Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 32 of 276
Found at i:10036932 original size:40 final size:40
Alignment explanation
Indices: 10036877--10037344 Score: 918
Period size: 40 Copynumber: 11.7 Consensus size: 40
10036867 GAGCATTGGA
10036877 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
10036917 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
10036957 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
10036997 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
10037037 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
10037077 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
10037117 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
10037157 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
10037197 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
10037237 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
10037277 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
10037317 ATATGTTCGGGCTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
10037345 ATGTGTTTGC
Statistics
Matches: 426, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 426 1.00
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:10047513 original size:79 final size:80
Alignment explanation
Indices: 10047377--10047561 Score: 216
Period size: 79 Copynumber: 2.3 Consensus size: 80
10047367 TTGAATGATG
* *
10047377 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
10047442 GTGCGAGATACTA-A
66 GTGCGAGATACTATA
* * * **
10047456 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
10047518 ATTGTGCGAGTTACTATA
63 ATTGTGCGAGATACTATA
* *
10047536 ACCGGGCTATGTCCCGAAGGCGTTTG
1 TCCGGGCTAAGTCCCGAAGGC-TTTG
10047562 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 32 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
GTGCGAGATACTATA
Found at i:10047568 original size:40 final size:40
Alignment explanation
Indices: 10047377--10047561 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
10047367 TTGAATGATG
* * * *
10047377 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
10047417 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
10047457 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
10047496 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
10047537 -CCGGGCTATGTCCCGAAGGCGTTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
10047562 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:10047583 original size:79 final size:79
Alignment explanation
Indices: 10047430--10047594 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
10047420 GGACTAAGAT
* * **
10047430 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
10047495 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
10047509 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCGTTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
10047572 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
10047588 CCGAAGG
1 CCGAAGG
10047595 TACGTGGTTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:10047633 original size:49 final size:49
Alignment explanation
Indices: 10047573--10047670 Score: 169
Period size: 49 Copynumber: 2.0 Consensus size: 49
10047563 ACGAGTAGCT
* *
10047573 ATATCCGGTTAAATTCCGAAGGTACGTGGTTTGGGAATGAATGATCTTG
1 ATATCCGGTTAAATTCCCAAGGTACGTGATTTGGGAATGAATGATCTTG
*
10047622 ATATCCTGTTAAATTCCCAAGGTACGTGATTTGGGAATGAATGATCTTG
1 ATATCCGGTTAAATTCCCAAGGTACGTGATTTGGGAATGAATGATCTTG
10047671 CTGTAAAAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.34
Consensus pattern (49 bp):
ATATCCGGTTAAATTCCCAAGGTACGTGATTTGGGAATGAATGATCTTG
Found at i:10055501 original size:39 final size:40
Alignment explanation
Indices: 10055400--10055584 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
10055390 TTGAATGATG
* * * *
10055400 TCCGGGCTAAGTCCCGATGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
10055439 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
10055480 TCCGGGCTAAG-CCCGAAGGCATTTGCGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
10055519 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
10055558 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
10055585 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
39 35 0.29
40 76 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:10055606 original size:79 final size:79
Alignment explanation
Indices: 10055453--10055617 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
10055443 GGACTAAGAT
* * **
10055453 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGCGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
10055518 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
10055532 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
10055595 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
10055611 CCGAAGG
1 CCGAAGG
10055618 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:10059901 original size:32 final size:33
Alignment explanation
Indices: 10059855--10059926 Score: 119
Period size: 32 Copynumber: 2.2 Consensus size: 33
10059845 ATAACACAGC
*
10059855 ATCAGTACAGTCTGGGCCAAAGCCCTATTCAGT
1 ATCAGTACAGTCTGGACCAAAGCCCTATTCAGT
10059888 ATCAGTA-AGTCTGGACCAAAGCCCTATTCAGT
1 ATCAGTACAGTCTGGACCAAAGCCCTATTCAGT
*
10059920 AACAGTA
1 ATCAGTA
10059927 TAGTGCAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
32 30 0.81
33 7 0.19
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (33 bp):
ATCAGTACAGTCTGGACCAAAGCCCTATTCAGT
Found at i:10067660 original size:33 final size:33
Alignment explanation
Indices: 10067618--10067694 Score: 136
Period size: 33 Copynumber: 2.3 Consensus size: 33
10067608 ATAACACAGC
10067618 ATCAGTACAGTCTGGGCAAAAGCCCTAGTCAGT
1 ATCAGTACAGTCTGGGCAAAAGCCCTAGTCAGT
* *
10067651 ATCAGTACAGTCTGGGCCAAAGCCCTATTCAGT
1 ATCAGTACAGTCTGGGCAAAAGCCCTAGTCAGT
10067684 ATCAGTACAGT
1 ATCAGTACAGT
10067695 GCAAAATGCA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (33 bp):
ATCAGTACAGTCTGGGCAAAAGCCCTAGTCAGT
Found at i:10071462 original size:14 final size:15
Alignment explanation
Indices: 10071445--10071473 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
10071435 TTACAAAAAT
10071445 TTCACACAT-ATAAA
1 TTCACACATGATAAA
10071459 TTCACACATGATAAA
1 TTCACACATGATAAA
10071474 CACAAAATAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.48, C:0.21, G:0.03, T:0.28
Consensus pattern (15 bp):
TTCACACATGATAAA
Found at i:10079744 original size:14 final size:15
Alignment explanation
Indices: 10079727--10079755 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
10079717 TCATGAAAAT
10079727 TTCACACAT-ATAAA
1 TTCACACATAATAAA
10079741 TTCACACATAATAAA
1 TTCACACATAATAAA
10079756 CACAAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:10082638 original size:29 final size:29
Alignment explanation
Indices: 10082604--10082674 Score: 106
Period size: 29 Copynumber: 2.4 Consensus size: 29
10082594 ATTCATATTT
*
10082604 CCCATTAGGCCCAAATCACCTGTATATGG
1 CCCATTAGGCCCAAATCACATGTATATGG
* *
10082633 CCCATTAGGCCCAAATCATATTTATATGG
1 CCCATTAGGCCCAAATCACATGTATATGG
*
10082662 CCCGTTAGGCCCA
1 CCCATTAGGCCCA
10082675 GTCACATTCA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.25
Consensus pattern (29 bp):
CCCATTAGGCCCAAATCACATGTATATGG
Found at i:10082673 original size:58 final size:57
Alignment explanation
Indices: 10082564--10082674 Score: 141
Period size: 58 Copynumber: 1.9 Consensus size: 57
10082554 AAATTCACAT
* * **
10082564 ACCTATATCTGGCCCATTAAGCCCATTCATATTCATATTTCCCATTAGGCCCAAATC
1 ACCTATATATGGCCCATTAAGCCCAATCATATTCATATGGCCCATTAGGCCCAAATC
* * * *
10082621 ACCTGTATATGGCCCATTAGGCCCAAATCATATTTATATGGCCCGTTAGGCCCA
1 ACCTATATATGGCCCATTAAGCCC-AATCATATTCATATGGCCCATTAGGCCCA
10082675 GTCACATTCA
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
57 21 0.47
58 24 0.53
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.30
Consensus pattern (57 bp):
ACCTATATATGGCCCATTAAGCCCAATCATATTCATATGGCCCATTAGGCCCAAATC
Found at i:10082925 original size:8 final size:8
Alignment explanation
Indices: 10082897--10082948 Score: 52
Period size: 8 Copynumber: 6.6 Consensus size: 8
10082887 TATAGCCAAA
10082897 CTTTT-GG
1 CTTTTCGG
10082904 CTTTTCGG
1 CTTTTCGG
* *
10082912 CATTTCAG
1 CTTTTCGG
**
10082920 CTTTTCAA
1 CTTTTCGG
10082928 CTTTTCGG
1 CTTTTCGG
*
10082936 CATTTCGG
1 CTTTTCGG
10082944 CTTTT
1 CTTTT
10082949 GCTGATACAA
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
7 5 0.14
8 31 0.86
ACGTcount: A:0.10, C:0.23, G:0.17, T:0.50
Consensus pattern (8 bp):
CTTTTCGG
Found at i:10086065 original size:67 final size:67
Alignment explanation
Indices: 10085988--10086163 Score: 273
Period size: 67 Copynumber: 2.6 Consensus size: 67
10085978 ATATTTATAT
*
10085988 ATATATGTGGCGAAGCCACC-GAATTACAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAA
1 ATATATGTGGCGAGGCCACCAG-ATTACAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAA
10086052 CAG
65 CAG
* * * *
10086055 ATATATGTGGCGAGGCCACCAGATTACAGCGAGGTTGCAAGATATTGTGAGGAAGTCACCAGAAT
1 ATATATGTGGCGAGGCCACCAGATTACAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
10086120 AG
66 AG
* *
10086122 ATATATGTGGCGAGGCCACCAGATTGCAGCGAGTCTGCCAGA
1 ATATATGTGGCGAGGCCACCAGATTACAGCGAGGCTGCCAGA
10086164 ATGCTTCCTC
Statistics
Matches: 99, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
67 98 0.99
68 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.29, T:0.19
Consensus pattern (67 bp):
ATATATGTGGCGAGGCCACCAGATTACAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAAC
AG
Found at i:10086074 original size:27 final size:26
Alignment explanation
Indices: 10086026--10086077 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
10086016 GCGAGGCTGC
*
10086026 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
10086052 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
10086078 TTACAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:10086824 original size:27 final size:27
Alignment explanation
Indices: 10086794--10086938 Score: 168
Period size: 27 Copynumber: 5.4 Consensus size: 27
10086784 AGGGCAAAAT
* *
10086794 GGTAACTT-TACCCCACAAGGGTATCTC
1 GGTAA-TTCTACCCTACAAGGGTATTTC
* * *
10086821 GGTAATTCAACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
10086848 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
10086875 GGTAATTCTATCCTA-GAGGGATATTTC
1 GGTAATTCTACCCTACAAGGG-TATTTC
* *
10086902 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
10086929 GGTAATTCTA
1 GGTAATTCTA
10086939 AAACTTATCC
Statistics
Matches: 99, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
26 6 0.06
27 90 0.91
28 3 0.03
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:10094031 original size:8 final size:8
Alignment explanation
Indices: 10094020--10094046 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
10094010 TTTTTCAACA
10094020 TTTCGGCT
1 TTTCGGCT
10094028 TTTCGGCT
1 TTTCGGCT
10094036 TTTCGGCT
1 TTTCGGCT
10094044 TTT
1 TTT
10094047 GCCGATCTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.00, C:0.22, G:0.22, T:0.56
Consensus pattern (8 bp):
TTTCGGCT
Found at i:10097682 original size:46 final size:46
Alignment explanation
Indices: 10097615--10097704 Score: 171
Period size: 46 Copynumber: 2.0 Consensus size: 46
10097605 TTTAAGTGTA
10097615 AAAAAAAATATCTGTTCTGAATTGGGTTAGAATCGGTAATGCCTCG
1 AAAAAAAATATCTGTTCTGAATTGGGTTAGAATCGGTAATGCCTCG
*
10097661 AAAAAAAATATTTGTTCTGAATTGGGTTAGAATCGGTAATGCCT
1 AAAAAAAATATCTGTTCTGAATTGGGTTAGAATCGGTAATGCCT
10097705 TGTAACCCCA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (46 bp):
AAAAAAAATATCTGTTCTGAATTGGGTTAGAATCGGTAATGCCTCG
Found at i:10099382 original size:27 final size:26
Alignment explanation
Indices: 10099334--10099393 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
10099324 GCGAAGCTGC
*
10099334 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
10099361 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
10099387 CAGATAT
1 CAGATAT
10099394 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:10099438 original size:71 final size:67
Alignment explanation
Indices: 10099361--10099502 Score: 176
Period size: 67 Copynumber: 2.1 Consensus size: 67
10099351 TCACCAGATA
* * *
10099361 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACCAGATTGCAACGA
1 CAGATATTGTGACGAAGCCACCAGAACAG----ATATATGTGGCGAAGCCACCAGATTGCAACGA
10099426 GGCTAC
62 GGCTAC
* * * *
10099432 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGTCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAACGAGGCT
*
10099497 GC
66 AC
10099499 CAGA
1 CAGA
10099503 ACGCTTCCTC
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
67 38 0.60
71 25 0.40
ACGTcount: A:0.32, C:0.23, G:0.27, T:0.19
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAACGAGGCT
AC
Found at i:10099480 original size:27 final size:26
Alignment explanation
Indices: 10099432--10099483 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
10099422 ACGAGGCTAC
*
10099432 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
10099458 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
10099484 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:10103823 original size:46 final size:45
Alignment explanation
Indices: 10103766--10103938 Score: 161
Period size: 46 Copynumber: 3.8 Consensus size: 45
10103756 TTGGGCATCC
*
10103766 GAACTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATG-GAATGTCT
* *** * * *
10103812 GAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA--TCC
1 GAACTCGTTGAGTTGAGTCTGAGTTC-ACTTATG-GA-T-GGAATGTCT
* *
10103859 GAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGTGAATGCCT
1 GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATG-GAATGTCT
* * *
10103905 GAGCTCGTTGAATTGAGTCTAAGTTCACTTATGG
1 GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGG
10103939 GCGGGTTACA
Statistics
Matches: 101, Mismatches: 19, Indels: 14
0.75 0.14 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 61 0.60
47 30 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.32
Consensus pattern (45 bp):
GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGGAATGTCT
Found at i:10103930 original size:93 final size:93
Alignment explanation
Indices: 10103759--10103930 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
10103749 AGGATATTTG
* *
10103759 GGCATCCGAACTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGCCTGAACTCGTTGAA
*
10103824 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCAAGTTCGAGAGATGTAACTA
* * * *
10103852 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGTGAATGCCTGAGCTCGTTGAA
1 GGCATCCGAACTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGCCTGAACTCGTTGAA
*
10103917 TTGAGTCTAAGTTC
66 TTGAGTCCAAGTTC
10103931 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.31
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGCCTGAACTCGTTGAA
TTGAGTCCAAGTTCGAGAGATGTAACTA
Found at i:10113800 original size:33 final size:33
Alignment explanation
Indices: 10113755--10113818 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
10113745 GGTAACAGTA
*
10113755 TGGGCCTGAGCCCTATTA-AGAAACAGTACAGAG
1 TGGGCCTGAGCCC-AATACAGAAACAGTACAGAG
*
10113788 TGGGCCTTAGCCCAATACAGAAACAGTACAG
1 TGGGCCTGAGCCCAATACAGAAACAGTACAG
10113819 TACAGTAATG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 3 0.11
33 25 0.89
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.17
Consensus pattern (33 bp):
TGGGCCTGAGCCCAATACAGAAACAGTACAGAG
Found at i:10113948 original size:26 final size:26
Alignment explanation
Indices: 10113917--10113971 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
10113907 AACACACCAA
* *
10113917 TATCGCAGCAAGGCTACCAGTAATAG
1 TATCGCAACAAAGCTACCAGTAATAG
*
10113943 TATCGCAACAAAGCTTCCAGTAATAG
1 TATCGCAACAAAGCTACCAGTAATAG
10113969 TAT
1 TAT
10113972 TATAGCAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.36, C:0.22, G:0.18, T:0.24
Consensus pattern (26 bp):
TATCGCAACAAAGCTACCAGTAATAG
Found at i:10113980 original size:26 final size:26
Alignment explanation
Indices: 10113923--10114024 Score: 96
Period size: 26 Copynumber: 3.9 Consensus size: 26
10113913 CCAATATCGC
* * *
10113923 AGCAAGGCTACCAGTAATAGTATCGC
1 AGCAAAGCTACCAGTAATAGTATTGT
* * *
10113949 AACAAAGCTTCCAGTAATAGTATTAT
1 AGCAAAGCTACCAGTAATAGTATTGT
* *
10113975 AGCAAAGCTGCCAGTAACAGTATATGT
1 AGCAAAGCTACCAGTAATAGTAT-TGT
* * *
10114002 GGCAAAGCCACCAGAAATAGTAT
1 AGCAAAGCTACCAGTAATAGTAT
10114025 ATGTGGCGAA
Statistics
Matches: 60, Mismatches: 15, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
26 40 0.67
27 20 0.33
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.22
Consensus pattern (26 bp):
AGCAAAGCTACCAGTAATAGTATTGT
Found at i:10114015 original size:27 final size:27
Alignment explanation
Indices: 10113959--10114040 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 27
10113949 AACAAAGCTT
* * **
10113959 CCAGTAATAGTAT-TATAGCAAAGCTG
1 CCAGTAATAGTATATGTGGCAAAGCCA
*
10113985 CCAGTAACAGTATATGTGGCAAAGCCA
1 CCAGTAATAGTATATGTGGCAAAGCCA
* *
10114012 CCAGAAATAGTATATGTGGCGAAGCCA
1 CCAGTAATAGTATATGTGGCAAAGCCA
10114039 CC
1 CC
10114041 GGTATAATAC
Statistics
Matches: 47, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
26 12 0.26
27 35 0.74
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.21
Consensus pattern (27 bp):
CCAGTAATAGTATATGTGGCAAAGCCA
Found at i:10117586 original size:25 final size:25
Alignment explanation
Indices: 10117539--10117586 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
10117529 ATATAACATG
* * * *
10117539 AAAATGACCGTTTTGCCCTTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
10117564 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
10117587 GTTTATGTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:10117653 original size:20 final size:20
Alignment explanation
Indices: 10117630--10117668 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
10117620 TAAACATGGT
10117630 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
10117650 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
10117669 TGTATTCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:10117750 original size:23 final size:23
Alignment explanation
Indices: 10117720--10117886 Score: 235
Period size: 23 Copynumber: 7.1 Consensus size: 23
10117710 AGGAAGTGAA
10117720 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
10117743 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
10117767 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* * *
10117790 AAAGGGCTTATGCCCTAGATATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
* * *
10117814 AAATGGCTTATGCCCAAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
10117838 AAAGGGCTTACGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
10117861 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
10117884 AAA
1 AAA
10117887 AGAGGCTAGG
Statistics
Matches: 129, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
23 67 0.52
24 62 0.48
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:10117775 original size:24 final size:23
Alignment explanation
Indices: 10117719--10117893 Score: 233
Period size: 24 Copynumber: 7.4 Consensus size: 23
10117709 GAGGAAGTGA
10117719 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
10117742 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
10117765 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
* * *
10117789 TAAAGGGCTTATGCCCTAGATAT
1 AAAAGGGCTTATGCCCCAGTTAT
* *
10117812 CAAAATGGCTTATGCCCAAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
10117836 CAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
10117860 TAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
10117884 AAAAGAGGCT
1 AAAAG-GGCT
10117894 AGGCCTCCAA
Statistics
Matches: 133, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
23 62 0.47
24 67 0.50
25 4 0.03
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:10117888 original size:47 final size:47
Alignment explanation
Indices: 10117719--10117886 Score: 257
Period size: 47 Copynumber: 3.6 Consensus size: 47
10117709 GAGGAAGTGA
10117719 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
* *
10117766 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCTAGATATC
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
* * * *
10117813 AAAATGGCTTATGCCCAAGTTATCAAAAGGGCTTACGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATC
*
10117860 TAAAGGGCTTATGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
10117887 AGAGGCTAGG
Statistics
Matches: 108, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
46 3 0.03
47 86 0.80
48 19 0.18
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
Found at i:10130869 original size:29 final size:29
Alignment explanation
Indices: 10130837--10130893 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
10130827 GGACTAGGCT
10130837 AGGTGAATCTCATA-ATTGTGGCTAGATTG
1 AGGTGAATCTCATATA-TGTGGCTAGATTG
10130866 AGGTGAATCTCATATATGTGGCTAGATT
1 AGGTGAATCTCATATATGTGGCTAGATT
10130894 TGGGCTAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 26 0.96
30 1 0.04
ACGTcount: A:0.28, C:0.11, G:0.26, T:0.35
Consensus pattern (29 bp):
AGGTGAATCTCATATATGTGGCTAGATTG
Found at i:10131056 original size:27 final size:27
Alignment explanation
Indices: 10131026--10131319 Score: 480
Period size: 27 Copynumber: 10.9 Consensus size: 27
10131016 TTTGTAAAAC
*
10131026 TACCGTTTTACCCTCGATTTATAGAAT
1 TACCATTTTACCCTCGATTTATAGAAT
* *
10131053 TACCGTTTTACCCTCTATTTATAGAAT
1 TACCATTTTACCCTCGATTTATAGAAT
* *
10131080 TACTATTTTACCCTCGATTTACAGAAT
1 TACCATTTTACCCTCGATTTATAGAAT
10131107 TACCATTTTACCCTCGATTTATAGAAT
1 TACCATTTTACCCTCGATTTATAGAAT
*
10131134 TATCATTTTACCCTCGATTTATAGAAT
1 TACCATTTTACCCTCGATTTATAGAAT
10131161 TACCATTTTACCCTCGATTTATAGAAT
1 TACCATTTTACCCTCGATTTATAGAAT
*
10131188 TAACATTTTACCCTCGATTTATAGAAT
1 TACCATTTTACCCTCGATTTATAGAAT
*
10131215 TACCATTTTACCCTCAATTTATAGAAT
1 TACCATTTTACCCTCGATTTATAGAAT
*
10131242 TACTATTTTACCCTCGATTTATAGAAT
1 TACCATTTTACCCTCGATTTATAGAAT
*
10131269 TACTATTTTACCCTCGATTTATAGAAT
1 TACCATTTTACCCTCGATTTATAGAAT
* *
10131296 TACCGTTTTACTCTCGATTTATAG
1 TACCATTTTACCCTCGATTTATAG
10131320 TCGATTTATA
Statistics
Matches: 250, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 250 1.00
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.43
Consensus pattern (27 bp):
TACCATTTTACCCTCGATTTATAGAAT
Found at i:10131089 original size:54 final size:54
Alignment explanation
Indices: 10131031--10131419 Score: 487
Period size: 54 Copynumber: 7.0 Consensus size: 54
10131021 AAAACTACCG
* *
10131031 TTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCTATTTATAGAATTACTA
1 TTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACTA
*
10131085 TTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTA-TCA
1 TTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACT-A
10131139 TTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTAAC-A
1 TTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATT-ACTA
*
10131193 TTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTATAGAATTACTA
1 TTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACTA
* **
10131247 TTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTATAGAATTACCG
1 TTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACTA
***
10131301 TTTTACTCTCGATTTATAGTCGATTTATAGAATTATTGTTTTACCCTCGATTTATAGAATTA-TC
1 TTTTAC-C-C---------TCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACT-
*
10131365 G
54 A
* ** * *
10131366 TTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTA
1 TTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACTA
10131420 AAATACTCTT
Statistics
Matches: 301, Mismatches: 17, Indels: 34
0.86 0.05 0.10
Matches are distributed among these distances:
53 3 0.01
54 244 0.81
55 3 0.01
56 1 0.00
63 1 0.00
64 1 0.00
65 48 0.16
ACGTcount: A:0.29, C:0.20, G:0.08, T:0.43
Consensus pattern (54 bp):
TTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACTA
Found at i:10131131 original size:81 final size:81
Alignment explanation
Indices: 10131026--10131419 Score: 527
Period size: 81 Copynumber: 4.7 Consensus size: 81
10131016 TTTGTAAAAC
* *
10131026 TACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCTATTTATAGAATTACTATTTTAC
1 TACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTAC
*
10131091 CCTCGATTTACAGAAT
66 CCTCGATTTATAGAAT
* * *
10131107 TACCATTTTACCCTCGATTTATAGAATTATCATTTTACCCTCGATTTATAGAATTACCATTTTAC
1 TACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTAC
10131172 CCTCGATTTATAGAAT
66 CCTCGATTTATAGAAT
* * *
10131188 TAACATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTATAGAATTACTATTTTAC
1 TACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTAC
10131253 CCTCGATTTATAGAAT
66 CCTCGATTTATAGAAT
*
10131269 TACTATTTTACCCTCGATTTATAGAATTACCGTTTTACTCTCGATTTATAGTCGATTTATAGAAT
1 TACCATTTTACCCTCGATTTATAGAATTACCGTTTTAC-C-C---------TCGATTTATAGAAT
* *
10131334 TATTGTTTTACCCTCGATTTATAGAAT
55 TACTATTTTACCCTCGATTTATAGAAT
* * * * * *
10131361 TATCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTA
1 TACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACTA
10131420 AAATACTCTT
Statistics
Matches: 277, Mismatches: 25, Indels: 22
0.85 0.08 0.07
Matches are distributed among these distances:
81 202 0.73
82 1 0.00
83 1 0.00
90 1 0.00
91 1 0.00
92 71 0.26
ACGTcount: A:0.29, C:0.20, G:0.08, T:0.43
Consensus pattern (81 bp):
TACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTAC
CCTCGATTTATAGAAT
Found at i:10131324 original size:38 final size:38
Alignment explanation
Indices: 10131282--10131357 Score: 125
Period size: 38 Copynumber: 2.0 Consensus size: 38
10131272 TATTTTACCC
*
10131282 TCGATTTATAGAATTACCGTTTTACTCTCGATTTATAG
1 TCGATTTATAGAATTACCGTTTTACCCTCGATTTATAG
**
10131320 TCGATTTATAGAATTATTGTTTTACCCTCGATTTATAG
1 TCGATTTATAGAATTACCGTTTTACCCTCGATTTATAG
10131358 AATTATCGTT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.26, C:0.14, G:0.13, T:0.46
Consensus pattern (38 bp):
TCGATTTATAGAATTACCGTTTTACCCTCGATTTATAG
Found at i:10131331 original size:65 final size:65
Alignment explanation
Indices: 10131255--10131381 Score: 218
Period size: 65 Copynumber: 2.0 Consensus size: 65
10131245 TATTTTACCC
*
10131255 TCGATTTATAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACTCTCGATTTATAG
1 TCGATTTATAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAG
* * *
10131320 TCGATTTATAGAATTATTGTTTTACCCTCGATTTATAGAATTATCGTTTTACCCTCGATTTA
1 TCGATTTATAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTA
10131382 CAGAATTACT
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
65 58 1.00
ACGTcount: A:0.27, C:0.17, G:0.11, T:0.46
Consensus pattern (65 bp):
TCGATTTATAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAG
Found at i:10131343 original size:27 final size:27
Alignment explanation
Indices: 10131320--10131408 Score: 151
Period size: 27 Copynumber: 3.3 Consensus size: 27
10131310 CGATTTATAG
10131320 TCGATTTATAGAATTATTGTTTTACCC
1 TCGATTTATAGAATTATTGTTTTACCC
*
10131347 TCGATTTATAGAATTATCGTTTTACCC
1 TCGATTTATAGAATTATTGTTTTACCC
* *
10131374 TCGATTTACAGAATTACTGTTTTACCC
1 TCGATTTATAGAATTATTGTTTTACCC
10131401 TCGATTTA
1 TCGATTTA
10131409 CAAAATTACT
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.26, C:0.18, G:0.11, T:0.45
Consensus pattern (27 bp):
TCGATTTATAGAATTATTGTTTTACCC
Found at i:10131388 original size:92 final size:92
Alignment explanation
Indices: 10131231--10131408 Score: 286
Period size: 92 Copynumber: 1.9 Consensus size: 92
10131221 TTTACCCTCA
*
10131231 ATTTATAGAATTACTATTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTATAGAAT
1 ATTTATAGAATTACTATTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAAT
*
10131296 TACCGTTTTACTCTCGATTTATAGTCG
66 TACCGTTTTACCCTCGATTTATAGTCG
* * *
10131323 ATTTATAGAATTATTGTTTTACCCTCGATTTATAGAATTA-TCGTTTTACCCTCGATTTACAGAA
1 ATTTATAGAATTACTATTTTACCCTCGATTTATAGAATTACT-ATTTTACCCTCGATTTACAGAA
*
10131387 TTACTGTTTTACCCTCGATTTA
65 TTACCGTTTTACCCTCGATTTA
10131409 CAAAATTACT
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
91 1 0.01
92 78 0.99
ACGTcount: A:0.28, C:0.17, G:0.10, T:0.45
Consensus pattern (92 bp):
ATTTATAGAATTACTATTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAAT
TACCGTTTTACCCTCGATTTATAGTCG
Found at i:10131409 original size:27 final size:27
Alignment explanation
Indices: 10131320--10131418 Score: 146
Period size: 27 Copynumber: 3.7 Consensus size: 27
10131310 CGATTTATAG
* *
10131320 TCGATTTATAGAATTATTGTTTTACCC
1 TCGATTTACAGAATTACTGTTTTACCC
*
10131347 TCGATTTATAGAATTA-TCGTTTTACCC
1 TCGATTTACAGAATTACT-GTTTTACCC
10131374 TCGATTTACAGAATTACTGTTTTACCC
1 TCGATTTACAGAATTACTGTTTTACCC
*
10131401 TCGATTTACAAAATTACT
1 TCGATTTACAGAATTACT
10131419 AAAATACTCT
Statistics
Matches: 68, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
26 1 0.01
27 66 0.97
28 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.10, T:0.43
Consensus pattern (27 bp):
TCGATTTACAGAATTACTGTTTTACCC
Found at i:10131416 original size:119 final size:119
Alignment explanation
Indices: 10131201--10131417 Score: 337
Period size: 119 Copynumber: 1.8 Consensus size: 119
10131191 CATTTTACCC
*
10131201 TCGATTTATAGAATTACCATTTTACCCTCAATTTATAGAATTACTATTTTACCCTCGATTTATAG
1 TCGATTTATAGAATTACCATTTTACCCTCAATTTATAGAATTACTATTTTACCCTCGATTTACAG
* *
10131266 AATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACTCTCGATTTATAG
66 AATTACTATTTTACCCTCGATTTACAAAATTACCGTTTTACTCTCGATTTATAG
*** * *
10131320 TCGATTTATAGAATTATTGTTTTACCCTCGATTTATAGAATTA-TCGTTTTACCCTCGATTTACA
1 TCGATTTATAGAATTACCATTTTACCCTCAATTTATAGAATTACT-ATTTTACCCTCGATTTACA
*
10131384 GAATTACTGTTTTACCCTCGATTTACAAAATTAC
65 GAATTACTATTTTACCCTCGATTTACAAAATTAC
10131418 TAAAATACTC
Statistics
Matches: 88, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
118 1 0.01
119 87 0.99
ACGTcount: A:0.29, C:0.18, G:0.09, T:0.43
Consensus pattern (119 bp):
TCGATTTATAGAATTACCATTTTACCCTCAATTTATAGAATTACTATTTTACCCTCGATTTACAG
AATTACTATTTTACCCTCGATTTACAAAATTACCGTTTTACTCTCGATTTATAG
Found at i:10131458 original size:146 final size:146
Alignment explanation
Indices: 10131174--10131460 Score: 367
Period size: 146 Copynumber: 2.0 Consensus size: 146
10131164 CATTTTACCC
*
10131174 TCGATTTATAGAATTAACATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTATAG
1 TCGATTTATAGAATTAACATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAG
* * *** * * ****
10131239 AATTACTATTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTT
66 AATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCAAAA
*
10131304 TACTCTCGATTTATAG
131 TACCCTCGATTTATAG
*** * * *
10131320 TCGATTTATAGAATTATTGTTTTACCCTCGATTTATAGAATTATCGTTTTACCCTCGATTTACAG
1 TCGATTTATAGAATTAACATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAG
* * * *
10131385 AATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACTCTTGGTTTACAAAATTACCAAAA
66 AATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCAAAA
10131450 TACCCTCGATT
131 TACCCTCGATT
10131461 AGTAAAATTA
Statistics
Matches: 118, Mismatches: 23, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
146 118 1.00
ACGTcount: A:0.31, C:0.19, G:0.09, T:0.41
Consensus pattern (146 bp):
TCGATTTATAGAATTAACATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAG
AATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCAAAA
TACCCTCGATTTATAG
Found at i:10131571 original size:27 final size:27
Alignment explanation
Indices: 10131396--10131645 Score: 200
Period size: 27 Copynumber: 9.3 Consensus size: 27
10131386 ATTACTGTTT
* ** *
10131396 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* * **
10131423 TACTCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* *
10131450 TACCCTCGATTAGTAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* * *
10131477 TACCCCTGGTTTGTAAAATTACTAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
*
10131504 TACCCCT-AGTTTGTAAAATTACCAAAA
1 TACCCTTGA-TTTGTAAAATTACCAAAA
* **
10131531 TACCCCTGGCTTGTAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* **
10131558 TACCCTTGATTTGTGAAATTTTCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* ** * *
10131585 TACTCTCAATTTGTAAAA-TATCGAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
** *
10131611 TACCCCTTG-TAGGATAGAATTACCAAAA
1 TA-CCCTTGATTTG-TAAAATTACCAAAA
10131639 TACCCTT
1 TACCCTT
10131646 ATAGGGTAGA
Statistics
Matches: 179, Mismatches: 39, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
26 10 0.06
27 161 0.90
28 8 0.04
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
TACCCTTGATTTGTAAAATTACCAAAA
Found at i:10131571 original size:81 final size:80
Alignment explanation
Indices: 10131396--10131645 Score: 229
Period size: 81 Copynumber: 3.1 Consensus size: 80
10131386 ATTACTGTTT
* ** * * * **
10131396 TACCCTCGATTTACAAAATTACTAAAATACTCTTGGTTTACAAAATTACCAAAATA-CCCTCGAT
1 TACCCTTGATTTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTCG-T
10131460 TAGTAAAATTACCAAAA
65 T-GTAAAATTACCAAAA
* * *
10131477 TACCCCTGGTTTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGCT
1 TACCCTTGATTTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTCG-T
10131542 TGTAAAATTACCAAAA
65 TGTAAAATTACCAAAA
* * * * * * *
10131558 TACCCTTGATTTGTGAAATT-TTCAAAATA-CTCTCAATTTGTAAAA-TATCGAAATACCCCTTG
1 TACCCTTGATTTGTAAAATTACT-AAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCCTCG
* *
10131620 TAGGATAGAATTACCAAAA
64 T-TG-TAAAATTACCAAAA
10131639 TACCCTT
1 TACCCTT
10131646 ATAGGGTAGA
Statistics
Matches: 141, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
79 1 0.01
80 19 0.13
81 114 0.81
82 7 0.05
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (80 bp):
TACCCTTGATTTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTCGTT
GTAAAATTACCAAAA
Found at i:10131603 original size:54 final size:54
Alignment explanation
Indices: 10131396--10131587 Score: 224
Period size: 54 Copynumber: 3.6 Consensus size: 54
10131386 ATTACTGTTT
* ** * * * **
10131396 TACCCTCGATTTACAAAATTACTAAAATACTCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAA
* * *
10131450 TACCCTCGATTAGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 TACCCTTGATTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAA
* *
10131504 TACCCCT-AGTTTGTAAAATTACCAAAATACCCCTGGCTTGTAAAATTACCAAAA
1 TACCCTTGA-TTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAA
* **
10131558 TACCCTTGATTTGTGAAATTTTCAAAATAC
1 TACCCTTGATTTGTAAAATTACCAAAATAC
10131588 TCTCAATTTG
Statistics
Matches: 118, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
53 1 0.01
54 116 0.98
55 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (54 bp):
TACCCTTGATTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAA
Found at i:10131650 original size:27 final size:27
Alignment explanation
Indices: 10131606--10131835 Score: 273
Period size: 27 Copynumber: 8.5 Consensus size: 27
10131596 TGTAAAATAT
*
10131606 CGAAATACCCCTTGTAGGATAGAATTAC
1 CGAAATA-CCCTTGTAGGGTAGAATTAC
* * *
10131634 CAAAATACCCTTATAGGGTAGAATTAT
1 CGAAATACCCTTGTAGGGTAGAATTAC
* *
10131661 CGAAATACCCCTATAGGGTAGAATTAC
1 CGAAATACCCTTGTAGGGTAGAATTAC
*
10131688 TGAAATAACCC-TGTAGGGTAGAATTAC
1 CGAAAT-ACCCTTGTAGGGTAGAATTAC
* * * * *
10131715 CGAAATACCCCTGTTGGGTAAAAATAT
1 CGAAATACCCTTGTAGGGTAGAATTAC
* * *
10131742 TGAAATACCCCTGTAGGGTAGAATTAT
1 CGAAATACCCTTGTAGGGTAGAATTAC
*
10131769 CGAAATACCCTTGTAGGGTAGAAGTAC
1 CGAAATACCCTTGTAGGGTAGAATTAC
10131796 CGAAATACCCTTGTAGGGTAGAATTAC
1 CGAAATACCCTTGTAGGGTAGAATTAC
* *
10131823 CGAGATATCCTTG
1 CGAAATACCCTTG
10131836 GGTAAAATTA
Statistics
Matches: 175, Mismatches: 25, Indels: 5
0.85 0.12 0.02
Matches are distributed among these distances:
26 4 0.02
27 161 0.92
28 10 0.06
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
CGAAATACCCTTGTAGGGTAGAATTAC
Found at i:10132078 original size:25 final size:25
Alignment explanation
Indices: 10132050--10132119 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
10132040 AGGAAGTGCT
*
10132050 AAAAGGG-TTATGCCCCAGTTTACCG
1 AAAAGGGCTT-TGCCCCAGTTTACCA
*
10132075 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
10132100 AAAAGGGCTTTACTCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
10132120 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 38 0.95
26 2 0.05
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:10137382 original size:42 final size:41
Alignment explanation
Indices: 10137324--10137432 Score: 105
Period size: 43 Copynumber: 2.6 Consensus size: 41
10137314 TTGATGGCTC
* * * *
10137324 TGTCCCAGATAGGGTCTTACACGAAA-TCAGATACGATG-TTG
1 TGTCCCAGACACGGTCTTACACGAAACTCA-AT-CGAGGCCTG
* *
10137365 ATGTCCCAGACATGGTCTTATACGTAAATCTCAATCGAGGCCTG
1 -TGTCCCAGACACGGTCTTACACG-AAA-CTCAATCGAGGCCTG
10137409 TGTCCCAGACACGGTCTTACACGA
1 TGTCCCAGACACGGTCTTACACGA
10137433 TGTCTCAGAC
Statistics
Matches: 56, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
42 21 0.38
43 28 0.50
44 4 0.07
45 3 0.05
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.26
Consensus pattern (41 bp):
TGTCCCAGACACGGTCTTACACGAAACTCAATCGAGGCCTG
Found at i:10144735 original size:85 final size:84
Alignment explanation
Indices: 10144619--10144822 Score: 293
Period size: 85 Copynumber: 2.4 Consensus size: 84
10144609 GTAATTCAAT
* * * * *
10144619 ATCGATGCCTCTGTCCCAGACAGGGTTTTACATGAAATCAGATACGATGTCGATGTCCCAGACAT
1 ATCGAAGCCTGTGTCCCAGACACGGTCTTACATGAAATCAGATACGATGCCGATGTCCCA-ACAT
*
10144684 GGTCTTATACGTATATCTCA
65 GGTCTTATACGTAAATCTCA
* *
10144704 ATCGAAGCCTGTGTCCCAAACACGGTCTTACACGAAATCAGATACGATGCCGATGTCCCAACATG
1 ATCGAAGCCTGTGTCCCAGACACGGTCTTACATGAAATCAGATACGATGCCGATGTCCCAACATG
*
10144769 GTCTTATACGTAAATCTCG
66 GTCTTATACGTAAATCTCA
*
10144788 ATC-AAGGCCTGTGTCCTAGACACGGTCTTACATGA
1 ATCGAA-GCCTGTGTCCCAGACACGGTCTTACATGA
10144823 TGTCTCTGAC
Statistics
Matches: 106, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
83 2 0.02
84 51 0.48
85 53 0.50
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.26
Consensus pattern (84 bp):
ATCGAAGCCTGTGTCCCAGACACGGTCTTACATGAAATCAGATACGATGCCGATGTCCCAACATG
GTCTTATACGTAAATCTCA
Found at i:10144764 original size:42 final size:42
Alignment explanation
Indices: 10144598--10144784 Score: 150
Period size: 42 Copynumber: 4.4 Consensus size: 42
10144588 GTCCCGAATG
* * ** *
10144598 TGGTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAGACA
1 TGGTCTTACACGTAAATCAATA-CGATGCCGATGTCCCAAACA
* * * * *
10144641 GGGTTTTACATG-AAATCAGATACGATGTCGATGTCCCAGACA
1 TGGTCTTACACGTAAATCA-ATACGATGCCGATGTCCCAAACA
* * *
10144683 TGGTCTTATACGTATATCTCAAT-CGAAGCCTG-TGTCCCAAACA
1 TGGTCTTACACGTA-A-ATCAATACGATGCC-GATGTCCCAAACA
*
10144726 CGGTCTTACACG-AAATCAGATACGATGCCGATGTCCC-AACA
1 TGGTCTTACACGTAAATCA-ATACGATGCCGATGTCCCAAACA
*
10144767 TGGTCTTATACGTAAATC
1 TGGTCTTACACGTAAATC
10144785 TCGATCAAGG
Statistics
Matches: 115, Mismatches: 20, Indels: 19
0.75 0.13 0.12
Matches are distributed among these distances:
40 3 0.03
41 18 0.16
42 48 0.42
43 39 0.34
44 4 0.03
45 3 0.03
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (42 bp):
TGGTCTTACACGTAAATCAATACGATGCCGATGTCCCAAACA
Found at i:10144803 original size:42 final size:42
Alignment explanation
Indices: 10144672--10144817 Score: 138
Period size: 43 Copynumber: 3.5 Consensus size: 42
10144662 ACGATGTCGA
* * *
10144672 TGTCCCAGACATGGTCTTATACGTATATCTCAATCGAAGCCTG
1 TGTCCCAGACACGGTCTTATACGTAAATCTCGATC-AAGCCTG
* * * *
10144715 TGTCCCAAACACGGTCTTACACG-AAATC-AGATACGATGCC-G
1 TGTCCCAGACACGGTCTTATACGTAAATCTCGAT-C-AAGCCTG
*
10144756 ATGTCCCA-ACATGGTCTTATACGTAAATCTCGATCAAGGCCTG
1 -TGTCCCAGACACGGTCTTATACGTAAATCTCGATCAA-GCCTG
*
10144799 TGTCCTAGACACGGTCTTA
1 TGTCCCAGACACGGTCTTA
10144818 CATGATGTCT
Statistics
Matches: 83, Mismatches: 13, Indels: 14
0.75 0.12 0.13
Matches are distributed among these distances:
41 17 0.20
42 32 0.39
43 34 0.41
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (42 bp):
TGTCCCAGACACGGTCTTATACGTAAATCTCGATCAAGCCTG
Found at i:10147724 original size:79 final size:78
Alignment explanation
Indices: 10147613--10147837 Score: 290
Period size: 79 Copynumber: 2.8 Consensus size: 78
10147603 GCTACTCGTT
* * *
10147613 CAAATGCTTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGATATAGTAACTCGCACAA-TGCCTTCGGGACTTAACCCGG
10147678 ATTTAGTAACTCGCA
64 ATTTAGTAACTCGCA
*
10147693 CAAATGCCTTCGGGCTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGATA-TAGTAACTCGCAC-AATGCCTTCGGGACTTAACCCGG
10147757 ATTTAGTAACTCGCA
64 ATTTAGTAACTCGCA
* * * * * * *
10147772 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGG-GCTTAGCCCGGATATAGTAAC-TCGCACAATGCCTTCGGGACTTAACCCGG
10147837 A
64 A
10147838 CATCATTCAA
Statistics
Matches: 128, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 70 0.55
80 51 0.40
81 6 0.05
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGAT
TTAGTAACTCGCA
Found at i:10147797 original size:119 final size:120
Alignment explanation
Indices: 10147613--10147837 Score: 305
Period size: 119 Copynumber: 1.9 Consensus size: 120
10147603 GCTACTCGTT
* * *
10147613 CAAATGCTTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
10147678 ATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* **
10147732 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAACCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* *
10147795 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
10147838 CATCATTCAA
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
118 3 0.03
119 68 0.74
120 21 0.23
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:10147837 original size:40 final size:40
Alignment explanation
Indices: 10147594--10147837 Score: 282
Period size: 40 Copynumber: 6.1 Consensus size: 40
10147584 CAGAATTTAA
** * *
10147594 CCGGATATAGCT-ACTCGTTCAAATGCTTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
10147634 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
10147674 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
10147713 CCGGA-ATTAGTATCTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
10147753 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
10147793 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
10147833 CCGGA
1 CCGGA
10147838 CATCATTCAA
Statistics
Matches: 174, Mismatches: 23, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
39 39 0.22
40 124 0.71
41 11 0.06
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:10159139 original size:39 final size:39
Alignment explanation
Indices: 10159085--10159179 Score: 190
Period size: 39 Copynumber: 2.4 Consensus size: 39
10159075 CAGAAGCTTT
10159085 GGCACTAAGTGTGCGATTTAACTAGCTTCGGCTACTTGA
1 GGCACTAAGTGTGCGATTTAACTAGCTTCGGCTACTTGA
10159124 GGCACTAAGTGTGCGATTTAACTAGCTTCGGCTACTTGA
1 GGCACTAAGTGTGCGATTTAACTAGCTTCGGCTACTTGA
10159163 GGCACTAAGTGTGCGAT
1 GGCACTAAGTGTGCGAT
10159180 ACCGACTTAG
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 56 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (39 bp):
GGCACTAAGTGTGCGATTTAACTAGCTTCGGCTACTTGA
Found at i:10163337 original size:16 final size:16
Alignment explanation
Indices: 10163318--10163348 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
10163308 CTTCTTCACT
10163318 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
10163334 TACTTACTTACTTAA
1 TACTCACTTACTTAA
10163349 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:10163354 original size:20 final size:20
Alignment explanation
Indices: 10163315--10163354 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
10163305 AAACTTCTTC
* *
10163315 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
10163335 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
10163355 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:10163614 original size:49 final size:52
Alignment explanation
Indices: 10163538--10163686 Score: 178
Period size: 49 Copynumber: 2.9 Consensus size: 52
10163528 ATACGCGGGT
* *
10163538 ACCTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTT-TT-GAA
1 ACCTTACCATTGCCATGACTTGACATGGTCTTACATGGTATCCTTCTTAGAA
* * *
10163588 A-CTTACCATTACCATGTCTTGACATGGTCTTACATGGTTTCCTTGCCTTAGAA
1 ACCTTACCATTGCCATGACTTGACATGGTCTTACATGGTATCCTT--CTTAGAA
* * *
10163641 ACCTCACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 ACCTTACC-ATTGCCATGACTTGACATGGTCTTACATGGTATCCTT
10163687 AAACCCTAAT
Statistics
Matches: 83, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
49 38 0.46
50 1 0.01
52 2 0.02
53 4 0.05
54 5 0.06
55 33 0.40
ACGTcount: A:0.21, C:0.26, G:0.17, T:0.36
Consensus pattern (52 bp):
ACCTTACCATTGCCATGACTTGACATGGTCTTACATGGTATCCTTCTTAGAA
Found at i:10166330 original size:40 final size:40
Alignment explanation
Indices: 10166118--10166323 Score: 317
Period size: 40 Copynumber: 5.2 Consensus size: 40
10166108 AACCCAAGTA
* *
10166118 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
10166157 CCTTCGGGACTTAGCCCGGATATAATCACTAGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
10166197 CCTTTGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
10166237 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
**
10166277 CCTTCAAGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
10166317 CCTTCGG
1 CCTTCGG
10166324 ATCTTAGTCC
Statistics
Matches: 151, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 13 0.09
40 137 0.91
41 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:10167720 original size:13 final size:13
Alignment explanation
Indices: 10167702--10167727 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
10167692 ATTTTTATTT
10167702 TTAACATAAAATA
1 TTAACATAAAATA
10167715 TTAACATAAAATA
1 TTAACATAAAATA
10167728 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:10193975 original size:40 final size:39
Alignment explanation
Indices: 10193886--10194041 Score: 174
Period size: 39 Copynumber: 3.9 Consensus size: 39
10193876 TTGAATGATG
* *
10193886 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
10193925 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
10193965 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
10194004 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA
10194042 TCTTACTAAG
Statistics
Matches: 100, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
39 53 0.53
40 39 0.39
41 8 0.08
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:10194021 original size:79 final size:79
Alignment explanation
Indices: 10193886--10194041 Score: 194
Period size: 79 Copynumber: 2.0 Consensus size: 79
10193876 TTGAATGATG
*
10193886 TCCGGGCTAAGTCCCGAAGGCTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCAATTG
10193951 TGCGAGATACTAAT
66 TGCGAGATACTAAT
* * **
10193965 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGCA
*
10194026 ATTGTGCGAGTTACTA
62 ATTGTGCGAGATACTA
10194042 TCTTACTAAG
Statistics
Matches: 67, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
78 10 0.15
79 49 0.73
80 8 0.12
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCAATTG
TGCGAGATACTAAT
Found at i:10196822 original size:40 final size:40
Alignment explanation
Indices: 10196778--10196856 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
10196768 CAAGGTAGAT
10196778 TGTAAAACACTAGAGTTGAAATATGAAAATGGTGAAATTC
1 TGTAAAACACTAGAGTTGAAATATGAAAATGGTGAAATTC
10196818 TGTAAAACACTAGAGTTGAAATATGAAAATGGTGAAATT
1 TGTAAAACACTAGAGTTGAAATATGAAAATGGTGAAATT
10196857 TTGTGGGTTG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.46, C:0.06, G:0.20, T:0.28
Consensus pattern (40 bp):
TGTAAAACACTAGAGTTGAAATATGAAAATGGTGAAATTC
Found at i:10198683 original size:27 final size:27
Alignment explanation
Indices: 10198643--10198760 Score: 139
Period size: 27 Copynumber: 4.4 Consensus size: 27
10198633 TTTTACTCTC
** * *
10198643 CAGGGGTAAATCGGTAGTCCTACCCTA
1 CAGGGGTATTTCGGTAATTCTACCCTA
*
10198670 CAGGGGTATTTCGGTAATTCTACCTTA
1 CAGGGGTATTTCGGTAATTCTACCCTA
** *
10198697 CAGAAGTATTTCAGTAATTCTACCCTA
1 CAGGGGTATTTCGGTAATTCTACCCTA
*
10198724 CA-GGGTATTTCGGTAATTCTACCTTA
1 CAGGGGTATTTCGGTAATTCTACCCTA
*
10198750 CACGGGTATTT
1 CAGGGGTATTT
10198761 TAGTAAATTT
Statistics
Matches: 77, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
26 22 0.29
27 55 0.71
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.33
Consensus pattern (27 bp):
CAGGGGTATTTCGGTAATTCTACCCTA
Found at i:10201699 original size:27 final size:27
Alignment explanation
Indices: 10201643--10201714 Score: 65
Period size: 27 Copynumber: 2.7 Consensus size: 27
10201633 ATAGTCATTT
** *
10201643 TACCCT-CTAGGGGTAAATCGGTAGTCC
1 TACCCTAC-AGGGGTATTTCGGTAATCC
*
10201670 TACCCTACAGGGGTATTTCGGTAATTC
1 TACCCTACAGGGGTATTTCGGTAATCC
* * *
10201697 TACCTTAGAGCGGTATTT
1 TACCCTACAGGGGTATTT
10201715 TATTAATTTT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
27 36 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (27 bp):
TACCCTACAGGGGTATTTCGGTAATCC
Found at i:10204225 original size:27 final size:27
Alignment explanation
Indices: 10204185--10204303 Score: 121
Period size: 27 Copynumber: 4.4 Consensus size: 27
10204175 TTTTACTCTC
** * *
10204185 CAGGGGTAAATCGGTAGTCCTACCCTA
1 CAGGGGTATTTCGGTAATTCTACCCTA
*
10204212 CAGGGGTATTTCGGTAATTCTACCTTA
1 CAGGGGTATTTCGGTAATTCTACCCTA
* * * **
10204239 CAAGAGTATGTCAATAATTCTACCCTA
1 CAGGGGTATTTCGGTAATTCTACCCTA
* *
10204266 CAGGGGTATTTCGGTAATTCTAACTTA
1 CAGGGGTATTTCGGTAATTCTACCCTA
*
10204293 GAGGGGTATTT
1 CAGGGGTATTT
10204304 TATTAATTTT
Statistics
Matches: 73, Mismatches: 19, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 73 1.00
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (27 bp):
CAGGGGTATTTCGGTAATTCTACCCTA
Found at i:10206657 original size:40 final size:40
Alignment explanation
Indices: 10206585--10206795 Score: 239
Period size: 40 Copynumber: 5.3 Consensus size: 40
10206575 TCTTCGGAAT
** * *
10206585 TTAG-CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* * * * *
10206623 TTAGCCTGGATATGGTCACTAGCATAAATGCCTTCTGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* *
10206663 TTAGCTCGGATATAGTCGCTAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* *
10206703 TTAGCCCGGATATAG-CAACTCGCACAAATGCCTTCGGATC
1 TTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTC
* * * *
10206743 TTAGTCCGGATATAGTCACTAGCATAAAAGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
10206783 TTAGCCCGGATAT
1 TTAGCCCGGATAT
10206796 CATTCGAATA
Statistics
Matches: 142, Mismatches: 27, Indels: 6
0.81 0.15 0.03
Matches are distributed among these distances:
38 4 0.03
39 15 0.11
40 122 0.86
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
Found at i:10210085 original size:27 final size:26
Alignment explanation
Indices: 10210037--10210088 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
10210027 GCGAGGCTGC
*
10210037 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
10210063 CAGATATTTGTGGCGAGGCCACCAGA
1 CAGATA-TTGTGACGAAGCCACCAGA
10210089 TTACAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 6 0.27
27 16 0.73
ACGTcount: A:0.33, C:0.21, G:0.27, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:10210105 original size:67 final size:69
Alignment explanation
Indices: 10209968--10210107 Score: 185
Period size: 67 Copynumber: 2.1 Consensus size: 69
10209958 TAACCAGATA
* * * * *
10209968 CAGATATTGTGGCTAGGCCACCAGAGCAGATATATATATGGCAAAGCCACCAGATTGCAGCGAGG
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATATATGGCAAAGCCACCAGATTACAGCGAGG
10210033 CTGC
66 CTGC
* * * *
10210037 CAGATATTGTGACGAAGTCACCAGAACAGATAT-T-TGTGGCGAGGCCACCAGATTACAGCGAGG
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATATATGGCAAAGCCACCAGATTACAGCGAGG
10210100 CTGC
66 CTGC
10210104 CAGA
1 CAGA
10210108 ACGCTTCCTC
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
67 33 0.53
68 1 0.02
69 28 0.45
ACGTcount: A:0.31, C:0.23, G:0.28, T:0.19
Consensus pattern (69 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATATATGGCAAAGCCACCAGATTACAGCGAGG
CTGC
Found at i:10210378 original size:27 final size:27
Alignment explanation
Indices: 10210338--10210455 Score: 157
Period size: 27 Copynumber: 4.4 Consensus size: 27
10210328 TTTTACTCTC
** * *
10210338 CAGGGGTAAATCGGTAGTCCTACCCTA
1 CAGGGGTATTTCGGTAATTCTACCCTA
*
10210365 CAGGGGTATTTCGGTAATTCTACCTTA
1 CAGGGGTATTTCGGTAATTCTACCCTA
* *
10210392 CAGGAGTATTTCAGTAATTCTACCCTA
1 CAGGGGTATTTCGGTAATTCTACCCTA
*
10210419 CAGGGGTATTTCGGTAATTCTACCTTA
1 CAGGGGTATTTCGGTAATTCTACCCTA
10210446 CA-GGGTATTT
1 CAGGGGTATTT
10210456 TAGTAATTTT
Statistics
Matches: 80, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 8 0.10
27 72 0.90
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (27 bp):
CAGGGGTATTTCGGTAATTCTACCCTA
Found at i:10210490 original size:53 final size:54
Alignment explanation
Indices: 10210357--10210463 Score: 198
Period size: 54 Copynumber: 2.0 Consensus size: 54
10210347 ATCGGTAGTC
10210357 CTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGAGTATTTCAGTAATT
1 CTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGAGTATTTCAGTAATT
*
10210411 CTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGG-GTATTTTAGTAATT
1 CTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGAGTATTTCAGTAATT
10210464 TTTCTAATTG
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
53 13 0.25
54 39 0.75
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (54 bp):
CTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGAGTATTTCAGTAATT
Found at i:10212319 original size:42 final size:42
Alignment explanation
Indices: 10212272--10212363 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
10212262 TGGCCCTTAG
* ** *
10212272 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
10212314 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
10212356 GCCCATTT
1 GCCCATTT
10212364 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:10212562 original size:25 final size:26
Alignment explanation
Indices: 10212511--10212580 Score: 90
Period size: 25 Copynumber: 2.8 Consensus size: 26
10212501 CTCTTTTAAT
*
10212511 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAGAGCCCTTTTCTGATA
*
10212536 AACTGGGGCAGAGCCCTTTTC-GGTA
1 AACTGGGGCAGAGCCCTTTTCTGATA
* *
10212561 AACTGAGGTAGAGCCCTTTT
1 AACTGGGGCAGAGCCCTTTT
10212581 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 36 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (26 bp):
AACTGGGGCAGAGCCCTTTTCTGATA
Found at i:10213454 original size:27 final size:27
Alignment explanation
Indices: 10213393--10213457 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
10213383 GGCGTATTCA
*
10213393 TCATTTTACCATACAAGGGTATTACGG
1 TCATTTTACCTTACAAGGGTATTACGG
* *
10213420 TCACTTTACCTTACAGGGGCT-TTACGG
1 TCATTTTACCTTACAAGGG-TATTACGG
*
10213447 TCTTTTTACCT
1 TCATTTTACCT
10213458 ATTAGGGTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.38
Consensus pattern (27 bp):
TCATTTTACCTTACAAGGGTATTACGG
Found at i:10213612 original size:27 final size:27
Alignment explanation
Indices: 10213486--10213818 Score: 158
Period size: 27 Copynumber: 12.3 Consensus size: 27
10213476 TTTCATCCTA
* * * *
10213486 CAAGGGTGTTTTGGTAAATCTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
*** * *
10213513 CAAGGGTATTTCAATAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
* * * *
10213540 CAATGGTATTCCT-ATAATTTTAAAAAAGT
1 CAAGGGTATT-TTGGTAATTTT-ATAAA-T
*
10213569 CAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTATAAAT
*
10213596 CAAGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
** * * * *
10213623 TGAGGGTATTTCGATAATTTCA-AAAA
1 CAAGGGTATTTTGGTAATTTTATAAAT
* **
10213649 CCAGTGGTATTTTGGTAATTTTACGAA-
1 CAAG-GGTATTTTGGTAATTTTATAAAT
* *
10213676 CTAGGGGTATTTTGGTAATTTTACAAAT
1 C-AAGGGTATTTTGGTAATTTTATAAAT
* * *
10213704 TAGGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTATAAAT
* ** * *
10213730 CTAGGGGTATTTCAGTAATTTCA-CAAT
1 C-AAGGGTATTTTGGTAATTTTATAAAT
* ***
10213757 CGAGGGTAAAATGGTAATTTTATAAA-
1 CAAGGGTATTTTGGTAATTTTATAAAT
* ***
10213783 CTAGGGGTAAAATGGTAATTTTATAAAT
1 C-AAGGGTATTTTGGTAATTTTATAAAT
*
10213811 CGAGGGTA
1 CAAGGGTA
10213819 AAACGATAAT
Statistics
Matches: 238, Mismatches: 54, Indels: 28
0.74 0.17 0.09
Matches are distributed among these distances:
26 22 0.09
27 189 0.79
28 10 0.04
29 17 0.07
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAT
Found at i:10213658 original size:54 final size:54
Alignment explanation
Indices: 10213599--10213791 Score: 203
Period size: 54 Copynumber: 3.6 Consensus size: 54
10213589 TGTAAATCAA
*
10213599 GGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGATAATTTCAAAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCGATAATTTCAAAAACCAG
* * * * * * **
10213653 TGGTATTTTGGTAATTTTACGAACTAGGGGTATTTTGGTAATTTTACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGATAATTTCAAAAACCAG
* * *
10213707 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTC-AGTAATTTCACAATCGA-
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGA-TAATTTCAAAAACCAG
*** *
10213760 GGGTAAAATGGTAATTTTATAAACTAGGGGTA
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTA
10213792 AAATGGTAAT
Statistics
Matches: 116, Mismatches: 21, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
53 28 0.24
54 86 0.74
55 2 0.02
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.38
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGATAATTTCAAAAACCAG
Found at i:10213689 original size:81 final size:81
Alignment explanation
Indices: 10213599--10213750 Score: 216
Period size: 81 Copynumber: 1.9 Consensus size: 81
10213589 TGTAAATCAA
* **
10213599 GGGTATTTTGGTAATTTTACAAATT-GAGGGTATTTCGATAATTTCAAAAACCAGTGGTATTTTG
1 GGGTATTTTGGTAATTTTACAAATTAG-GGGTATTTCGATAATTTCAAAAACCAGGGGTATTTCA
10213663 GTAATTTTACGAACTAG
65 GTAATTTTACGAACTAG
* * * * *
10213680 GGGTATTTTGGTAATTTTACAAATTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCAG
1 GGGTATTTTGGTAATTTTACAAATTAGGGGTATTTCGATAATTTCAAAAACCAGGGGTATTTCAG
10213745 TAATTT
66 TAATTT
10213751 CACAATCGAG
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
81 61 0.98
82 1 0.02
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.41
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAATTAGGGGTATTTCGATAATTTCAAAAACCAGGGGTATTTCAG
TAATTTTACGAACTAG
Found at i:10213819 original size:27 final size:27
Alignment explanation
Indices: 10213754--10214005 Score: 299
Period size: 27 Copynumber: 9.3 Consensus size: 27
10213744 GTAATTTCAC
*
10213754 AATCGAGGGTAAAATGGTAATTTTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
10213781 AA-CTAGGGGTAAAATGGTAATTTTATA
1 AATCGA-GGGTAAAATGGTAATTCTATA
* * *
10213808 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
** ** *
10213835 TTTCGAGGGTAAAACAGAAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
10213862 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* ***
10213889 AATCGGGGGTAAAACAATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
10213916 AATTGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
10213943 AATCAAGGGTAAAATGGTAATTTTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
10213970 AATCGAGGGTAAAACGGTAATTTTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
10213997 AATCGAGGG
1 AATCGAGGG
10214006 CATTTCAGTA
Statistics
Matches: 190, Mismatches: 33, Indels: 4
0.84 0.15 0.02
Matches are distributed among these distances:
26 2 0.01
27 186 0.98
28 2 0.01
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTATA
Found at i:10213872 original size:81 final size:82
Alignment explanation
Indices: 10213756--10214005 Score: 337
Period size: 81 Copynumber: 3.1 Consensus size: 82
10213746 AATTTCACAA
* *
10213756 TCGAGGGTAAAATGGTAATTTTATAAA-CTAGGGGTAAAATGGTAATTTTATAAATCGAGGGTAA
1 TCGAGGGTAAAATGGTAATTCTATAAATC-AAGGGTAAAATGGTAATTTTATAAATCGAGGGTAA
* *
10213820 AACGATAATTCTGT-ATT
65 AACGATAATTCTATAAAT
** * * * * *
10213837 TCGAGGGTAAAACAGAAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGGGGGTAAA
1 TCGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAA
*
10213902 ACAATAATTCTATAAAT
66 ACGATAATTCTATAAAT
10213919 T-GAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAA
1 TCGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAA
* *
10213983 ACGGTAATTTTATAAA-
66 ACGATAATTCTATAAAT
10213999 TCGAGGG
1 TCGAGGG
10214006 CATTTCAGTA
Statistics
Matches: 144, Mismatches: 22, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
80 1 0.01
81 139 0.97
82 4 0.03
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.30
Consensus pattern (82 bp):
TCGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAA
ACGATAATTCTATAAAT
Found at i:10229480 original size:35 final size:35
Alignment explanation
Indices: 10229430--10229499 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
10229420 TTGAATGATC
*
10229430 ATGGTGGTTCGAGGAGTTTATACTCCTCATTCCTG
1 ATGGTGGTTCAAGGAGTTTATACTCCTCATTCCTG
*
10229465 ATGGTGGTTCAAGGAGTTTATACTCCTTATTCCTG
1 ATGGTGGTTCAAGGAGTTTATACTCCTCATTCCTG
10229500 CTATCAATCT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.19, C:0.19, G:0.24, T:0.39
Consensus pattern (35 bp):
ATGGTGGTTCAAGGAGTTTATACTCCTCATTCCTG
Found at i:10234010 original size:22 final size:22
Alignment explanation
Indices: 10233982--10234103 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
10233972 TTCCACATCC
10233982 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
10234004 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
10234028 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
10234051 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
10234075 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
10234098 ATCACA
1 ATCACA
10234104 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:10234017 original size:47 final size:47
Alignment explanation
Indices: 10233975--10235027 Score: 1853
Period size: 47 Copynumber: 22.3 Consensus size: 47
10233965 TATACACTTC
* * *
10233975 CACATCCATCACATTGGCCATTCGGCCTTATCACATATATACACT-TT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACA-TGTT
* * **
10234022 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
10234069 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
10234116 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
10234163 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
10234210 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
10234257 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
10234304 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
10234351 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
10234398 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
10234445 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
10234492 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
10234539 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
10234586 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
10234633 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
10234680 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
10234727 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
10234774 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
*
10234821 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACCCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
* *
10234868 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACT-TT
1 CACATTCATCACATTGGCCATTCGGCCTTATCAC--ACATACACA-TGTT
* *
10234917 CACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACACT-TT
1 CACATTCATCACATTGGCCATTCGGCCTTATCAC--ACATACACA-TGTT
* * *
10234966 CACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACT-TT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACA-TGTT
*
10235013 CACATTTATTCACAT
1 CACATTCA-TCACAT
10235028 ATACTTCACA
Statistics
Matches: 986, Mismatches: 15, Indels: 9
0.98 0.01 0.01
Matches are distributed among these distances:
46 1 0.00
47 889 0.90
48 6 0.01
49 89 0.09
50 1 0.00
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.31
Consensus pattern (47 bp):
CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
Found at i:10234855 original size:22 final size:22
Alignment explanation
Indices: 10234828--10234903 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
10234818 GTTCACATTC
10234828 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* ** * *
10234850 ATCACACATACCCATGTTC-ACATT
1 ATCACA-TTGGCCA--TTCGGCCTT
10234874 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
10234897 ATCACAT
1 ATCACAT
10234904 ATATATACAC
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 16 0.41
23 7 0.18
24 7 0.18
25 9 0.23
ACGTcount: A:0.25, C:0.33, G:0.12, T:0.30
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:10236414 original size:85 final size:85
Alignment explanation
Indices: 10236286--10237229 Score: 1879
Period size: 85 Copynumber: 11.1 Consensus size: 85
10236276 TATTTTATTG
*
10236286 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
10236351 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
10236371 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
10236436 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
10236456 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
10236521 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
10236541 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
10236606 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
10236626 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
10236691 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
10236711 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
10236776 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
10236796 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
10236861 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
10236881 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
10236946 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
10236966 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
10237031 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
10237051 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
10237116 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
10237136 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
10237201 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
10237221 CCCATGCTC
1 CCCATGCTC
10237230 ATGGCCGGCC
Statistics
Matches: 858, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 858 1.00
ACGTcount: A:0.27, C:0.26, G:0.08, T:0.39
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:10245857 original size:39 final size:39
Alignment explanation
Indices: 10245683--10245840 Score: 253
Period size: 39 Copynumber: 4.1 Consensus size: 39
10245673 TGTGAATATA
* * *
10245683 TATACGCGAGAATTATATCTGGACTTCAGGTCCGCAGGA
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
*
10245722 TATAAGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
* *
10245761 TATATGCGAGAATTATATCCGGACTTCATGTCCGTAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
*
10245800 TATATGCGAGAATTATATCCGGACTTTAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
10245839 TA
1 TA
10245841 CGTGCTGGAC
Statistics
Matches: 110, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 110 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (39 bp):
TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
Found at i:10248798 original size:48 final size:48
Alignment explanation
Indices: 10248727--10248832 Score: 176
Period size: 48 Copynumber: 2.2 Consensus size: 48
10248717 CAAGATAAAT
* * *
10248727 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
10248775 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
10248823 ATGTGTATAT
1 ATATGTATAT
10248833 ATTGTGGCCG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.34, C:0.06, G:0.27, T:0.33
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:10249016 original size:37 final size:37
Alignment explanation
Indices: 10248966--10249037 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
10248956 GAAATATATT
*
10248966 CCGGGTAAGACCCGATGGCTACGTGTGGAGATTATGC
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGC
*
10249003 CCGGGTAAGACCCGATGACTACGTGTGGGGATTAT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTAT
10249038 TCGAGCTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.22, C:0.21, G:0.35, T:0.22
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGC
Found at i:10253252 original size:49 final size:49
Alignment explanation
Indices: 10253144--10253629 Score: 799
Period size: 49 Copynumber: 10.1 Consensus size: 49
10253134 GAAATGATAG
*
10253144 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
10253191 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
10253240 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
10253289 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAGGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
10253338 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
10253387 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
10253436 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
10253485 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
10253532 TAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * * *
10253579 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
10253626 TAAG
1 TAAG
10253630 TCCCGAAGGG
Statistics
Matches: 416, Mismatches: 17, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
45 1 0.00
47 123 0.30
48 1 0.00
49 291 0.70
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (49 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:10253806 original size:37 final size:37
Alignment explanation
Indices: 10253748--10253826 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
10253738 CCGAGCTCTA
* * * *
10253748 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
*
10253785 AAGACCCGATAACTTCATGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
10253822 AAGAC
1 AAGAC
10253827 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
Found at i:10259801 original size:79 final size:78
Alignment explanation
Indices: 10259690--10259914 Score: 281
Period size: 79 Copynumber: 2.8 Consensus size: 78
10259680 GCTACTCGTT
* * *
10259690 CAAATGCTTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGATATAGTAACTCGCACAA-TGCCTTCGGGACTTAACCCGG
10259755 ATTTAGTAACTCGCA
64 ATTTAGTAACTCGCA
* *
10259770 CAAATGCCTTCGGGCTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCAG
1 CAAATGCCTTCGGGCTTAGCCCGGATA-TAGTAACTCGCAC-AATGCCTTCGGGACTTAACCCGG
10259834 ATTTAGTAACTCGCA
64 ATTTAGTAACTCGCA
* * * * * * *
10259849 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGG-GCTTAGCCCGGATATAGTAAC-TCGCACAATGCCTTCGGGACTTAACCCGG
10259914 A
64 A
10259915 CATCATTCAA
Statistics
Matches: 126, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 69 0.55
80 50 0.40
81 6 0.05
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGAT
TTAGTAACTCGCA
Found at i:10259874 original size:119 final size:120
Alignment explanation
Indices: 10259690--10259914 Score: 296
Period size: 119 Copynumber: 1.9 Consensus size: 120
10259680 GCTACTCGTT
* * * *
10259690 CAAATGCTTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
10259755 ATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* **
10259809 CAAATGCCTTCGGGACTTAACCCAGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAACCC-GATTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* *
10259872 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
10259915 CATCATTCAA
Statistics
Matches: 91, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
118 3 0.03
119 66 0.73
120 22 0.24
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAACCCGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:10259914 original size:40 final size:40
Alignment explanation
Indices: 10259671--10259914 Score: 273
Period size: 40 Copynumber: 6.1 Consensus size: 40
10259661 CAGAATTTAA
** * *
10259671 CCGGATATAGCT-ACTCGTTCAAATGCTTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
10259711 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
10259751 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
10259790 CCGGA-ATTAGTATCTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
10259830 CCAGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
10259870 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
10259910 CCGGA
1 CCGGA
10259915 CATCATTCAA
Statistics
Matches: 172, Mismatches: 25, Indels: 14
0.82 0.12 0.07
Matches are distributed among these distances:
39 39 0.23
40 122 0.71
41 11 0.06
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:10264457 original size:40 final size:40
Alignment explanation
Indices: 10264402--10264581 Score: 265
Period size: 40 Copynumber: 4.5 Consensus size: 40
10264392 CGGATGATAA
*
10264402 CCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACTATAT
10264442 CCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACTATAT
* *
10264482 CCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACTATAT
* * * *
10264522 CCGGGCTAAGTCCCGAAGGCATTTGAGCG-GGTAGCTATGT
1 CCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTA-CTATAT
*
10264562 CC-GGCTAAATCCCGAAGGTA
1 CCGGGCTAAGTCCCGAAGGTA
10264582 CTTGGTTTGG
Statistics
Matches: 130, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 19 0.15
40 111 0.85
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACTATAT
Found at i:10269504 original size:22 final size:22
Alignment explanation
Indices: 10269479--10269523 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
10269469 AATTGTACAA
10269479 AAATTATTATGGGTTATAATTT
1 AAATTATTATGGGTTATAATTT
10269501 AAATTATTATGGGTTATAATTT
1 AAATTATTATGGGTTATAATTT
10269523 A
1 A
10269524 TATGCTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.38, C:0.00, G:0.13, T:0.49
Consensus pattern (22 bp):
AAATTATTATGGGTTATAATTT
Found at i:10271000 original size:33 final size:33
Alignment explanation
Indices: 10270940--10271005 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 33
10270930 GCATGCAGTA
* * * *
10270940 ACAGTCTGGGCCTAGGCCTTATTCAATATTAGT
1 ACAGCCTGGGCCTAGGCCCTATACAATAATAGT
10270973 ACAGCCTGGGCCTTA-GCCCTATACAATAATAGT
1 ACAGCCTGGGCC-TAGGCCCTATACAATAATAGT
10271006 GTGGGCCTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 26 0.93
34 2 0.07
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (33 bp):
ACAGCCTGGGCCTAGGCCCTATACAATAATAGT
Found at i:10275628 original size:15 final size:15
Alignment explanation
Indices: 10275585--10275629 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
10275575 GGTATTGTAA
**
10275585 CTTGGATTTCTGAAT
1 CTTGGATTTCTTTAT
10275600 CTTGGGAGTTTCTTTAT
1 CTT-GGA-TTTCTTTAT
10275617 CTTGGATTTCTTT
1 CTTGGATTTCTTT
10275630 GTCTCAAACT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 10 0.38
16 6 0.23
17 10 0.38
ACGTcount: A:0.13, C:0.13, G:0.20, T:0.53
Consensus pattern (15 bp):
CTTGGATTTCTTTAT
Found at i:10286849 original size:47 final size:45
Alignment explanation
Indices: 10286796--10286918 Score: 131
Period size: 47 Copynumber: 2.7 Consensus size: 45
10286786 TGTGGCCATG
10286796 ACATGTGATAAGGCCGAATGGCCAATGTGATGA-ATGTGGAAGTGCA
1 ACATGTGATAAGGCCGAATGGCCAATGTGAT-ATATGTGGAAGTG-A
* * ** * *
10286842 TACATGTGATATGGCCGGATGGTTAATGTGATATATGTGTACGTGA
1 -ACATGTGATAAGGCCGAATGGCCAATGTGATATATGTGGAAGTGA
* *
10286888 ATATGTGATAAGGCCGAATGACCAATTGTGA
1 ACATGTGATAAGGCCGAATGGCCAA-TGTGA
10286919 AAAGTGTGCA
Statistics
Matches: 62, Mismatches: 12, Indels: 5
0.78 0.15 0.06
Matches are distributed among these distances:
45 19 0.31
46 7 0.11
47 36 0.58
ACGTcount: A:0.31, C:0.11, G:0.30, T:0.28
Consensus pattern (45 bp):
ACATGTGATAAGGCCGAATGGCCAATGTGATATATGTGGAAGTGA
Found at i:10287316 original size:30 final size:30
Alignment explanation
Indices: 10287282--10287342 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
10287272 TGCTTGTATA
10287282 ATGTAGTATATACTAAGCTTTCATGTATGT
1 ATGTAGTATATACTAAGCTTTCATGTATGT
10287312 ATGTAGTATATACTAAGCTTTCATGTATGT
1 ATGTAGTATATACTAAGCTTTCATGTATGT
10287342 A
1 A
10287343 CTCGTGTACA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.31, C:0.10, G:0.16, T:0.43
Consensus pattern (30 bp):
ATGTAGTATATACTAAGCTTTCATGTATGT
Found at i:10289454 original size:24 final size:24
Alignment explanation
Indices: 10289418--10289464 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
10289408 AGATATCCGG
*
10289418 GCTAAGTCTCGAAGAGCATTCGTT
1 GCTAAGTCCCGAAGAGCATTCGTT
10289442 GCTAAGTCCCGAAGAGCATTCGT
1 GCTAAGTCCCGAAGAGCATTCGT
10289465 GCTGGTGTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (24 bp):
GCTAAGTCCCGAAGAGCATTCGTT
Found at i:10289632 original size:40 final size:40
Alignment explanation
Indices: 10289588--10289698 Score: 186
Period size: 40 Copynumber: 2.8 Consensus size: 40
10289578 ATTACTATAC
10289588 GGCTAAGTCTCGAAGAGCATTCGTGCTGGTGTTATATCCA
1 GGCTAAGTCTCGAAGAGCATTCGTGCTGGTGTTATATCCA
**
10289628 GGCTAAGTCTCGAAGAGCATTCGTGCTGGTGTTATATCTG
1 GGCTAAGTCTCGAAGAGCATTCGTGCTGGTGTTATATCCA
* *
10289668 GGCTAGGTCTCGAAGAGCATTCATGCTGGTG
1 GGCTAAGTCTCGAAGAGCATTCGTGCTGGTG
10289699 ATGTGTATTC
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 67 1.00
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.30
Consensus pattern (40 bp):
GGCTAAGTCTCGAAGAGCATTCGTGCTGGTGTTATATCCA
Found at i:10295894 original size:15 final size:15
Alignment explanation
Indices: 10295874--10295937 Score: 83
Period size: 15 Copynumber: 4.3 Consensus size: 15
10295864 GACATAAAAA
* *
10295874 CCAAGATAGAGAAGT
1 CCAAGATAAAGAAAT
*
10295889 CCAAGACAAAGAAAT
1 CCAAGATAAAGAAAT
*
10295904 CCATGATAAAGAAAT
1 CCAAGATAAAGAAAT
*
10295919 CCAAGATACAGAAAT
1 CCAAGATAAAGAAAT
10295934 CCAA
1 CCAA
10295938 AATATAATAT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 42 1.00
ACGTcount: A:0.53, C:0.19, G:0.16, T:0.12
Consensus pattern (15 bp):
CCAAGATAAAGAAAT
Found at i:10299618 original size:52 final size:52
Alignment explanation
Indices: 10299546--10299649 Score: 138
Period size: 52 Copynumber: 2.0 Consensus size: 52
10299536 AGAACTCAAT
* *
10299546 CACATGTATCCCATCCATTATGAACTCGGACCAACTCAACGAGCTT-GGATGC
1 CACATGTATCCCATCCATTATGAACTCAGACCAACCCAACGAG-TTCGGATGC
* * * *
10299598 CACATGTATCGCATCTATTATGAACTTAGACCATCCCAACGAGTTCGGATGC
1 CACATGTATCCCATCCATTATGAACTCAGACCAACCCAACGAGTTCGGATGC
10299650 TCGCATCCAT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
51 2 0.04
52 43 0.96
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (52 bp):
CACATGTATCCCATCCATTATGAACTCAGACCAACCCAACGAGTTCGGATGC
Found at i:10299729 original size:43 final size:44
Alignment explanation
Indices: 10299625--10299730 Score: 106
Period size: 43 Copynumber: 2.4 Consensus size: 44
10299615 TTATGAACTT
* * * *
10299625 AGACCATCCCAACGAGTTCGGATGCTCGCATCCATAATGAACCC
1 AGACCAACTCAACGAGTTCGGATGCTCGCATACATAACGAACCC
** * * * *
10299669 AGACCAACTCAGTGAGTTTGGATGC-CTCATACATCACGAACTC
1 AGACCAACTCAACGAGTTCGGATGCTCGCATACATAACGAACCC
*
10299712 GGACCAACTCAACGAGTTC
1 AGACCAACTCAACGAGTTC
10299731 AGATTTCATA
Statistics
Matches: 48, Mismatches: 14, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
43 28 0.58
44 20 0.42
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.20
Consensus pattern (44 bp):
AGACCAACTCAACGAGTTCGGATGCTCGCATACATAACGAACCC
Found at i:10304323 original size:29 final size:29
Alignment explanation
Indices: 10304242--10304348 Score: 94
Period size: 29 Copynumber: 3.7 Consensus size: 29
10304232 TACATACATG
* *
10304242 CATATAGCCCACTAGGCCCAATCTTA--TT
1 CATATGGCCCACTAGGCCCAAT-TCACCTT
* * **
10304270 CAAATGGCCCATCTA-GCCCAGTTCATGTT
1 CATATGGCCCA-CTAGGCCCAATTCACCTT
* *
10304299 CTTATGGCCCACTAGGCCTAATTCACCTT
1 CATATGGCCCACTAGGCCCAATTCACCTT
*
10304328 CATATGGCCCATTAGGCCCAA
1 CATATGGCCCACTAGGCCCAA
10304349 ATCATATTAT
Statistics
Matches: 62, Mismatches: 13, Indels: 7
0.76 0.16 0.09
Matches are distributed among these distances:
27 2 0.03
28 18 0.29
29 42 0.68
ACGTcount: A:0.25, C:0.33, G:0.15, T:0.27
Consensus pattern (29 bp):
CATATGGCCCACTAGGCCCAATTCACCTT
Found at i:10304588 original size:16 final size:15
Alignment explanation
Indices: 10304567--10304596 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
10304557 CCAACTTTCA
10304567 GCTTTTCAGCATTTTG
1 GCTTTTCAGC-TTTTG
10304583 GCTTTTCAGCTTTT
1 GCTTTTCAGCTTTT
10304597 CGGCATTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.10, C:0.20, G:0.17, T:0.53
Consensus pattern (15 bp):
GCTTTTCAGCTTTTG
Found at i:10304592 original size:24 final size:24
Alignment explanation
Indices: 10304562--10304608 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
10304552 GTATCCCAAC
10304562 TTTCAGCTTTTCAGCATTTTGGCT
1 TTTCAGCTTTTCAGCATTTTGGCT
*
10304586 TTTCAGCTTTTCGGCATTTTGGC
1 TTTCAGCTTTTCAGCATTTTGGC
10304609 GTTTGCCGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.11, C:0.21, G:0.19, T:0.49
Consensus pattern (24 bp):
TTTCAGCTTTTCAGCATTTTGGCT
Found at i:10306887 original size:103 final size:103
Alignment explanation
Indices: 10306754--10306958 Score: 376
Period size: 103 Copynumber: 2.0 Consensus size: 103
10306744 TCAAACCTGC
10306754 ACTCTAGCAAAAAATTTGGTTTAAGGTGAATCAAACCCTAGGTGTAGTAGGTAGGCCTTAAGAAT
1 ACTCTAGCAAAAAATTTGGTTTAAGGTGAATCAAACCCTAGGTGTAGTAGGTAGGCCTTAAGAAT
10306819 ATTGTTGGAGAAATTGTACCACAAAAAGCCTTGTGGTG
66 ATTGTTGGAGAAATTGTACCACAAAAAGCCTTGTGGTG
*
10306857 ACTCTAG-AAAAAATTTTGGTTTAAGGTGAATCAAACCCTGGGTGTAGTAGGTAGGCCTTAAGAA
1 ACTCTAGCAAAAAA-TTTGGTTTAAGGTGAATCAAACCCTAGGTGTAGTAGGTAGGCCTTAAGAA
*
10306921 TATTGTTGGAGAAATTGTACCACAAAAAGCTTTGTGGT
65 TATTGTTGGAGAAATTGTACCACAAAAAGCCTTGTGGT
10306959 CTAGTGGCAA
Statistics
Matches: 99, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
102 6 0.06
103 93 0.94
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.29
Consensus pattern (103 bp):
ACTCTAGCAAAAAATTTGGTTTAAGGTGAATCAAACCCTAGGTGTAGTAGGTAGGCCTTAAGAAT
ATTGTTGGAGAAATTGTACCACAAAAAGCCTTGTGGTG
Found at i:10307524 original size:53 final size:52
Alignment explanation
Indices: 10307431--10307560 Score: 145
Period size: 53 Copynumber: 2.5 Consensus size: 52
10307421 AGAATACTTT
* * * * *
10307431 AGTTTACTAAAATTACTGAAATACCCCCGTTGTAAAATTACCAAAGTACCCCC
1 AGTTTA-TAAAATTACCGAAATACCACCGTCGTAAAATTACCAAAATAACCCC
* * *
10307484 AGTTTATAAAATTACCGAAATACCATCGATCGTAAAATTACTAAAATAACCTC
1 AGTTTATAAAATTACCGAAATACCACCG-TCGTAAAATTACCAAAATAACCCC
*
10307537 -GATTTGTAAAATTACCGAAATACC
1 AG-TTTATAAAATTACCGAAATACC
10307561 CTTGTAGGGT
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
52 20 0.30
53 46 0.70
ACGTcount: A:0.42, C:0.22, G:0.09, T:0.28
Consensus pattern (52 bp):
AGTTTATAAAATTACCGAAATACCACCGTCGTAAAATTACCAAAATAACCCC
Found at i:10307530 original size:26 final size:26
Alignment explanation
Indices: 10307438--10307560 Score: 92
Period size: 27 Copynumber: 4.7 Consensus size: 26
10307428 TTTAGTTTAC
* *
10307438 TAAAATTACTGAAATACCCCCG-TT-G
1 TAAAATTACCGAAATA-CCTCGATTCG
* * **
10307463 TAAAATTACC-AAAGTACCCCCAGTTTA
1 TAAAATTACCGAAA-TACCTCGA-TTCG
10307490 TAAAATTACCGAAATACCATCGA-TCG
1 TAAAATTACCGAAATACC-TCGATTCG
** *
10307516 TAAAATTACTAAAATAACCTCGATTTG
1 TAAAATTACCGAAAT-ACCTCGATTCG
10307543 TAAAATTACCGAAATACC
1 TAAAATTACCGAAATACC
10307561 CTTGTAGGGT
Statistics
Matches: 78, Mismatches: 12, Indels: 15
0.74 0.11 0.14
Matches are distributed among these distances:
24 7 0.09
25 11 0.14
26 23 0.29
27 32 0.41
28 5 0.06
ACGTcount: A:0.42, C:0.22, G:0.09, T:0.27
Consensus pattern (26 bp):
TAAAATTACCGAAATACCTCGATTCG
Found at i:10307630 original size:27 final size:27
Alignment explanation
Indices: 10307542--10307633 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
10307532 ACCTCGATTT
10307542 GTAAAATTACCGAAATACCCTTGTAGG
1 GTAAAATTACCGAAATACCCTTGTAGG
* * *
10307569 GTAGAAA-TACTGAAATACCCCTATAGG
1 GTA-AAATTACCGAAATACCCTTGTAGG
* * *
10307596 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAAAATTACCGAAATACCCTTGTAGG
10307623 GTAAAATTACC
1 GTAAAATTACC
10307634 ATTTTGCCCC
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
26 2 0.04
27 48 0.91
28 3 0.06
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (27 bp):
GTAAAATTACCGAAATACCCTTGTAGG
Found at i:10308102 original size:27 final size:27
Alignment explanation
Indices: 10308072--10308138 Score: 116
Period size: 27 Copynumber: 2.5 Consensus size: 27
10308062 ACCTGATTAT
* *
10308072 GGCTGTGTGCCAAGCGTATTTGCCTAA
1 GGCTATGTGCCAAACGTATTTGCCTAA
10308099 GGCTATGTGCCAAACGTATTTGCCTAA
1 GGCTATGTGCCAAACGTATTTGCCTAA
10308126 GGCTATGTGCCAA
1 GGCTATGTGCCAA
10308139 TATATGATTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.28
Consensus pattern (27 bp):
GGCTATGTGCCAAACGTATTTGCCTAA
Found at i:10308303 original size:27 final size:26
Alignment explanation
Indices: 10308271--10308378 Score: 94
Period size: 27 Copynumber: 4.0 Consensus size: 26
10308261 TTCTGTTAAA
* *
10308271 GTGGCTTTGCCACATTATCAGTTTCTG
1 GTGGCTATGCCACAATATC-GTTTCTG
10308298 GTGGCTATGCCACAAATATC-TATTCTG
1 GTGGCTATGCCAC-AATATCGT-TTCTG
* *
10308325 GAGGCTCTGCCACAATATCTGTTTCTG
1 GTGGCTATGCCACAATATC-GTTTCTG
* * *
10308352 GTGACTCTGTCACAATATC-TGTTCTG
1 GTGGCTATGCCACAATATCGT-TTCTG
10308378 G
1 G
10308379 CAGCCATGCT
Statistics
Matches: 69, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
25 1 0.01
26 13 0.19
27 49 0.71
28 6 0.09
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.36
Consensus pattern (26 bp):
GTGGCTATGCCACAATATCGTTTCTG
Found at i:10308393 original size:53 final size:54
Alignment explanation
Indices: 10308273--10308378 Score: 142
Period size: 54 Copynumber: 2.0 Consensus size: 54
10308263 CTGTTAAAGT
* * *
10308273 GGCTTTGCCACATTATCAGTTTCTGGTGGCTATGCCACAAATATCTATTCTGGA
1 GGCTCTGCCACAATATCAGTTTCTGGTGACTATGCCACAAATATCTATTCTGGA
* * * *
10308327 GGCTCTGCCACAATATCTGTTTCTGGTGACTCTGTCAC-AATATCTGTTCTGG
1 GGCTCTGCCACAATATCAGTTTCTGGTGACTATGCCACAAATATCTATTCTGG
10308379 CAGCCATGCT
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
53 13 0.29
54 32 0.71
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (54 bp):
GGCTCTGCCACAATATCAGTTTCTGGTGACTATGCCACAAATATCTATTCTGGA
Found at i:10308505 original size:6 final size:6
Alignment explanation
Indices: 10308496--10308538 Score: 52
Period size: 6 Copynumber: 7.0 Consensus size: 6
10308486 TTGCATTCAC
*
10308496 ATTCTG ATTCTG ATTCTG -TTACCTA ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG
10308539 TCACCTAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
5 2 0.06
6 26 0.81
7 2 0.06
8 2 0.06
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:10308524 original size:25 final size:25
Alignment explanation
Indices: 10308496--10308587 Score: 130
Period size: 25 Copynumber: 3.7 Consensus size: 25
10308486 TTGCATTCAC
*
10308496 ATTCTGATTCTGATTCTGTTACCTA
1 ATTCTGATTCTGATTCTGTCACCTA
10308521 ATTCTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTA
* * *
10308546 ATTATGATTCTGATTCTGCCACCTG
1 ATTCTGATTCTGATTCTGTCACCTA
* *
10308571 ATTCTTATTCCGATTCT
1 ATTCTGATTCTGATTCT
10308588 CATTTTGATT
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 60 1.00
ACGTcount: A:0.20, C:0.23, G:0.12, T:0.46
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTA
Found at i:10308891 original size:25 final size:25
Alignment explanation
Indices: 10308857--10308920 Score: 83
Period size: 25 Copynumber: 2.6 Consensus size: 25
10308847 GTACTTGATA
* *
10308857 CTGATTCTGATTTTGTCACCTAATT
1 CTGATTCTGATTCTGCCACCTAATT
*
10308882 CTGATTCTGATTCTGCCACCTGATT
1 CTGATTCTGATTCTGCCACCTAATT
* *
10308907 CTAATTTTGATTCT
1 CTGATTCTGATTCT
10308921 CATTTTGATT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.19, C:0.22, G:0.12, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTGCCACCTAATT
Found at i:10309132 original size:334 final size:333
Alignment explanation
Indices: 10308524--10309179 Score: 1132
Period size: 334 Copynumber: 2.0 Consensus size: 333
10308514 TTACCTAATT
*
10308524 CTGATTCTGATTCTGTCACCTAATTATGATTCTGATTCTGCCACCTGATTCTTATTCCGATTCTC
1 CTGATTCTGATTCTGTCACCTAATTATGATTCTGATTCTGCCACCTGATTCTAATTCCGATTCTC
* * *
10308589 ATTTTGATTCTAGTTCTAATATGTTTCTTATTCTGTAATGGGCTAAAGCTTATCTGGTACTGTCT
66 ATTTTGATTCTAGTTCTAATATGTTTATTATTCTGTAATGGGCTAAAGCCTATCTGGTACTATCT
* * *
10308654 GTTATAATGGGTTAAGGCCCAATTGATACTGAAATTGTAAGTAGGGCTGGGTCCAGACTTTTAAT
131 GTTATAATGGGCTAAGGCCCAATTGATACTGAAACTGTAAGTAGGGCTGGGGCCAGACTTTTAAT
*
10308719 TCTTTTATATGAATGATTGTTCCTTTTATATAGTAAGGGATCTCACACTGAGTTTTCGTAAAGTC
196 TCTTTTATATGAATGACTGTTCCTTTTATATAGTAAGGGATCTCACACTGAGTTTTCGTAAAGTC
* *
10308784 ACCCCATTTATTAACCTTTCAGGTAATTTCCAGCTTTAGACAGATCGGAGCTGCGAGGGGCTCGT
261 ACCCCATTTATTAACCTTTCAGGTAATTTCCAGCCTTAGACAGATCGAAGCTGCGAGGGGCTCGT
10308849 ACTTGATA
326 ACTTGATA
* * **
10308857 CTGATTCTGATTTTGTCACCTAATTCTGATTCTGATTCTGCCACCTGATTCTAATTTTGATTCTC
1 CTGATTCTGATTCTGTCACCTAATTATGATTCTGATTCTGCCACCTGATTCTAATTCCGATTCTC
*
10308922 ATTTTGATTCTAGTTCTGATAATGTTTATTATTCTGTAATGGGCTAAAGCCTATCTGGTACTATC
66 ATTTTGATTCTAGTTCTAAT-ATGTTTATTATTCTGTAATGGGCTAAAGCCTATCTGGTACTATC
*
10308987 TGTTATAATGGGCTAAGGCCCAATTGATACTGAAACTGTAAGTAGGGCTGGGGCTAGACTTTTAA
130 TGTTATAATGGGCTAAGGCCCAATTGATACTGAAACTGTAAGTAGGGCTGGGGCCAGACTTTTAA
*
10309052 TTCTTTTATATGACTGACTGTTCCTTTTATATAGTAAGGGATCTCACACTGAGTTTTCGTAAAGT
195 TTCTTTTATATGAATGACTGTTCCTTTTATATAGTAAGGGATCTCACACTGAGTTTTCGTAAAGT
* *
10309117 CACCCCGTTTATTAACCTTTCAGGTAATTTCCAGCCTTAGACGGATCGAAGCTGCGAGGGGCT
260 CACCCCATTTATTAACCTTTCAGGTAATTTCCAGCCTTAGACAGATCGAAGCTGCGAGGGGCT
10309180 TGAAGGAAGC
Statistics
Matches: 303, Mismatches: 19, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
333 79 0.26
334 224 0.74
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.39
Consensus pattern (333 bp):
CTGATTCTGATTCTGTCACCTAATTATGATTCTGATTCTGCCACCTGATTCTAATTCCGATTCTC
ATTTTGATTCTAGTTCTAATATGTTTATTATTCTGTAATGGGCTAAAGCCTATCTGGTACTATCT
GTTATAATGGGCTAAGGCCCAATTGATACTGAAACTGTAAGTAGGGCTGGGGCCAGACTTTTAAT
TCTTTTATATGAATGACTGTTCCTTTTATATAGTAAGGGATCTCACACTGAGTTTTCGTAAAGTC
ACCCCATTTATTAACCTTTCAGGTAATTTCCAGCCTTAGACAGATCGAAGCTGCGAGGGGCTCGT
ACTTGATA
Found at i:10309736 original size:62 final size:62
Alignment explanation
Indices: 10309634--10309759 Score: 207
Period size: 62 Copynumber: 2.0 Consensus size: 62
10309624 GTGGATTGGG
* * * *
10309634 TTTTTAAAGGTTGAATTTTAGAAAATTATTTTCAGCCACGTGATCTGTTTCAAGTATTTCTC
1 TTTTCAAAGGTTGAATTTCAAAAAATTATTTTCAACCACGTGATCTGTTTCAAGTATTTCTC
*
10309696 TTTTCAAAGGTTGAATTTCAAAAAATTATTTTCAACCACGTGGTCTGTTTCAAGTATTTCTC
1 TTTTCAAAGGTTGAATTTCAAAAAATTATTTTCAACCACGTGATCTGTTTCAAGTATTTCTC
10309758 TT
1 TT
10309760 AAAAACTGTG
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.28, C:0.14, G:0.13, T:0.44
Consensus pattern (62 bp):
TTTTCAAAGGTTGAATTTCAAAAAATTATTTTCAACCACGTGATCTGTTTCAAGTATTTCTC
Done.