 CGTATCCACCGCCGTACTCCACTCCTCCCAGC
* * *
9111089 CGTATCCACCACCGTACTCCACTCCTCTCGATC
1 CGTATCCACCGCCGTACTCCACTCCTC-CCAGC
* *
9111122 CGTATCCACCGCTGTACTTCACTCCTCCCAGCC
1 CGTATCCACCGCCGTACTCCACTCCTCCCAG-C
*
9111155 CGTATCCACTGCCGTACTCCACTCCTCCC
1 CGTATCCACCGCCGTACTCCACTCCTCCC
9111184 GGCTCAAGTT
Statistics
Matches: 78, Mismatches: 15, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
32 24 0.31
33 54 0.69
ACGTcount: A:0.16, C:0.48, G:0.11, T:0.25
Consensus pattern (32 bp):
CGTATCCACCGCCGTACTCCACTCCTCCCAGC
Found at i:9111482 original size:77 final size:77
Alignment explanation
Indices: 9111377--9111520 Score: 216
Period size: 77 Copynumber: 1.9 Consensus size: 77
9111367 AATAATTTCA
* ** *
9111377 TATTTATGTAATGAATTTTTTGGAATTTTATTTATCAATTTAATTTGTTTTTTTTGTAATTTAAA
1 TATTTATGTAATGAATTTTTTGCAATTTTATTTATCAATTTAATGGGTTTTTTTTGCAATTTAAA
9111442 TAGTCAACTTTG
66 TAGTCAACTTTG
* * * *
9111454 TATTTATGTAATGATTTTTTTTCTATTTTATTTATCAATTTTATGGGTTTTTTTTGCAATTTAAA
1 TATTTATGTAATGAATTTTTTGCAATTTTATTTATCAATTTAATGGGTTTTTTTTGCAATTTAAA
9111519 TA
66 TA
9111521 AATAAACTTT
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
77 59 1.00
ACGTcount: A:0.27, C:0.04, G:0.10, T:0.59
Consensus pattern (77 bp):
TATTTATGTAATGAATTTTTTGCAATTTTATTTATCAATTTAATGGGTTTTTTTTGCAATTTAAA
TAGTCAACTTTG
Found at i:9119272 original size:47 final size:48
Alignment explanation
Indices: 9119156--9119284 Score: 188
Period size: 47 Copynumber: 2.7 Consensus size: 48
9119146 GCGAATGATG
* * *
9119156 CCTTGATTTGGCTACGGGCCATGGTATAGGTATTTCAGAGAGGAGTTA
1 CCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCAGAGAGAAGTTA
* *
9119204 CCTTGATTTGGTTACGGGCCATGGTATAGGTACTCCAG-GATAAGTTA
1 CCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCAGAGAGAAGTTA
* *
9119251 CCTTAATTTGGCTACGAGCCATGGTATAGGTACT
1 CCTTGATTTGGCTACGGGCCATGGTATAGGTACT
9119285 TATCGATTGA
Statistics
Matches: 73, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
47 38 0.52
48 35 0.48
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (48 bp):
CCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCAGAGAGAAGTTA
Found at i:9126347 original size:48 final size:48
Alignment explanation
Indices: 9126286--9126514 Score: 160
Period size: 48 Copynumber: 4.8 Consensus size: 48
9126276 AGGTTGATGA
* * *
9126286 GATCCCGTATAAGACCATATCTGGGATATGACATCGACATCGATATGT
1 GATCCCATGTAAGACCATATCTGGGATATGGCATCGACATCGATATGT
* * * * *
9126334 GATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCATCGATATGG
1 GATCCCATGTAAGACCATATCTGGGATATGGCATCGACATCGATATGT
** * * * * * * *
9126382 GAATATCGTGTAAGACTATAGCTAGGCTATTGGCTTCG--AT--ATGTGT
1 G-ATCCCATGTAAGACCATATCTGGGATA-TGGCATCGACATCGATATGT
* * * * *
9126428 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATAAGT
1 GATCCCATGTAAGACCATATCTGGGATATGGCATCGACATCGATATGT
* ** * * *
9126476 GGTCCCATACAAGACTATATCCGGGATATGGCATTGACA
1 GATCCCATGTAAGACCATATCTGGGATATGGCATCGACA
9126515 CCCTACTATG
Statistics
Matches: 133, Mismatches: 42, Indels: 12
0.71 0.22 0.06
Matches are distributed among these distances:
44 6 0.05
45 18 0.14
46 7 0.05
48 78 0.59
49 18 0.14
50 6 0.05
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.27
Consensus pattern (48 bp):
GATCCCATGTAAGACCATATCTGGGATATGGCATCGACATCGATATGT
Found at i:9135691 original size:12 final size:12
Alignment explanation
Indices: 9135670--9135699 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
9135660 ATTGTTTCAC
9135670 TTTT-TCATTTA
1 TTTTCTCATTTA
9135681 TTTTCTCATTTA
1 TTTTCTCATTTA
9135693 TTTTCTC
1 TTTTCTC
9135700 TTTTTTCGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 4 0.22
12 14 0.78
ACGTcount: A:0.13, C:0.17, G:0.00, T:0.70
Consensus pattern (12 bp):
TTTTCTCATTTA
Found at i:9137694 original size:28 final size:28
Alignment explanation
Indices: 9137654--9137732 Score: 95
Period size: 28 Copynumber: 2.8 Consensus size: 28
9137644 GCAATCAAAT
* * *
9137654 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
9137682 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
** *
9137710 ATAACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
9137733 CGAATGATTC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.35, C:0.11, G:0.24, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:9140530 original size:22 final size:22
Alignment explanation
Indices: 9140505--9140549 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
9140495 ATTATGATGA
9140505 TTGATATGT-TGAGATTGATATT
1 TTGATATGTATGAGATT-ATATT
*
9140527 TTGATATGTATGTGATTATATT
1 TTGATATGTATGAGATTATATT
9140549 T
1 T
9140550 GTGTTGATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.27, C:0.00, G:0.20, T:0.53
Consensus pattern (22 bp):
TTGATATGTATGAGATTATATT
Found at i:9144368 original size:16 final size:16
Alignment explanation
Indices: 9144347--9144382 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
9144337 TAATTAAGGG
9144347 GATTTGGGAAAAAATC
1 GATTTGGGAAAAAATC
*
9144363 GATTTGGGAAAAAATT
1 GATTTGGGAAAAAATC
9144379 GATT
1 GATT
9144383 ATAATTTGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.42, C:0.03, G:0.25, T:0.31
Consensus pattern (16 bp):
GATTTGGGAAAAAATC
Found at i:9144705 original size:6 final size:6
Alignment explanation
Indices: 9144696--9145577 Score: 1764
Period size: 6 Copynumber: 147.0 Consensus size: 6
9144686 TTAGATTTCA
9144696 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
9144744 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
9144792 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
9144840 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
9144888 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
9144936 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
9144984 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
9145032 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
9145080 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
9145128 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
9145176 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
9145224 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
9145272 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
9145320 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
9145368 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
9145416 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
9145464 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
9145512 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
9145560 ATTTTG ATTTTG ATTTTG
1 ATTTTG ATTTTG ATTTTG
9145578 GGTTATTTCA
Statistics
Matches: 876, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 876 1.00
ACGTcount: A:0.17, C:0.00, G:0.17, T:0.67
Consensus pattern (6 bp):
ATTTTG
Found at i:9145952 original size:62 final size:62
Alignment explanation
Indices: 9145851--9145982 Score: 219
Period size: 62 Copynumber: 2.1 Consensus size: 62
9145841 AAAGTGTTTG
9145851 GTTATTGTCTGCCATATGCATGACAGAAATGGTTATGTTTGTATTAAACTATTTTTGTATTA
1 GTTATTGTCTGCCATATGCATGACAGAAATGGTTATGTTTGTATTAAACTATTTTTGTATTA
* * * * *
9145913 GTTATTGTCTGCCATGTGCATGACATAAATGGTTGTGTTTGTATTAAATTATTTTTGTATTG
1 GTTATTGTCTGCCATATGCATGACAGAAATGGTTATGTTTGTATTAAACTATTTTTGTATTA
9145975 GTTATTGT
1 GTTATTGT
9145983 TTGATAGAAA
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 65 1.00
ACGTcount: A:0.24, C:0.08, G:0.20, T:0.48
Consensus pattern (62 bp):
GTTATTGTCTGCCATATGCATGACAGAAATGGTTATGTTTGTATTAAACTATTTTTGTATTA
Found at i:9148098 original size:28 final size:28
Alignment explanation
Indices: 9148053--9148120 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 28
9148043 TGTGTGTGTC
*
9148053 TGACTGTTTTTT--TAATATGCATGCAA
1 TGACTATTTTTTAATAATATGCATGCAA
* * *
9148079 TGAGTATTTTTTAATAATATGCATGTAG
1 TGACTATTTTTTAATAATATGCATGCAA
9148107 TGACTATTTTTTAA
1 TGACTATTTTTTAA
9148121 GTGTGTCTGT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
26 10 0.29
28 25 0.71
ACGTcount: A:0.29, C:0.07, G:0.15, T:0.49
Consensus pattern (28 bp):
TGACTATTTTTTAATAATATGCATGCAA
Found at i:9148817 original size:21 final size:21
Alignment explanation
Indices: 9148793--9148867 Score: 70
Period size: 21 Copynumber: 3.7 Consensus size: 21
9148783 ATAACCAAGT
9148793 GGTTGCCCTAACTCAGCAACA
1 GGTTGCCCTAACTCAGCAACA
* * *
9148814 GGTTACCCTAAATCAGCAAGA
1 GGTTGCCCTAACTCAGCAACA
9148835 GAGTAT-CCC-AACT---CAACA
1 G-GT-TGCCCTAACTCAGCAACA
9148853 GGTTGCCCTAACTCA
1 GGTTGCCCTAACTCA
9148868 ATTACAAACT
Statistics
Matches: 43, Mismatches: 5, Indels: 13
0.70 0.08 0.21
Matches are distributed among these distances:
16 1 0.02
17 5 0.12
18 9 0.21
21 22 0.51
22 5 0.12
23 1 0.02
ACGTcount: A:0.32, C:0.31, G:0.17, T:0.20
Consensus pattern (21 bp):
GGTTGCCCTAACTCAGCAACA
Found at i:9170261 original size:83 final size:83
Alignment explanation
Indices: 9170122--9170366 Score: 472
Period size: 83 Copynumber: 3.0 Consensus size: 83
9170112 CAACATAACC
*
9170122 TAGACGACATCATGACATAGTGCTAATGTTAACAACCATATTTTGGGTAGATTTTCTTAGATTTT
1 TAGACGACATCATGACATAGTGCTAACGTTAACAACCATATTTTGGGTAGATTTTCTTAGATTTT
9170187 ATTTCTTACTTGCATTCT
66 ATTTCTTACTTGCATTCT
9170205 TAGACGACATCATGACATAGTGCTAACGTTAACAACCATATTTTGGGTAGATTTTCTTAGATTTT
1 TAGACGACATCATGACATAGTGCTAACGTTAACAACCATATTTTGGGTAGATTTTCTTAGATTTT
9170270 ATTTCTTACTTGCATTCT
66 ATTTCTTACTTGCATTCT
*
9170288 TAGACGACATCATGACATAGTGCTAACGTTAACAACCATATTTTGGGTAGATTTTCTTAGATTCT
1 TAGACGACATCATGACATAGTGCTAACGTTAACAACCATATTTTGGGTAGATTTTCTTAGATTTT
9170353 ATTTCTTACTTGCA
66 ATTTCTTACTTGCA
9170367 CTCAAAGTAT
Statistics
Matches: 160, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 160 1.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (83 bp):
TAGACGACATCATGACATAGTGCTAACGTTAACAACCATATTTTGGGTAGATTTTCTTAGATTTT
ATTTCTTACTTGCATTCT
Found at i:9174515 original size:27 final size:26
Alignment explanation
Indices: 9174485--9174540 Score: 60
Period size: 26 Copynumber: 2.1 Consensus size: 26
9174475 TGATTTTGAG
*
9174485 TTAATAAAATC-CTCTTTGAGTTTTGTT
1 TTAA-AAAATCTCTC-TTGAGTTTTCTT
* *
9174512 TTAAATAATTTCTCTTGAGTTTTCTT
1 TTAAAAAATCTCTCTTGAGTTTTCTT
9174538 TTA
1 TTA
9174541 GAAGAGTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
26 18 0.72
27 7 0.28
ACGTcount: A:0.25, C:0.11, G:0.09, T:0.55
Consensus pattern (26 bp):
TTAAAAAATCTCTCTTGAGTTTTCTT
Found at i:9176284 original size:37 final size:38
Alignment explanation
Indices: 9176201--9176287 Score: 92
Period size: 37 Copynumber: 2.3 Consensus size: 38
9176191 TTTGGAAAAA
*
9176201 TTTATAATTTTGTTTTACATTTTTATAATTTTTTGGAAT
1 TTTA-AATTTTTTTTTACATTTTTATAATTTTTTGGAAT
* *
9176240 TGT-AATTTTTTTTTA-A-TTTTATGATTTTTT-GAACTT
1 TTTAAATTTTTTTTTACATTTTTATAATTTTTTGGAA--T
9176276 TTTAAATTTTTT
1 TTTAAATTTTTT
9176288 AATTATAATT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
34 3 0.07
35 13 0.32
36 4 0.10
37 19 0.46
39 2 0.05
ACGTcount: A:0.24, C:0.02, G:0.07, T:0.67
Consensus pattern (38 bp):
TTTAAATTTTTTTTTACATTTTTATAATTTTTTGGAAT
Found at i:9176947 original size:21 final size:22
Alignment explanation
Indices: 9176923--9176972 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
9176913 TTATGTGTAT
9176923 ATATTATATATT-ATAAAAATA
1 ATATTATATATTCATAAAAATA
9176944 ATA-TACT-TATTCATAAAAATA
1 ATATTA-TATATTCATAAAAATA
*
9176965 ATGTTATA
1 ATATTATA
9176973 AATATTTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 7
0.75 0.03 0.22
Matches are distributed among these distances:
20 6 0.25
21 16 0.67
22 2 0.08
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (22 bp):
ATATTATATATTCATAAAAATA
Done.