Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 34 of 276
Found at i:10680320 original size:29 final size:31
Alignment explanation
Indices: 10680287--10680344 Score: 77
Period size: 29 Copynumber: 1.9 Consensus size: 31
10680277 TGCATTATAT
*
10680287 ATATATATGTTGAA-TT-AAGT-TGTAAAAGA
1 ATATAGATG-TGAAGTTGAAGTATGTAAAAGA
10680316 ATATAGATGTGAAGTTGAAGTATGTAAAA
1 ATATAGATGTGAAGTTGAAGTATGTAAAA
10680345 TATGAACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 4 0.16
29 10 0.40
30 4 0.16
31 7 0.28
ACGTcount: A:0.45, C:0.00, G:0.21, T:0.34
Consensus pattern (31 bp):
ATATAGATGTGAAGTTGAAGTATGTAAAAGA
Found at i:10697323 original size:18 final size:17
Alignment explanation
Indices: 10697252--10697374 Score: 81
Period size: 18 Copynumber: 6.8 Consensus size: 17
10697242 TCGTAACTAG
10697252 AAAA-AATAACAATATATA
1 AAAATAATAA-AAT-TATA
* *
10697270 TAAATTAA-AAAATCATA
1 -AAAATAATAAAATTATA
* * *
10697287 AAAACATTAAAATTGTA
1 AAAATAATAAAATTATA
10697304 AAAATAATAAATATTATA
1 AAAATAATAAA-ATTATA
10697322 AAAATAATAAAATTATTA
1 AAAATAATAAAATTA-TA
10697340 GAAATTATTAA-AAAATTATA
1 -AAA--A-TAATAAAATTATA
*
10697360 AAAACTATTAAAATT
1 AAAA-TAATAAAATT
10697375 TATTAATTTT
Statistics
Matches: 83, Mismatches: 12, Indels: 19
0.73 0.11 0.17
Matches are distributed among these distances:
16 4 0.05
17 26 0.31
18 27 0.33
19 11 0.13
20 4 0.05
21 8 0.10
22 3 0.04
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.31
Consensus pattern (17 bp):
AAAATAATAAAATTATA
Found at i:10697357 original size:11 final size:10
Alignment explanation
Indices: 10697302--10697380 Score: 60
Period size: 10 Copynumber: 8.3 Consensus size: 10
10697292 ATTAAAATTG
*
10697302 TAAAAA-TAA
1 TAAAAATTAT
*
10697311 TAAATATTA-
1 TAAAAATTAT
*
10697320 TAAAAA-TAA
1 TAAAAATTAT
10697329 T-AAAATTAT
1 TAAAAATTAT
*
10697338 TAGAAATTAT
1 TAAAAATTAT
10697348 TAAAAAATTA-
1 T-AAAAATTAT
*
10697358 TAAAAACTAT
1 TAAAAATTAT
*
10697368 TAAAATTTAT
1 TAAAAATTAT
10697378 TAA
1 TAA
10697381 TTTTTAGAAT
Statistics
Matches: 56, Mismatches: 8, Indels: 11
0.75 0.11 0.15
Matches are distributed among these distances:
8 6 0.11
9 21 0.38
10 22 0.39
11 7 0.12
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.35
Consensus pattern (10 bp):
TAAAAATTAT
Found at i:10697369 original size:30 final size:29
Alignment explanation
Indices: 10697315--10697380 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 29
10697305 AAATAATAAA
*
10697315 TATTATAAAAATAATAAAATTATTAGAAA-T
1 TATTA-AAAAATAATAAAACTATTA-AAATT
*
10697345 TATTAAAAAATTATAAAAACTATTAAAATT
1 TATTAAAAAATAAT-AAAACTATTAAAATT
10697375 TATTAA
1 TATTAA
10697381 TTTTTAGAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
29 11 0.34
30 21 0.66
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (29 bp):
TATTAAAAAATAATAAAACTATTAAAATT
Found at i:10697982 original size:40 final size:40
Alignment explanation
Indices: 10697927--10698011 Score: 170
Period size: 40 Copynumber: 2.1 Consensus size: 40
10697917 AATAGAGAAA
10697927 TTTAACAATGTTAACAATTCTTAAAAGTTCACATAAACAT
1 TTTAACAATGTTAACAATTCTTAAAAGTTCACATAAACAT
10697967 TTTAACAATGTTAACAATTCTTAAAAGTTCACATAAACAT
1 TTTAACAATGTTAACAATTCTTAAAAGTTCACATAAACAT
10698007 TTTAA
1 TTTAA
10698012 TTTGAATAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.45, C:0.14, G:0.05, T:0.36
Consensus pattern (40 bp):
TTTAACAATGTTAACAATTCTTAAAAGTTCACATAAACAT
Found at i:10700481 original size:18 final size:19
Alignment explanation
Indices: 10700440--10700482 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
10700430 TTAATTCATG
10700440 ATATTAATATCAAATAATA
1 ATATTAATATCAAATAATA
*
10700459 ATATTGAATAT-AATTAA-A
1 ATATT-AATATCAAATAATA
10700477 ATATTA
1 ATATTA
10700483 TATTAATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 1 0.05
18 6 0.27
19 10 0.45
20 5 0.23
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (19 bp):
ATATTAATATCAAATAATA
Found at i:10702188 original size:29 final size:30
Alignment explanation
Indices: 10702129--10702188 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
10702119 GGATTTATTA
* *
10702129 ATTGCTTAAATTCGGTTAAGAGTTTAATTG
1 ATTGCTTAAATTCGATCAAGAGTTTAATTG
* *
10702159 ATTGTTTAAATTCGATCAAG-GTTTAGTTG
1 ATTGCTTAAATTCGATCAAGAGTTTAATTG
10702188 A
1 A
10702189 GTGATATTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 9 0.35
30 17 0.65
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (30 bp):
ATTGCTTAAATTCGATCAAGAGTTTAATTG
Found at i:10705482 original size:42 final size:43
Alignment explanation
Indices: 10705373--10705544 Score: 141
Period size: 43 Copynumber: 4.0 Consensus size: 43
10705363 AGCTCGTACA
* * * * *
10705373 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCGAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATATCG
* * * *
10705416 ATGGCACTGTCCCAGATAGGGTCTTACACGAAATCAAATAT-G
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATATCG
* *
10705458 ATGCCAATGTCCCAAACATGGTCTTACACGTAAATCATAA-GTCG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AAATCA-AATATCG
** ** * * * *
10705502 ATGCCAACATCCCAGATGTAGTATTACACGAAAACACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATATCG
10705545 GATCCTATGC
Statistics
Matches: 100, Mismatches: 25, Indels: 8
0.75 0.19 0.06
Matches are distributed among these distances:
42 27 0.27
43 47 0.47
44 26 0.26
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATATCG
Found at i:10705494 original size:43 final size:44
Alignment explanation
Indices: 10705373--10705517 Score: 145
Period size: 43 Copynumber: 3.4 Consensus size: 44
10705363 AGCTCGTACA
* * * *
10705373 ATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCGAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAATATCG
* * * *
10705416 ATGGCACTGTCCCAGATAGGGTCTTACACG-AAATCAAATAT-G
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAATATCG
* *
10705458 ATGCCAATGTCCCAAACATGGTCTTACACGTAAATCATAA-GTCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCA-AATATCG
**
10705502 ATGCCAACATCCCAGA
1 ATGCCAATGTCCCAGA
10705518 TGTAGTATTA
Statistics
Matches: 81, Mismatches: 17, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
42 26 0.32
43 39 0.48
44 16 0.20
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (44 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAATATCG
Found at i:10708987 original size:68 final size:69
Alignment explanation
Indices: 10708873--10709127 Score: 263
Period size: 68 Copynumber: 3.8 Consensus size: 69
10708863 TTCTTAGTTC
* * * * *
10708873 ATTGTCTTGGC-AGGCTTTATATGTTGCCATAACCCAACTAT-GGTCTTACACTATGTAGTGCCA
1 ATTGTCTTGGCGA-ACTTCATATGTTGCCATAACCCAACAATAGATCTTACACTATATAGTGCCA
10708936 TGTTT
65 TGTTT
* * * * * * *
10708941 ACTATCTTGGCGAACTTCGTATATTGCCATAGCCCAACAATAG-TCTTACTCTATATTGTGCCAT
1 ATTGTCTTGGCGAACTTCATATGTTGCCATAACCCAACAATAGATCTTACACTATATAGTGCCAT
10709005 GTTT
66 GTTT
* * * * *
10709009 ATTGTCCTAGTGAACTTCATATGTTGCCATAACCCATC--TACGATCTTACACTATATGGTGCCA
1 ATTGTCTTGGCGAACTTCATATGTTGCCATAACCCAACAATA-GATCTTACACTATATAGTGCCA
10709072 TGTTT
65 TGTTT
* *
10709077 ATTGTCTTGAC-AGACTTCATATGTTACCATAACCCAACAAT-GATCTTACAC
1 ATTGTCTTGGCGA-ACTTCATATGTTGCCATAACCCAACAATAGATCTTACAC
10709128 CGTTATAGGC
Statistics
Matches: 152, Mismatches: 28, Indels: 14
0.78 0.14 0.07
Matches are distributed among these distances:
66 2 0.01
67 2 0.01
68 145 0.95
69 2 0.01
70 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (69 bp):
ATTGTCTTGGCGAACTTCATATGTTGCCATAACCCAACAATAGATCTTACACTATATAGTGCCAT
GTTT
Found at i:10709256 original size:122 final size:122
Alignment explanation
Indices: 10709053--10709303 Score: 335
Period size: 122 Copynumber: 2.1 Consensus size: 122
10709043 CATCTACGAT
* *
10709053 CTTACACTATATGGTGCCATGTTTATTGTCTTGACAGACTTCATATGTTACCATAACCCAACAAT
1 CTTACACTATATGGAGCCATGTTTATTGTCATGACAGACTTCATATGTTACCATAACCCAACAAT
* * * *
10709118 GATCTTACACCGTTATAGGCTTAAAGCCTCCGATTGGTGCCATGGCCCAGCTATGGC
66 GATCGTACACCGTTATAGGCTTAAAGCCTCCAATTGGTGCCATGACCCAACTATGGC
* *
10709175 CTTACACTATATGGAGCCATGTTTATTGTCATGA-AGGACTTCATATGTTACCAT-AGCCAACCT
1 CTTACACTATATGGAGCCATGTTTATTGTCATGACA-GACTTCATATGTTACCATAACCCAA-CA
** * * * * *
10709238 ATGATCGTACACTTTTATAGGTTTAGAGCCTCTAATTGGTGCCATGACCCAATTATGGT
64 ATGATCGTACACCGTTATAGGCTTAAAGCCTCCAATTGGTGCCATGACCCAACTATGGC
10709297 CTTACAC
1 CTTACAC
10709304 ATCATTCTCA
Statistics
Matches: 112, Mismatches: 15, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
121 6 0.05
122 106 0.95
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.33
Consensus pattern (122 bp):
CTTACACTATATGGAGCCATGTTTATTGTCATGACAGACTTCATATGTTACCATAACCCAACAAT
GATCGTACACCGTTATAGGCTTAAAGCCTCCAATTGGTGCCATGACCCAACTATGGC
Found at i:10711040 original size:49 final size:50
Alignment explanation
Indices: 10710963--10711064 Score: 152
Period size: 49 Copynumber: 2.1 Consensus size: 50
10710953 TCCTATAGAG
* * *
10710963 AACATATGGAAAGCATTAAACACTTTATATTCT-TACGAAAAAGAATTAT
1 AACATATGGAAAGCATTAAAAACGTTATATTCTCTACAAAAAAGAATTAT
* *
10711012 AACATATGGAAAGTATTAAAAACGTTATATTCTCTCCAAAAAAGAATTAT
1 AACATATGGAAAGCATTAAAAACGTTATATTCTCTACAAAAAAGAATTAT
10711062 AAC
1 AAC
10711065 TACCATGTTT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
49 30 0.64
50 17 0.36
ACGTcount: A:0.48, C:0.13, G:0.10, T:0.29
Consensus pattern (50 bp):
AACATATGGAAAGCATTAAAAACGTTATATTCTCTACAAAAAAGAATTAT
Found at i:10716944 original size:30 final size:30
Alignment explanation
Indices: 10716886--10716944 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
10716876 ATTTTCGGGC
* **
10716886 CTAGGGGTAAAATGGTTATTTTGTCAAAGT
1 CTAGGGGTAAAATGGTCATTTTACCAAAGT
10716916 CTAGGGGTAAAATGGTCATTTTACCAAAG
1 CTAGGGGTAAAATGGTCATTTTACCAAAG
10716945 ATATAAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.10, G:0.25, T:0.32
Consensus pattern (30 bp):
CTAGGGGTAAAATGGTCATTTTACCAAAGT
Found at i:10717402 original size:46 final size:46
Alignment explanation
Indices: 10717334--10717485 Score: 143
Period size: 46 Copynumber: 3.3 Consensus size: 46
10717324 GCCAGTGTAA
* *
10717334 GACATGGCATCGGCATTGAGACGAGTGCTAGTGTAAGACATGTTTGG
1 GACAT-GCATCGGCCTCGAGACGAGTGCTAGTGTAAGACATGTTTGG
*
10717381 GACATGCATCGGCCTCGAGACGTA-AGCTAGTGTAAGACATGTCTT-G
1 GACATGCATCGGCCTCGAGACG-AGTGCTAGTGTAAGACATGT-TTGG
* * * * *
10717427 GACATGCATC-GACTACAAGATGTGT-C-AGTGCAAGACCATGTTTGG
1 GACATGCATCGGCCT-CGAGACGAGTGCTAGTGTAAGA-CATGTTTGG
10717472 GACATGACATCGGC
1 GACATG-CATCGGC
10717486 ACAGATATAC
Statistics
Matches: 87, Mismatches: 10, Indels: 16
0.77 0.09 0.14
Matches are distributed among these distances:
44 10 0.11
45 16 0.18
46 52 0.60
47 9 0.10
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.24
Consensus pattern (46 bp):
GACATGCATCGGCCTCGAGACGAGTGCTAGTGTAAGACATGTTTGG
Found at i:10718398 original size:19 final size:19
Alignment explanation
Indices: 10718370--10718422 Score: 97
Period size: 19 Copynumber: 2.8 Consensus size: 19
10718360 GGTAAAGAGC
10718370 ACACGCCCGTGTGCTAGGG
1 ACACGCCCGTGTGCTAGGG
*
10718389 ACATGCCCGTGTGCTAGGG
1 ACACGCCCGTGTGCTAGGG
10718408 ACACGCCCGTGTGCT
1 ACACGCCCGTGTGCT
10718423 GAACCCATGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.15, C:0.32, G:0.34, T:0.19
Consensus pattern (19 bp):
ACACGCCCGTGTGCTAGGG
Found at i:10720074 original size:55 final size:53
Alignment explanation
Indices: 10719884--10720139 Score: 222
Period size: 55 Copynumber: 4.8 Consensus size: 53
10719874 ACATGGGTAC
* * * * *
10719884 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA
* *
10719933 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
* * * *
10719986 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CTTTTGCCTTATAGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATC-CTTGCCTTAT-G-AA
* ***
10720041 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA
* * *
10720094 CCTTACCAATTGCCATGCCTT-AGCATGGTGTTACATGGTATCCTTG
1 -CTTACCAA-TGCCATGTCTTGA-CATGGTCTTACATGGGATCCTTG
10720140 AACCCAAATG
Statistics
Matches: 172, Mismatches: 23, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
49 38 0.22
50 1 0.01
52 1 0.01
53 49 0.28
54 11 0.06
55 71 0.41
56 1 0.01
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
Found at i:10720075 original size:108 final size:110
Alignment explanation
Indices: 10719931--10720131 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
10719921 ATCCTTTTGA
* *
10719931 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
*
10719994 -TGCCATGCCTTGGCATGGTCTTACATGGGACTTTTGCCTTATAGT
65 TTGCCATGCCTTAGCATGGTCTTACATGGGACTTTTGCCTTATAGT
* * *
10720039 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
*
10720104 TGCCATGCCTTAGCATGGTGTTACATGG
66 TGCCATGCCTTAGCATGGTCTTACATGG
10720132 TATCCTTGAA
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.59
109 7 0.08
110 26 0.31
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTAGCATGGTCTTACATGGGACTTTTGCCTTATAGT
Found at i:10724135 original size:39 final size:39
Alignment explanation
Indices: 10724090--10724268 Score: 340
Period size: 39 Copynumber: 4.6 Consensus size: 39
10724080 AAGCAAGACA
*
10724090 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
10724129 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
10724168 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
10724207 CTGGAAATGTATCCGGGCTAAAGTCCCACAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
10724246 CTGGAAATGTATCCGGGCTAAAG
1 CTGGAAATGTATCCGGGCTAAAG
10724269 NNNNNNNNNN
Statistics
Matches: 138, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
39 138 1.00
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.22
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:10726681 original size:46 final size:46
Alignment explanation
Indices: 10726583--10726704 Score: 151
Period size: 46 Copynumber: 2.6 Consensus size: 46
10726573 TGTAACCGTG
10726583 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATATGA
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATATGA
* *
10726629 CTGATGCATGTCCCAGACATGTCTTACACTAGCCCTCGTC-TCA-AT-A
1 CCGATGCATGTCCCAGACATGTCTTACACTAG--CTC-TCATAATATGA
*
10726675 CCGATGCCATGTCCCAAACATGGTCTTACA
1 CCGATG-CATGTCCCAGACAT-GTCTTACA
10726705 TTGGCACACA
Statistics
Matches: 67, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
46 37 0.55
47 15 0.22
48 13 0.19
49 2 0.03
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATATGA
Found at i:10729286 original size:53 final size:54
Alignment explanation
Indices: 10729157--10729399 Score: 243
Period size: 55 Copynumber: 4.6 Consensus size: 54
10729147 ACATGGGTAC
* * * *
10729157 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
10729206 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * * *
10729259 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CTTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATC-CTTGCCTTAT-GAAA
* * * *
10729314 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
10729367 CCTTACCAATTGCCATGCCTT-AGCATGGTCTTA
1 -CTTACCAA-TGCCATGCCTTGA-CATGGTCTTA
10729400 AAGCTACCTC
Statistics
Matches: 162, Mismatches: 20, Indels: 18
0.81 0.10 0.09
Matches are distributed among these distances:
49 38 0.23
50 1 0.01
52 1 0.01
53 49 0.30
54 11 0.07
55 61 0.38
56 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:10731110 original size:28 final size:28
Alignment explanation
Indices: 10731079--10731133 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
10731069 GACATGGGTG
* *
10731079 TGTTATGGCCGTGTGAAGGACACGGGCA
1 TGTTATGGCAGTGTGAAAGACACGGGCA
10731107 TGTTATGGCAGTGTGAAAGACACGGGC
1 TGTTATGGCAGTGTGAAAGACACGGGC
10731134 TAGGCACACG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.24, C:0.16, G:0.38, T:0.22
Consensus pattern (28 bp):
TGTTATGGCAGTGTGAAAGACACGGGCA
Found at i:10733125 original size:31 final size:30
Alignment explanation
Indices: 10733085--10733152 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 30
10733075 ATAATTTAAG
* *
10733085 ATAAGTATGAAAGATATTTACATTAAATTGA
1 ATAAATATGAAAGATATTTAAATTAAATT-A
* *
10733116 TTAAATATGAAATATATTTAAATTAAATTA
1 ATAAATATGAAAGATATTTAAATTAAATTA
10733146 ATAAATA
1 ATAAATA
10733153 CATTTAATAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 7 0.22
31 25 0.78
ACGTcount: A:0.53, C:0.01, G:0.07, T:0.38
Consensus pattern (30 bp):
ATAAATATGAAAGATATTTAAATTAAATTA
Found at i:10735544 original size:40 final size:39
Alignment explanation
Indices: 10735500--10735604 Score: 122
Period size: 39 Copynumber: 2.6 Consensus size: 39
10735490 AGTGACCATA
*
10735500 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
* *
10735540 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
10735578 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGACTAAG-CCCGAAGGCATTTG
10735605 AACGAGGAGC
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.03
39 32 0.55
40 24 0.41
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:10735561 original size:39 final size:40
Alignment explanation
Indices: 10735460--10735604 Score: 165
Period size: 40 Copynumber: 3.6 Consensus size: 40
10735450 TTGAATGATG
* *
10735460 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATA
*
10735500 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA
*
10735539 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
* *
10735579 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
10735605 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 7, Indels: 14
0.81 0.06 0.12
Matches are distributed among these distances:
39 34 0.37
40 46 0.51
41 10 0.11
42 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
Found at i:10735618 original size:40 final size:39
Alignment explanation
Indices: 10735461--10735623 Score: 100
Period size: 40 Copynumber: 4.1 Consensus size: 39
10735451 TGAATGATGT
** * * *
10735461 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTATAA
* * ** *
10735501 CCGGACTAAGATCCGAAGGCATTTGTGCGAGAT-ACTA-ATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAG-TGACTATA-A
** *
10735541 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTATAA
* *
10735580 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATAT
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTATAA
10735620 CCGG
1 CCGG
10735624 TTAAATTCCG
Statistics
Matches: 103, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
38 1 0.01
39 34 0.33
40 60 0.58
41 8 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTATAA
Found at i:10735623 original size:79 final size:80
Alignment explanation
Indices: 10735460--10735610 Score: 191
Period size: 79 Copynumber: 1.9 Consensus size: 80
10735450 TTGAATGATG
*
10735460 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
**
10735525 GTGCGAGATACTAAT
66 GAACGAGATACTAAT
* * * * *
10735540 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
10735602 TTGAACGAG
64 TTGAACGAG
10735611 GAGCTATATC
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.02
79 42 0.69
80 18 0.30
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGATACTAAT
Found at i:10745645 original size:40 final size:41
Alignment explanation
Indices: 10745549--10745653 Score: 126
Period size: 40 Copynumber: 2.6 Consensus size: 41
10745539 TGAATGATGT
*
10745549 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCATAA
* * * *
10745589 CCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTATAA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGTGACCATAA
*
10745629 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
10745654 AATGAGTAGC
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
39 1 0.02
40 46 0.84
41 8 0.15
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (41 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCATAA
Found at i:10749149 original size:2 final size:2
Alignment explanation
Indices: 10749142--10749171 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
10749132 TGTGGTAAGG
10749142 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10749172 GAAGAATAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10750160 original size:27 final size:27
Alignment explanation
Indices: 10750129--10750183 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
10750119 TTTTTAAGTG
*
10750129 TCAAAAAGGTTCTGAAAGTTCTTGATT
1 TCAAAAAGGTTCTGAAAGTTCTCGATT
10750156 TCAAAAAGGTTCTGAAAGTTCTCGATT
1 TCAAAAAGGTTCTGAAAGTTCTCGATT
10750183 T
1 T
10750184 AGTCTCAAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36
Consensus pattern (27 bp):
TCAAAAAGGTTCTGAAAGTTCTCGATT
Found at i:10750484 original size:13 final size:13
Alignment explanation
Indices: 10750466--10750490 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10750456 AGAGGCAAAC
10750466 AACAAATCAAAAA
1 AACAAATCAAAAA
10750479 AACAAATCAAAA
1 AACAAATCAAAA
10750491 CATTTTTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.76, C:0.16, G:0.00, T:0.08
Consensus pattern (13 bp):
AACAAATCAAAAA
Found at i:10756371 original size:14 final size:16
Alignment explanation
Indices: 10756346--10756377 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
10756336 AGATCCACAT
10756346 ACCAATATATAA-TCA
1 ACCAATATATAATTCA
10756361 ACCAA-ATATAATTCA
1 ACCAATATATAATTCA
10756376 AC
1 AC
10756378 ATATCGTCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.53, C:0.22, G:0.00, T:0.25
Consensus pattern (16 bp):
ACCAATATATAATTCA
Found at i:10765286 original size:1 final size:1
Alignment explanation
Indices: 10765280--10765398 Score: 238
Period size: 1 Copynumber: 119.0 Consensus size: 1
10765270 TGTTTGAAGC
10765280 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
10765345 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
10765399 GAAAGGAATT
Statistics
Matches: 118, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 118 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:10767689 original size:98 final size:96
Alignment explanation
Indices: 10767559--10767753 Score: 313
Period size: 98 Copynumber: 2.0 Consensus size: 96
10767549 CCTTACTTAT
* *
10767559 CTAAATATCTTCCTCAAGTAAACTATGAAATATATTGCATAATATCCTTTAAGAAAGTGCACAAA
1 CTAAATATCTTCCTCAAGTAAACTATGAAATATATTGAATAATATCCCTTAA-AAA-TGCACAAA
10767624 AATAGTCACAATAAT-TGAATCAAAATATGCCAA
64 AATAGTCACAATAATCT-AATCAAAATATGCCAA
*
10767657 CTAAATATCTTCCTCATGTAAA-TAATGAAATATATTGAATAATATCCCTTAAAAATGCACAAAA
1 CTAAATATCTTCCTCAAGTAAACT-ATGAAATATATTGAATAATATCCCTTAAAAATGCACAAAA
10767721 ATAGTCACAATAATCTAATCAAAATATGCCAA
65 ATAGTCACAATAATCTAATCAAAATATGCCAA
10767753 C
1 C
10767754 AAAACAAGCA
Statistics
Matches: 92, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
96 40 0.43
97 5 0.05
98 47 0.51
ACGTcount: A:0.47, C:0.17, G:0.08, T:0.29
Consensus pattern (96 bp):
CTAAATATCTTCCTCAAGTAAACTATGAAATATATTGAATAATATCCCTTAAAAATGCACAAAAA
TAGTCACAATAATCTAATCAAAATATGCCAA
Found at i:10768872 original size:28 final size:28
Alignment explanation
Indices: 10768841--10768899 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
10768831 TAAAACTATC
*
10768841 TAATAAATTAAATTT-GAAAAAATTTAAT
1 TAAT-AATAAAATTTAGAAAAAATTTAAT
* *
10768869 TAATAATAAAATTTAGATAAAATTTTAT
1 TAATAATAAAATTTAGAAAAAATTTAAT
10768897 TAA
1 TAA
10768900 AGTATCTAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 9 0.33
28 18 0.67
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (28 bp):
TAATAATAAAATTTAGAAAAAATTTAAT
Found at i:10777492 original size:55 final size:55
Alignment explanation
Indices: 10777359--10777494 Score: 146
Period size: 55 Copynumber: 2.5 Consensus size: 55
10777349 TATAAGGATC
* * ** * *
10777359 CACGCCCGTGCTGTTTTGGCAGGTTCGTCCACGGTTGCTTGGCACGGGCGTGTTG
1 CACGCCCGTGTTGTTTTGGCAGGTTCGGCCACGGTTGCAAGGCACAGGCGTGTCG
** * * * * *
10777414 CACGCCCGTGTTAATTTGACAGGTTTGGCCAGGGTTTCAAGGCACAGGTGTGTCG
1 CACGCCCGTGTTGTTTTGGCAGGTTCGGCCACGGTTGCAAGGCACAGGCGTGTCG
*
10777469 CACGCCTGTGTTGTTTTGGCAGGTTC
1 CACGCCCGTGTTGTTTTGGCAGGTTC
10777495 ACCCATGGCC
Statistics
Matches: 63, Mismatches: 18, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
55 63 1.00
ACGTcount: A:0.12, C:0.24, G:0.34, T:0.30
Consensus pattern (55 bp):
CACGCCCGTGTTGTTTTGGCAGGTTCGGCCACGGTTGCAAGGCACAGGCGTGTCG
Found at i:10781252 original size:75 final size:75
Alignment explanation
Indices: 10781124--10781273 Score: 291
Period size: 75 Copynumber: 2.0 Consensus size: 75
10781114 AATGTACTCT
10781124 TAGACAGGGTCTATTCCTCCTCTGAATAAGAGCTTAACTTGAATTAATATCCTGGAATATCAAGA
1 TAGACAGGGTCTATTCCTCCTCTGAATAAGAGCTTAACTTGAATTAATATCCTGGAATATCAAGA
10781189 TAAGAATTAA
66 TAAGAATTAA
*
10781199 TAGATAGGGTCTATTCCTCCTCTGAATAAGAGCTTAACTTGAATTAATATCCTGGAATATCAAGA
1 TAGACAGGGTCTATTCCTCCTCTGAATAAGAGCTTAACTTGAATTAATATCCTGGAATATCAAGA
10781264 TAAGAATTAA
66 TAAGAATTAA
10781274 GAACACATAA
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 74 1.00
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.31
Consensus pattern (75 bp):
TAGACAGGGTCTATTCCTCCTCTGAATAAGAGCTTAACTTGAATTAATATCCTGGAATATCAAGA
TAAGAATTAA
Found at i:10784282 original size:45 final size:45
Alignment explanation
Indices: 10784222--10784344 Score: 133
Period size: 46 Copynumber: 2.7 Consensus size: 45
10784212 ATCTCTCCGT
* *
10784222 GCCGATGCCATGTCCCAGACATTGTATTACACTGAC-ACATCTCGTA-
1 GCCGATG-CATGTCCCAGACA-TGTCTTACACTGACTACATCGCG-AG
* * * *
10784268 GCCGATGCATGTCCCCGACATGTCTTACGCTGGCTTACGTCGCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGAC-TACATCGCGAG
*
10784314 GCTGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
10784345 TCCAGACATG
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
44 11 0.17
45 13 0.20
46 41 0.63
ACGTcount: A:0.21, C:0.31, G:0.22, T:0.26
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGACTACATCGCGAG
Found at i:10786083 original size:27 final size:27
Alignment explanation
Indices: 10786045--10786099 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
10786035 TCTACGGGGA
10786045 TACCTTTAAAAACACTCGATCACCGAC
1 TACCTTTAAAAACACTCGATCACCGAC
10786072 TACCTTTAAAAACACTCGATCACCGAC
1 TACCTTTAAAAACACTCGATCACCGAC
10786099 T
1 T
10786100 TGGAATTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.36, C:0.33, G:0.07, T:0.24
Consensus pattern (27 bp):
TACCTTTAAAAACACTCGATCACCGAC
Found at i:10792067 original size:46 final size:46
Alignment explanation
Indices: 10791972--10792141 Score: 134
Period size: 46 Copynumber: 3.7 Consensus size: 46
10791962 CTCGTAGCCG
* * * ** * * *
10791972 ATGCATGTCCCTGACATGTCTTACGCTGGCT-TACGTCGCGAGGCTA
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCT-CGTATCAATGCCA
*
10792018 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTTTCAATGCCA
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTATCAATGCCA
* * *
10792064 ATGCCATGTCCCAAACATGGTCTTACAAT-G-TCTC-TCAT-AATGTGGCCG
1 ATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGT-ATCAA--T-GCCA
10792112 ATGCATGTCCCAGACATGTCTTACACTAGC
1 ATGCATGTCCCAGACATGTCTTACACTAGC
10792142 GCACACATGA
Statistics
Matches: 101, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
45 3 0.03
46 53 0.52
47 30 0.30
48 15 0.15
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTATCAATGCCA
Found at i:10792490 original size:13 final size:13
Alignment explanation
Indices: 10792472--10792508 Score: 74
Period size: 13 Copynumber: 2.8 Consensus size: 13
10792462 CTATACTTGG
10792472 CCCTAAACTTTGC
1 CCCTAAACTTTGC
10792485 CCCTAAACTTTGC
1 CCCTAAACTTTGC
10792498 CCCTAAACTTT
1 CCCTAAACTTT
10792509 TACAAAATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.24, C:0.38, G:0.05, T:0.32
Consensus pattern (13 bp):
CCCTAAACTTTGC
Found at i:10796038 original size:50 final size:50
Alignment explanation
Indices: 10795984--10796111 Score: 148
Period size: 50 Copynumber: 2.6 Consensus size: 50
10795974 ATGAACAAAT
* * * * *
10795984 GAGTTACTTAATGCAAGACTTAATTAAAGATGCACACTTAATTATCATGG
1 GAGTTACATAATGCAAGACATAATTAAAGATGCAAACTTAACTATCATGA
* * * * *
10796034 GAGTTACATAATGCATGTCATCATTTAATATGCAAACTTAACTATCATGA
1 GAGTTACATAATGCAAGACATAATTAAAGATGCAAACTTAACTATCATGA
* *
10796084 GAGTTACATAATGCATGGCATAATTAAA
1 GAGTTACATAATGCAAGACATAATTAAA
10796112 TCATGAACTT
Statistics
Matches: 65, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 65 1.00
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.32
Consensus pattern (50 bp):
GAGTTACATAATGCAAGACATAATTAAAGATGCAAACTTAACTATCATGA
Found at i:10800548 original size:211 final size:216
Alignment explanation
Indices: 10800169--10800565 Score: 615
Period size: 211 Copynumber: 1.8 Consensus size: 216
10800159 GTAAAAAACG
* *
10800169 ACATTATAATAAAAAAAATATAAGCAAAAGTCTAAAATACAATAGAAACCTACACCACTCCAAAC
1 ACATTATAATAAAAAAAACATAAGCAAAAGTCCAAAATACAATAGAAACCTACACCACTCC--AC
* * *
10800234 AAAAAAATAAATAAATAACACAACAAAAGTTCAATTAACCAACAAAAATAACAAACCAAACCAAA
64 --AAAAATAAATAAAGAACACAACAAAAGCTCAATTAACCAACAAAAATAACAAAACAAACCAAA
* *
10800299 CTAATAACAATAACACATTAGCTCAAAAACCATTATAGAATAGTTTAAGTTTCTTCATGAGTCCA
127 CTAATAACAATAACACATCAGCTCAAAAACCATTATAGAATAGTTTAACTTTCTTCATGAGTCCA
10800364 AATAAACAACAAAAACAATACAACA
192 AATAAACAACAAAAACAATACAACA
* *
10800389 ACATTGTAATAAAAAAAACATAAGCAAAAGTCCAAAATACAATAGAAACCTACACCAGT-C-C-A
1 ACATTATAATAAAAAAAACATAAGCAAAAGTCCAAAATACAATAGAAACCTACACCACTCCACAA
* *
10800451 AAA-AAA-AAAGAACACAACAAAAGCTCAATTATCCAACAACAATAACAAAACAAACCAAACTAA
66 AAATAAATAAAGAACACAACAAAAGCTCAATTAACCAACAAAAATAACAAAACAAACCAAACTAA
*
10800514 TAACAATAACACATCAGTTCAAAAACCATTATAGAATAGTTTAACTTTCTTC
131 TAACAATAACACATCAGCTCAAAAACCATTATAGAATAGTTTAACTTTCTTC
10800566 TTGTGCTTCA
Statistics
Matches: 165, Mismatches: 12, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
211 101 0.61
212 3 0.02
213 4 0.02
216 1 0.01
219 1 0.01
220 55 0.33
ACGTcount: A:0.56, C:0.20, G:0.05, T:0.19
Consensus pattern (216 bp):
ACATTATAATAAAAAAAACATAAGCAAAAGTCCAAAATACAATAGAAACCTACACCACTCCACAA
AAATAAATAAAGAACACAACAAAAGCTCAATTAACCAACAAAAATAACAAAACAAACCAAACTAA
TAACAATAACACATCAGCTCAAAAACCATTATAGAATAGTTTAACTTTCTTCATGAGTCCAAATA
AACAACAAAAACAATACAACA
Found at i:10801885 original size:22 final size:22
Alignment explanation
Indices: 10801860--10801906 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
10801850 TTCTTCTTTT
* *
10801860 ACCCGTTGGTTGAATTTTGTCA
1 ACCCGGTGGTTGAATTTTATCA
10801882 ACCCGGTGGTTGAATTTTATCA
1 ACCCGGTGGTTGAATTTTATCA
10801904 ACC
1 ACC
10801907 TCGATGGTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.36
Consensus pattern (22 bp):
ACCCGGTGGTTGAATTTTATCA
Found at i:10803005 original size:30 final size:30
Alignment explanation
Indices: 10802969--10803035 Score: 134
Period size: 30 Copynumber: 2.2 Consensus size: 30
10802959 GTTAAATTAA
10802969 AAATTAATTAATATAATAGTACAATAGCAT
1 AAATTAATTAATATAATAGTACAATAGCAT
10802999 AAATTAATTAATATAATAGTACAATAGCAT
1 AAATTAATTAATATAATAGTACAATAGCAT
10803029 AAATTAA
1 AAATTAA
10803036 AAATAGATAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.33
Consensus pattern (30 bp):
AAATTAATTAATATAATAGTACAATAGCAT
Found at i:10804469 original size:40 final size:41
Alignment explanation
Indices: 10804425--10804516 Score: 105
Period size: 41 Copynumber: 2.3 Consensus size: 41
10804415 TATTATACAT
*
10804425 TAGCGGCGTTTGCAAT-AAAACGCCGCAAAAAATTGAGCAA
1 TAGCGGCGTTTGCAATCAAAACGCCGCAAAAAACTGAGCAA
* **** * *
10804465 TAGCGACGTTTTTGGTCCAAACGCCGCTAAAAACTGAGCAA
1 TAGCGGCGTTTGCAATCAAAACGCCGCAAAAAACTGAGCAA
10804506 TAGCGGCGTTT
1 TAGCGGCGTTT
10804517 TTGGTCCAAA
Statistics
Matches: 42, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
40 11 0.26
41 31 0.74
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.22
Consensus pattern (41 bp):
TAGCGGCGTTTGCAATCAAAACGCCGCAAAAAACTGAGCAA
Found at i:10804497 original size:41 final size:41
Alignment explanation
Indices: 10804442--10804534 Score: 159
Period size: 41 Copynumber: 2.3 Consensus size: 41
10804432 GTTTGCAATA
* *
10804442 AAACGCCGCAAAAAATTGAGCAATAGCGACGTTTTTGGTCC
1 AAACGCCGCTAAAAACTGAGCAATAGCGACGTTTTTGGTCC
*
10804483 AAACGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTGGTCC
1 AAACGCCGCTAAAAACTGAGCAATAGCGACGTTTTTGGTCC
10804524 AAACGCCGCTA
1 AAACGCCGCTA
10804535 TAGATCGAGG
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.32, C:0.25, G:0.23, T:0.20
Consensus pattern (41 bp):
AAACGCCGCTAAAAACTGAGCAATAGCGACGTTTTTGGTCC
Found at i:10804569 original size:41 final size:41
Alignment explanation
Indices: 10804524--10804736 Score: 320
Period size: 41 Copynumber: 5.2 Consensus size: 41
10804514 TTTTTGGTCC
* *
10804524 AAACGCCGCTATAGATCGAGGTTTTAGAGGCGCTTCTGGAA
1 AAACGCCGCTATAGGTCGAGGTTTTAGCGGCGCTTCTGGAA
* *
10804565 AAACGCCACTATAGGTCGAGGTTTTAGCGGCACTTCTGGAA
1 AAACGCCGCTATAGGTCGAGGTTTTAGCGGCGCTTCTGGAA
*
10804606 AAACGCCGCTATAGGTCGAGGTTTTAGCGGCGCTTTTGGAA
1 AAACGCCGCTATAGGTCGAGGTTTTAGCGGCGCTTCTGGAA
* *
10804647 AAACGCCGCTATAGGTCGAGGTTTTAGCGGCGCTTTTGGAG
1 AAACGCCGCTATAGGTCGAGGTTTTAGCGGCGCTTCTGGAA
* * * *
10804688 AAGCGCCGCTATAGATCGAGCTTTTAGCGGCGCTT-TTGAA
1 AAACGCCGCTATAGGTCGAGGTTTTAGCGGCGCTTCTGGAA
10804728 AAACGCCGC
1 AAACGCCGC
10804737 AAAAAATATA
Statistics
Matches: 158, Mismatches: 14, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
40 11 0.07
41 147 0.93
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.25
Consensus pattern (41 bp):
AAACGCCGCTATAGGTCGAGGTTTTAGCGGCGCTTCTGGAA
Found at i:10804905 original size:7 final size:7
Alignment explanation
Indices: 10804893--10805046 Score: 57
Period size: 7 Copynumber: 21.4 Consensus size: 7
10804883 TATCATTATA
10804893 GTTTAGG
1 GTTTAGG
*
10804900 GTTTAGT
1 GTTTAGG
* *
10804907 GTATATG
1 GTTTAGG
10804914 GTTTAGG
1 GTTTAGG
*
10804921 GTTTAAG
1 GTTTAGG
*
10804928 GTTTAAG
1 GTTTAGG
* *
10804935 ATTTAAGA
1 GTTT-AGG
10804943 GTTACTA--
1 GTT--TAGG
* *
10804950 TTTTAAG
1 GTTTAGG
10804957 GTTTATGG
1 GTTTA-GG
10804965 G-TTATGG
1 GTTTA-GG
*
10804972 GTTTAGT
1 GTTTAGG
*
10804979 GTTTATG
1 GTTTAGG
* *
10804986 ATTTATG
1 GTTTAGG
10804993 GTTTAAGG
1 GTTT-AGG
*
10805001 G-TTGGG
1 GTTTAGG
*
10805007 GTTTAAG
1 GTTTAGG
10805014 G-TTAGGG
1 GTTTA-GG
10805021 GTTTAGAG
1 GTTTAG-G
10805029 GTTTAGG
1 GTTTAGG
10805036 GTTTATGG
1 GTTTA-GG
10805044 GTT
1 GTT
10805047 ATATTCTATA
Statistics
Matches: 110, Mismatches: 24, Indels: 25
0.69 0.15 0.16
Matches are distributed among these distances:
5 2 0.02
6 6 0.05
7 74 0.67
8 26 0.24
9 1 0.01
10 1 0.01
ACGTcount: A:0.21, C:0.01, G:0.33, T:0.45
Consensus pattern (7 bp):
GTTTAGG
Found at i:10804930 original size:14 final size:14
Alignment explanation
Indices: 10804893--10805040 Score: 79
Period size: 14 Copynumber: 10.4 Consensus size: 14
10804883 TATCATTATA
* *
10804893 GTTTAGGGTTTAGT
1 GTTTAAGGTTTAGG
* *
10804907 GTATATGGTTTAGG
1 GTTTAAGGTTTAGG
*
10804921 GTTTAAGGTTTAAG
1 GTTTAAGGTTTAGG
*
10804935 ATTTAAGAGTTACTA--
1 GTTTAAG-GTT--TAGG
*
10804950 TTTTAAGGTTTATGG
1 GTTTAAGGTTTA-GG
* *
10804965 G-TTATGGGTTTAGT
1 GTTTA-AGGTTTAGG
* * *
10804979 GTTTATGATTTATG
1 GTTTAAGGTTTAGG
* *
10804993 GTTTAAGGGTTGGG
1 GTTTAAGGTTTAGG
10805007 GTTTAAGG-TTAGGG
1 GTTTAAGGTTTA-GG
10805021 GTTTAGAGGTTTAGG
1 GTTTA-AGGTTTAGG
10805036 GTTTA
1 GTTTA
10805041 TGGGTTATAT
Statistics
Matches: 102, Mismatches: 21, Indels: 21
0.71 0.15 0.15
Matches are distributed among these distances:
12 2 0.02
13 2 0.02
14 65 0.64
15 28 0.27
16 3 0.03
17 2 0.02
ACGTcount: A:0.22, C:0.01, G:0.32, T:0.45
Consensus pattern (14 bp):
GTTTAAGGTTTAGG
Found at i:10804976 original size:22 final size:21
Alignment explanation
Indices: 10804927--10805000 Score: 60
Period size: 22 Copynumber: 3.4 Consensus size: 21
10804917 TAGGGTTTAA
* *
10804927 GGTTTAAGATTTAAGAGTTACT
1 GGTTTAAGGTTTATGAGTTA-T
** *
10804949 ATTTTAAGGTTTATGGGTTAT
1 GGTTTAAGGTTTATGAGTTAT
*
10804970 GGGTTT-AGTGTTTATGATTTAT
1 -GGTTTAAG-GTTTATGAGTTAT
10804992 GGTTTAAGG
1 GGTTTAAGG
10805001 GTTGGGGTTT
Statistics
Matches: 40, Mismatches: 9, Indels: 7
0.71 0.16 0.12
Matches are distributed among these distances:
21 9 0.22
22 31 0.77
ACGTcount: A:0.24, C:0.01, G:0.27, T:0.47
Consensus pattern (21 bp):
GGTTTAAGGTTTATGAGTTAT
Found at i:10808513 original size:93 final size:93
Alignment explanation
Indices: 10808406--10808576 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
10808396 GCCCCTAAGT
* *
10808406 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
10808471 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
10808499 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
10808564 CGAGTTCGGATGC
66 CGAGTTCGGATGC
10808577 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:10808573 original size:46 final size:46
Alignment explanation
Indices: 10808401--10808573 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
10808391 AACCCGCCCC
* * *
10808401 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
10808447 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
10808495 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
10808540 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
10808574 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:10809030 original size:30 final size:30
Alignment explanation
Indices: 10808996--10809055 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
10808986 ATTTAATACG
10808996 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
10809026 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
10809056 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:10816105 original size:93 final size:93
Alignment explanation
Indices: 10815998--10816168 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
10815988 GCCCCTAAGT
* *
10815998 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
10816063 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
10816091 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
10816156 CGAGTTCGGATGC
66 CGAGTTCGGATGC
10816169 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:10816165 original size:46 final size:46
Alignment explanation
Indices: 10815993--10816165 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
10815983 AACCCGCCCC
* * *
10815993 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
10816039 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
10816087 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
10816132 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
10816166 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:10816622 original size:30 final size:30
Alignment explanation
Indices: 10816588--10816647 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
10816578 ATTTAATACG
10816588 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
10816618 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
10816648 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:10818680 original size:3 final size:3
Alignment explanation
Indices: 10818672--10818703 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
10818662 ATTGGTAACA
10818672 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
10818704 ATGTTAAAGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:10820532 original size:24 final size:24
Alignment explanation
Indices: 10820475--10820521 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
10820465 AACCATGATG
10820475 GTTAATTATTACGAGTTTTGTAGT
1 GTTAATTATTACGAGTTTTGTAGT
*
10820499 GTTAATTATTACTAGTTTTGTAG
1 GTTAATTATTACGAGTTTTGTAG
10820522 CTTCTATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.04, G:0.19, T:0.51
Consensus pattern (24 bp):
GTTAATTATTACGAGTTTTGTAGT
Found at i:10820804 original size:43 final size:43
Alignment explanation
Indices: 10820749--10820838 Score: 144
Period size: 43 Copynumber: 2.1 Consensus size: 43
10820739 GTTTTCAAAA
* * *
10820749 AAAAGTGCCGCTAAAGGTCATGATTTTTAGCGGCGTTTGCGGG
1 AAAAGCGCCGCTAAAGGTCATGATCTTTAGCGGCATTTGCGGG
*
10820792 AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCATTTGCGGG
1 AAAAGCGCCGCTAAAGGTCATGATCTTTAGCGGCATTTGCGGG
10820835 AAAA
1 AAAA
10820839 TCTGTAATGC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGGTCATGATCTTTAGCGGCATTTGCGGG
Found at i:10822160 original size:67 final size:67
Alignment explanation
Indices: 10822052--10822185 Score: 268
Period size: 67 Copynumber: 2.0 Consensus size: 67
10822042 CCATTTCACT
10822052 AGAAATTTTACCCGTTGAACACATCGGAATATAACTCGGATACATGGATAATTTGCACATAAGTG
1 AGAAATTTTACCCGTTGAACACATCGGAATATAACTCGGATACATGGATAATTTGCACATAAGTG
10822117 CC
66 CC
10822119 AGAAATTTTACCCGTTGAACACATCGGAATATAACTCGGATACATGGATAATTTGCACATAAGTG
1 AGAAATTTTACCCGTTGAACACATCGGAATATAACTCGGATACATGGATAATTTGCACATAAGTG
10822184 CC
66 CC
10822186 TCATATGTAA
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 67 1.00
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (67 bp):
AGAAATTTTACCCGTTGAACACATCGGAATATAACTCGGATACATGGATAATTTGCACATAAGTG
CC
Found at i:10822709 original size:30 final size:30
Alignment explanation
Indices: 10822675--10822734 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
10822665 CCTTAATACG
10822675 AACTTTGGCAAAATTAC-CATTTTACCCCTA
1 AACTTTGGCAAAATTACAC-TTTTACCCCTA
* * *
10822705 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTACCCCTA
10822735 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTACCCCTA
Found at i:10823571 original size:21 final size:21
Alignment explanation
Indices: 10823547--10823586 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
10823537 ATATATTAAT
10823547 TTTTAAAATATATTAAAAAGG
1 TTTTAAAATATATTAAAAAGG
* * *
10823568 TTTTCAAATTTCTTAAAAA
1 TTTTAAAATATATTAAAAA
10823587 AATAATTAAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.42
Consensus pattern (21 bp):
TTTTAAAATATATTAAAAAGG
Found at i:10824070 original size:8 final size:8
Alignment explanation
Indices: 10824059--10824108 Score: 55
Period size: 8 Copynumber: 5.8 Consensus size: 8
10824049 GACTTTATAA
10824059 AATTTTAT
1 AATTTTAT
10824067 AATTTTAT
1 AATTTTAT
*
10824075 AATTTTTTT
1 AA-TTTTAT
10824084 ATATTTCTAT
1 A-ATTT-TAT
10824094 ATATTTTAT
1 A-ATTTTAT
10824103 AATTTT
1 AATTTT
10824109 TTACGATTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
8 15 0.41
9 13 0.35
10 9 0.24
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (8 bp):
AATTTTAT
Found at i:10824073 original size:18 final size:17
Alignment explanation
Indices: 10824052--10824108 Score: 60
Period size: 18 Copynumber: 3.2 Consensus size: 17
10824042 TTCTTATGAC
10824052 TTTATAAAATTTTATAAT
1 TTTAT-AAATTTTATAAT
* *
10824070 TTTATAATTTTTTTATAT
1 TTTATAAATTTTATA-AT
*
10824088 TTCTATATATTTTATAAT
1 TT-TATAAATTTTATAAT
10824106 TTT
1 TTT
10824109 TTACGATTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
17 9 0.28
18 13 0.41
19 10 0.31
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTATAAATTTTATAAT
Found at i:10824073 original size:37 final size:36
Alignment explanation
Indices: 10824032--10824108 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 36
10824022 TTCTTTACGT
10824032 TTTTATAATTTTCTTATGACTTTATA-AAATTTTATAA
1 TTTTATAATTTTCTTAT-A-TTTATATAAATTTTATAA
* * *
10824069 TTTTATAATTTTTTTATATTTCTATATATTTTATAA
1 TTTTATAATTTTCTTATATTTATATAAATTTTATAA
10824105 TTTT
1 TTTT
10824109 TTACGATTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
35 5 0.14
36 15 0.42
37 16 0.44
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (36 bp):
TTTTATAATTTTCTTATATTTATATAAATTTTATAA
Found at i:10824082 original size:10 final size:10
Alignment explanation
Indices: 10824031--10824188 Score: 77
Period size: 10 Copynumber: 16.6 Consensus size: 10
10824021 TTTCTTTACG
10824031 TTTTTATAAT
1 TTTTTATAAT
*
10824041 TTTCTTATGA-
1 TTT-TTATAAT
* *
10824051 -CTTTATAAA
1 TTTTTATAAT
*
10824060 ATTTTATAA-
1 TTTTTATAAT
10824069 -TTTTATAAT
1 TTTTTATAAT
10824078 TTTTT-T-AT
1 TTTTTATAAT
*
10824086 ATTTCTAT-AT
1 -TTTTTATAAT
*
10824096 ATTTTATAAT
1 TTTTTATAAT
**
10824106 TTTTTACGA-
1 TTTTTATAAT
*
10824115 TTTTTATAAA
1 TTTTTATAAT
** *
10824125 AATTTACAAT
1 TTTTTATAAT
10824135 TTTTTAT-AT
1 TTTTTATAAT
*
10824144 TTTTTATGA-
1 TTTTTATAAT
10824153 TTTTTAT-AT
1 TTTTTATAAT
10824162 ATTTTTATAAT
1 -TTTTTATAAT
* *
10824173 TTTTAATAAA
1 TTTTTATAAT
10824183 TTTTTA
1 TTTTTA
10824189 ATATTTGAAT
Statistics
Matches: 113, Mismatches: 22, Indels: 26
0.70 0.14 0.16
Matches are distributed among these distances:
8 16 0.14
9 34 0.30
10 56 0.50
11 7 0.06
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:10824086 original size:19 final size:19
Alignment explanation
Indices: 10823991--10824176 Score: 87
Period size: 19 Copynumber: 9.8 Consensus size: 19
10823981 TGGCACGATA
10823991 AATTTTATAATTTTTTTTACT
1 AATTTTATAA-TTTTTTTA-T
** * *
10824012 AAACTTAT-ATTTCTTTAC
1 AATTTTATAATTTTTTTAT
** *
10824030 GTTTTTATAATTTTCTTAT
1 AATTTTATAATTTTTTTAT
* * **
10824049 GACTTTATAA-AATTTTAT
1 AATTTTATAATTTTTTTAT
10824067 AATTTTATAATTTTTTTAT
1 AATTTTATAATTTTTTTAT
*
10824086 -ATTTCTAT-A-TATTTTAT
1 AATTT-TATAATTTTTTTAT
* * *
10824103 AATTTTTTACGATTTTTATAA
1 AATTTTATA--ATTTTTTTAT
* *
10824124 AAATTTACAA-TTTTTTAT
1 AATTTTATAATTTTTTTAT
* * *
10824142 ATTTTTTATGATTTTTATAT
1 A-ATTTTATAATTTTTTTAT
*
10824162 ATTTTTATAATTTTT
1 AATTTTATAATTTTT
10824177 AATAAATTTT
Statistics
Matches: 119, Mismatches: 36, Indels: 22
0.67 0.20 0.12
Matches are distributed among these distances:
17 9 0.08
18 33 0.28
19 50 0.42
20 10 0.08
21 17 0.14
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (19 bp):
AATTTTATAATTTTTTTAT
Found at i:10824174 original size:38 final size:39
Alignment explanation
Indices: 10824097--10824188 Score: 114
Period size: 38 Copynumber: 2.4 Consensus size: 39
10824087 TTTCTATATA
10824097 TTTTATAATTTTTTACGATTTTTATAAAAATTTACAATT
1 TTTTATAATTTTTTACGATTTTTATAAAAATTTACAATT
* * ** *
10824136 TTTTAT-ATTTTTTATGATTTTTATATATTTTTATAATT
1 TTTTATAATTTTTTACGATTTTTATAAAAATTTACAATT
* *
10824174 TTTAATAAATTTTTA
1 TTTTATAATTTTTTA
10824189 ATATTTGAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
38 32 0.71
39 13 0.29
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (39 bp):
TTTTATAATTTTTTACGATTTTTATAAAAATTTACAATT
Found at i:10824177 original size:19 final size:19
Alignment explanation
Indices: 10824031--10824188 Score: 98
Period size: 19 Copynumber: 8.3 Consensus size: 19
10824021 TTTCTTTACG
10824031 TTTTTATAATTTTCT-TATGA
1 TTTTTATAATTTT-TATAT-A
* *
10824051 -CTTTATAAAATTTTATA-A
1 TTTTTAT-AATTTTTATATA
*
10824069 -TTTTATAATTTTTTTATA
1 TTTTTATAATTTTTATATA
*
10824087 TTTCTAT-ATATTTTATA-A
1 TTTTTATAAT-TTTTATATA
*
10824105 TTTTT-TACGATTTTTATAAA
1 TTTTTATA--ATTTTTATATA
** *
10824125 AATTTACAATTTTT-TATA
1 TTTTTATAATTTTTATATA
*
10824143 TTTTTTATGATTTTTATATA
1 -TTTTTATAATTTTTATATA
*
10824163 TTTTTATAATTTTTAATAAA
1 TTTTTATAATTTTT-ATATA
10824183 TTTTTA
1 TTTTTA
10824189 ATATTTGAAT
Statistics
Matches: 107, Mismatches: 18, Indels: 26
0.71 0.12 0.17
Matches are distributed among these distances:
17 9 0.08
18 17 0.16
19 53 0.50
20 27 0.25
21 1 0.01
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (19 bp):
TTTTTATAATTTTTATATA
Found at i:10824323 original size:22 final size:22
Alignment explanation
Indices: 10824283--10824329 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
10824273 CCTTAATTGT
*
10824283 ATTTTTTTGAAAAAGTTTGAGA
1 ATTTTTTTGAAAAAGTTTGAAA
* * *
10824305 ATTTTTTTGATACATTTTGAAA
1 ATTTTTTTGAAAAAGTTTGAAA
10824327 ATT
1 ATT
10824330 CAAGTACCGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.02, G:0.13, T:0.51
Consensus pattern (22 bp):
ATTTTTTTGAAAAAGTTTGAAA
Found at i:10826925 original size:21 final size:20
Alignment explanation
Indices: 10826891--10826929 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
10826881 TCTTTTAATC
*
10826891 TTTTAAAAGTTATTAAAAGT
1 TTTTAAAAGCTATTAAAAGT
10826911 TTTTAGAAAGCTATTAAAA
1 TTTTA-AAAGCTATTAAAA
10826930 TTGAGTTGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.46, C:0.03, G:0.10, T:0.41
Consensus pattern (20 bp):
TTTTAAAAGCTATTAAAAGT
Found at i:10834251 original size:34 final size:34
Alignment explanation
Indices: 10834192--10834265 Score: 89
Period size: 33 Copynumber: 2.2 Consensus size: 34
10834182 AAAAATTGTA
*
10834192 CTTCCCCACAAACCTCAAAACTTTTTT-TTTTAC
1 CTTCCCCACAAACCCCAAAACTTTTTTCTTTTAC
*
10834225 CTTCCCC-CAAACCCCCCAAACTTTTTTTCTTTTAC
1 CTTCCCCACAAA-CCCCAAAAC-TTTTTTCTTTTAC
*
10834260 TTTCCC
1 CTTCCC
10834266 TTCAAAAATT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
32 4 0.11
33 14 0.40
34 6 0.17
35 11 0.31
ACGTcount: A:0.22, C:0.39, G:0.00, T:0.39
Consensus pattern (34 bp):
CTTCCCCACAAACCCCAAAACTTTTTTCTTTTAC
Found at i:10834705 original size:19 final size:19
Alignment explanation
Indices: 10834681--10834718 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
10834671 AAGTTAATAA
10834681 CAAATTTGATTATGATGGG
1 CAAATTTGATTATGATGGG
*
10834700 CAAATTTGATTATGGTGGG
1 CAAATTTGATTATGATGGG
10834719 TGGCAGTGGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.05, G:0.29, T:0.37
Consensus pattern (19 bp):
CAAATTTGATTATGATGGG
Found at i:10837341 original size:29 final size:29
Alignment explanation
Indices: 10837299--10837357 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
10837289 TCACTATGAT
10837299 TATACTATTGTTCGATAGGTGTGCTTGCC
1 TATACTATTGTTCGATAGGTGTGCTTGCC
10837328 TATACTATTGTTCGATAGGTGTGCTTGCC
1 TATACTATTGTTCGATAGGTGTGCTTGCC
10837357 T
1 T
10837358 TAGTCGTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.17, C:0.17, G:0.24, T:0.42
Consensus pattern (29 bp):
TATACTATTGTTCGATAGGTGTGCTTGCC
Found at i:10843162 original size:85 final size:85
Alignment explanation
Indices: 10843026--10843194 Score: 302
Period size: 85 Copynumber: 2.0 Consensus size: 85
10843016 GGGTCACATG
*
10843026 GCCAACCACACGCCCCTGTGTCTAGCCCGTGTACCCTTCGAAATGGCCACACACGCCCATATGCC
1 GCCAACCACACACCCCTGTGTCTAGCCCGTGTACCCTTCGAAATGGCCACACACGCCCATATGCC
*
10843091 AAGGCTGTGTGCCTCACACA
66 AAGGCTGTGTACCTCACACA
* *
10843111 GCCAACCATACACCCGTGTGTCTAGCCCGTGTACCCTTCGAAATGGCCACACACGCCCATATGCC
1 GCCAACCACACACCCCTGTGTCTAGCCCGTGTACCCTTCGAAATGGCCACACACGCCCATATGCC
10843176 AAGGCTGTGTACCTCACAC
66 AAGGCTGTGTACCTCACAC
10843195 GGTTACCAGA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 80 1.00
ACGTcount: A:0.23, C:0.39, G:0.20, T:0.18
Consensus pattern (85 bp):
GCCAACCACACACCCCTGTGTCTAGCCCGTGTACCCTTCGAAATGGCCACACACGCCCATATGCC
AAGGCTGTGTACCTCACACA
Found at i:10848532 original size:13 final size:14
Alignment explanation
Indices: 10848514--10848542 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
10848504 AAAACAAAAT
10848514 AAAAATAAAA-TAA
1 AAAAATAAAATTAA
10848527 AAAAATAAAATTAA
1 AAAAATAAAATTAA
10848541 AA
1 AA
10848543 TGTGATAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (14 bp):
AAAAATAAAATTAA
Found at i:10850031 original size:43 final size:43
Alignment explanation
Indices: 10849876--10850032 Score: 144
Period size: 43 Copynumber: 3.7 Consensus size: 43
10849866 TGTGTTATCG
* * *
10849876 TGTAAGACCACGTTTGGGACGTTGGCA-CTGACT-TATGATTTACA
1 TGTAAGACCACGTCTGGGATGTTGGCATC-GA-TATTTGA-TTACA
* * * ***
10849920 TGTAAGACCATGTTTGGGATGTTGACATC-ATATTTGATTTTG
1 TGTAAGACCACGTCTGGGATGTTGGCATCGATATTTGATTACA
*
10849962 TGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGA-TGTTGGCATCGATATTTGATTACA
10850005 TGTAAGACCACGTCTGGGATGTTGGCAT
1 TGTAAGACCACGTCTGGGATGTTGGCAT
10850033 TGTACTAGCT
Statistics
Matches: 91, Mismatches: 15, Indels: 15
0.75 0.12 0.12
Matches are distributed among these distances:
42 26 0.29
43 39 0.43
44 25 0.27
45 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGATGTTGGCATCGATATTTGATTACA
Found at i:10859556 original size:39 final size:40
Alignment explanation
Indices: 10859461--10859683 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
10859451 TTGAATGATG
*
10859461 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
10859499 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
10859540 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
10859579 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
10859618 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
10859657 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
10859684 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
39 93 0.57
40 59 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:10859647 original size:79 final size:81
Alignment explanation
Indices: 10859461--10859683 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
10859451 TTGAATGATG
* * *
10859461 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAGACCCGAAGGCAT
*
10859523 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAA
10859540 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
*
10859601 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAA
* * * * *
10859618 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
10859682 TG
66 TG
10859684 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:10859705 original size:79 final size:79
Alignment explanation
Indices: 10859461--10859716 Score: 217
Period size: 79 Copynumber: 3.3 Consensus size: 79
10859451 TTGAATGATG
* * * *
10859461 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
10859522 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
10859540 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
10859604 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
*
10859618 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
10859681 TTGAACGAG-GAGCTATA
63 TTGAACGAGTGA-CTAAA
* *
10859698 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
10859717 TACGTGATTT
Statistics
Matches: 153, Mismatches: 14, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
77 1 0.01
78 46 0.30
79 69 0.45
80 36 0.24
81 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:10862058 original size:34 final size:34
Alignment explanation
Indices: 10862020--10862087 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
10862010 CATTGAACAA
10862020 AGATAAGCCCTAATTCCAAAAATAACAAAAATTG
1 AGATAAGCCCTAATTCCAAAAATAACAAAAATTG
*
10862054 AGATAGGCCCTAATTCCAAAAATAACAAAAATTG
1 AGATAAGCCCTAATTCCAAAAATAACAAAAATTG
10862088 CTAAGTAAAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.51, C:0.18, G:0.10, T:0.21
Consensus pattern (34 bp):
AGATAAGCCCTAATTCCAAAAATAACAAAAATTG
Found at i:10863552 original size:34 final size:32
Alignment explanation
Indices: 10863501--10863573 Score: 85
Period size: 34 Copynumber: 2.2 Consensus size: 32
10863491 GATAATTGTT
10863501 TTTATTTGTTTCCTTTTTAATT-TTATTTTATG
1 TTTATTTGTTTCCTTTTTAATTATT-TTTTATG
* * *
10863533 TTTATGTTTTTTCCATTTTTAGTTATTTTTTATT
1 TTTAT-TTGTTTCC-TTTTTAATTATTTTTTATG
10863567 TTTATTT
1 TTTATTT
10863574 TCTTGTACTT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
32 5 0.14
33 9 0.26
34 19 0.54
35 2 0.06
ACGTcount: A:0.15, C:0.05, G:0.05, T:0.74
Consensus pattern (32 bp):
TTTATTTGTTTCCTTTTTAATTATTTTTTATG
Found at i:10863789 original size:30 final size:30
Alignment explanation
Indices: 10863755--10863814 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
10863745 AATTTCATCC
*
10863755 AATATTCAGGGCAGTTTCAGTTTTCTCCTT
1 AATATTCAAGGCAGTTTCAGTTTTCTCCTT
10863785 AATATTCAAGGCAGTTTCAGTTTTCTCCTT
1 AATATTCAAGGCAGTTTCAGTTTTCTCCTT
10863815 CTCTTATGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.22, C:0.20, G:0.15, T:0.43
Consensus pattern (30 bp):
AATATTCAAGGCAGTTTCAGTTTTCTCCTT
Found at i:10864211 original size:15 final size:15
Alignment explanation
Indices: 10864191--10864220 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
10864181 GAGATTTTGA
10864191 GCCTTTAGAGCATAC
1 GCCTTTAGAGCATAC
*
10864206 GCCTTTTGAGCATAC
1 GCCTTTAGAGCATAC
10864221 ATTTTTCTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (15 bp):
GCCTTTAGAGCATAC
Found at i:10865531 original size:30 final size:30
Alignment explanation
Indices: 10865446--10865531 Score: 91
Period size: 30 Copynumber: 2.9 Consensus size: 30
10865436 GGTCATTTTA
* *
10865446 ACACGGGCTGGTCACATGCCCGTGTGATCC
1 ACACGGGCTGGCCACATGCCCATGTGATCC
* * ** *
10865476 ACATGGGTTGGCCACACACCTATGTGATCC
1 ACACGGGCTGGCCACATGCCCATGTGATCC
* *
10865506 TCACGGGCTGGCCAGATGCCCATGTG
1 ACACGGGCTGGCCACATGCCCATGTG
10865532 CCAGCCCTTG
Statistics
Matches: 42, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.19, C:0.31, G:0.29, T:0.21
Consensus pattern (30 bp):
ACACGGGCTGGCCACATGCCCATGTGATCC
Found at i:10870497 original size:6 final size:6
Alignment explanation
Indices: 10870479--10870535 Score: 55
Period size: 6 Copynumber: 9.3 Consensus size: 6
10870469 AAGAAACATT
* *
10870479 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
10870528 ATCAGA AT
1 ATCAGA AT
10870536 GTGAATGCAA
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
5 3 0.07
6 34 0.81
7 4 0.10
8 1 0.02
ACGTcount: A:0.49, C:0.16, G:0.16, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:10870732 original size:27 final size:27
Alignment explanation
Indices: 10870678--10870742 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
10870668 AGTAAGTTAA
* *
10870678 GGCAAAGCCTCCAGAACAGATATTTGT
1 GGCAAAGCCACCAGAACAGATATATGT
*
10870705 GGCATAGCCACCAGAATCAGATA-ATGT
1 GGCAAAGCCACCAGAA-CAGATATATGT
*
10870732 GTCAAAGCCAC
1 GGCAAAGCCAC
10870743 TTAACAGAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 26 0.81
28 6 0.19
ACGTcount: A:0.35, C:0.25, G:0.22, T:0.18
Consensus pattern (27 bp):
GGCAAAGCCACCAGAACAGATATATGT
Found at i:10870906 original size:27 final size:27
Alignment explanation
Indices: 10870866--10870917 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
10870856 GTCGTCAAAA
*
10870866 AAATATGTTAGGCAC-ATAGCCATAGGT
1 AAATACGTTAGGCACGA-AGCCATAGGT
*
10870893 AAATACGTTTGGCACGAAGCCATAG
1 AAATACGTTAGGCACGAAGCCATAG
10870918 TCAAGATGGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (27 bp):
AAATACGTTAGGCACGAAGCCATAGGT
Found at i:10871168 original size:32 final size:32
Alignment explanation
Indices: 10871127--10871188 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
10871117 CGTACGAAAT
*
10871127 CCCAACCCATGCAACATGTTATGTATGCAGGA
1 CCCAACCCATGCAACATGTCATGTATGCAGGA
10871159 CCCAACCCATGCAACATGTCATGTATGCAG
1 CCCAACCCATGCAACATGTCATGTATGCAG
10871189 AATGTCATGC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.31, C:0.31, G:0.18, T:0.21
Consensus pattern (32 bp):
CCCAACCCATGCAACATGTCATGTATGCAGGA
Found at i:10871397 original size:27 final size:27
Alignment explanation
Indices: 10871339--10872263 Score: 1055
Period size: 27 Copynumber: 34.3 Consensus size: 27
10871329 GGGACAAAAT
* * * *
10871339 GGTAATTTTACCCCATAAGGGTATCTT-
1 GGTAATTCTACCCTACAGGGGTAT-TTC
*
10871366 GGTAATTCTACCCTACAGGGGCATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
10871393 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
10871420 GGTAATTCTACCCTACAGGTGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
10871447 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
10871474 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
10871501 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
10871528 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
10871555 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
10871582 AGTAATTCTACCCTACAGGTGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * * *
10871609 AGTATTTCTACCCTACAAGGGTATATA
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
10871636 GATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
10871663 AGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
10871690 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * * *** ****
10871717 GATAATTTTGCCCTGTTCTA-CCCTACAGG
1 GGTAATTCTACCC--TAC-AGGGGTATTTC
***
10871746 GGT-ATT-T-TGGTA-A----T-TTTGC
1 GGTAATTCTACCCTACAGGGGTATTT-C
** *
10871765 CCT-GTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
10871791 GATAATTCTACTCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
10871818 GGTATTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
10871845 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
10871872 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
10871899 GGTAATTTTACCCTATAGGCTATAGGGGTATTTC
1 GGTAATTCTACCC--TA--C---AGGGGTATTTC
* *
10871933 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
10871960 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
10871987 GGTATTTCTACCCTATAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
10872014 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
10872041 GATAGTTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
10872068 GGTATTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
10872095 GGTAATTCTACCATACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
10872122 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
10872149 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
10872176 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
10872203 GATAATTCTACCCTATAGGGGTAATCC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
10872230 GGTAATTCTACCCTATAGAGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
10872257 GGTAATT
1 GGTAATT
10872264 TTGTAAATCG
Statistics
Matches: 768, Mismatches: 109, Indels: 42
0.84 0.12 0.05
Matches are distributed among these distances:
19 4 0.01
20 1 0.00
21 2 0.00
22 2 0.00
24 1 0.00
26 5 0.01
27 716 0.93
28 3 0.00
29 8 0.01
30 2 0.00
32 2 0.00
34 22 0.03
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:10871745 original size:37 final size:37
Alignment explanation
Indices: 10871695--10871797 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
10871685 ATTCCGATAA
10871695 TTCTACCCTACAGGGGTATTTCGATAATTTTGCCCTG
1 TTCTACCCTACAGGGGTATTTCGATAATTTTGCCCTG
* *
10871732 TTCTACCCTACAGGGGTATTTTGGTAATTTTGCCCTG
1 TTCTACCCTACAGGGGTATTTCGATAATTTTGCCCTG
10871769 TTCTACCCTACAGGGGTATTTCGATAATT
1 TTCTACCCTACAGGGGTATTTCGATAATT
10871798 CTACTCTACA
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.19, C:0.22, G:0.19, T:0.39
Consensus pattern (37 bp):
TTCTACCCTACAGGGGTATTTCGATAATTTTGCCCTG
Found at i:10872333 original size:27 final size:26
Alignment explanation
Indices: 10872303--10872588 Score: 198
Period size: 27 Copynumber: 10.6 Consensus size: 26
10872293 GTAAATCAAT
* *
10872303 GGTACTTTGATAATTTTACAAGTCGAG
1 GGTATTTTGATAATTTTACAA-ACGAG
** **
10872330 GGTATTTCAATAATTTTACAGGTCGAG
1 GGTATTTTGATAATTTTACA-AACGAG
* *
10872357 GGTATTTT-AGTAATTTCACAAACCAG
1 GGTATTTTGA-TAATTTTACAAACGAG
* *
10872383 GGATATTTTGGTAATTTTACAAACTAGG
1 GG-TATTTTGATAATTTTACAAACGA-G
*
10872411 GGTATTTTGATAATTTTACAAACAAGG
1 GGTATTTTGATAATTTTACAAACGA-G
* *
10872438 GGTATTTTGGTAATTTTACAAACCAGG
1 GGTATTTTGATAATTTTACAAACGA-G
* ** * *
10872465 GGTATTTTGGTAATTTTGTAAACCAAT
1 GGTATTTTGATAATTTTACAAA-CGAG
* * *
10872492 GGTGTTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGATAATTTTACAAACGA-G
* * * *
10872519 GGTATTTTGGTGATTTTATAAACCAAG
1 GGTATTTTGATAATTTTACAAA-CGAG
* *
10872546 GGTATTTT-AGTGATTTTACAAACCAAG
1 GGTATTTTGA-TAATTTTACAAA-CGAG
*
10872573 GGTATTTTGGTAATTT
1 GGTATTTTGATAATTT
10872589 GGTAAACTAA
Statistics
Matches: 216, Mismatches: 33, Indels: 20
0.80 0.12 0.07
Matches are distributed among these distances:
26 8 0.04
27 201 0.93
28 7 0.03
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (26 bp):
GGTATTTTGATAATTTTACAAACGAG
Found at i:10872398 original size:81 final size:81
Alignment explanation
Indices: 10872308--10872579 Score: 235
Period size: 81 Copynumber: 3.4 Consensus size: 81
10872298 TCAATGGTAC
* * ** *
10872308 TTTGATAATTTTACAAGTCGA-GGGTATTTCAATAATTTTACAGGTCGA-GGGTATTTTAGTAAT
1 TTTGGTAATTTTACAA-ACGAGGGGTATTTCAATAATTTTACA-AACAAGGGGTATTTTAGTAAT
10872371 TTCACAAACCAGGGATAT
64 TTCACAAACCAGGGATAT
* ** *
10872389 TTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACAAGGGGTATTTTGGTAATTT
1 TTTGGTAATTTTACAAACGAGGGGTATTTCAATAATTTTACAAACAAGGGGTATTTTAGTAATTT
* *
10872454 TACAAACCAGGGGTAT
66 CACAAACCAGGGATAT
** * ** * *** * * *
10872470 TTTGGTAATTTTGTAAACCAATGGTGTTTTGGTAATTTTACAAACTAGGGGTATTTTGGTGATTT
1 TTTGGTAATTTTACAAACGAGGGGTATTTCAATAATTTTACAAACAAGGGGTATTTTAGTAATTT
* *
10872535 TATAAACCAAGGG-TAT
66 CACAAACC-AGGGATAT
* * * *
10872551 TTTAGTGATTTTACAAACCAAGGGTATTT
1 TTTGGTAATTTTACAAACGAGGGGTATTT
10872580 TGGTAATTTG
Statistics
Matches: 161, Mismatches: 27, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
80 4 0.02
81 153 0.95
82 4 0.02
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (81 bp):
TTTGGTAATTTTACAAACGAGGGGTATTTCAATAATTTTACAAACAAGGGGTATTTTAGTAATTT
CACAAACCAGGGATAT
Found at i:10872595 original size:27 final size:27
Alignment explanation
Indices: 10872355--10872588 Score: 292
Period size: 27 Copynumber: 8.7 Consensus size: 27
10872345 TTACAGGTCG
* *
10872355 AGGGTATTTTAGTAATTTCACAAACC-
1 AGGGTATTTTGGTAATTTTACAAACCA
*
10872381 AGGGATATTTTGGTAATTTTACAAACTA
1 AGGG-TATTTTGGTAATTTTACAAACCA
* *
10872409 GGGGTATTTTGATAATTTTACAAA-CA
1 AGGGTATTTTGGTAATTTTACAAACCA
10872435 AGGGGTATTTTGGTAATTTTACAAACCA
1 A-GGGTATTTTGGTAATTTTACAAACCA
* **
10872463 GGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* * *
10872490 ATGGTGTTTTGGTAATTTTACAAACTA
1 AGGGTATTTTGGTAATTTTACAAACCA
* * *
10872517 GGGGTATTTTGGTGATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
10872544 AGGGTATTTTAGTGATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
10872571 AGGGTATTTTGGTAATTT
1 AGGGTATTTTGGTAATTT
10872589 GGTAAACTAA
Statistics
Matches: 176, Mismatches: 28, Indels: 7
0.83 0.13 0.03
Matches are distributed among these distances:
26 5 0.03
27 166 0.94
28 5 0.03
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAACCA
Found at i:10873829 original size:24 final size:24
Alignment explanation
Indices: 10873800--10873852 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
10873790 TATCATTATT
10873800 GAAGAACACAACATATCACTGGTA
1 GAAGAACACAACATATCACTGGTA
*
10873824 GAAGAACACAACATATCACTTGTA
1 GAAGAACACAACATATCACTGGTA
10873848 GAAGA
1 GAAGA
10873853 CACTAGTATC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.47, C:0.19, G:0.17, T:0.17
Consensus pattern (24 bp):
GAAGAACACAACATATCACTGGTA
Found at i:10881202 original size:18 final size:17
Alignment explanation
Indices: 10881162--10881214 Score: 54
Period size: 18 Copynumber: 3.1 Consensus size: 17
10881152 TCGAAAGACA
* *
10881162 TTATTATGAGT-TAAAG
1 TTATTATGATTGTGAAG
*
10881178 TTGTTATGATTGATGAAG
1 TTATTATGATTG-TGAAG
*
10881196 TTATTATGCTTGTGAAG
1 TTATTATGATTGTGAAG
10881213 TT
1 TT
10881215 TGAATGGTCT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
16 9 0.30
17 7 0.23
18 14 0.47
ACGTcount: A:0.28, C:0.02, G:0.23, T:0.47
Consensus pattern (17 bp):
TTATTATGATTGTGAAG
Found at i:10881213 original size:17 final size:18
Alignment explanation
Indices: 10881175--10881214 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
10881165 TTATGAGTTA
*
10881175 AAGTTGTTATGATTGATG
1 AAGTTATTATGATTGATG
*
10881193 AAGTTATTATGCTTG-TG
1 AAGTTATTATGATTGATG
10881210 AAGTT
1 AAGTT
10881215 TGAATGGTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.28, C:0.03, G:0.25, T:0.45
Consensus pattern (18 bp):
AAGTTATTATGATTGATG
Found at i:10897265 original size:8 final size:8
Alignment explanation
Indices: 10897254--10897282 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
10897244 TGAAGTGATC
10897254 AAGTGGTT
1 AAGTGGTT
10897262 AAGTGGTT
1 AAGTGGTT
10897270 AAGTGGTT
1 AAGTGGTT
10897278 AAGTG
1 AAGTG
10897283 CTTCTATGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.38, T:0.34
Consensus pattern (8 bp):
AAGTGGTT
Found at i:10899930 original size:70 final size:70
Alignment explanation
Indices: 10899830--10900021 Score: 246
Period size: 70 Copynumber: 2.8 Consensus size: 70
10899820 AATTGATGAG
* * * * *
10899830 TTGTTATATTAAAAATGTCTTCATTTACGTTCGA-TTTAAATGCTTAATGTGTTGCTGTAAAGTG
1 TTGTTATCTTAAAAATGTGTTCATTTACGTTCAATTTTAAATGCTTAATGTGCTGCTGTAAAGGG
10899894 CTAAT
66 CTAAT
* * *
10899899 TTGTTATCTTAAAAAATGTGTTCACTCACGTT-AATTTTAGATGCTTAATGTGCTGCTGTAAAGG
1 TTGTTATCTT-AAAAATGTGTTCATTTACGTTCAATTTTAAATGCTTAATGTGCTGCTGTAAAGG
*
10899963 GCTGAT
65 GCTAAT
* * *
10899969 TTGTTGTCTTGAAAATGTGTTCATTTACG-TCCATTTTAAATGCTTAATGTGCT
1 TTGTTATCTTAAAAATGTGTTCATTTACGTTCAATTTTAAATGCTTAATGTGCT
10900022 TTCTAGAAAT
Statistics
Matches: 105, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
68 1 0.01
69 46 0.44
70 58 0.55
ACGTcount: A:0.27, C:0.12, G:0.18, T:0.44
Consensus pattern (70 bp):
TTGTTATCTTAAAAATGTGTTCATTTACGTTCAATTTTAAATGCTTAATGTGCTGCTGTAAAGGG
CTAAT
Found at i:10907874 original size:40 final size:40
Alignment explanation
Indices: 10907819--10908780 Score: 1664
Period size: 40 Copynumber: 24.1 Consensus size: 40
10907809 GATGATAACG
* *
10907819 GGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACTA-ATTCC
1 GGGCTAAGTCCTGAAGGCATTTGTG-TGAGTTACTATA-TCC
* *
10907859 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATA-TCC
*
10907899 GGGCTAAGTTCC-GAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAG-TCCTGAAGGCATTTGTGTGAGTTACTATATCC
* * **
10907939 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
10907979 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
10908019 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
10908059 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
10908099 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
10908139 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
10908179 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
10908219 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
10908259 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
10908299 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
10908339 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
10908379 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
10908419 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
10908459 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
10908499 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
10908539 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
10908579 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
10908619 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
* * **
10908659 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
* * **
10908699 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
* * *
10908739 GGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTA-CTATATCC
10908779 GG
1 GG
10908781 TTAAAGCCCG
Statistics
Matches: 903, Mismatches: 14, Indels: 10
0.97 0.02 0.01
Matches are distributed among these distances:
39 5 0.01
40 894 0.99
41 4 0.00
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (40 bp):
GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
Found at i:10915223 original size:100 final size:100
Alignment explanation
Indices: 10915050--10915250 Score: 393
Period size: 100 Copynumber: 2.0 Consensus size: 100
10915040 GTCTAAAATA
10915050 TGTGAATATGAATGTGTGAAAGTTTTAAGCTTCGATTTAGTTAATTGCATGTGAATTTAGTTAAT
1 TGTGAATATGAATGTGTGAAAGTTTTAAGCTTCGATTTAGTTAATTGCATGTGAATTTAGTTAAT
10915115 AGGACTTATGTGTGACACTTTTGAAATGTGATAGG
66 AGGACTTATGTGTGACACTTTTGAAATGTGATAGG
*
10915150 TGTGAATATGAATTTGTGAAAGTTTTAAGCTTCGATTTAGTTAATTGCATGTGAATTTAGTTAAT
1 TGTGAATATGAATGTGTGAAAGTTTTAAGCTTCGATTTAGTTAATTGCATGTGAATTTAGTTAAT
10915215 AGGACTTATGTGTGACACTTTTGAAATGTGATAGG
66 AGGACTTATGTGTGACACTTTTGAAATGTGATAGG
10915250 T
1 T
10915251 TAATCTATAA
Statistics
Matches: 100, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
100 100 1.00
ACGTcount: A:0.30, C:0.06, G:0.23, T:0.41
Consensus pattern (100 bp):
TGTGAATATGAATGTGTGAAAGTTTTAAGCTTCGATTTAGTTAATTGCATGTGAATTTAGTTAAT
AGGACTTATGTGTGACACTTTTGAAATGTGATAGG
Found at i:10915399 original size:40 final size:40
Alignment explanation
Indices: 10915344--10916305 Score: 1689
Period size: 40 Copynumber: 24.1 Consensus size: 40
10915334 GATGATAACG
* * *
10915344 GGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACTA-ATTTC
1 GGGCTAAGTCCTGAAGGCATTTGTG-TGAGTTACTATA-TCC
*
10915384 GGGCTAAGT-CTCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCT-GAAGGCATTTGTGTGAGTTACTATATCC
10915424 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
* * **
10915464 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
10915504 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
10915544 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
10915584 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
10915624 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
10915664 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
10915704 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
10915744 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
10915784 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
10915824 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
10915864 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
10915904 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
10915944 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
10915984 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
10916024 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
10916064 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
10916104 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
10916144 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
* * **
10916184 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
* * **
10916224 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
* * *
10916264 GGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTA-CTATATCC
10916304 GG
1 GG
10916306 TTAAAGCCCG
Statistics
Matches: 898, Mismatches: 19, Indels: 10
0.97 0.02 0.01
Matches are distributed among these distances:
39 3 0.00
40 892 0.99
41 3 0.00
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (40 bp):
GGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATATCC
Found at i:10927426 original size:28 final size:28
Alignment explanation
Indices: 10927386--10927443 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
10927376 TGTAATTGTG
10927386 CACAAGAGAAGGCCTCAGCTCCAGATGT
1 CACAAGAGAAGGCCTCAGCTCCAGATGT
10927414 CACAAGAGAAGGCCTCAGCTCCAGATGT
1 CACAAGAGAAGGCCTCAGCTCCAGATGT
10927442 CA
1 CA
10927444 TTCCTGGTAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.33, C:0.29, G:0.24, T:0.14
Consensus pattern (28 bp):
CACAAGAGAAGGCCTCAGCTCCAGATGT
Found at i:10936974 original size:17 final size:17
Alignment explanation
Indices: 10936938--10936985 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 17
10936928 CCCAATGGAC
* *
10936938 AATGCACTGAC-ATGAG
1 AATGCAATGACAATGAA
*
10936954 AATGGAATGACAATGAA
1 AATGCAATGACAATGAA
*
10936971 AATGCAATGGCAATG
1 AATGCAATGACAATG
10936986 TATACTTATC
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
16 9 0.35
17 17 0.65
ACGTcount: A:0.44, C:0.12, G:0.25, T:0.19
Consensus pattern (17 bp):
AATGCAATGACAATGAA
Found at i:10937441 original size:21 final size:20
Alignment explanation
Indices: 10937415--10937486 Score: 60
Period size: 18 Copynumber: 3.6 Consensus size: 20
10937405 TCATTTTCAG
10937415 CAACTTTTTCTTCTTCAGCAA
1 CAAC-TTTTCTTCTTCAGCAA
* *
10937436 CAAC-TTTC-ACTTCGGCAA
1 CAACTTTTCTTCTTCAGCAA
* * *
10937454 CAACTTTTTCTTTTTTAGCAT
1 CAAC-TTTTCTTCTTCAGCAA
10937475 CAA-TTTTCTTCT
1 CAACTTTTCTTCT
10937487 CAATAATAGT
Statistics
Matches: 40, Mismatches: 8, Indels: 8
0.71 0.14 0.14
Matches are distributed among these distances:
18 12 0.30
19 12 0.30
20 4 0.10
21 12 0.30
ACGTcount: A:0.22, C:0.26, G:0.06, T:0.46
Consensus pattern (20 bp):
CAACTTTTCTTCTTCAGCAA
Found at i:10939355 original size:24 final size:24
Alignment explanation
Indices: 10939318--10939387 Score: 90
Period size: 24 Copynumber: 2.9 Consensus size: 24
10939308 AACTCCTCCT
10939318 GAGCTGATGAATAGTAAGCTCT-ATC
1 GAGCTGA-GAATAGTAAGCTCTGA-C
10939343 GAGCT-AGAAATAGTAAGCTCTGAC
1 GAGCTGAG-AATAGTAAGCTCTGAC
*
10939367 GAGCTGAGAACAGTAAGCTCT
1 GAGCTGAGAATAGTAAGCTCT
10939388 TATGAGTTGA
Statistics
Matches: 41, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
23 1 0.02
24 32 0.78
25 8 0.20
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (24 bp):
GAGCTGAGAATAGTAAGCTCTGAC
Found at i:10940251 original size:13 final size:13
Alignment explanation
Indices: 10940233--10940257 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10940223 AATTGATATC
10940233 TGTGAAAATTTTG
1 TGTGAAAATTTTG
10940246 TGTGAAAATTTT
1 TGTGAAAATTTT
10940258 ATTGTTTGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.48
Consensus pattern (13 bp):
TGTGAAAATTTTG
Found at i:10941455 original size:42 final size:43
Alignment explanation
Indices: 10941393--10941491 Score: 128
Period size: 42 Copynumber: 2.3 Consensus size: 43
10941383 ATTTGAGATG
* * * *
10941393 TACATGTAAGACCATGTTTGGGACATTGGTATC-GTATTTGAT
1 TACATGTAAGACCATATTTGGGACAGTGGCATCAATATTTGAT
* * *
10941435 TTCGTGTAAGACCCTATTTGGGACAGTGGCATCAATATTTGAT
1 TACATGTAAGACCATATTTGGGACAGTGGCATCAATATTTGAT
10941478 TACATGTAAGACCA
1 TACATGTAAGACCA
10941492 CGTCTGGGAC
Statistics
Matches: 46, Mismatches: 10, Indels: 1
0.81 0.18 0.02
Matches are distributed among these distances:
42 27 0.59
43 19 0.41
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.34
Consensus pattern (43 bp):
TACATGTAAGACCATATTTGGGACAGTGGCATCAATATTTGAT
Found at i:10941500 original size:43 final size:42
Alignment explanation
Indices: 10941353--10941501 Score: 124
Period size: 43 Copynumber: 3.5 Consensus size: 42
10941343 TGTTATTTCG
* *
10941353 TGTAAGACCACGTCTGGGA-TGTTGGCATCGAT-TTGAGATGTACA
1 TGTAAGACCACGTCTGGGACAG-TGGCATC-ATATT-TGAT-TACA
* * * * * * *
10941397 TGTAAGACCATGTTTGGGACATTGGTATCGTATTTGATTTCG
1 TGTAAGACCACGTCTGGGACAGTGGCATCATATTTGATTACA
* *
10941439 TGTAAGACC-CTATTTGGGACAGTGGCATCAATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGACAGTGGCATC-ATATTTGATTACA
10941482 TGTAAGACCACGTCTGGGAC
1 TGTAAGACCACGTCTGGGAC
10941502 TTGGCATTGT
Statistics
Matches: 82, Mismatches: 18, Indels: 11
0.74 0.16 0.10
Matches are distributed among these distances:
42 26 0.32
43 30 0.37
44 26 0.32
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACAGTGGCATCATATTTGATTACA
Found at i:10947804 original size:13 final size:13
Alignment explanation
Indices: 10947786--10947810 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10947776 AATTGATATC
10947786 TGTGAAAATTTTG
1 TGTGAAAATTTTG
10947799 TGTGAAAATTTT
1 TGTGAAAATTTT
10947811 ATTGTTTGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.48
Consensus pattern (13 bp):
TGTGAAAATTTTG
Found at i:10952501 original size:17 final size:19
Alignment explanation
Indices: 10952467--10952504 Score: 62
Period size: 17 Copynumber: 2.1 Consensus size: 19
10952457 AAACCTTTAA
10952467 TTTTCTCTTTTCTTCTTTC
1 TTTTCTCTTTTCTTCTTTC
10952486 TTTTCTC-TTT-TTCTTTC
1 TTTTCTCTTTTCTTCTTTC
10952503 TT
1 TT
10952505 CCTTCCCCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 9 0.47
18 3 0.16
19 7 0.37
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTTCTCTTTTCTTCTTTC
Found at i:10974448 original size:42 final size:43
Alignment explanation
Indices: 10974377--10974477 Score: 107
Period size: 42 Copynumber: 2.4 Consensus size: 43
10974367 TGAGATTTAC
* *
10974377 GTGTAAGACCATGTCTGGGACATCGGCATC-ACATTTGATTTT
1 GTGTAAGACCATGTCTAGGACATCAGCATCGACATTTGATTTT
* * **
10974419 GTGTAAGACCTTGTCTAGGACAGT-AGCATCGATATTTGATTAC
1 GTGTAAGACCATGTCTAGGACA-TCAGCATCGACATTTGATTTT
* *
10974462 ATGTAAGACCACGTCT
1 GTGTAAGACCATGTCT
10974478 GGGATGTTGG
Statistics
Matches: 48, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
42 25 0.52
43 23 0.48
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.32
Consensus pattern (43 bp):
GTGTAAGACCATGTCTAGGACATCAGCATCGACATTTGATTTT
Found at i:10974598 original size:71 final size:71
Alignment explanation
Indices: 10974509--10974799 Score: 582
Period size: 71 Copynumber: 4.1 Consensus size: 71
10974499 CTTTCCAAGC
10974509 TATCCGAGTATCCTTAATGATTCCGACCGGTTCAATGGGCACTTCGAGAAATGAATAACTATGTG
1 TATCCGAGTATCCTTAATGATTCCGACCGGTTCAATGGGCACTTCGAGAAATGAATAACTATGTG
10974574 AATGTA
66 AATGTA
10974580 TATCCGAGTATCCTTAATGATTCCGACCGGTTCAATGGGCACTTCGAGAAATGAATAACTATGTG
1 TATCCGAGTATCCTTAATGATTCCGACCGGTTCAATGGGCACTTCGAGAAATGAATAACTATGTG
10974645 AATGTA
66 AATGTA
10974651 TATCCGAGTATCCTTAATGATTCCGACCGGTTCAATGGGCACTTCGAGAAATGAATAACTATGTG
1 TATCCGAGTATCCTTAATGATTCCGACCGGTTCAATGGGCACTTCGAGAAATGAATAACTATGTG
10974716 AATGTA
66 AATGTA
10974722 TATCCGAGTATCCTTAATGATTCCGACCGGTTCAATGGGCACTTCGAGAAATGAATAACTATGTG
1 TATCCGAGTATCCTTAATGATTCCGACCGGTTCAATGGGCACTTCGAGAAATGAATAACTATGTG
10974787 AATGTA
66 AATGTA
10974793 TATCCGA
1 TATCCGA
10974800 TTCAGGTATG
Statistics
Matches: 220, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 220 1.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.30
Consensus pattern (71 bp):
TATCCGAGTATCCTTAATGATTCCGACCGGTTCAATGGGCACTTCGAGAAATGAATAACTATGTG
AATGTA
Found at i:10977828 original size:13 final size:13
Alignment explanation
Indices: 10977810--10977834 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10977800 TAAGTAATTA
10977810 ACCAAATCTGCAT
1 ACCAAATCTGCAT
10977823 ACCAAATCTGCA
1 ACCAAATCTGCA
10977835 CGAACAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.32, G:0.08, T:0.20
Consensus pattern (13 bp):
ACCAAATCTGCAT
Found at i:10979229 original size:58 final size:57
Alignment explanation
Indices: 10979139--10979254 Score: 187
Period size: 58 Copynumber: 2.0 Consensus size: 57
10979129 AATAATTGAG
* *
10979139 ACTTTTCTCAAATTAACACCCTAGGGTTGCATTAACTCGATCTATGGATCCCCTTATT
1 ACTTTTCTCAAATTAACACCCTAGGGTTGCATTAACTCAATCTATAGA-CCCCTTATT
* *
10979197 ACTTTTCTCTAATTAACACTCTAGGGTTGCATTAACTCAATCTATAGACCCCTTATT
1 ACTTTTCTCAAATTAACACCCTAGGGTTGCATTAACTCAATCTATAGACCCCTTATT
10979254 A
1 A
10979255 GGTTTCACCC
Statistics
Matches: 54, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
57 10 0.19
58 44 0.81
ACGTcount: A:0.28, C:0.25, G:0.10, T:0.37
Consensus pattern (57 bp):
ACTTTTCTCAAATTAACACCCTAGGGTTGCATTAACTCAATCTATAGACCCCTTATT
Found at i:10980103 original size:89 final size:89
Alignment explanation
Indices: 10979952--10980128 Score: 318
Period size: 89 Copynumber: 2.0 Consensus size: 89
10979942 TCCTAAGTAT
10979952 AAAACATGAAATTAAACCATTAGAAGCATCGAATTCACCAATTCTAAGGGAAAATCATCCATAAA
1 AAAACATGAAATTAAACCATTAGAAGCATCGAATTCACCAATTCTAAGGGAAAATCATCCATAAA
10980017 ATGCGTTAAGCATGGGGTAAAAAC
66 ATGCGTTAAGCATGGGGTAAAAAC
* * *
10980041 AAAACATGAACTTAAAGCATTAGGAGCATCGAATTCACCAATTCTAAGGGAAAATCATCCATAAA
1 AAAACATGAAATTAAACCATTAGAAGCATCGAATTCACCAATTCTAAGGGAAAATCATCCATAAA
*
10980106 ATGTGTTAAGCATGGGGTAAAAA
66 ATGCGTTAAGCATGGGGTAAAAA
10980129 TATGTATATA
Statistics
Matches: 84, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
89 84 1.00
ACGTcount: A:0.45, C:0.16, G:0.17, T:0.22
Consensus pattern (89 bp):
AAAACATGAAATTAAACCATTAGAAGCATCGAATTCACCAATTCTAAGGGAAAATCATCCATAAA
ATGCGTTAAGCATGGGGTAAAAAC
Found at i:10993175 original size:57 final size:57
Alignment explanation
Indices: 10993049--10993175 Score: 161
Period size: 58 Copynumber: 2.2 Consensus size: 57
10993039 ACCTCATTAC
* *
10993049 AAAAAGGATTTAGCCCAGACGGGTAATCATGATATAAGTCCTCTCGAGCATATGTTAT
1 AAAAAGGATTTAGCCCAGACGGGTAATCA-GATATAAGTCCTCTAGAGCATATGTCAT
**
10993107 AAATTGGATTTAGCCCAGACGGGTAATTCA-A-ATCAAGCTCCT-TAGAGCATATGTCAT
1 AAAAAGGATTTAGCCCAGACGGGTAA-TCAGATAT-AAG-TCCTCTAGAGCATATGTCAT
10993164 AAAAAGGATTTA
1 AAAAAGGATTTA
10993176 ACTTGGACTG
Statistics
Matches: 60, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
56 2 0.03
57 27 0.45
58 28 0.47
59 3 0.05
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.28
Consensus pattern (57 bp):
AAAAAGGATTTAGCCCAGACGGGTAATCAGATATAAGTCCTCTAGAGCATATGTCAT
Found at i:10997284 original size:48 final size:48
Alignment explanation
Indices: 10997220--10997340 Score: 116
Period size: 48 Copynumber: 2.5 Consensus size: 48
10997210 GTACCTATAC
* * * * * *
10997220 CATGACCCAAAGCCAAATCATTGTAACTTATATCCAAAGTACTGATAT
1 CATGGCCCGAAGCCAAATCAATGTAACTCATACCCAAAGTACTAATAT
** * * * * *
10997268 CATGGCCCGAAGCCAAATCGGTATATCTCGTACCCGAAGTGCTAATAT
1 CATGGCCCGAAGCCAAATCAATGTAACTCATACCCAAAGTACTAATAT
*
10997316 CATGGCCCGAAGCCAACTCAATGTA
1 CATGGCCCGAAGCCAAATCAATGTA
10997341 TCCCCTAATG
Statistics
Matches: 57, Mismatches: 16, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
48 57 1.00
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (48 bp):
CATGGCCCGAAGCCAAATCAATGTAACTCATACCCAAAGTACTAATAT
Found at i:11000777 original size:18 final size:17
Alignment explanation
Indices: 11000747--11000780 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
11000737 TTACCCACAC
*
11000747 GGGCCCATGGGCCCATT
1 GGGCCCATCGGCCCATT
11000764 GGGCCCATACGGCCCAT
1 GGGCCCAT-CGGCCCAT
11000781 GAGATCGATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.15, C:0.38, G:0.32, T:0.15
Consensus pattern (17 bp):
GGGCCCATCGGCCCATT
Found at i:11004977 original size:50 final size:50
Alignment explanation
Indices: 11004923--11005022 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
11004913 TAAGCAAACA
11004923 TGGACCAAATCACTAAGAGCCATTAACACATATATATACAATACATAATG
1 TGGACCAAATCACTAAGAGCCATTAACACATATATATACAATACATAATG
11004973 TGGACCAAATCACTAAGAGCCATTAACACATATATATACAATACATAATG
1 TGGACCAAATCACTAAGAGCCATTAACACATATATATACAATACATAATG
11005023 GCCAAAATAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.46, C:0.20, G:0.10, T:0.24
Consensus pattern (50 bp):
TGGACCAAATCACTAAGAGCCATTAACACATATATATACAATACATAATG
Done.