Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 46 of 276
Found at i:14308011 original size:21 final size:21
Alignment explanation
Indices: 14307973--14308012 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
14307963 CTGCCGGAAG
* *
14307973 AACCACAATCCTCACTGGAGC
1 AACCACAACCCCCACTGGAGC
*
14307994 AACCACAACCCCCGCTGGA
1 AACCACAACCCCCACTGGA
14308013 AGCTGAACGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.33, C:0.42, G:0.15, T:0.10
Consensus pattern (21 bp):
AACCACAACCCCCACTGGAGC
Found at i:14310378 original size:126 final size:126
Alignment explanation
Indices: 14310153--14310595 Score: 681
Period size: 126 Copynumber: 3.5 Consensus size: 126
14310143 CCAAATAGGA
* * *
14310153 ACTACTGTAGTAAAAGAGCGTCCACGTGGGAGTTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
1 ACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
* * *
14310218 ACTTGACGCGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTCCAGAT
66 GCTTGAAGCGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAT
* * * * **
14310279 ACTACTGTAGCAAAAGAGTGTCTACGTGGAAGCTTTTTTGAATAATTTTTTTGACAGTGCATCCT
1 ACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
* *
14310344 GTTTGAAGTGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAT
66 GCTTGAAGCGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAT
* *
14310405 ACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGACAGTACATCTT
1 ACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
*
14310470 GCTTGAAGCGTTTTGGACACTATTTATTCA-AAAGCGTCTTCTCAAAATTATTTTTTCAGAT
66 GCTTGAAGCGTTTTGGACACTATTTGTTCAGAAA-CGTCTTCTCAAAATTATTTTTTCAGAT
* * * *
14310531 ACTACTGTAGTAAAAGAGCATCCACGTGGAAACTTTTTTCAGTAATTTTGGTGACAGTGCATCCT
1 ACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
14310596 AATTTAATTA
Statistics
Matches: 285, Mismatches: 31, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
125 3 0.01
126 282 0.99
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (126 bp):
ACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
GCTTGAAGCGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAT
Found at i:14324114 original size:18 final size:18
Alignment explanation
Indices: 14324091--14324144 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
14324081 CCACCACCAA
14324091 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
*
14324109 CTCCACCA-CCA-A----
1 CTCCACTAGCCACACTTG
14324121 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
14324139 CTCCAC
1 CTCCAC
14324145 CACCTACTCC
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 7 0.25
13 3 0.11
14 1 0.04
16 1 0.04
17 3 0.11
18 13 0.46
ACGTcount: A:0.24, C:0.50, G:0.07, T:0.19
Consensus pattern (18 bp):
CTCCACTAGCCACACTTG
Found at i:14324117 original size:30 final size:30
Alignment explanation
Indices: 14324081--14324155 Score: 141
Period size: 30 Copynumber: 2.5 Consensus size: 30
14324071 CTAGCCTTTG
14324081 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
14324111 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
*
14324141 CCACCACCTACTCCA
1 CCACCACCAACTCCA
14324156 NNNNNNNNNN
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.27, C:0.52, G:0.05, T:0.16
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:14335876 original size:12 final size:13
Alignment explanation
Indices: 14335858--14335891 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
14335848 CGTCTTAAGA
14335858 AAAAAGAGAAAAG
1 AAAAAGAGAAAAG
*
14335871 -AAAAGAAAAAAG
1 AAAAAGAGAAAAG
14335883 AAAAAGAGA
1 AAAAAGAGA
14335892 GAGGGATCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (13 bp):
AAAAAGAGAAAAG
Found at i:14335876 original size:19 final size:18
Alignment explanation
Indices: 14335854--14335889 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
14335844 AGGGCGTCTT
14335854 AAGAAAAAAGAGAAAAGAA
1 AAGAAAAAAGA-AAAAGAA
14335873 AAGAAAAAAGAAAAAGA
1 AAGAAAAAAGAAAAAGA
14335890 GAGAGGGATC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (18 bp):
AAGAAAAAAGAAAAAGAA
Found at i:14336851 original size:16 final size:16
Alignment explanation
Indices: 14336818--14336851 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
14336808 CGCTAAGGTA
* *
14336818 TTTTCAATTTCTGTTT
1 TTTTCAATTTATGCTT
14336834 TTTTCAATTTATGCTT
1 TTTTCAATTTATGCTT
14336850 TT
1 TT
14336852 CAAAAATCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.12, G:0.06, T:0.68
Consensus pattern (16 bp):
TTTTCAATTTATGCTT
Found at i:14336940 original size:16 final size:16
Alignment explanation
Indices: 14336907--14336940 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
14336897 CGTTGAGGTA
* *
14336907 TTTTCAATTTCTGTTT
1 TTTTCAATTTATGCTT
14336923 TTTTCAATTTATGCTT
1 TTTTCAATTTATGCTT
14336939 TT
1 TT
14336941 CAAAAATCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.12, G:0.06, T:0.68
Consensus pattern (16 bp):
TTTTCAATTTATGCTT
Found at i:14336945 original size:89 final size:89
Alignment explanation
Indices: 14336762--14337285 Score: 632
Period size: 89 Copynumber: 5.8 Consensus size: 89
14336752 TACCTTTCAA
* * *
14336762 AAAAATCAACTTATATTGCGAGAGGTGAGTTGGGCCTCAGGTCACACGCTAAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAATT
14336827 TCTGTTTTTTTCAATTTATGCTTTTC
64 TCTGTTTTTTTCAATTTATGCTTTTC
* *
14336853 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
14336918 TGTTTTTTTCAATTTATGCTTTTC
66 TGTTTTTTTCAATTTATGCTTTTC
* * * * *
14336942 AAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACGCCGAGGTATTTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
* * *
14337007 TG--CTTTT-AATTTCTGTTTTTC
66 TGTTTTTTTCAATTTATGCTTTTC
* *
14337028 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
*
14337093 TG--TTTTTCAATTTTTGTCTTACAAATTCTGC
66 TGTTTTTTTCAATTTATG-C-T-----TT-T-C
**
14337124 TTTTCAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAAT
1 ---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAAT
* *
14337189 TT-TCCTTTTTTT-AATTTATG-TTTCTAA
63 TTCT-GTTTTTTTCAATTTATGCTTT-T-C
* * *
14337216 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
14337281 TGTTT
66 TGTTT
14337286 GTCAAAACTC
Statistics
Matches: 382, Mismatches: 34, Indels: 36
0.85 0.08 0.08
Matches are distributed among these distances:
86 78 0.20
87 11 0.03
89 171 0.45
90 1 0.00
91 39 0.10
92 4 0.01
94 2 0.01
95 1 0.00
96 1 0.00
97 1 0.00
98 1 0.00
99 60 0.16
100 7 0.02
101 5 0.01
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.38
Consensus pattern (89 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
TGTTTTTTTCAATTTATGCTTTTC
Found at i:14337026 original size:13 final size:13
Alignment explanation
Indices: 14336996--14337026 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
14336986 CGCCGAGGTA
14336996 TTTTTAATTTCTG
1 TTTTTAATTTCTG
*
14337009 CTTTTAATTTCTG
1 TTTTTAATTTCTG
14337022 TTTTT
1 TTTTT
14337027 CAAAAATCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.13, C:0.10, G:0.06, T:0.71
Consensus pattern (13 bp):
TTTTTAATTTCTG
Found at i:14337101 original size:14 final size:14
Alignment explanation
Indices: 14337082--14337130 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 14
14337072 CGTTGAGGTA
14337082 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
*
14337096 TTTTCAATTTTTGT
1 TTTTCAATTTCTGT
* * * *
14337110 CTTACAAATTCTGC
1 TTTTCAATTTCTGT
14337124 TTTTCAA
1 TTTTCAA
14337131 ATCAACTCAT
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.06, T:0.57
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:14337269 original size:188 final size:186
Alignment explanation
Indices: 14336934--14337290 Score: 527
Period size: 188 Copynumber: 1.9 Consensus size: 186
14336924 TTTCAATTTA
* *
14336934 TGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACGCCGAGGTATTT
1 TGCTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACGCCGAGGTATTT
* * ** *
14336999 TTAATTTCTGCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
65 TCAATTTCTGCTTTTAATTTATGTTTTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCC
* * * *
14337064 TCAGGGCACGTTGAGGTATTTTCAATTTCTGTTTTTCAATTTTTGTCTTACAAATTC
130 TCAGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAATTTTTGTCTTACAAATTC
* *
14337121 TGCTTTTC-AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
1 TGCTTTTCAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACGCCGAGGTATTTT
**
14337185 CAATTTTCCTTTTTTTAATTTATGTTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
66 CAA-TTT-CTGCTTTTAATTTATGTTT-TAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
*
14337250 CCTCAGGACACGCTGAGGTAATTTCAATTTTTGTTTGTCAA
128 CCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAA
14337291 AACTCAACTC
Statistics
Matches: 151, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
185 54 0.36
186 3 0.02
187 24 0.16
188 70 0.46
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (186 bp):
TGCTTTTCAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACGCCGAGGTATTTT
CAATTTCTGCTTTTAATTTATGTTTTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
CAGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAATTTTTGTCTTACAAATTC
Found at i:14337402 original size:75 final size:75
Alignment explanation
Indices: 14337209--14337427 Score: 307
Period size: 73 Copynumber: 2.9 Consensus size: 75
14337199 TTAATTTATG
* *
14337209 TTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
1 TTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
* *
14337274 CAATTTTTGTT
65 CAATTTCTATT
* * * * *
14337285 TGTC--AAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
14337348 AATTTCTATT
66 AATTTCTATT
* * *
14337358 TTTCAAAAAAATCAACACATATTACGATAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
14337423 AATTT
66 AATTT
14337428 TCCTTTTTTT
Statistics
Matches: 124, Mismatches: 17, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
73 64 0.52
75 57 0.46
76 3 0.02
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (75 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
AATTTCTATT
Found at i:14337500 original size:89 final size:89
Alignment explanation
Indices: 14337358--14337962 Score: 1158
Period size: 89 Copynumber: 6.8 Consensus size: 89
14337348 AATTTCTATT
* * * *
14337358 TTTC-AAAAAAATCAACACATATTACGATAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
1 TTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
14337422 CAATTTTCCTTTTTTTAATTTATG
66 CAATTTTCCTTTTTTTAATTTATG
14337446 TTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
1 TTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
14337511 CAATTTTCCTTTTTTTAATTTATG
66 CAATTTTCCTTTTTTTAATTTATG
14337535 TTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
1 TTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
14337600 CAATTTTCCTTTTTTTAATTTATG
66 CAATTTTCCTTTTTTTAATTTATG
14337624 TTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
1 TTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
14337689 CAATTTTCCTTTTTTTAATTTATG
66 CAATTTTCCTTTTTTTAATTTATG
14337713 TTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
1 TTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
14337778 CAATTTTCCTTTTTTTAATTTATG
66 CAATTTTCCTTTTTTTAATTTATG
14337802 TTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
1 TTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
14337867 CAATTTTCCTTTTTTTAATTTATG
66 CAATTTTCCTTTTTTTAATTTATG
*
14337891 TTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
1 TTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
14337956 CAATTTT
66 CAATTTT
14337963 TGTTTGTCAA
Statistics
Matches: 511, Mismatches: 5, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
88 4 0.01
89 507 0.99
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37
Consensus pattern (89 bp):
TTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
CAATTTTCCTTTTTTTAATTTATG
Found at i:14337661 original size:178 final size:174
Alignment explanation
Indices: 14337358--14338824 Score: 1319
Period size: 178 Copynumber: 8.7 Consensus size: 174
14337348 AATTTCTATT
* * *
14337358 TTTC-AAAAAAATCAACACATATTACGATAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
1 TTTCTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
*
14337422 CAATTTTCCTTTTTTTAATTTATGTTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
66 CAA-TTT-CTTTTTTTAATTTATGTTTCTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
14337487 CCTCAGGACACGCTGAGGTATTTTCAATTTTCCTTTTTTTAATTTATG
129 CCTCAGGACACGCTGAGGTATTTTCAA-TTT-CTTTTTTTAATTTATG
*
14337535 TTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
1 TTTCTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
*
14337600 CAATTTTCCTTTTTTTAATTTATGTTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
66 CAA-TTT-CTTTTTTTAATTTATGTTTCTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
14337665 CCTCAGGACACGCTGAGGTATTTTCAATTTTCCTTTTTTTAATTTATG
129 CCTCAGGACACGCTGAGGTATTTTCAA-TTT-CTTTTTTTAATTTATG
*
14337713 TTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
1 TTTCTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
*
14337778 CAATTTTCCTTTTTTTAATTTATGTTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
66 CAA-TTT-CTTTTTTTAATTTATGTTTCTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
14337843 CCTCAGGACACGCTGAGGTATTTTCAATTTTCCTTTTTTTAATTTATG
129 CCTCAGGACACGCTGAGGTATTTTCAA-TTT-CTTTTTTTAATTTATG
* *
14337891 TTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
1 TTTCTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
*
14337956 CAA------TTTTT--GTT-TG--TC---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
66 CAATTTCTTTTTTTAATTTATGTTTCTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* ** * *
14338007 TCAAGACACATTGAGGTATTTTCAATTTC----TGT-CTTTA--
131 TCAGGACACGCTGAGGTATTTTCAATTTCTTTTTTTAATTTATG
* * * *
14338044 -----AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTT
1 TTTCTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
* * *
14338104 CAATTTC----TGT--TTT-TG-----AAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACC
66 CAATTTCTTTTTTTAATTTATGTTTCTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* * *
14338157 TCA--AGACGCTGAGGTAATTTCAA------TTTTT--GTT-TG
131 TCAGGACACGCTGAGGTATTTTCAATTTCTTTTTTTAATTTATG
* * *
14338190 --TC---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTAAGGTATTTT
1 TTTCTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
* * * * *
14338250 CAATTTCTGTCTTTCA---A-------AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACC
66 CAATTTCTTTTTTTAATTTATGTTTCTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* * * * * * *
14338305 TCA--AGATGCTGAGGTGTTTTCCATTTCTGTTCTTCAATTTCTG
131 TCAGGACACGCTGAGGTATTTTCAATTTCT-TTTTTTAATTTATG
* * * * * **
14338348 TGTT-TCAAAAAAATCAGCTCATATTACGAGTGGAGAGTTGAGCCTTGACTCACACGCTGAGGTA
1 T-TTCT-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCA-GGACACGCTGAGGTA
* * * * * * *
14338412 TTTTAAAATTCTGTTTTTCAAATTT-TGTTTTTCCAAAAAATCAACTCATATTGCGATAGGTGAT
62 TTTTCAATTTCT-TTTTT-TAATTTATGTTTCT-AAAAAAATCAACTCATATTGCGAGAGGTGAG
** *
14338476 TTCTGCCTCAGGACACGCTGAGATATTTTCAATTTCTTTTTTTCAATTTATG
124 TTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTTTTTTT-AATTTATG
* * * *
14338528 TTTGTCAAAAAAATCAACTCGTAATGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTAT
1 TTTCT-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACGCTGAGGTAT
* * *
14338593 TTTCAATTGATTTTTTTTTCAATTTATGCTTTGT--AAAAATCAACTCATATTACGAGAGGTGAG
63 TTTCAATT--TCTTTTTTT-AATTTATG-TTTCTAAAAAAATCAACTCATATTGCGAGAGGTGAG
** * ** **
14338656 TTGAGCCTCAGGTCACATACCGAGGTATTTTCAAAATCTGTTTTACAAATTT-TG
124 TTGAGCCTCAGG--ACACGCTGAGGTATTTTCAATTTCT-TTTT-TTAATTTATG
* * * * *
14338710 TTT-T--AAAAATCAACTCATATTGTGAGAAGTGAGTTGAGCCT-TGGCTCACGTGCTGAGCTAT
1 TTTCTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACAC--GCTGAGGTAT
* * * *
14338771 TTTCAATTTCTGTTTTTAATGTCTA-GTTT-T-AAAAAGTCAATTTATATTGCGAGA
63 TTTCAATTTCTTTTTTTAAT-T-TATGTTTCTAAAAAAATCAACTCATATTGCGAGA
14338825 AATGAGTTAA
Statistics
Matches: 1106, Mismatches: 111, Indels: 148
0.81 0.08 0.11
Matches are distributed among these distances:
145 2 0.00
146 64 0.06
148 128 0.12
150 45 0.04
155 7 0.01
156 2 0.00
157 2 0.00
158 2 0.00
160 1 0.00
161 4 0.00
162 57 0.05
164 32 0.03
165 4 0.00
166 21 0.02
167 5 0.00
168 3 0.00
170 5 0.00
174 1 0.00
175 25 0.02
176 12 0.01
177 7 0.01
178 498 0.45
179 8 0.01
180 119 0.11
181 11 0.01
182 28 0.03
183 13 0.01
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (174 bp):
TTTCTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
CAATTTCTTTTTTTAATTTATGTTTCTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
TCAGGACACGCTGAGGTATTTTCAATTTCTTTTTTTAATTTATG
Found at i:14337837 original size:267 final size:256
Alignment explanation
Indices: 14337358--14338832 Score: 1323
Period size: 267 Copynumber: 5.8 Consensus size: 256
14337348 AATTTCTATT
* *
14337358 TTTC-AAAAAAATCAACACATATTACGATAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
1 TTTCTAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
14337422 CAATTTTCCTTTTTTTAATTTATGTTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
66 CAA--TT-CTTTTTTTAATTT-TGTTTCT--AAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
14337487 CCTCAGGACACGCTGAGGTATTTTCAATTTTCCTTTTTTTAATTTATGTTTCTAAAAAAATCAAC
125 CCTCAGGACACGCTGAGGTATTTTCAA-TTT-CTTTTTTTAATTTA-GTTT-TAAAAAAATCAAC
14337552 TCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCCTTTTTTTA
186 TCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTT-CTTTTTTTA
14337617 ATTTATG
250 ATTTATG
* *
14337624 TTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
1 TTTCTAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
14337689 CAATTTTCCTTTTTTTAATTTATGTTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
66 CAA--TT-CTTTTTTTAATTT-TGTTTCT--AAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
14337754 CCTCAGGACACGCTGAGGTATTTTCAATTTTCCTTTTTTTAATTTATGTTTCTAAAAAAATCAAC
125 CCTCAGGACACGCTGAGGTATTTTCAA-TTT-CTTTTTTTAATTTA-GTTT-TAAAAAAATCAAC
14337819 TCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCCTTTTTTTA
186 TCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTT-CTTTTTTTA
14337884 ATTTATG
250 ATTTATG
* * *
14337891 TTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
1 TTTCTAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
* * *
14337956 CAA-----TTTTT--GTTTG--TC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
66 CAATTCTTTTTTTAATTTTGTTTCTAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAG
** * * *
14338011 GACACATTGAGGTATTTTCAATTTC----TGT-CTTTA-----AAAAAAATCAGCTCATATTGCG
131 GACACGCTGAGGTATTTTCAATTTCTTTTTTTAATTTAGTTTTAAAAAAATCAACTCATATTGCG
* * * * *
14338066 AGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAA-TTTC----TGT--TTT-TG
196 AGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCTTTTTTTAATTTATG
* * * * *
14338119 -----AAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCA--AGACGCTGAGGTAATTT
1 TTTCTAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
* * *
14338177 CAA-----TTTTT--GTTTG--TC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
66 CAATTCTTTTTTTAATTTTGTTTCTAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAG
* * * * * *
14338232 GACACGTTAAGGTATTTTCAATTTCTGTCTTTCA---A-----AAAAAAATCAGCTCATATTGCG
131 GACACGCTGAGGTATTTTCAATTTCTTTTTTTAATTTAGTTTTAAAAAAATCAACTCATATTGCG
* * * * * * * * *
14338289 AGAGGTGAGTTGAACCTCA--AGATGCTGAGGTGTTTTCCA-TTTCTGTTCTTCAATTTCTG
196 AGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCT-TTTTTTAATTTATG
* * * * **
14338348 TGTT-TCAAAAAAATCAGCTCATATTACGAGTGGAGAGTTGAGCCTTGACTCACACGCTGAGGTA
1 T-TTCT-AAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCC-TCA-GGACACGCTGAGGTA
* * * * * *
14338412 TTTTAAAATTCTGTTTTTCAAATTTTGTTTTTCCAAAAAATCAACTCATATTGCGATAGGTGATT
62 TTTT-CAATTCT-TTTTT-TAATTTTG--TTT-CTAAAAATCAACTCATATTGCGAGAAGTGAGT
** *
14338477 TCTGCCTCAGGACACGCTGAGATATTTTCAATTTCTTTTTTTCAATTTATGTTTGTCAAAAAAAT
121 TGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTTTTTTT-AATTTA-GTTT-T-AAAAAAAT
* * * *
14338542 CAACTCGTAATGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAATTGATT-T
182 CAACTCATATTGCGAGAAGTGAGTTGAGCCTCAG--GACACGCTGAGGTATTTTCAATT--TTCT
14338606 TTTTTTCAATTTATG
243 TTTTTT-AATTTATG
* ** *
14338621 CTTTGT--AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGTCACATACCGAGGTAT
1 -TTTCTAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTAT
* ** *
14338684 TTTCAAAATCTGTTTTACAAATTTTGTTT-TAAAAATCAACTCATATTGTGAGAAGTGAGTTGAG
63 TTTC-AATTCT-TTTT-TTAATTTTGTTTCTAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
* * * * *
14338748 CCT-TGGCTCACGTGCTGAGCTATTTTCAATTTCTGTTTTTAATGTCTAGTTTT-AAAAAGTCAA
125 CCTCAGG-ACAC--GCTGAGGTATTTTCAATTTCTTTTTTTAAT-T-TAGTTTTAAAAAAATCAA
* * *
14338811 TTTATATTGCGAGAAATGAGTT
185 CTCATATTGCGAGAAGTGAGTT
14338833 AAGCTAAGGA
Statistics
Matches: 1041, Mismatches: 97, Indels: 142
0.81 0.08 0.11
Matches are distributed among these distances:
221 113 0.11
223 80 0.08
225 2 0.00
226 1 0.00
228 5 0.00
229 5 0.00
231 2 0.00
235 33 0.03
236 5 0.00
237 58 0.06
239 15 0.01
240 2 0.00
244 4 0.00
245 2 0.00
246 4 0.00
249 5 0.00
250 3 0.00
251 57 0.05
253 1 0.00
254 3 0.00
255 62 0.06
256 3 0.00
257 2 0.00
259 6 0.01
266 31 0.03
267 396 0.38
268 4 0.00
269 33 0.03
270 4 0.00
271 81 0.08
272 5 0.00
273 10 0.01
274 4 0.00
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (256 bp):
TTTCTAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
CAATTCTTTTTTTAATTTTGTTTCTAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAG
GACACGCTGAGGTATTTTCAATTTCTTTTTTTAATTTAGTTTTAAAAAAATCAACTCATATTGCG
AGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCTTTTTTTAATTTATG
Found at i:14338003 original size:73 final size:73
Alignment explanation
Indices: 14337898--14338310 Score: 528
Period size: 73 Copynumber: 5.6 Consensus size: 73
14337888 ATGTTTCTAA
* * * * *
14337898 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTTT
14337963 TGTTTGTC
66 TGTTTGTC
* * *
14337971 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTTT
*
14338036 TGTCTT-TAAA
66 TGT-TTGT--C
*
14338046 AAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTT-
* **
14338111 TGTTTTTGAA
65 T-TGTTTGTC
* * *
14338121 AAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAG--ACGCTGAGGTAATTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTTT
14338184 TGTTTGTC
66 TGTTTGTC
* * *
14338192 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTAAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTTT
14338257 TGTCTT-TC
66 TGT-TTGTC
*
14338265 AAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
1 ----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
14338311 TGCTGAGGTG
Statistics
Matches: 299, Mismatches: 28, Indels: 22
0.86 0.08 0.06
Matches are distributed among these distances:
71 44 0.15
72 1 0.00
73 105 0.35
74 4 0.01
75 101 0.34
76 2 0.01
77 42 0.14
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.31
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTTT
TGTTTGTC
Found at i:14338084 original size:75 final size:73
Alignment explanation
Indices: 14337878--14338335 Score: 559
Period size: 75 Copynumber: 6.2 Consensus size: 73
14337868 AATTTTCCTT
* * * * *
14337878 TTTTTAATTTATGTTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACAC
1 TTTTCAATTTCTGTTT-TAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACAC
*
14337943 GCTGAGGTA
65 GTTGAGGTA
* * * *
14337952 ATTTCAATTTTTGTTTGT-CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
1 TTTTCAATTTCTGTTT-TAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACAC
*
14338016 ATTGAGGTA
65 GTTGAGGTA
*
14338025 TTTTCAATTTCTGTCTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
1 TTTTCAATTTCTGT-TTT-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
14338090 CGTTGAGGTA
64 CGTTGAGGTA
*
14338100 TTTTCAATTTCTGTTTTTGAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAG--A
1 TTTTCAATTTCTG-TTTT-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
*
14338163 CGCTGAGGTA
64 CGTTGAGGTA
* * * *
14338173 ATTTCAATTTTTGTTTGT-CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
1 TTTTCAATTTCTGTTT-TAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACAC
*
14338237 GTTAAGGTA
65 GTTGAGGTA
*
14338246 TTTTCAATTTCTGTCTTTCAAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG-
1 TTTTCAATTTCTGT-TTT---AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
* * *
14338310 -ATGCTGAGGTG
62 CACGTTGAGGTA
*
14338321 TTTTCCATTTCTGTT
1 TTTTCAATTTCTGTT
14338336 CTTCAATTTC
Statistics
Matches: 336, Mismatches: 36, Indels: 24
0.85 0.09 0.06
Matches are distributed among these distances:
71 39 0.12
72 3 0.01
73 107 0.32
74 19 0.06
75 128 0.38
76 1 0.00
77 39 0.12
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.34
Consensus pattern (73 bp):
TTTTCAATTTCTGTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACG
TTGAGGTA
Found at i:14338316 original size:148 final size:146
Alignment explanation
Indices: 14337895--14338334 Score: 591
Period size: 148 Copynumber: 3.0 Consensus size: 146
14337885 TTTATGTTTC
* * * *
14337895 TAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
1 TAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAAT
* * *
14337960 TTTTGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGG
66 TTCTGTTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGC--TGAGG
*
14338023 TATTTTCAATTTCTGTCTT
128 TAATTTCAATTTCTGTCTT
* *
14338042 TAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAA
1 T-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAA
* *
14338107 TTTCTGTTTTTGAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAGACGCTGAGGT
65 TTTCTG-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGT
*
14338172 AATTTCAATTTTTGT-TT
129 AATTTCAATTTCTGTCTT
* *
14338189 GT-CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTAAGGTATTTTCAA
1 -TAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAA
* *
14338253 TTTCTGTCTTTCAAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGATGCTGAG
65 TTTCTGT-TTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAG
** *
14338318 GTGTTTTCCATTTCTGT
127 GTAATTTCAATTTCTGT
14338335 TCTTCAATTT
Statistics
Matches: 260, Mismatches: 25, Indels: 15
0.87 0.08 0.05
Matches are distributed among these distances:
145 1 0.00
146 67 0.26
147 3 0.01
148 144 0.55
149 3 0.01
150 42 0.16
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.32
Consensus pattern (146 bp):
TAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAAT
TTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTAA
TTTCAATTTCTGTCTT
Found at i:14338333 original size:221 final size:221
Alignment explanation
Indices: 14337878--14338335 Score: 742
Period size: 221 Copynumber: 2.1 Consensus size: 221
14337868 AATTTTCCTT
* * * *
14337878 TTTTTAATTTATGTTTCT-AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGTTTTTGAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCA-GACA
14337942 CGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
65 CGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
*
14338007 TCAAGACACATTGAGGTATTTTCAATTTCTGTCTTTAAAAAAAATCAGCTCATATTGCGAGAGGT
130 TCAAGACACATTAAGGTATTTTCAATTTCTGTCTTTAAAAAAAATCAGCTCATATTGCGAGAGGT
*
14338072 GAGTTGAACCTCAAGACACGTTGAGGTA
195 GAGTTGAACCTCAAGA-ACGCTGAGGTA
* * *
14338100 TTTTCAATTTCTGTTTTTGAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCA-AGAC
1 TTTTCAATTTCTGTTTTTGAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAGACAC
14338164 GCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
66 GCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
*
14338229 CAAGACACGTTAAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAATCAGCTCATATTGCGAGAGG
131 CAAGACACATTAAGGTATTTTCAATTTCTGTCTTT--AAAAAAAATCAGCTCATATTGCGAGAGG
* *
14338294 TGAGTTGAACCTCAAG-ATGCTGAGGTG
194 TGAGTTGAACCTCAAGAACGCTGAGGTA
*
14338321 TTTTCCATTTCTGTT
1 TTTTCAATTTCTGTT
14338336 CTTCAATTTC
Statistics
Matches: 220, Mismatches: 13, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
221 123 0.56
222 15 0.07
223 82 0.37
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.34
Consensus pattern (221 bp):
TTTTCAATTTCTGTTTTTGAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAGACAC
GCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
CAAGACACATTAAGGTATTTTCAATTTCTGTCTTTAAAAAAAATCAGCTCATATTGCGAGAGGTG
AGTTGAACCTCAAGAACGCTGAGGTA
Found at i:14338518 original size:89 final size:86
Alignment explanation
Indices: 14338269--14338824 Score: 396
Period size: 91 Copynumber: 6.3 Consensus size: 86
14338259 TCTTTCAAAA
* * * * * * *
14338269 AAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA--AGATGCTGAGGTGTTTTCCATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAAATTC
* *
14338332 TGTTCTTCAATTTCTGTGTT-T
66 TGTTTTTCAATTTATGT-TTGT
* * * * * ** *
14338353 CAAAAAAATCAGCTCATATTACGAGTGGAGAGTTGAGCCTTGACTCACACGCTGAGGTATTTTAA
1 ---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCA-GGACACGCTGAGGTATTTTCA
*
14338418 AATTCTGTTTTTCAAATTT-TGTTTTT
61 AATTCTGTTTTTC-AATTTATGTTTGT
* * ** * *
14338444 CCAAAAAATCAACTCATATTGCGATAGGTGATTTCTGCCTCAGGACACGCTGAGATATTTTCAAT
1 ---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAAA
*
14338509 TTCTTTTTTTCAATTTATGTTTGT
63 TTCTGTTTTTCAATTTATGTTTGT
* * *
14338533 CAAAAAAATCAACTCGTAATGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCA
1 ---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACGCTGAGGTATTTTCA
*
14338598 ATTGATT-TTTTTTTCAATTTATGCTTTGT
61 A---ATTCTGTTTTTCAATTTATG-TTTGT
* ** * *
14338627 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGTCACATACCGAGGTATTTTCAAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAAAT
*
14338692 TCTGTTTTACAAATTT-TGTTT-T
64 TCTGTTTTTC-AATTTATGTTTGT
* * * * * *
14338714 AAAAATCAACTCATATTGTGAGAAGTGAGTTGAGCCT-TGGCTCACGTGCTGAGCTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACAC--GCTGAGGTATTTTCAAA
14338778 TTCTGTTTTT-AATGTCTA-GTTT-T
63 TTCTGTTTTTCAAT-T-TATGTTTGT
* *
14338801 AAAAAGTCAATTTATATTGCGAGA
1 AAAAA-TCAACTCATATTGCGAGA
14338825 AATGAGTTAA
Statistics
Matches: 382, Mismatches: 64, Indels: 45
0.78 0.13 0.09
Matches are distributed among these distances:
85 6 0.02
86 3 0.01
87 99 0.26
88 27 0.07
89 78 0.20
90 9 0.02
91 132 0.35
92 5 0.01
93 16 0.04
94 7 0.02
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (86 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAAATTC
TGTTTTTCAATTTATGTTTGT
Found at i:14338666 original size:180 final size:178
Alignment explanation
Indices: 14338269--14338787 Score: 443
Period size: 180 Copynumber: 2.9 Consensus size: 178
14338259 TCTTTCAAAA
* * * * * * *
14338269 AAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA--AGATGCTGAGGTGTTTTCCATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTCAATTTC
* * * * *
14338332 TGTTCTTCAATTTCTGTGTTTCAAAAAAATCAGCTCATATTACGAGTGGAGAGTTGAGCCTTGAC
66 TGTTCTTCAATTTATGTGTTTCAAAAAAATCAACTCATAATACGAGAGGAGAGTTGAGCCTAGAC
*
14338397 TCACACGCTGAGGTATTTTAAAATTCTGTTTTTCAAATTTTGTTTTTCC
131 TCACACGCTGAGGTATTTTAAAATTCTGTTTTTCAAATTTTGTTTGT-C
* * **
14338446 AAAAAATCAACTCATATTGCGATAGGTGATTTCTGCCTCAGGACACGCTGAGATATTTTCAATTT
1 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTCAATTT
* * * * *
14338511 CTTTTTTTCAATTTATGT-TTGTCAAAAAAATCAACTCGTAATGCGAGAGGTGAGTTGAGCCTCA
65 CTGTTCTTCAATTTATGTGTT-TCAAAAAAATCAACTCATAATACGAGAGGAGAGTTGAGCCT-A
* *
14338575 GA-TCACACGCTGAGGTATTTTCAATTGATT-TTTTTTTC-AATTTATGCTTTGT-
128 GACTCACACGCTGAGGTATTTT-AA--AATTCTGTTTTTCAAATTT-TG-TTTGTC
* ** * * **
14338627 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGTCACATACCGAGGTATTTTCAAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGATATTTTCAATT
* ** * *
14338692 TCTGTT-TTACAAATTT-TGT-TTT---AAAAATCAACTCATATTGTGAGAAGTGAGTTGAGCCT
64 TCTGTTCTT-C-AATTTATGTGTTTCAAAAAAATCAACTCATAATACGAGAGGAGAGTTGAGCCT
* * ** * * *
14338751 TGGCTCACGTGCTGAGCTATTTTCAATTTCTGTTTTT
127 AGACTCACACGCTGAGGTATTTTAAAATTCTGTTTTT
14338788 AATGTCTAGT
Statistics
Matches: 277, Mismatches: 49, Indels: 32
0.77 0.14 0.09
Matches are distributed among these distances:
175 2 0.01
176 6 0.02
177 2 0.01
178 82 0.30
179 2 0.01
180 123 0.44
181 12 0.04
182 36 0.13
183 12 0.04
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.37
Consensus pattern (178 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTCAATTTC
TGTTCTTCAATTTATGTGTTTCAAAAAAATCAACTCATAATACGAGAGGAGAGTTGAGCCTAGAC
TCACACGCTGAGGTATTTTAAAATTCTGTTTTTCAAATTTTGTTTGTC
Found at i:14339510 original size:18 final size:18
Alignment explanation
Indices: 14339487--14339540 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
14339477 CCACCACCAA
14339487 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
*
14339505 CT-C-C-A-CCA-AC-TA
1 CTCCACTAGCCACACTTG
14339517 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
14339535 CTCCAC
1 CTCCAC
14339541 CACCTACTCC
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 3 0.11
13 3 0.11
14 4 0.14
15 2 0.07
16 4 0.14
17 3 0.11
18 9 0.32
ACGTcount: A:0.24, C:0.48, G:0.07, T:0.20
Consensus pattern (18 bp):
CTCCACTAGCCACACTTG
Found at i:14339520 original size:30 final size:30
Alignment explanation
Indices: 14339477--14339574 Score: 169
Period size: 30 Copynumber: 3.3 Consensus size: 30
14339467 CTAGCCTTTG
*
14339477 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCTACTCCACTAGCCACACTTGCT
*
14339507 CCACCAACTACTCCACTAGCCACACTTGCT
1 CCACCACCTACTCCACTAGCCACACTTGCT
*
14339537 CCACCACCTACTCCATTAGCCACACTTGCT
1 CCACCACCTACTCCACTAGCCACACTTGCT
14339567 CCACCACC
1 CCACCACC
14339575 ACTTGTACCT
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 64 1.00
ACGTcount: A:0.26, C:0.50, G:0.06, T:0.18
Consensus pattern (30 bp):
CCACCACCTACTCCACTAGCCACACTTGCT
Found at i:14339783 original size:24 final size:24
Alignment explanation
Indices: 14339735--14339864 Score: 79
Period size: 23 Copynumber: 5.5 Consensus size: 24
14339725 CAATTTTTGT
*
14339735 TATTAT-TATATTTCTTAATATTA
1 TATTATGTATATTTCTTAATAATA
*
14339758 TATTATGTATATATTCTT-TTAATA
1 TATTATGTATAT-TTCTTAATAATA
* * **
14339782 TATTAGGTATA-TTCTAAATTCTA
1 TATTATGTATATTTCTTAATAATA
* * * *
14339805 TATTACGTATATATATT-ATACTA
1 TATTATGTATATTTCTTAATAATA
* * * *
14339828 TTTTATGTATATATCTTGGATACTA
1 TATTATGTATATTTCTT-AATAATA
*
14339853 TATTATTTATAT
1 TATTATGTATAT
14339865 ATTTTTTTTT
Statistics
Matches: 84, Mismatches: 17, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
22 4 0.05
23 38 0.45
24 21 0.25
25 21 0.25
ACGTcount: A:0.34, C:0.06, G:0.05, T:0.55
Consensus pattern (24 bp):
TATTATGTATATTTCTTAATAATA
Found at i:14339828 original size:23 final size:24
Alignment explanation
Indices: 14339802--14339866 Score: 78
Period size: 25 Copynumber: 2.7 Consensus size: 24
14339792 ATTCTAAATT
*
14339802 CTATATTACGTATATATATT-ATA
1 CTATATTATGTATATATATTGATA
* *
14339825 CTATTTTATGTATATATCTTGGATA
1 CTATATTATGTATATATATT-GATA
*
14339850 CTATATTATTTATATAT
1 CTATATTATGTATATAT
14339867 TTTTTTTTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
23 17 0.49
25 18 0.51
ACGTcount: A:0.34, C:0.08, G:0.06, T:0.52
Consensus pattern (24 bp):
CTATATTATGTATATATATTGATA
Found at i:14339907 original size:22 final size:22
Alignment explanation
Indices: 14339882--14339923 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
14339872 TTTAAACATG
*
14339882 TTATCTTATGTATATATTTTAA
1 TTATATTATGTATATATTTTAA
*
14339904 TTATATTATGTATGTATTTT
1 TTATATTATGTATATATTTT
14339924 TTTACACTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.29, C:0.02, G:0.07, T:0.62
Consensus pattern (22 bp):
TTATATTATGTATATATTTTAA
Found at i:14339934 original size:26 final size:26
Alignment explanation
Indices: 14339888--14339941 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
14339878 CATGTTATCT
*
14339888 TATGTATATATTTTAATTATATTATG
1 TATGTATATATTTTAACTATATTATG
*
14339914 TATGTAT-TTTTTTACACTATATTATG
1 TATGTATATATTTTA-ACTATATTATG
14339940 TA
1 TA
14339942 CATTTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.31, C:0.04, G:0.07, T:0.57
Consensus pattern (26 bp):
TATGTATATATTTTAACTATATTATG
Found at i:14340042 original size:25 final size:24
Alignment explanation
Indices: 14340014--14340069 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
14340004 GTTATATTTT
*
14340014 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
14340039 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
14340062 CACTATTA
1 CACTATTA
14340070 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:14341204 original size:25 final size:25
Alignment explanation
Indices: 14341170--14341224 Score: 101
Period size: 25 Copynumber: 2.2 Consensus size: 25
14341160 TTAGGCTCAT
14341170 CTCGCGTCGGCGAGCCTCCACATAA
1 CTCGCGTCGGCGAGCCTCCACATAA
*
14341195 CTCGCGTCGGTGAGCCTCCACATAA
1 CTCGCGTCGGCGAGCCTCCACATAA
14341220 CTCGC
1 CTCGC
14341225 CCCCACATAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.18, C:0.40, G:0.24, T:0.18
Consensus pattern (25 bp):
CTCGCGTCGGCGAGCCTCCACATAA
Found at i:14346220 original size:18 final size:18
Alignment explanation
Indices: 14346182--14346220 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
14346172 AAAAGAAAAA
* *
14346182 AAATAAAAGTACAACTAG
1 AAATAAAAGTAAAAATAG
*
14346200 AAATAAAAGTAAAAATCG
1 AAATAAAAGTAAAAATAG
14346218 AAA
1 AAA
14346221 GTTAAATAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.67, C:0.08, G:0.10, T:0.15
Consensus pattern (18 bp):
AAATAAAAGTAAAAATAG
Found at i:14348556 original size:20 final size:20
Alignment explanation
Indices: 14348514--14348557 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
14348504 TTTTGTAAAG
* *
14348514 TTTGTAAAATAAATGGTACT
1 TTTGTAAAATAAATGGAAAT
14348534 TTTGTAAAA-ACAATGGAAAT
1 TTTGTAAAATA-AATGGAAAT
14348554 TTTG
1 TTTG
14348558 GGTTGCTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 1 0.05
20 20 0.95
ACGTcount: A:0.41, C:0.05, G:0.16, T:0.39
Consensus pattern (20 bp):
TTTGTAAAATAAATGGAAAT
Found at i:14349174 original size:46 final size:47
Alignment explanation
Indices: 14349012--14349186 Score: 157
Period size: 46 Copynumber: 3.7 Consensus size: 47
14349002 TGATATGTGT
* * *
14349012 GCTAGTGTAAGACATGTCTAGGACATACATCGGCCACATT---ACAAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-C-CATTGAGACGAGA
* * *
14349058 GCTAGTGTAAGACATGTCTGGAACATGCATCGGTC-TCGAGA-GATGCAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATTGAGACGA-G--A
*
14349106 G-TCAGTGTAAGACATGTTTGGGACATGCATCGG-CATTGAGACGAGA
1 GCT-AGTGTAAGACATGTCTGGGACATGCATCGGCCATTGAGACGAGA
* * *
14349152 GCTAGTGTAAGACATGCCTGGGACATACGTCGGCC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC
14349187 TCGCGATATA
Statistics
Matches: 105, Mismatches: 13, Indels: 21
0.76 0.09 0.15
Matches are distributed among these distances:
43 1 0.01
44 1 0.01
45 1 0.01
46 60 0.57
47 4 0.04
48 36 0.34
49 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATTGAGACGAGA
Found at i:14349207 original size:94 final size:92
Alignment explanation
Indices: 14349012--14349231 Score: 237
Period size: 94 Copynumber: 2.3 Consensus size: 92
14349002 TGATATGTGT
* * *
14349012 GCTAGTGTAAGACATGTCTAGGACATACATCGGCCACATTACAAGAGCTAGTGTAAGACATGTCT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-C-CATTACAAGAGCTAGTGTAAGACATGCCT
* * *
14349077 GGAACATGCATCGGTCTCGAGAGATGCAA
64 GGAACATACATCGGCCTCGAGAGATACAA
* *
14349106 G-TCAGTGTAAGACATGTTTGGGACATGCATCGG-CATTGAGACGAGAGCTAGTGTAAGACATGC
1 GCT-AGTGTAAGACATGTCTGGGACATGCATCGGCCATT---ACAAGAGCTAGTGTAAGACATGC
* * * *
14349169 CTGGGACATACGTCGGCCTCGCGATATACAA
62 CTGGAACATACATCGGCCTCGAGAGATACAA
* *
14349200 GCTAGTGTAAGACCTGTCAGGGACATGGCATC
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATC
14349232 AGCTTGTTGT
Statistics
Matches: 105, Mismatches: 15, Indels: 11
0.80 0.11 0.08
Matches are distributed among these distances:
91 4 0.04
93 1 0.01
94 94 0.90
95 6 0.06
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.22
Consensus pattern (92 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATTACAAGAGCTAGTGTAAGACATGCCTGG
AACATACATCGGCCTCGAGAGATACAA
Found at i:14349260 original size:44 final size:46
Alignment explanation
Indices: 14349203--14349369 Score: 169
Period size: 49 Copynumber: 3.6 Consensus size: 46
14349193 TATACAAGCT
* *
14349203 AGTGTAAGACCTGTCAGGGACATGGCATCAG-CTTGTTGTG-TGTC
1 AGTGTAAAACCTGTCTGGGACATGGCATCAGACTTGTTGTGATGTC
* * * *
14349247 AGTGTAAGACCTGTCTGGGACATGGCATCAGCCTTGATATATGAAAGTC
1 AGTGTAAAACCTGTCTGGGACATGGCATCAGACTTG-T-TGTG-ATGTC
* * * *
14349296 AGTGTAAAACCTGTCCGGGACATGGCATC-GACTTTGATGTGCTAGCC
1 AGTGTAAAACCTGTCTGGGACATGGCATCAGAC-TTGTTGTGAT-GTC
14349343 AGTGTAAAACCATGTCTGGGACATGGC
1 AGTGTAAAACC-TGTCTGGGACATGGC
14349370 GTCAACATCT
Statistics
Matches: 103, Mismatches: 12, Indels: 12
0.81 0.09 0.09
Matches are distributed among these distances:
44 30 0.29
45 4 0.04
46 1 0.01
47 19 0.18
48 16 0.16
49 33 0.32
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (46 bp):
AGTGTAAAACCTGTCTGGGACATGGCATCAGACTTGTTGTGATGTC
Found at i:14349309 original size:49 final size:45
Alignment explanation
Indices: 14349203--14349369 Score: 169
Period size: 44 Copynumber: 3.6 Consensus size: 45
14349193 TATACAAGCT
* * *
14349203 AGTGTAAGACCTGTCAGGGACATGGCATCAGCTTGT-TGTGTGTC
1 AGTGTAAAACCTGTCTGGGACATGGCATCAGCTTGTATGTGAGTC
* *
14349247 AGTGTAAGACCTGTCTGGGACATGGCATCAGCCTTGATATATGAAAGTC
1 AGTGTAAAACCTGTCTGGGACATGGCATCAG-CTTG-TATGTG--AGTC
* *
14349296 AGTGTAAAACCTGTCCGGGACATGGCATC-GACTT-TGATGTGCTAGCC
1 AGTGTAAAACCTGTCTGGGACATGGCATCAG-CTTGT-ATGTG--AGTC
14349343 AGTGTAAAACCATGTCTGGGACATGGC
1 AGTGTAAAACC-TGTCTGGGACATGGC
14349370 GTCAACATCT
Statistics
Matches: 105, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
44 30 0.29
45 4 0.04
46 2 0.02
47 21 0.20
48 18 0.17
49 30 0.29
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (45 bp):
AGTGTAAAACCTGTCTGGGACATGGCATCAGCTTGTATGTGAGTC
Found at i:14354537 original size:20 final size:20
Alignment explanation
Indices: 14354494--14354537 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
14354484 TGGCTTTGAC
*
14354494 AGTTTTGAAATATTTGATTA
1 AGTTTTGAAATATTTGAATA
*
14354514 AGTTTTGAAA-ATTTTGAATG
1 AGTTTTGAAATA-TTTGAATA
14354534 AGTT
1 AGTT
14354538 CGGTTTAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 1 0.05
20 20 0.95
ACGTcount: A:0.34, C:0.00, G:0.18, T:0.48
Consensus pattern (20 bp):
AGTTTTGAAATATTTGAATA
Found at i:14360821 original size:22 final size:21
Alignment explanation
Indices: 14360766--14360814 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
14360756 ATTAACTATC
14360766 GAAACTTTAAAATTTTTCAAT
1 GAAACTTTAAAATTTTTCAAT
*
14360787 GAAACTTTAAAATTTTTTAAT
1 GAAACTTTAAAATTTTTCAAT
*
14360808 GACACTT
1 GAAACTT
14360815 CGTAAATATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.41, C:0.10, G:0.06, T:0.43
Consensus pattern (21 bp):
GAAACTTTAAAATTTTTCAAT
Found at i:14366255 original size:19 final size:19
Alignment explanation
Indices: 14366231--14366267 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
14366221 TCCAAACACC
14366231 AGAAAAGTAAATCATTTTT
1 AGAAAAGTAAATCATTTTT
*
14366250 AGAAAAGTAAATTATTTT
1 AGAAAAGTAAATCATTTT
14366268 CCAGAAATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.49, C:0.03, G:0.11, T:0.38
Consensus pattern (19 bp):
AGAAAAGTAAATCATTTTT
Found at i:14367029 original size:29 final size:29
Alignment explanation
Indices: 14366997--14367076 Score: 81
Period size: 29 Copynumber: 2.7 Consensus size: 29
14366987 GAATTGAATC
*
14366997 AAATTAAAATTTCAT-TATAAAATTGCACA
1 AAATT-AAAGTTCATATATAAAATTGCACA
* *
14367026 AAATTAAAGTTCATATATACAATTGCATA
1 AAATTAAAGTTCATATATAAAATTGCACA
* *
14367055 TCAAACTATAGTTCATATATAA
1 --AAATTAAAGTTCATATATAA
14367077 TTTTGAGATT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
28 8 0.19
29 17 0.40
31 17 0.40
ACGTcount: A:0.49, C:0.11, G:0.05, T:0.35
Consensus pattern (29 bp):
AAATTAAAGTTCATATATAAAATTGCACA
Found at i:14367619 original size:42 final size:38
Alignment explanation
Indices: 14367518--14367634 Score: 209
Period size: 38 Copynumber: 3.1 Consensus size: 38
14367508 GATAAAAAGA
14367518 CCATTTACATTCAACTTTTGATTGATTACCCCTCTCTG
1 CCATTTACATTCAACTTTTGATTGATTACCCCTCTCTG
14367556 CCATTTACATTCAACTTTTGATTGATTACCCCTCTCTG
1 CCATTTACATTCAACTTTTGATTGATTACCCCTCTCTG
*
14367594 CCATTTCCATTCAACTTTTGATTGATTACCTCC-CTCTG
1 CCATTTACATTCAACTTTTGATTGATTACC-CCTCTCTG
14367632 CCA
1 CCA
14367635 CCACTTTCTC
Statistics
Matches: 77, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
38 75 0.97
39 2 0.03
ACGTcount: A:0.21, C:0.31, G:0.08, T:0.41
Consensus pattern (38 bp):
CCATTTACATTCAACTTTTGATTGATTACCCCTCTCTG
Found at i:14367851 original size:52 final size:53
Alignment explanation
Indices: 14367699--14367852 Score: 197
Period size: 53 Copynumber: 2.9 Consensus size: 53
14367689 TGCGACTCTC
* *
14367699 TTTCTTAATAATGG-GGGTAGGGATTGAAATCAATGATCTTCAGAACTACATGG
1 TTTCTTAATAA-GGTGGGTAGGCATCGAAATCAATGATCTTCAGAACTACATGG
** * *
14367752 TTTCTTAATAACATTGGTAGGCATC-ATAATAAATGATCTTCAGAACTACATGG
1 TTTCTTAATAAGGTGGGTAGGCATCGA-AATCAATGATCTTCAGAACTACATGG
* *
14367805 TTTCTTAATAAGGTGGGT-GGCATCGAAATCAATGACCTTCATAACTAC
1 TTTCTTAATAAGGTGGGTAGGCATCGAAATCAATGATCTTCAGAACTAC
14367853 GTGGCTCCTA
Statistics
Matches: 86, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
52 26 0.30
53 60 0.70
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.32
Consensus pattern (53 bp):
TTTCTTAATAAGGTGGGTAGGCATCGAAATCAATGATCTTCAGAACTACATGG
Found at i:14368274 original size:22 final size:21
Alignment explanation
Indices: 14368249--14368297 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
14368239 AAATGGTAGC
14368249 AAAATAGTGAA-AAAATAATAA
1 AAAATAGT-AACAAAATAATAA
*
14368270 GAAAAGAGTAACAAAATAATAA
1 -AAAATAGTAACAAAATAATAA
14368292 AAAATA
1 AAAATA
14368298 ACAATAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 7 0.29
22 17 0.71
ACGTcount: A:0.71, C:0.02, G:0.10, T:0.16
Consensus pattern (21 bp):
AAAATAGTAACAAAATAATAA
Found at i:14369010 original size:147 final size:147
Alignment explanation
Indices: 14368743--14369042 Score: 530
Period size: 147 Copynumber: 2.0 Consensus size: 147
14368733 ACAGATATAG
*
14368743 AAAAATTCAACATTGCAAAGTAGGTGTTGTCGAAATGTCAGACAGCACTCCCCAAATTCCCCCCA
1 AAAAATTCAACATTGCAAAGCAGGTGTTGTCGAAATGTCAGACAGCACTCCCCAAATTCCCCCCA
*
14368808 ATCATTCAGCTATCATTACATTTAAAAAGAAAATAATTTTTTGTACCGCCACTGTATCAGGCAGC
66 ATCATTCAACTATCATTACATTTAAAAAGAAAATAATTTTTTGTACCGCCACTGTATCAGGCAGC
14368873 ACCGGTATGTATTTTAT
131 ACCGGTATGTATTTTAT
* *
14368890 AAAAATTCAACATTGCACAA-CAGGTGTTGTCGAAATGTCAGGCAGCACTCCCCAAATTTCCCCC
1 AAAAATTCAACATTGCA-AAGCAGGTGTTGTCGAAATGTCAGACAGCACTCCCCAAATTCCCCCC
* *
14368954 AATCATTCAACTATCCTTACATTTAAAAAGAAAATAATTTTTTGTACTGCCACTGTATCAGGCAG
65 AATCATTCAACTATCATTACATTTAAAAAGAAAATAATTTTTTGTACCGCCACTGTATCAGGCAG
14369019 CACCGGTATGTATTTTAT
130 CACCGGTATGTATTTTAT
14369037 AAAAAT
1 AAAAAT
14369043 ACTCGAAAAT
Statistics
Matches: 146, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
147 144 0.99
148 2 0.01
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (147 bp):
AAAAATTCAACATTGCAAAGCAGGTGTTGTCGAAATGTCAGACAGCACTCCCCAAATTCCCCCCA
ATCATTCAACTATCATTACATTTAAAAAGAAAATAATTTTTTGTACCGCCACTGTATCAGGCAGC
ACCGGTATGTATTTTAT
Found at i:14369362 original size:16 final size:16
Alignment explanation
Indices: 14369343--14369376 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
14369333 ATGTGCCAGA
14369343 TATATTATCTTATGTG
1 TATATTATCTTATGTG
14369359 TATATTATCTTATGTG
1 TATATTATCTTATGTG
14369375 TA
1 TA
14369377 ATACCATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.26, C:0.06, G:0.12, T:0.56
Consensus pattern (16 bp):
TATATTATCTTATGTG
Found at i:14372163 original size:22 final size:22
Alignment explanation
Indices: 14372135--14372178 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
14372125 AAGTATTTTG
14372135 TAACTCAAACAACTAACTTATA
1 TAACTCAAACAACTAACTTATA
*
14372157 TAACTCAAACATCTAACTTATA
1 TAACTCAAACAACTAACTTATA
14372179 ATCTAACATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.48, C:0.23, G:0.00, T:0.30
Consensus pattern (22 bp):
TAACTCAAACAACTAACTTATA
Found at i:14372264 original size:33 final size:33
Alignment explanation
Indices: 14372227--14372297 Score: 133
Period size: 33 Copynumber: 2.2 Consensus size: 33
14372217 TAATGATTAG
14372227 TTTAATTTTTTCCTAAATAAAATGAAATTCTAA
1 TTTAATTTTTTCCTAAATAAAATGAAATTCTAA
*
14372260 TTTAATTTTTTCCTAAATAAAATGTAATTCTAA
1 TTTAATTTTTTCCTAAATAAAATGAAATTCTAA
14372293 TTTAA
1 TTTAA
14372298 AATTTTTTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.41, C:0.08, G:0.03, T:0.48
Consensus pattern (33 bp):
TTTAATTTTTTCCTAAATAAAATGAAATTCTAA
Found at i:14372588 original size:20 final size:20
Alignment explanation
Indices: 14372560--14372758 Score: 139
Period size: 20 Copynumber: 9.9 Consensus size: 20
14372550 CTATAATTTC
* *
14372560 GTGCCCCTGTTTGTACTTTG
1 GTGCCCCTGATTGCACTTTG
* * *
14372580 GTACCCCTGATTACACTTTC
1 GTGCCCCTGATTGCACTTTG
* * *
14372600 GTGCCCCTGTTTGTACTTTA
1 GTGCCCCTGATTGCACTTTG
* * * *
14372620 ATGCCCCTGATAGCACTCTC
1 GTGCCCCTGATTGCACTTTG
* * * *
14372640 ATGCCCCTGTTTGTACTTTT
1 GTGCCCCTGATTGCACTTTG
*
14372660 GTACCCCTGATTGCA-TTTAG
1 GTGCCCCTGATTGCACTTT-G
* *
14372680 GTGCCCCTGTTTGCACTTCG
1 GTGCCCCTGATTGCACTTTG
* * **
14372700 GTACCCATGATTGCACTTAC
1 GTGCCCCTGATTGCACTTTG
* * *
14372720 ATGCCCCTGTTTGTACTTTG
1 GTGCCCCTGATTGCACTTTG
*
14372740 GTACCCCTGATTGCACTTT
1 GTGCCCCTGATTGCACTTT
14372759 CATGCCCTTT
Statistics
Matches: 132, Mismatches: 45, Indels: 4
0.73 0.25 0.02
Matches are distributed among these distances:
19 3 0.02
20 127 0.96
21 2 0.02
ACGTcount: A:0.14, C:0.30, G:0.18, T:0.38
Consensus pattern (20 bp):
GTGCCCCTGATTGCACTTTG
Found at i:14372611 original size:40 final size:40
Alignment explanation
Indices: 14372556--14372765 Score: 271
Period size: 40 Copynumber: 5.2 Consensus size: 40
14372546 TATTCTATAA
* *
14372556 TTTCGTGCCCCTGTTTGTACTTTGGTACCCCTGATTACAC
1 TTTCATGCCCCTGTTTGTACTTTGGTACCCCTGATTGCAC
* ** * *
14372596 TTTCGTGCCCCTGTTTGTACTTTAATGCCCCTGATAGCAC
1 TTTCATGCCCCTGTTTGTACTTTGGTACCCCTGATTGCAC
* *
14372636 TCTCATGCCCCTGTTTGTACTTTTGTACCCCTGATTGCA-
1 TTTCATGCCCCTGTTTGTACTTTGGTACCCCTGATTGCAC
* * *
14372675 TTT-AGGTGCCCCTGTTTGCACTTCGGTACCCATGATTGCAC
1 TTTCA--TGCCCCTGTTTGTACTTTGGTACCCCTGATTGCAC
*
14372716 TTACATGCCCCTGTTTGTACTTTGGTACCCCTGATTGCAC
1 TTTCATGCCCCTGTTTGTACTTTGGTACCCCTGATTGCAC
14372756 TTTCATGCCC
1 TTTCATGCCC
14372766 TTTTTTATAC
Statistics
Matches: 145, Mismatches: 21, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
38 1 0.01
39 2 0.01
40 139 0.96
41 2 0.01
42 1 0.01
ACGTcount: A:0.14, C:0.30, G:0.18, T:0.38
Consensus pattern (40 bp):
TTTCATGCCCCTGTTTGTACTTTGGTACCCCTGATTGCAC
Found at i:14377916 original size:9 final size:9
Alignment explanation
Indices: 14377902--14377983 Score: 83
Period size: 9 Copynumber: 9.1 Consensus size: 9
14377892 GTAGTAGATG
14377902 CAGTAGGAA
1 CAGTAGGAA
* *
14377911 CGGTAGAAA
1 CAGTAGGAA
*
14377920 CAGCAGGAA
1 CAGTAGGAA
* *
14377929 CTGTAGGAG
1 CAGTAGGAA
14377938 CAGTAGGAA
1 CAGTAGGAA
*
14377947 CAATAGGAA
1 CAGTAGGAA
14377956 CAGTAGGAA
1 CAGTAGGAA
*
14377965 CAATAGGAA
1 CAGTAGGAA
* *
14377974 TAGTAAGAA
1 CAGTAGGAA
14377983 C
1 C
14377984 TGTAATAGAG
Statistics
Matches: 56, Mismatches: 17, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
9 56 1.00
ACGTcount: A:0.45, C:0.12, G:0.30, T:0.12
Consensus pattern (9 bp):
CAGTAGGAA
Found at i:14377916 original size:18 final size:17
Alignment explanation
Indices: 14377895--14377947 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 17
14377885 AGTATTAGTA
14377895 GTAGATGCAGTAGGAACG
1 GTAGA-GCAGTAGGAACG
* * *
14377913 GTAGAAACAGCAGGAACT
1 GTAG-AGCAGTAGGAACG
14377931 GTAGGAGCAGTAGGAAC
1 GTA-GAGCAGTAGGAAC
14377948 AATAGGAACA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
18 26 0.93
19 2 0.07
ACGTcount: A:0.38, C:0.13, G:0.36, T:0.13
Consensus pattern (17 bp):
GTAGAGCAGTAGGAACG
Found at i:14379661 original size:28 final size:29
Alignment explanation
Indices: 14379629--14379683 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
14379619 CTTATTCAAT
* *
14379629 AACAGTA-CAGTCTGGGCCTTAGCCCTTA
1 AACAGTAGCAGTATGGGCCTAAGCCCTTA
*
14379657 AACAGTAGTAGTATGGGCCTAAGCCCT
1 AACAGTAGCAGTATGGGCCTAAGCCCT
14379684 AATTCAGTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 7 0.30
29 16 0.70
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24
Consensus pattern (29 bp):
AACAGTAGCAGTATGGGCCTAAGCCCTTA
Found at i:14379777 original size:30 final size:30
Alignment explanation
Indices: 14379697--14379779 Score: 132
Period size: 31 Copynumber: 2.7 Consensus size: 30
14379687 TCAGTCTCGA
14379697 CATAT-ACTGGACCGAAGCCTTTTCATAAAT
1 CATATCACTGG-CCGAAGCCTTTTCATAAAT
14379727 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACT-GGCCGAAGCCTTTTCATAAAT
*
14379758 CATATCACTGGCTGAAGCCTTT
1 CATATCACTGGCCGAAGCCTTT
14379780 ACTGTAAGCT
Statistics
Matches: 50, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
30 17 0.34
31 31 0.62
32 2 0.04
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (30 bp):
CATATCACTGGCCGAAGCCTTTTCATAAAT
Found at i:14380027 original size:25 final size:25
Alignment explanation
Indices: 14379999--14380068 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
14379989 CTCTTTTAAT
* *
14379999 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTAGGGCAAAGCCCTTTTCGATA
*
14380024 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGATA
*
14380049 AACTAGGGCATAGCCCTTTT
1 AACTAGGGCAAAGCCCTTTT
14380069 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTCGATA
Found at i:14380863 original size:27 final size:27
Alignment explanation
Indices: 14380833--14380897 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
14380823 GGGCATATTT
*
14380833 GTCATTTTACCATACAAGGG-TATTATG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
14380860 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
14380887 GTCTTTTTACC
1 GTCATTTTACC
14380898 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:14380981 original size:27 final size:27
Alignment explanation
Indices: 14380951--14381057 Score: 85
Period size: 27 Copynumber: 3.9 Consensus size: 27
14380941 GTAAATCTAC
14380951 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
* *
14380978 AAACCAATGGTATTTCTA-TGATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* **
14381004 AGAAAGTCAAGGGTATTTTTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* **
14381034 AAATC-AGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTCAGTAATTTT
14381058 ACAAATTGAG
Statistics
Matches: 66, Mismatches: 8, Indels: 13
0.76 0.09 0.15
Matches are distributed among these distances:
26 19 0.29
27 23 0.35
28 7 0.11
29 16 0.24
30 1 0.02
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.43
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:14381081 original size:27 final size:25
Alignment explanation
Indices: 14381013--14381163 Score: 104
Period size: 27 Copynumber: 5.7 Consensus size: 25
14381003 TAGAAAGTCA
** **
14381013 AGGGTATTTTTGTAATTTTGTAAAT
1 AGGGTATTTCGGTAATTTTACAAAT
*
14381038 CAGGGTATTTTGGTAATTTTACAAATT
1 -AGGGTATTTCGGTAATTTTACAAA-T
* * *
14381065 GAGGGTATTTCGATAATTTCACAAACC
1 -AGGGTATTTCGGTAATTTTACAAA-T
* *
14381092 AGTAGCATTTCGGTAATTTTACAAACT
1 AG-GGTATTTCGGTAATTTTACAAA-T
* *
14381119 AGGGGTATTTTGGTAATTTTACAAGCT
1 A-GGGTATTTCGGTAATTTTACAA-AT
*
14381146 AGAGGTATTTTGGTAATT
1 AG-GGTATTTCGGTAATT
14381164 CTATCCTACA
Statistics
Matches: 102, Mismatches: 18, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
26 24 0.24
27 77 0.75
28 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.41
Consensus pattern (25 bp):
AGGGTATTTCGGTAATTTTACAAAT
Found at i:14381161 original size:54 final size:55
Alignment explanation
Indices: 14381041--14381163 Score: 144
Period size: 54 Copynumber: 2.3 Consensus size: 55
14381031 TGTAAATCAG
*
14381041 GGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGATAATTTCACAAACCAGTA
1 GGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGATAATTTCACAAACCAGTA
* * * * * * *
14381096 -GCATTTCGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTTACAAGCTAG-A
1 GGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTCGATAATTTCACAAACCAGTA
14381149 GGTATTTTGGTAATT
1 GGTATTTTGGTAATT
14381164 CTATCCTACA
Statistics
Matches: 56, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
53 1 0.02
54 53 0.95
55 2 0.04
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (55 bp):
GGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGATAATTTCACAAACCAGTA
Found at i:14381182 original size:27 final size:27
Alignment explanation
Indices: 14381040--14381163 Score: 115
Period size: 27 Copynumber: 4.6 Consensus size: 27
14381030 TTGTAAATCA
* *
14381040 GGGTATTTTGGTAATTTTACAA-ATTG
1 GGGTATTTTGGTAATTTTACAAGCTAG
* * * * *
14381066 AGGGTATTTCGATAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAGCTAG
** * * *
14381094 TAGCATTTCGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAGCTAG
14381121 GGGTATTTTGGTAATTTTACAAGCTAG
1 GGGTATTTTGGTAATTTTACAAGCTAG
*
14381148 AGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
14381164 CTATCCTACA
Statistics
Matches: 78, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
27 77 0.99
28 1 0.01
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAGCTAG
Found at i:14381236 original size:27 final size:27
Alignment explanation
Indices: 14381195--14381394 Score: 222
Period size: 27 Copynumber: 7.4 Consensus size: 27
14381185 GTAATTTCAT
* *
14381195 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* ** *
14381222 AA-CTGAAGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACAGTAATTCTGTA
* *
14381249 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* * *
14381276 AATCGAAGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* *
14381303 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
14381330 AATCGAGGGTGAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* * *
14381357 AATCAAGGGTAAAACAGTGATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
14381384 AATTGAGGGTA
1 AATCGAGGGTA
14381395 CTTTGGTAAT
Statistics
Matches: 148, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 1 0.01
27 146 0.99
28 1 0.01
ACGTcount: A:0.41, C:0.07, G:0.23, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTGTA
Found at i:14381314 original size:81 final size:81
Alignment explanation
Indices: 14381183--14381394 Score: 270
Period size: 81 Copynumber: 2.6 Consensus size: 81
14381173 AGGGGTATTT
* * * * *
14381183 CAGTAATT-TCAT-AATCGAGGGTAAAATAGTAATTTTGTAAA-CTGAAGGTAAAATGGTAATTT
1 CAGTAATTCT-ATAAATCGAAGGTAAAATAGTAATTCTATAAATC-GAGGGTAAAACGGTAATTT
14381245 TGTAAATCGAGGGTAAAA
64 TGTAAATCGAGGGTAAAA
*
14381263 CGGTAATTCTATAAATCGAAGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTG
1 CAGTAATTCTATAAATCGAAGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTG
*
14381328 TAAATCGAGGGTGAAA
66 TAAATCGAGGGTAAAA
* * * *
14381344 CAGTAATTCTGTAAATC-AAGGGTAAAACAGTGATTCTATAAATTGAGGGTA
1 CAGTAATTCTATAAATCGAA-GGTAAAATAGTAATTCTATAAATCGAGGGTA
14381395 CTTTGGTAAT
Statistics
Matches: 116, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
80 11 0.09
81 104 0.90
82 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.30
Consensus pattern (81 bp):
CAGTAATTCTATAAATCGAAGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTG
TAAATCGAGGGTAAAA
Found at i:14389556 original size:15 final size:16
Alignment explanation
Indices: 14389536--14389565 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14389526 TTCACTAATA
14389536 TGTC-TTTTATATTTC
1 TGTCTTTTTATATTTC
14389551 TGTCTTTTTATATTT
1 TGTCTTTTTATATTT
14389566 TACATGCATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.13, C:0.10, G:0.07, T:0.70
Consensus pattern (16 bp):
TGTCTTTTTATATTTC
Found at i:14391210 original size:19 final size:20
Alignment explanation
Indices: 14391173--14391211 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
14391163 GTGATTTTTG
* *
14391173 GAAAAATTAATTTTGATCAA
1 GAAAAATTAATATTAATCAA
14391193 GAAAAATTAA-ATTAATCAA
1 GAAAAATTAATATTAATCAA
14391212 ATCAGTTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.56, C:0.05, G:0.08, T:0.31
Consensus pattern (20 bp):
GAAAAATTAATATTAATCAA
Found at i:14391739 original size:62 final size:59
Alignment explanation
Indices: 14391666--14391782 Score: 162
Period size: 62 Copynumber: 1.9 Consensus size: 59
14391656 AGTGATTATC
* * * * *
14391666 TTAATATTAAATTTAATTTAATGTTTATCCTGTAGATAAACATTCTATTATTTTAATAAGAT
1 TTAATATTAAATTTAATCTAATATTTAT-CTG--GATAAAAATTATATTAATTTAATAAGAT
14391728 TTAATATTAAATTTAATCTAATATTTATCTGGATAAAAATTATATTAATTTAATA
1 TTAATATTAAATTTAATCTAATATTTATCTGGATAAAAATTATATTAATTTAATA
14391783 TTAAAGTGAT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
59 21 0.42
61 3 0.06
62 26 0.52
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.48
Consensus pattern (59 bp):
TTAATATTAAATTTAATCTAATATTTATCTGGATAAAAATTATATTAATTTAATAAGAT
Found at i:14394731 original size:28 final size:28
Alignment explanation
Indices: 14394699--14394811 Score: 140
Period size: 28 Copynumber: 4.0 Consensus size: 28
14394689 TACCTATATT
*
14394699 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAAGCCCAATCACATTCATA
*
14394727 TGGCCCATTAAGCCCAATCACCTGT-ATA
1 TGGCCCATTAAGCCCAATCACAT-TCATA
* *
14394755 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAAGCCC-AATCACATTCATA
* *
14394784 TGGCCCATTAGGCCC-GTCACATTCATA
1 TGGCCCATTAAGCCCAATCACATTCATA
14394811 T
1 T
14394812 TCATGCTCAC
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
27 11 0.14
28 39 0.51
29 26 0.34
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.27
Consensus pattern (28 bp):
TGGCCCATTAAGCCCAATCACATTCATA
Found at i:14394786 original size:57 final size:56
Alignment explanation
Indices: 14394690--14394798 Score: 155
Period size: 57 Copynumber: 1.9 Consensus size: 56
14394680 AATTTCACAT
* *
14394690 ACCTATATTTGGCCCATTAAGCCCAATCATATTCATATGGCCCATTAAGCCCAATC
1 ACCTATATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAAGCCCAATC
* * * *
14394746 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCATTAGGCCC
1 ACCTATATATGGCCCATTAAGCCC-AATCACATTCATATGGCCCATTAAGCCC
14394799 GTCACATTCA
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
56 21 0.46
57 25 0.54
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.28
Consensus pattern (56 bp):
ACCTATATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAAGCCCAATC
Found at i:14395047 original size:16 final size:16
Alignment explanation
Indices: 14395026--14395064 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
14395016 CCAAACTTTT
14395026 AGCTTTTCGACATTTC
1 AGCTTTTCGACATTTC
*
14395042 AGCTTTTCGACTTTTC
1 AGCTTTTCGACATTTC
*
14395058 GGCTTTT
1 AGCTTTT
14395065 GCCAATACAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.13, C:0.23, G:0.15, T:0.49
Consensus pattern (16 bp):
AGCTTTTCGACATTTC
Found at i:14396363 original size:16 final size:16
Alignment explanation
Indices: 14396338--14396369 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14396328 AAGTTTGAGA
*
14396338 TTTTGGGATTTTTGGG
1 TTTTGAGATTTTTGGG
14396354 TTTTGAGATTTTTGGG
1 TTTTGAGATTTTTGGG
14396370 GCATTACAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.00, G:0.34, T:0.56
Consensus pattern (16 bp):
TTTTGAGATTTTTGGG
Found at i:14404657 original size:19 final size:20
Alignment explanation
Indices: 14404633--14404697 Score: 87
Period size: 20 Copynumber: 3.3 Consensus size: 20
14404623 ATCCAAACAC
* *
14404633 CAGAAAAGCAAATCATGTT-
1 CAGAAAAGTAAATCATTTTA
14404652 CAGAAAAGTAAATCATTTTA
1 CAGAAAAGTAAATCATTTTA
* *
14404672 CTGAAAAGTAAATCATTTTC
1 CAGAAAAGTAAATCATTTTA
14404692 CAGAAA
1 CAGAAA
14404698 TCATTTTTCG
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
19 17 0.43
20 23 0.57
ACGTcount: A:0.48, C:0.14, G:0.12, T:0.26
Consensus pattern (20 bp):
CAGAAAAGTAAATCATTTTA
Found at i:14411830 original size:45 final size:45
Alignment explanation
Indices: 14411771--14412216 Score: 338
Period size: 44 Copynumber: 9.9 Consensus size: 45
14411761 GACTTGTCGC
* *
14411771 TTCAATCTGCTCCACTACAACTTCAGGGAGATAATATTTGCTATT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATT
* * * * *
14411816 TTCAATATGCTCCACTGCAACTTTAGGGAGATAAGATTCG-TGTC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATT
* * * * * *
14411860 TTCAATCTGCTCCACTGCATCTTCAAGGCGATGAGACTTG-TAAT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATT
* * * *
14411904 TTCAA-CTTACTCCACTGCAACTTTAAGGAGTTAAGGATTATAGC---T
1 TTCAATC-TGCTCCACTGCAACTTCAGGGAGATAA-GATT-T-GCTATT
* * * *
14411949 TT-AATCTGCTCTATTGCAA-TTCCAGAGAGATAAGATTTGCTATC
1 TTCAATCTGCTCCACTGCAACTT-CAGGGAGATAAGATTTGCTATT
* *
14411993 TTCAATTTGCTCAACTGCAACTTCAGGGAGATAAGATTTG-TAATT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCT-ATT
* * * * * * *
14412038 TGTAGCTTTAATTTGTTCTACTACAACTTCAGGAAAATAAGATTTGCTATC
1 T-T--C---AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATT
* * * * *
14412089 TTCAATCTGCTCTACTGCAATTTCAAGGAGATAAGATTAGCGATT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATT
* * ***
14412134 TT-AATCTACTCCACTGCAACTTCAGGGAGATAAGATTAG-TGGC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATT
14412177 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAATGATTT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAA-GATTT
14412217 CAATCCATCG
Statistics
Matches: 315, Mismatches: 64, Indels: 44
0.74 0.15 0.10
Matches are distributed among these distances:
41 2 0.01
42 1 0.00
43 9 0.03
44 146 0.46
45 113 0.36
46 4 0.01
47 1 0.00
48 2 0.01
50 1 0.00
51 35 0.11
52 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (45 bp):
TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATT
Found at i:14412207 original size:88 final size:88
Alignment explanation
Indices: 14411738--14412215 Score: 378
Period size: 89 Copynumber: 5.3 Consensus size: 88
14411728 TTAATCCGAC
* * * *
14411738 CCACTGCAACTTCAGAGG-TATAGGACTT-GTCGCTTCAATCTGCTCCACTACAACTTCAGGGAG
1 CCACTGCAACTTCAG-GGAGATAAGA-TTAGT-GCTTTAATCTGCTCCACTGCAACTTCAGGGAG
* * *
14411801 ATAATATTTGCTATTTTCAATATGCT
63 ATAAGATTTGCTATCTTCAATCTGCT
* * * * * *
14411827 CCACTGCAACTTTAGGGAGATAAGATTCGTGTCTTCAATCTGCTCCACTGCATCTTCAAGGCGAT
1 CCACTGCAACTTCAGGGAGATAAGATTAGTG-CTTTAATCTGCTCCACTGCAACTTCAGGGAGAT
* * *
14411892 GAGACTTG-TAAT-TTCAA-CTTACT
65 AAGATTTGCT-ATCTTCAATC-TGCT
* * * * * *
14411915 CCACTGCAACTTTAAGGAGTTAAGGATTA-TAGCTTTAATCTGCTCTATTGCAA-TTCCAGAGAG
1 CCACTGCAACTTCAGGGAGATAA-GATTAGT-GCTTTAATCTGCTCCACTGCAACTT-CAGGGAG
*
14411978 ATAAGATTTGCTATCTTCAATTTGCT
63 ATAAGATTTGCTATCTTCAATCTGCT
* * * * *
14412004 CAACTGCAACTTCAGGGAGATAAGATTTGTAATTTGTAGCTTTAATTTGTTCTACTACAACTTCA
1 CCACTGCAACTTCAGGGAGATAAGA--T-T-A---GT-GCTTTAATCTGCTCCACTGCAACTTCA
* *
14412069 GGAAAATAAGATTTGCTATCTTCAATCTGCT
58 GGGAGATAAGATTTGCTATCTTCAATCTGCT
* * * * * *
14412100 CTACTGCAATTTCAAGGAGATAAGATTAGCGATTTTAATCTACTCCACTGCAACTTCAGGGAGAT
1 CCACTGCAACTTCAGGGAGATAAGATTAGTG-CTTTAATCTGCTCCACTGCAACTTCAGGGAGAT
* **
14412165 AAGATTAG-TGGCTTCAATCTGCT
65 AAGATTTGCTATCTTCAATCTGCT
14412188 CCACTGCAACTTCAGGGAGATAATGATT
1 CCACTGCAACTTCAGGGAGATAA-GATT
14412216 TCAATCCATC
Statistics
Matches: 311, Mismatches: 56, Indels: 44
0.76 0.14 0.11
Matches are distributed among these distances:
87 2 0.01
88 103 0.33
89 127 0.41
90 1 0.00
91 1 0.00
92 2 0.01
93 1 0.00
94 1 0.00
96 71 0.23
97 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (88 bp):
CCACTGCAACTTCAGGGAGATAAGATTAGTGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATA
AGATTTGCTATCTTCAATCTGCT
Found at i:14414872 original size:46 final size:45
Alignment explanation
Indices: 14414822--14414997 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
14414812 TGGTTGGGCA
14414822 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
14414868 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
14414915 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
14414961 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
14414998 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:14414977 original size:93 final size:93
Alignment explanation
Indices: 14414818--14414989 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
14414808 AGGATGGTTG
* *
14414818 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
14414883 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
14414911 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
14414976 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
14414990 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:14417971 original size:15 final size:15
Alignment explanation
Indices: 14417951--14418006 Score: 78
Period size: 15 Copynumber: 3.7 Consensus size: 15
14417941 ATATCTTGGG
14417951 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
14417966 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
14417981 TTTCTCTA-TCTTAGA
1 TTTCTTTATTC-TGGA
14417996 TTTCTTTATTC
1 TTTCTTTATTC
14418007 GGTTTCCTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
14 2 0.06
15 32 0.89
16 2 0.06
ACGTcount: A:0.14, C:0.16, G:0.09, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:14420457 original size:46 final size:46
Alignment explanation
Indices: 14420407--14420582 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
14420397 TGGTTGAGCA
14420407 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
14420453 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
14420498 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
14420546 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
14420583 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:14420563 original size:93 final size:93
Alignment explanation
Indices: 14420404--14420574 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
14420394 GGATGGTTGA
* *
14420404 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
14420469 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
14420497 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
14420562 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
14420575 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:14444508 original size:13 final size:13
Alignment explanation
Indices: 14444490--14444514 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14444480 AAAAGGAGAC
14444490 AGGGAACTACTCA
1 AGGGAACTACTCA
14444503 AGGGAACTACTC
1 AGGGAACTACTC
14444515 GGATTCACCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.24, G:0.24, T:0.16
Consensus pattern (13 bp):
AGGGAACTACTCA
Found at i:14466960 original size:14 final size:15
Alignment explanation
Indices: 14466926--14466966 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
14466916 TGTTGGGTCG
*
14466926 ATTTTTGAAATTCAT
1 ATTTTTAAAATTCAT
14466941 ATTTTTAAAATTCAT
1 ATTTTTAAAATTCAT
14466956 ATTTTTAAAAT
1 ATTTTTAAAAT
14466967 CAACAATCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTTTAAAATTCAT
Found at i:14467826 original size:49 final size:48
Alignment explanation
Indices: 14467754--14467873 Score: 125
Period size: 49 Copynumber: 2.5 Consensus size: 48
14467744 CTTCTTGATT
* ** * *
14467754 GTTATACAGTCACAAGTTGAAGTATAACTA-AGACTCCCAGATGACGGTG
1 GTTATGCAGTCACGGGTTCAAGTATAACTAGAG-CTCCCAGATGA-GGTA
* * * *
14467803 GTTATGCAGTCATGGGTTCAAGTATAACTCGAGCTCCCAGTTGATGTA
1 GTTATGCAGTCACGGGTTCAAGTATAACTAGAGCTCCCAGATGAGGTA
*
14467851 GTTATGCGGTCACGGGTTCAAGT
1 GTTATGCAGTCACGGGTTCAAGT
14467874 TTCATGCCAC
Statistics
Matches: 59, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
48 23 0.39
49 34 0.58
50 2 0.03
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (48 bp):
GTTATGCAGTCACGGGTTCAAGTATAACTAGAGCTCCCAGATGAGGTA
Found at i:14470314 original size:12 final size:12
Alignment explanation
Indices: 14470297--14470322 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14470287 AGCTTCCTTC
14470297 TTTTTTCTTTTT
1 TTTTTTCTTTTT
14470309 TTTTTTCTTTTT
1 TTTTTTCTTTTT
14470321 TT
1 TT
14470323 AAATTTAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (12 bp):
TTTTTTCTTTTT
Found at i:14473363 original size:16 final size:16
Alignment explanation
Indices: 14473325--14473367 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
14473315 TTTATAAGAC
*
14473325 ACATTTTTTAAAAAAAT
1 ACATTTTTT-ACAAAAT
14473342 AC-TTTTTTACAAAAT
1 ACATTTTTTACAAAAT
*
14473357 GCATTTTTTAC
1 ACATTTTTTAC
14473368 TTGAAAAGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 7 0.30
16 14 0.61
17 2 0.09
ACGTcount: A:0.40, C:0.12, G:0.02, T:0.47
Consensus pattern (16 bp):
ACATTTTTTACAAAAT
Found at i:14473581 original size:26 final size:27
Alignment explanation
Indices: 14473556--14473605 Score: 68
Period size: 25 Copynumber: 1.9 Consensus size: 27
14473546 AATATGTAAT
*
14473556 TATATGATG-AAAATATA-TTTTTTAA
1 TATATAATGCAAAATATAGTTTTTTAA
*
14473581 TATATAATGCTAAATATAGTTTTTT
1 TATATAATGCAAAATATAGTTTTTT
14473606 TTTTAAAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 8 0.38
26 7 0.33
27 6 0.29
ACGTcount: A:0.40, C:0.02, G:0.08, T:0.50
Consensus pattern (27 bp):
TATATAATGCAAAATATAGTTTTTTAA
Found at i:14473637 original size:16 final size:17
Alignment explanation
Indices: 14473604--14473653 Score: 55
Period size: 17 Copynumber: 2.7 Consensus size: 17
14473594 ATATAGTTTT
*
14473604 TTTTTTAAAACATCAATTA
1 TTTTTTAAAA-ATTAA-TA
14473623 TTTATTTTAAAAATTAATA
1 -TT-TTTTAAAAATTAATA
14473642 TTTTTTAAAAAT
1 TTTTTTAAAAAT
14473654 AAAATATATT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 10 0.36
18 2 0.07
19 2 0.07
20 6 0.21
21 8 0.29
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (17 bp):
TTTTTTAAAAATTAATA
Found at i:14474383 original size:19 final size:19
Alignment explanation
Indices: 14474359--14474404 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
14474349 GATTATATTG
14474359 TTTAAACATTATA-AAAAAA
1 TTTAAA-ATTATATAAAAAA
14474378 TTT-AAATTATATAAAAAA
1 TTTAAAATTATATAAAAAA
*
14474396 TGTAAAATT
1 TTTAAAATT
14474405 TATGGAAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 6 0.25
18 10 0.42
19 8 0.33
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (19 bp):
TTTAAAATTATATAAAAAA
Found at i:14474504 original size:26 final size:26
Alignment explanation
Indices: 14474468--14474517 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
14474458 TTTCTCCAAA
14474468 AACCGATTCTAGCATGTTGAAGAAAG
1 AACCGATTCTAGCATGTTGAAGAAAG
14474494 AACCGATTCTAGCATGTTGAAGAA
1 AACCGATTCTAGCATGTTGAAGAA
14474518 GTTATAGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.24
Consensus pattern (26 bp):
AACCGATTCTAGCATGTTGAAGAAAG
Found at i:14477049 original size:28 final size:27
Alignment explanation
Indices: 14476995--14477073 Score: 70
Period size: 27 Copynumber: 2.9 Consensus size: 27
14476985 TTAAATTTCA
* * *
14476995 AATCATTTATTAATTTCAATAGCAATT
1 AATCAATTAGTAATTTCAATAACAATT
*
14477022 AATCAATTAGTAATGTTCATTAACAATT
1 AATCAATTAGTAAT-TTCAATAACAATT
* * *
14477050 AGAACAATTATTTA-TTCAATAACA
1 A-ATCAATTAGTAATTTCAATAACA
14477074 GTCAGTTATT
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
27 21 0.50
28 12 0.29
29 9 0.21
ACGTcount: A:0.44, C:0.11, G:0.05, T:0.39
Consensus pattern (27 bp):
AATCAATTAGTAATTTCAATAACAATT
Found at i:14477082 original size:18 final size:18
Alignment explanation
Indices: 14477061--14477121 Score: 59
Period size: 18 Copynumber: 3.4 Consensus size: 18
14477051 GAACAATTAT
*
14477061 TTATTCAATAACAGTCAG
1 TTATTCAATAACAATCAG
** *
14477079 TTATTCGGTAACAATCAA
1 TTATTCAATAACAATCAG
* * *
14477097 TTATTCGATAATAACCAG
1 TTATTCAATAACAATCAG
14477115 TTATTCA
1 TTATTCA
14477122 GTATCGATCA
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.36
Consensus pattern (18 bp):
TTATTCAATAACAATCAG
Found at i:14477182 original size:17 final size:19
Alignment explanation
Indices: 14477160--14477207 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
14477150 AATAGTAAAT
*
14477160 TATTCAATAA-AA-TCAGG
1 TATTCAATAACAATTAAGG
* *
14477177 TATTCAGTAACAATTAAGT
1 TATTCAATAACAATTAAGG
14477196 TATTCAATAACA
1 TATTCAATAACA
14477208 GTCATTCATT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
17 9 0.36
18 2 0.08
19 14 0.56
ACGTcount: A:0.46, C:0.12, G:0.08, T:0.33
Consensus pattern (19 bp):
TATTCAATAACAATTAAGG
Found at i:14477252 original size:18 final size:17
Alignment explanation
Indices: 14477226--14477277 Score: 77
Period size: 18 Copynumber: 2.9 Consensus size: 17
14477216 TTTAGTGACA
14477226 ATCAGTTATTCAGTAAT
1 ATCAGTTATTCAGTAAT
*
14477243 GATCAATTATTCAGTAAT
1 -ATCAGTTATTCAGTAAT
14477261 ATTCAGTTATTCAGTAA
1 A-TCAGTTATTCAGTAA
14477278 CAGTCTAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
17 1 0.03
18 30 0.97
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.40
Consensus pattern (17 bp):
ATCAGTTATTCAGTAAT
Found at i:14477293 original size:18 final size:19
Alignment explanation
Indices: 14477267--14477331 Score: 82
Period size: 18 Copynumber: 3.6 Consensus size: 19
14477257 TAATATTCAG
*
14477267 TTATTCAGTAACAGTCTAA
1 TTATCCAGTAACAGTCTAA
14477286 -TATCCAGTAACAGTC-AA
1 TTATCCAGTAACAGTCTAA
*
14477303 TTATCCAATAACAGT-TAA
1 TTATCCAGTAACAGTCTAA
*
14477321 TTATTCAGTAA
1 TTATCCAGTAA
14477332 TAATCAGTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
17 2 0.05
18 38 0.95
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.34
Consensus pattern (19 bp):
TTATCCAGTAACAGTCTAA
Found at i:14477294 original size:36 final size:37
Alignment explanation
Indices: 14477177--14477343 Score: 139
Period size: 36 Copynumber: 4.6 Consensus size: 37
14477167 TAAAATCAGG
* * *
14477177 TATTCAGTAACAATTAAGTTATTCAATAACAGTC--AT
1 TATTCAGTAATAA-TCAGTTATTCAGTAACAGTCTAAT
* * * *
14477213 TCATTTAGTGACAATCAGTTATTCAGTAA-TGATC-AAT
1 T-ATTCAGTAATAATCAGTTATTCAGTAACAG-TCTAAT
*
14477250 TATTCAGTAATATTCAGTTATTCAGTAACAGTCTAA-
1 TATTCAGTAATAATCAGTTATTCAGTAACAGTCTAAT
* * * * * *
14477286 TATCCAGTAACAGTCAATTATCCAATAACAGT-TAAT
1 TATTCAGTAATAATCAGTTATTCAGTAACAGTCTAAT
14477322 TATTCAGTAATAATCAGTTATT
1 TATTCAGTAATAATCAGTTATT
14477344 TTATACCTTT
Statistics
Matches: 104, Mismatches: 21, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
35 4 0.04
36 84 0.81
37 16 0.15
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.37
Consensus pattern (37 bp):
TATTCAGTAATAATCAGTTATTCAGTAACAGTCTAAT
Found at i:14479201 original size:21 final size:22
Alignment explanation
Indices: 14479177--14479226 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
14479167 TTTCATTCTG
14479177 TTTCTTTTCTATCTCTTTT-TT
1 TTTCTTTTCTATCTCTTTTGTT
* * *
14479198 TTTCATTTCTTTTTCTTTTGTT
1 TTTCTTTTCTATCTCTTTTGTT
*
14479220 TTACTTT
1 TTTCTTT
14479227 ATATATATAT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.06, C:0.16, G:0.02, T:0.76
Consensus pattern (22 bp):
TTTCTTTTCTATCTCTTTTGTT
Found at i:14479374 original size:31 final size:32
Alignment explanation
Indices: 14479318--14479380 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 32
14479308 CACACTTGTC
*
14479318 ATAATTTAATATATTTATTACATAAAAATCTT
1 ATAATATAATATATTTATTACATAAAAATCTT
*
14479350 ATAATATAA-ATATTTAATTA-ATAAATATCTT
1 ATAATATAATATATTT-ATTACATAAAAATCTT
14479381 TTATAAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 16 0.57
32 12 0.43
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (32 bp):
ATAATATAATATATTTATTACATAAAAATCTT
Found at i:14491618 original size:46 final size:46
Alignment explanation
Indices: 14491556--14492328 Score: 1077
Period size: 46 Copynumber: 16.8 Consensus size: 46
14491546 TTTGACATGA
* * * * *
14491556 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCACGT
* **
14491602 TGTCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* *
14491648 TGCCATGGTATCTTTCAACCATGGTCTTATTC-TTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* * *
14491693 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATAATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* * *
14491739 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATTAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* * *
14491785 TGCCATGGTATCTTTCAACTATGGTCTTATTC-TTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* * *
14491830 TGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
**
14491876 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
**
14491922 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
**
14491968 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
** * *
14492014 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCCATGTTACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTT-CATATCACGT
* *
14492061 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* * *
14492107 TTCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* * *
14492153 TACCATGGTATCTTTCAACCATGGTCTTATTC-TTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* * *
14492198 TGCCATGGTATCTTTCAACCATTGTCTTACACATTTCATATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* *
14492244 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* *
14492290 TGCCATGATATCTTTCAACCATGGTCTTACACATTTCAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
14492329 TTCAGAGAGC
Statistics
Matches: 664, Mismatches: 58, Indels: 10
0.91 0.08 0.01
Matches are distributed among these distances:
45 123 0.19
46 500 0.75
47 41 0.06
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
Found at i:14491779 original size:137 final size:138
Alignment explanation
Indices: 14491556--14492328 Score: 1149
Period size: 137 Copynumber: 5.6 Consensus size: 138
14491546 TTTGACATGA
* * * * * *
14491556 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGTCATGGTATCTTTCAA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCATGTTGCCATGGTATCTTTCAA
*
14491620 CCATGGTCTTGTTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTC-TTTC
65 CCATGGTCTTATTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTC
*
14491684 ATGTCACGT
130 ATATCACGT
*
14491693 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATAATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAAC
** * * *
14491758 CATGGTCTTACACATTTCATATTAGGTTGCCATGGTATCTTTCAACTATGGTCTTATTC-TTTCA
66 CATGGTCTTATTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCA
*
14491822 TGTCACGT
131 TATCACGT
*
14491830 TGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAAC
* *
14491895 CATGGTCTTGTTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCA
66 CATGGTCTTATTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCA
14491960 TATCACGT
131 TATCACGT
*** *
14491968 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAAC
* * * **
14492033 CATGGTCTTGTTCATTTCCATGTTACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTC
66 CATGGTCTTATTCATTT-CATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTC
*
14492098 ATATCATGT
130 ATATCACGT
* * *
14492107 TTCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTACCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAAC
* * **
14492172 CATGGTCTTATTC-TTTCATGTCACGTTGCCATGGTATCTTTCAACCATTGTCTTACACATTTCA
66 CATGGTCTTATTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCA
*
14492236 TATCATGT
131 TATCACGT
*
14492244 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGATATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAAC
**
14492309 CATGGTCTTACACATTTCAT
66 CATGGTCTTATTCATTTCAT
14492329 TTCAGAGAGC
Statistics
Matches: 583, Mismatches: 49, Indels: 7
0.91 0.08 0.01
Matches are distributed among these distances:
136 4 0.01
137 360 0.62
138 98 0.17
139 121 0.21
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.41
Consensus pattern (138 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAAC
CATGGTCTTATTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCA
TATCACGT
Found at i:14492280 original size:21 final size:21
Alignment explanation
Indices: 14492256--14492327 Score: 56
Period size: 21 Copynumber: 3.2 Consensus size: 21
14492246 CCATGGTATC
14492256 TTTCAACCATGGTCTTACACA
1 TTTCAACCATGGTCTTACACA
* * * *
14492277 TTTCATATCATGTTGCCATGATATC-
1 TTTCA-ACCATG--GTC-TTACA-CA
14492302 TTTCAACCATGGTCTTACACA
1 TTTCAACCATGGTCTTACACA
14492323 TTTCA
1 TTTCA
14492328 TTTCAGAGAG
Statistics
Matches: 37, Mismatches: 8, Indels: 12
0.65 0.14 0.21
Matches are distributed among these distances:
20 1 0.03
21 13 0.35
22 7 0.19
24 7 0.19
25 8 0.22
26 1 0.03
ACGTcount: A:0.26, C:0.25, G:0.10, T:0.39
Consensus pattern (21 bp):
TTTCAACCATGGTCTTACACA
Found at i:14492305 original size:25 final size:25
Alignment explanation
Indices: 14492231--14492306 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 25
14492221 GTCTTACACA
*
14492231 TTTCATATCATGTTGCCATGGTATC
1 TTTCATATCATGTTGCCATGATATC
* * * *
14492256 TTTCA-ACCATG--GTC-TTACA-C
1 TTTCATATCATGTTGCCATGATATC
14492276 ATTTCATATCATGTTGCCATGATATC
1 -TTTCATATCATGTTGCCATGATATC
14492302 TTTCA
1 TTTCA
14492307 ACCATGGTCT
Statistics
Matches: 36, Mismatches: 9, Indels: 12
0.63 0.16 0.21
Matches are distributed among these distances:
20 1 0.03
21 7 0.19
22 7 0.19
24 7 0.19
25 13 0.36
26 1 0.03
ACGTcount: A:0.24, C:0.22, G:0.12, T:0.42
Consensus pattern (25 bp):
TTTCATATCATGTTGCCATGATATC
Found at i:14492327 original size:368 final size:366
Alignment explanation
Indices: 14491566--14492328 Score: 1303
Period size: 368 Copynumber: 2.1 Consensus size: 366
14491556 TGCCATAGTG
* * * *
14491566 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGTCATGGTATCTTTCAACCATGGTCTT
1 TCTTTCAACCATGGTCTTACTCA-TTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTT
14491630 GTTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTCATGTCACGTTG
65 GTTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTCATGTCACGTTG
14491695 CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATAATGTTGCCATGGTATCTTTCAACCA
130 CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATAATGTTGCCATGGTATCTTTCAACCA
* * *
14491760 TGGTCTTACACATTTCATATTAGGTTGCCATGGTATCTTTCAACTATGGTCTTATTCTTTCATGT
195 TGGTCTTACACATTTCATATCAGGTTACCATGGTATCTTTCAACCATGGTCTTATTCTTTCATGT
14491825 CACGTTGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTT
260 CACGTTGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTT
*** *
14491890 TCAACCATGGTCTTGTTCATTTCATATCACGTTGCCATGGTA
325 TCAACCATGGTCTTACACATTTCATATCACGTTGCCATGATA
**
14491932 TCTTTCAACCATGGTCTTGTTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTG
1 TCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTG
* *
14491997 TTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCCATGTTACGTT
66 TTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTC-TTT-CATGTCACGTT
* *
14492062 GCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTTCCATGGTATCTTTCAACC
129 GCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATAATGTTGCCATGGTATCTTTCAACC
14492127 ATGGTCTTACACATTTCATATCAGGTTACCATGGTATCTTTCAACCATGGTCTTATTCTTTCATG
194 ATGGTCTTACACATTTCATATCAGGTTACCATGGTATCTTTCAACCATGGTCTTATTCTTTCATG
* *
14492192 TCACGTTGCCATGGTATCTTTCAACCATTGTCTTACACATTTCATATCATGTTGCCATGGTATCT
259 TCACGTTGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCT
*
14492257 TTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGATA
324 TTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGATA
*
14492300 TCTTTCAACCATGGTCTTACACATTTCAT
1 TCTTTCAACCATGGTCTTACTCATTTCAT
14492329 TTCAGAGAGC
Statistics
Matches: 371, Mismatches: 23, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
365 4 0.01
366 102 0.27
367 3 0.01
368 262 0.71
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.41
Consensus pattern (366 bp):
TCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTG
TTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTCATGTCACGTTGC
CATGGTATCTTTCAACCATGGTCTTACACATTTCATATAATGTTGCCATGGTATCTTTCAACCAT
GGTCTTACACATTTCATATCAGGTTACCATGGTATCTTTCAACCATGGTCTTATTCTTTCATGTC
ACGTTGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTT
CAACCATGGTCTTACACATTTCATATCACGTTGCCATGATA
Found at i:14494419 original size:11 final size:11
Alignment explanation
Indices: 14494405--14494446 Score: 75
Period size: 11 Copynumber: 3.8 Consensus size: 11
14494395 AATTAATAAA
14494405 AAATAATAATG
1 AAATAATAATG
14494416 AAATAATAATG
1 AAATAATAATG
*
14494427 AAATAATAATA
1 AAATAATAATG
14494438 AAATAATAA
1 AAATAATAA
14494447 AATATCTTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (11 bp):
AAATAATAATG
Found at i:14494445 original size:14 final size:14
Alignment explanation
Indices: 14494392--14494450 Score: 59
Period size: 14 Copynumber: 4.1 Consensus size: 14
14494382 TTTTATACTA
14494392 AATAATTAATAAAA-
1 AATAA-TAATAAAAT
*
14494406 AATAATAATGAAAT
1 AATAATAATAAAAT
14494420 AATAATGAAATAATAAT
1 AATAAT--AATAA-AAT
14494437 AA-AATAATAAAAT
1 AATAATAATAAAAT
14494450 A
1 A
14494451 TCTTATTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
13 11 0.28
14 16 0.41
16 7 0.18
17 5 0.13
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.27
Consensus pattern (14 bp):
AATAATAATAAAAT
Found at i:14494473 original size:20 final size:21
Alignment explanation
Indices: 14494420--14494495 Score: 68
Period size: 20 Copynumber: 3.7 Consensus size: 21
14494410 ATAATGAAAT
* *
14494420 AATAATGAAATA-ATAA-TAA
1 AATAATAAAATATCTAATTAA
*
14494439 AATAATAAAATATCTTATTAA
1 AATAATAAAATATCTAATTAA
*
14494460 AATAAT-ATATATCTAATTAAA
1 AATAATAAAATATCTAATT-AA
*
14494481 TAATCATAAAATATC
1 -AATAATAAAATATC
14494496 ATCAACATCA
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
19 11 0.24
20 12 0.27
21 11 0.24
22 5 0.11
23 6 0.13
ACGTcount: A:0.59, C:0.05, G:0.01, T:0.34
Consensus pattern (21 bp):
AATAATAAAATATCTAATTAA
Found at i:14496121 original size:25 final size:25
Alignment explanation
Indices: 14496083--14496130 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
14496073 GAATATGCTG
*
14496083 AATGTGCTAATAATTAGAGAGCACT
1 AATGTGCTAATAATCAGAGAGCACT
*
14496108 AATGTGCTAGTAATCAGAGAGCA
1 AATGTGCTAATAATCAGAGAGCA
14496131 TGCTGAGGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.40, C:0.12, G:0.23, T:0.25
Consensus pattern (25 bp):
AATGTGCTAATAATCAGAGAGCACT
Found at i:14497445 original size:46 final size:46
Alignment explanation
Indices: 14497383--14498201 Score: 1146
Period size: 46 Copynumber: 17.8 Consensus size: 46
14497373 TTTGACATGA
* * * * *
14497383 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCACGT
* **
14497429 TGTCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
**
14497475 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
**
14497521 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
**
14497567 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
**
14497613 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
**
14497659 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* * *
14497705 TGCCATGGTATCTTTCAACCATGGTCTTGCACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* * *
14497751 TGCCATGGTATGTTTCAACCATGGTCTTATTC-TTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* * *
14497796 TGCCATGGTATCTTTCAACCACGGTCTTACACATTTC-TAATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT-ATCACGT
* *
14497842 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TAATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT-ATCACGT
**
14497888 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* * *
14497934 TGCCATGGTATCTTTCAACCATTGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
** * *
14497980 TGCCATGGTATCTTTCAACCATGGTCTTA-TTTTTTCATGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* *
14498025 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* * *
14498071 TGCCATGGCATCTTTCAACCATGGTCTTACACATTTC-TAATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT-ATCACGT
* *
14498117 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
*
14498163 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
14498202 TTCAGAGAGC
Statistics
Matches: 719, Mismatches: 47, Indels: 14
0.92 0.06 0.02
Matches are distributed among these distances:
45 85 0.12
46 632 0.88
47 2 0.00
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
Found at i:14497941 original size:229 final size:229
Alignment explanation
Indices: 14497378--14498206 Score: 1304
Period size: 229 Copynumber: 3.6 Consensus size: 229
14497368 TTATCTTTGA
* * * * * * *
14497378 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCT-GTCATGTTGTCATGGTATCT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTAATCATGTTGCCATGGTATCT
***
14497442 TTCAACCATGGTCTTGTTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTGTTC
65 TTCAACCATGGTCTTGTTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
* * *
14497507 ATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGTTGCCA
130 ATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTATTC-TTTCATGTCACGTTGCCA
***
14497572 TGGTATCTTTCAACCATGGTCTTGTTCATTTCATAT
194 TGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *** *
14497608 CACGTTGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTC-ATATCACGTTGCCATGGTATCT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTA-ATCATGTTGCCATGGTATCT
*
14497672 TTCAACCATGGTCTTGTTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTGCAC
65 TTCAACCATGGTCTTGTTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
*
14497737 ATTTCATATCAGGTTGCCATGGTATGTTTCAACCATGGTCTTATTCTTTCATGTCACGTTGCCAT
130 ATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTCATGTCACGTTGCCAT
*
14497802 GGTATCTTTCAACCACGGTCTTACACATTTC-TAAT
195 GGTATCTTTCAACCATGGTCTTACACATTTCAT-AT
14497837 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTAATCATGTTGCCATGGTATCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTAATCATGTTGCCATGGTATCTT
*
14497902 TCAACCATGGTCTTGTTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATTGTCTTACACA
66 TCAACCATGGTCTTGTTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
* *
14497967 TTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTATTTTTTCATGTCATGTTGCCATG
131 TTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTCATGTCACGTTGCCATG
14498032 GTATCTTTCAACCATGGTCTTACACATTTCATAT
196 GTATCTTTCAACCATGGTCTTACACATTTCATAT
*
14498066 CATGTTGCCATGGCATCTTTCAACCATGGTCTTACACATTTCTAATCATGTTGCCATGGTATCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTAATCATGTTGCCATGGTATCTT
*** *
14498131 TCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
66 TCAACCATGGTCTTGTTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
*
14498196 TTTCATTTCAG
131 TTTCATATCAG
14498207 AGAGCACACT
Statistics
Matches: 556, Mismatches: 38, Indels: 11
0.92 0.06 0.02
Matches are distributed among these distances:
228 1 0.00
229 399 0.72
230 156 0.28
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (229 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTAATCATGTTGCCATGGTATCTT
TCAACCATGGTCTTGTTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
TTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTCATGTCACGTTGCCATG
GTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:14498061 original size:21 final size:21
Alignment explanation
Indices: 14498037--14498107 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 21
14498027 CCATGGTATC
14498037 TTTCAACCATGGTCTTACACA
1 TTTCAACCATGGTCTTACACA
* * **
14498058 TTTCATATCATGTTGCCATGGCATC-
1 TTTCA-ACCATG--GTC-TTACA-CA
14498083 TTTCAACCATGGTCTTACACA
1 TTTCAACCATGGTCTTACACA
14498104 TTTC
1 TTTC
14498108 TAATCATGTT
Statistics
Matches: 36, Mismatches: 8, Indels: 12
0.64 0.14 0.21
Matches are distributed among these distances:
20 1 0.03
21 12 0.33
22 7 0.19
24 7 0.19
25 8 0.22
26 1 0.03
ACGTcount: A:0.24, C:0.27, G:0.11, T:0.38
Consensus pattern (21 bp):
TTTCAACCATGGTCTTACACA
Found at i:14507245 original size:14 final size:15
Alignment explanation
Indices: 14507226--14507255 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
14507216 AATTAAAACT
14507226 ATATAAAAA-AATAA
1 ATATAAAAATAATAA
14507240 ATATAAAAATAATAA
1 ATATAAAAATAATAA
14507255 A
1 A
14507256 AATATTGGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (15 bp):
ATATAAAAATAATAA
Found at i:14507294 original size:130 final size:128
Alignment explanation
Indices: 14507118--14507487 Score: 540
Period size: 130 Copynumber: 2.9 Consensus size: 128
14507108 ACATTTATTT
* * ** *
14507118 TAATAAAAATTATTGGCTAATTTTAAAAAATATTTAATGCATTAAAATTAAAAAAAGTAAAGTAC
1 TAATAAAAA-TATTGGCTAA-TTTAAAAAACATTTATTTTAATAAAATTAAAAAAAGTAAAGTAC
*
14507183 AATTAAAATATTAAAAATAACTTTTATTTTATTAATTAAAACTATATAAAAAAATAAATATAAAA
64 AATTAAAATATTAAAAACAACTTTTATTTTATTAATTAAAACTATATAAAAAAA-AAATATAAAA
14507248 A
128 A
*
14507249 TAATAAAAATATTGGCTAATTTAAAATAACATTTATTTTAATAAAATTAGAAAAAGTAAAGTACA
1 TAATAAAAATATTGGCTAATTTAAAA-AACATTTATTTTAATAAAATTAAAAAAAGTAAAGTACA
*
14507314 ATTAAAATATTAAAAACAAATTTTATTTTATTAATTAAAACTATAT-----AAAAATATAAAAA
65 ATTAAAATATTAAAAACAACTTTTATTTTATTAATTAAAACTATATAAAAAAAAAATATAAAAA
14507373 TAATAAAAATATTGGCTAATTTAAAAGAACATTTATTTTAATAAAATT-AAAAAA-TAAAGTACA
1 TAATAAAAATATTGGCTAATTTAAAA-AACATTTATTTTAATAAAATTAAAAAAAGTAAAGTACA
* *
14507436 CTTAAAATATTAAAAACAACTTTTATTTTATT-ATATGAAACTATATAAAAAA
65 ATTAAAATATTAAAAACAACTTTTATTTTATTAAT-TAAAACTATATAAAAAA
14507488 TGTTTTTACA
Statistics
Matches: 219, Mismatches: 13, Indels: 18
0.88 0.05 0.07
Matches are distributed among these distances:
121 2 0.01
122 49 0.22
123 5 0.02
124 58 0.26
125 2 0.01
127 1 0.00
129 7 0.03
130 86 0.39
131 9 0.04
ACGTcount: A:0.56, C:0.05, G:0.04, T:0.35
Consensus pattern (128 bp):
TAATAAAAATATTGGCTAATTTAAAAAACATTTATTTTAATAAAATTAAAAAAAGTAAAGTACAA
TTAAAATATTAAAAACAACTTTTATTTTATTAATTAAAACTATATAAAAAAAAAATATAAAAA
Found at i:14512019 original size:25 final size:24
Alignment explanation
Indices: 14511982--14512033 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
14511972 CTATTATAAA
* *
14511982 AAAATTATAAAAT-AAAAATTAATT
1 AAAATTACAAAATGAAAAA-AAATT
14512006 AAAATTACATAAATGAAAAAAAATT
1 AAAATTACA-AAATGAAAAAAAATT
14512031 AAA
1 AAA
14512034 TACTATTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 8 0.33
25 11 0.46
26 5 0.21
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (24 bp):
AAAATTACAAAATGAAAAAAAATT
Found at i:14512241 original size:21 final size:22
Alignment explanation
Indices: 14512196--14512242 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 22
14512186 ACAGAGCTTT
*
14512196 TTTG-CAAAAATTAGAGACAGC
1 TTTGACAAAAATTAGAGACAGA
14512217 TTTGACAAAAATTGAGAGA-A-A
1 TTTGACAAAAATT-AGAGACAGA
14512238 TTTGA
1 TTTGA
14512243 GAGAATTTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
21 9 0.39
22 9 0.39
23 5 0.22
ACGTcount: A:0.45, C:0.09, G:0.19, T:0.28
Consensus pattern (22 bp):
TTTGACAAAAATTAGAGACAGA
Found at i:14513315 original size:29 final size:28
Alignment explanation
Indices: 14513282--14513344 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 28
14513272 AATATAAGAG
* *
14513282 TTTAATCGCTCAAATAAAAGTTAAAACAT
1 TTTAATAG-TCAAATAAAAATTAAAACAT
*
14513311 TTTAAAATAGTCAAATAAAAATTAAAACTT
1 TTT--AATAGTCAAATAAAAATTAAAACAT
14513341 TTTA
1 TTTA
14513345 CAAATATTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
28 1 0.03
29 3 0.10
30 21 0.72
31 4 0.14
ACGTcount: A:0.51, C:0.10, G:0.05, T:0.35
Consensus pattern (28 bp):
TTTAATAGTCAAATAAAAATTAAAACAT
Found at i:14513325 original size:30 final size:31
Alignment explanation
Indices: 14513291--14513364 Score: 96
Period size: 30 Copynumber: 2.4 Consensus size: 31
14513281 GTTTAATCGC
14513291 TCAAATAAAAGTTAAAACATTTTA-AAATAG
1 TCAAATAAAAGTTAAAACATTTTACAAATAG
* * *
14513321 TCAAATAAAAATTAAAACTTTTTACAAATAT
1 TCAAATAAAAGTTAAAACATTTTACAAATAG
* *
14513352 TTAAATAAGAGTT
1 TCAAATAAAAGTT
14513365 TCTCAAATTA
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
30 22 0.59
31 15 0.41
ACGTcount: A:0.54, C:0.07, G:0.05, T:0.34
Consensus pattern (31 bp):
TCAAATAAAAGTTAAAACATTTTACAAATAG
Found at i:14513894 original size:41 final size:41
Alignment explanation
Indices: 14513846--14513928 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
14513836 TGAATGTAAC
14513846 ACTTCCGTATTTTGGTTGAAATAATAAAATTAAAATTTTAG
1 ACTTCCGTATTTTGGTTGAAATAATAAAATTAAAATTTTAG
*
14513887 ACTTCCGTATTTTGGTTGAAATGATAAAATTAAAATTTTAG
1 ACTTCCGTATTTTGGTTGAAATAATAAAATTAAAATTTTAG
14513928 A
1 A
14513929 ATACTTTTCC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.39, C:0.07, G:0.13, T:0.41
Consensus pattern (41 bp):
ACTTCCGTATTTTGGTTGAAATAATAAAATTAAAATTTTAG
Found at i:14515379 original size:16 final size:16
Alignment explanation
Indices: 14515358--14515391 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
14515348 ATATTTATGA
14515358 TACCTTTTACATGAAT
1 TACCTTTTACATGAAT
14515374 TACCTTTTACATGAAT
1 TACCTTTTACATGAAT
14515390 TA
1 TA
14515392 TGGTAATCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.32, C:0.18, G:0.06, T:0.44
Consensus pattern (16 bp):
TACCTTTTACATGAAT
Found at i:14516242 original size:21 final size:21
Alignment explanation
Indices: 14516213--14516255 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
14516203 TTGTTACATA
* *
14516213 TGAATTTTAAAATTTTTTTTT
1 TGAAATTTAAAATATTTTTTT
14516234 TGAAATTTAAAATATTTTTTT
1 TGAAATTTAAAATATTTTTTT
14516255 T
1 T
14516256 ATTTTTTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.63
Consensus pattern (21 bp):
TGAAATTTAAAATATTTTTTT
Found at i:14516921 original size:17 final size:18
Alignment explanation
Indices: 14516891--14516938 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
14516881 AGAAAATAAG
*
14516891 TAAAAATATCATTTAAAA
1 TAAAAATATAATTTAAAA
*
14516909 TAAAAA-ATAATTTAAAC
1 TAAAAATATAATTTAAAA
**
14516926 TAATTATATAATT
1 TAAAAATATAATT
14516939 AATTAAAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
17 13 0.52
18 12 0.48
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (18 bp):
TAAAAATATAATTTAAAA
Found at i:14516951 original size:12 final size:12
Alignment explanation
Indices: 14516936--14516965 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
14516926 TAATTATATA
14516936 ATTAATTAAAAT
1 ATTAATTAAAAT
14516948 ATTAATTAAAAT
1 ATTAATTAAAAT
14516960 ATTAAT
1 ATTAAT
14516966 ATTTTATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (12 bp):
ATTAATTAAAAT
Found at i:14518414 original size:9 final size:9
Alignment explanation
Indices: 14518400--14518439 Score: 62
Period size: 9 Copynumber: 4.4 Consensus size: 9
14518390 TGGGTATTTA
14518400 TATGGTTCC
1 TATGGTTCC
14518409 TATGGTTCC
1 TATGGTTCC
**
14518418 TATGGTTGG
1 TATGGTTCC
14518427 TATGGTTCC
1 TATGGTTCC
14518436 TATG
1 TATG
14518440 CGAGAAGACA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.12, C:0.15, G:0.28, T:0.45
Consensus pattern (9 bp):
TATGGTTCC
Found at i:14523786 original size:26 final size:25
Alignment explanation
Indices: 14523754--14523910 Score: 71
Period size: 25 Copynumber: 6.3 Consensus size: 25
14523744 ACTTGTCATA
14523754 AAGGCTTTCCAGATAACT-TCACCACT
1 AAGGCTTTCCAGATAACTGTCA-CA-T
* *
14523780 AAGGCTTCCCAAATAA-TGTCACAT
1 AAGGCTTTCCAGATAACTGTCACAT
*
14523804 -AGGCTTTTCAGATAAC--TCATCAT
1 AAGGCTTTCCAGATAACTGTCA-CAT
*** * * *
14523827 AATTTTTTTCCAAATAATATGCCACAT
1 AA-GGCTTTCCAGATAA-CTGTCACAT
*
14523854 AAGCCTTT-CAGATAACT-TGC-CAT
1 AAGGCTTTCCAGATAACTGT-CACAT
* *
14523877 AAAGGCTTTCTAGATAATTTGTCACAT
1 -AAGGCTTTCCAGATAA-CTGTCACAT
14523904 -AGGCTTT
1 AAGGCTTT
14523911 GTTTGGTTTT
Statistics
Matches: 96, Mismatches: 21, Indels: 29
0.66 0.14 0.20
Matches are distributed among these distances:
22 3 0.03
23 18 0.19
24 11 0.11
25 31 0.32
26 22 0.23
27 9 0.09
28 2 0.02
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.33
Consensus pattern (25 bp):
AAGGCTTTCCAGATAACTGTCACAT
Found at i:14527773 original size:43 final size:43
Alignment explanation
Indices: 14527655--14527779 Score: 128
Period size: 43 Copynumber: 3.0 Consensus size: 43
14527645 AAACACATAT
* * *
14527655 ATCACATA-CAATGCC-ATATCCCAGATATGGTCTTACATGTT
1 ATCACATATCAATGCCAATACCCCAGATATGGTCTTACACGTA
* ** * * *
14527696 ATCACATATCGATGCCTCTATCCCAAATAGGGTCTTACACGTA
1 ATCACATATCAATGCCAATACCCCAGATATGGTCTTACACGTA
* * *
14527739 ATCTCATATTAATGCCAATGCCCCAGATATGGTCTTACACG
1 ATCACATATCAATGCCAATACCCCAGATATGGTCTTACACG
14527780 AAACCACACC
Statistics
Matches: 67, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
41 8 0.12
42 6 0.09
43 53 0.79
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (43 bp):
ATCACATATCAATGCCAATACCCCAGATATGGTCTTACACGTA
Found at i:14533280 original size:34 final size:34
Alignment explanation
Indices: 14533222--14533317 Score: 90
Period size: 34 Copynumber: 2.8 Consensus size: 34
14533212 GTTCCAGTTA
* * *
14533222 GGGCCTTAGCCCTTGTTCATTAACAGTATCAGTCT
1 GGGCCTTAACCCAT-TTCAGTAACAGTATCAGTCT
* *
14533257 GGG-CTTGAGCCCATTTCAGTAACAG-AGGCAGTCT
1 GGGCCTT-AACCCATTTCAGTAACAGTA-TCAGTCT
*
14533291 GGGCCTTAACCCATTTTAGT-ACAGTAT
1 GGGCCTTAACCCATTTCAGTAACAGTAT
14533318 GCAAACAAAG
Statistics
Matches: 51, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
33 5 0.10
34 34 0.67
35 12 0.24
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.30
Consensus pattern (34 bp):
GGGCCTTAACCCATTTCAGTAACAGTATCAGTCT
Done.