Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 47 of 276
Found at i:14546951 original size:44 final size:42
Alignment explanation
Indices: 14546900--14547016 Score: 153
Period size: 44 Copynumber: 2.7 Consensus size: 42
14546890 ATATGTGTTA
* *
14546900 TCGTGTAAGACCATGTCTGGGACGTTGGCATCGATTTGTGATT
1 TCGTGTAAGACCATGTCTGGGACGTTGGCATCG-TATATGATT
*
14546943 TACGTGTAAGACCATGTCTGGGACATTGGCATCGTATATGATT
1 T-CGTGTAAGACCATGTCTGGGACGTTGGCATCGTATATGATT
* * * *
14546986 TTGGGTAAGACCACGTCTAGGACGTTGGCAT
1 TCGTGTAAGACCATGTCTGGGACGTTGGCAT
14547017 TGTACAAGCT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
42 25 0.38
43 9 0.14
44 31 0.48
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACGTTGGCATCGTATATGATT
Found at i:14554826 original size:30 final size:30
Alignment explanation
Indices: 14554792--14554850 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
14554782 TAGGACACAG
**
14554792 GCGTGTCCGGTAGCCATGTGAGGCACACGA
1 GCGTGTCCAATAGCCATGTGAGGCACACGA
*
14554822 GCGTGTCCAATAGCCGTGTGAGGCACACG
1 GCGTGTCCAATAGCCATGTGAGGCACACG
14554851 GCCTGCTTAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.20, C:0.27, G:0.36, T:0.17
Consensus pattern (30 bp):
GCGTGTCCAATAGCCATGTGAGGCACACGA
Found at i:14561699 original size:53 final size:51
Alignment explanation
Indices: 14561623--14561761 Score: 161
Period size: 52 Copynumber: 2.7 Consensus size: 51
14561613 CACATATAAT
* * *
14561623 ACCGATGCTATATCCCAGATATGGTCTTATACGGAATCACATTACCACATCAC
1 ACCGATGCTATAGCCCAGCTATGGTCTTATACGGAA-CAC-GTACCACATCAC
* * ***
14561676 ACCGACGCTATAGCCCAGCTATGGTCTTATACGGGAACACGTATCACATTGT
1 ACCGATGCTATAGCCCAGCTATGGTCTTATAC-GGAACACGTACCACATCAC
* *
14561728 ACCGATACCATAGCCCAGCTATGGTCTTATACGG
1 ACCGATGCTATAGCCCAGCTATGGTCTTATACGG
14561762 GCGCACATAT
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
51 2 0.03
52 36 0.49
53 32 0.43
54 4 0.05
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (51 bp):
ACCGATGCTATAGCCCAGCTATGGTCTTATACGGAACACGTACCACATCAC
Found at i:14566477 original size:27 final size:27
Alignment explanation
Indices: 14566378--14566507 Score: 154
Period size: 27 Copynumber: 4.8 Consensus size: 27
14566368 ACTCACGAGA
* * * *
14566378 AAATAGAAGCATTTGTGGAAATATATG
1 AAATGGAAGCCTTTGTGGCAATCTATG
*
14566405 AAATGGAAGCCTTTGTGGTAATCTATG
1 AAATGGAAGCCTTTGTGGCAATCTATG
*
14566432 AAATTGAAGCCTTTGTGGCAATCTATG
1 AAATGGAAGCCTTTGTGGCAATCTATG
* * *
14566459 AAATTGAAGCCTTTGTGGCGATCTAAGG
1 AAATGGAAGCCTTTGTGGCAATCT-ATG
14566487 AAA-GGAAAGCCTTTGTGGCAA
1 AAATGG-AAGCCTTTGTGGCAA
14566508 ATTGAGACAT
Statistics
Matches: 91, Mismatches: 10, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
27 72 0.79
28 19 0.21
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.29
Consensus pattern (27 bp):
AAATGGAAGCCTTTGTGGCAATCTATG
Found at i:14571070 original size:43 final size:43
Alignment explanation
Indices: 14571015--14571171 Score: 144
Period size: 42 Copynumber: 3.7 Consensus size: 43
14571005 AACATATACA
* *
14571015 ATGCCAAC-GTCCCAGACGTGATCTTACATGTAATCAAACATCG
1 ATGCCAACTGTCCCAGACATGGTCTTACATGTAATCAAA-ATCG
* * * *
14571058 ATGCC-ACTGTCCCAAACAAGGTCTTACACGAAATC-AAATACG
1 ATGCCAACTGTCCCAGACATGGTCTTACATGTAATCAAAAT-CG
* * *
14571100 ATGCCGA-TGTCCTAGACATGGTCTTACATGTAAAACAAAAGTCG
1 ATGCCAACTGTCCCAGACATGGTCTTACATGT-AATCAAAA-TCG
**
14571144 ATGCCAA-TGTCCCAGATGTGGTCTTACA
1 ATGCCAACTGTCCCAGACATGGTCTTACA
14571172 CAAAATGACA
Statistics
Matches: 92, Mismatches: 16, Indels: 11
0.77 0.13 0.09
Matches are distributed among these distances:
41 2 0.02
42 30 0.33
43 30 0.33
44 29 0.32
45 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCCAACTGTCCCAGACATGGTCTTACATGTAATCAAAATCG
Found at i:14571154 original size:44 final size:43
Alignment explanation
Indices: 14571015--14571171 Score: 158
Period size: 43 Copynumber: 3.7 Consensus size: 43
14571005 AACATATACA
* * *
14571015 ATGCCAACGTCCCAGACGTGATCTTACATGT-AATCAAACATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCAAA-ATCG
* * * *
14571058 ATGCCACTGTCCCAAACAAGGTCTTACACG-AAATC-AAATACG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCAAAAT-CG
* * *
14571100 ATGCCGATGTCCTAGACATGGTCTTACATGTAAAACAAAAGTCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCAAAA-TCG
**
14571144 ATGCCAATGTCCCAGATGTGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
14571172 CAAAATGACA
Statistics
Matches: 91, Mismatches: 18, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
41 2 0.02
42 28 0.31
43 31 0.34
44 29 0.32
45 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCAAAATCG
Found at i:14574785 original size:12 final size:13
Alignment explanation
Indices: 14574754--14574786 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
14574744 GAAAGGCTTT
14574754 CTAAAATTAGAAA
1 CTAAAATTAGAAA
14574767 CTAAAATTA-AAA
1 CTAAAATTAGAAA
*
14574779 TTAAAATT
1 CTAAAATT
14574787 GTCAAAAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 10 0.53
13 9 0.47
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.30
Consensus pattern (13 bp):
CTAAAATTAGAAA
Found at i:14575738 original size:19 final size:18
Alignment explanation
Indices: 14575714--14575750 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
14575704 TTCCAAAAAT
14575714 ATTAATTCATTTAATTAAA
1 ATTAATT-ATTTAATTAAA
*
14575733 ATTAATTTTTTAATTAAA
1 ATTAATTATTTAATTAAA
14575751 TTATTTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (18 bp):
ATTAATTATTTAATTAAA
Found at i:14575753 original size:17 final size:17
Alignment explanation
Indices: 14575723--14575757 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
14575713 TATTAATTCA
14575723 TTTAATTAAAATTAATTT
1 TTTAATTAAAATT-ATTT
14575741 TTTAATT-AAATTATTT
1 TTTAATTAAAATTATTT
14575757 T
1 T
14575758 CTCAACCCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 5 0.29
18 7 0.41
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TTTAATTAAAATTATTT
Found at i:14580771 original size:28 final size:28
Alignment explanation
Indices: 14580731--14580787 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
14580721 ATGCTACATC
*
14580731 ATGTAGAACTCATATACCTAGTGTACCA
1 ATGTAGAACTCATATACCTAGCGTACCA
14580759 ATGTAGAACTCATATACCTAGCGTACCA
1 ATGTAGAACTCATATACCTAGCGTACCA
14580787 A
1 A
14580788 CTTTCAGTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.37, C:0.23, G:0.14, T:0.26
Consensus pattern (28 bp):
ATGTAGAACTCATATACCTAGCGTACCA
Found at i:14584161 original size:20 final size:20
Alignment explanation
Indices: 14584136--14584175 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
14584126 ACTAAAATGT
14584136 AAAATTGTAAAATTTGATGA
1 AAAATTGTAAAATTTGATGA
* * *
14584156 AAAATTTTGAAATTTTATGA
1 AAAATTGTAAAATTTGATGA
14584176 GTACATGTGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.40
Consensus pattern (20 bp):
AAAATTGTAAAATTTGATGA
Found at i:14586958 original size:31 final size:32
Alignment explanation
Indices: 14586898--14586958 Score: 81
Period size: 31 Copynumber: 1.9 Consensus size: 32
14586888 TTTTAATTAT
* *
14586898 TAATATTATTTAATATTTTTATTTCATTTTTG
1 TAATATTAATTAATATTTTTATTTAATTTTTG
14586930 TAAT-TTAATTAATATTTTT-TTATAATTTT
1 TAATATTAATTAATATTTTTATT-TAATTTT
14586959 CTTATAACAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 2 0.08
31 20 0.77
32 4 0.15
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (32 bp):
TAATATTAATTAATATTTTTATTTAATTTTTG
Found at i:14588830 original size:20 final size:20
Alignment explanation
Indices: 14588807--14588846 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
14588797 AACTCGAATC
14588807 TAAATTACACAATTCGAGTT
1 TAAATTACACAATTCGAGTT
14588827 TAAATTACACAATTCGAGTT
1 TAAATTACACAATTCGAGTT
14588847 ATCCAAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (20 bp):
TAAATTACACAATTCGAGTT
Found at i:14591266 original size:40 final size:40
Alignment explanation
Indices: 14591208--14591297 Score: 108
Period size: 40 Copynumber: 2.2 Consensus size: 40
14591198 AATCAAACAC
* ***
14591208 GAGGTAAAGCGTGGCCACGTCAGTGCACTTTTGCTGACAA
1 GAGGTAAAGCGTGCCCACGTCAACACACTTTTGCTGACAA
* * * *
14591248 GGGGTAAAGTGTGCCCACGTCAACACGCTTTTGCTGACAC
1 GAGGTAAAGCGTGCCCACGTCAACACACTTTTGCTGACAA
14591288 GAGGTAAAGC
1 GAGGTAAAGC
14591298 ACTCTACGTC
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.26, C:0.23, G:0.30, T:0.21
Consensus pattern (40 bp):
GAGGTAAAGCGTGCCCACGTCAACACACTTTTGCTGACAA
Found at i:14591453 original size:21 final size:21
Alignment explanation
Indices: 14591423--14591468 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
14591413 AAGTTAGCCT
*
14591423 GTGTGGCTACTGCACACGCCC
1 GTGTGACTACTGCACACGCCC
*
14591444 GTGTGACTACTTCACACGCCC
1 GTGTGACTACTGCACACGCCC
14591465 GTGT
1 GTGT
14591469 TCTCAAACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.15, C:0.35, G:0.26, T:0.24
Consensus pattern (21 bp):
GTGTGACTACTGCACACGCCC
Found at i:14592675 original size:26 final size:26
Alignment explanation
Indices: 14592566--14592694 Score: 84
Period size: 26 Copynumber: 5.0 Consensus size: 26
14592556 ATTAAGAACT
* * * *
14592566 AGCTCACAGCTTGCTAGATAAATCAAC
1 AGCTCAAAGCCTGCTAAAT-AATCACC
* * *
14592593 AGCTCAAAGCCTACT-AGTAAAT-ACT
1 AGCTCAAAGCCTGCTAAAT-AATCACC
*
14592618 AGCTCAAAGCCTGCTAAATAATCATC
1 AGCTCAAAGCCTGCTAAATAATCACC
* *
14592644 AACTCAAAGCCTGTTAAA-ATATCACC
1 AGCTCAAAGCCTGCTAAATA-ATCACC
* * * *
14592670 TGCTCAAAGCTTTCTAAATGATCAC
1 AGCTCAAAGCCTGCTAAATAATCAC
14592695 ATACTCATTA
Statistics
Matches: 78, Mismatches: 20, Indels: 9
0.73 0.19 0.08
Matches are distributed among these distances:
25 19 0.24
26 47 0.60
27 12 0.15
ACGTcount: A:0.38, C:0.26, G:0.12, T:0.25
Consensus pattern (26 bp):
AGCTCAAAGCCTGCTAAATAATCACC
Found at i:14606119 original size:5 final size:5
Alignment explanation
Indices: 14606105--14606136 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
14606095 AAAAGAACTG
14606105 AAAGA AAA-A AAA-A AAAGA AAAGA AAAGA AAAG
1 AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA AAAG
14606137 CTACAATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 8 0.31
5 18 0.69
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (5 bp):
AAAGA
Found at i:14611184 original size:14 final size:15
Alignment explanation
Indices: 14611167--14611195 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14611157 GAGTATGTTA
14611167 AAATA-TTAAAAAAT
1 AAATATTTAAAAAAT
14611181 AAATATTTAAAAAAT
1 AAATATTTAAAAAAT
14611196 TACTAATAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAATATTTAAAAAAT
Found at i:14613014 original size:17 final size:16
Alignment explanation
Indices: 14612992--14613023 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
14612982 TTCTAATTAA
14612992 AATTAAAAATATATATT
1 AATTAAAAATA-ATATT
14613009 AATTAAAAATAATAT
1 AATTAAAAATAATAT
14613024 AAAACAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
AATTAAAAATAATATT
Found at i:14613032 original size:16 final size:16
Alignment explanation
Indices: 14613013--14613045 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
14613003 TATATTAATT
14613013 AAAAA-TAATATAAAAC
1 AAAAACTAATA-AAAAC
14613029 AAAAACTAATAAAAAC
1 AAAAACTAATAAAAAC
14613045 A
1 A
14613046 TACCATTGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.76, C:0.09, G:0.00, T:0.15
Consensus pattern (16 bp):
AAAAACTAATAAAAAC
Found at i:14613343 original size:21 final size:21
Alignment explanation
Indices: 14613314--14613353 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
14613304 TTTTTATATT
14613314 TTTAGATATCATTA-TAATTAA
1 TTTAGATAT-ATTATTAATTAA
*
14613335 TTTATATATATTATTAATT
1 TTTAGATATATTATTAATT
14613354 GGTACATGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.55
Consensus pattern (21 bp):
TTTAGATATATTATTAATTAA
Found at i:14614201 original size:41 final size:42
Alignment explanation
Indices: 14614123--14614219 Score: 133
Period size: 41 Copynumber: 2.3 Consensus size: 42
14614113 CACACACCTG
*
14614123 TGTGCCAGGCCGTGCACCCTTCGATGTAACCCCACACGCCCA
1 TGTGCCAGGCCGTGCACCCTTCAATGTAACCCCACACGCCCA
* * * **
14614165 TGTGTCAGGCTGTGTACCCTT-AATGTAACCCCACACGCCTG
1 TGTGCCAGGCCGTGCACCCTTCAATGTAACCCCACACGCCCA
14614206 TGTGCCAGGCCGTG
1 TGTGCCAGGCCGTG
14614220 TGCTAGGCTG
Statistics
Matches: 47, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
41 29 0.62
42 18 0.38
ACGTcount: A:0.18, C:0.36, G:0.25, T:0.22
Consensus pattern (42 bp):
TGTGCCAGGCCGTGCACCCTTCAATGTAACCCCACACGCCCA
Found at i:14618945 original size:39 final size:39
Alignment explanation
Indices: 14618891--14618971 Score: 153
Period size: 39 Copynumber: 2.1 Consensus size: 39
14618881 ATGCTACCTA
*
14618891 CATTAGTGGAGAGAGATTGTTGCGTGCAACATATGAAGG
1 CATTAGTGGAGAGAGATTGTTCCGTGCAACATATGAAGG
14618930 CATTAGTGGAGAGAGATTGTTCCGTGCAACATATGAAGG
1 CATTAGTGGAGAGAGATTGTTCCGTGCAACATATGAAGG
14618969 CAT
1 CAT
14618972 AAGTTAAACT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.31, C:0.12, G:0.31, T:0.26
Consensus pattern (39 bp):
CATTAGTGGAGAGAGATTGTTCCGTGCAACATATGAAGG
Found at i:14622378 original size:155 final size:155
Alignment explanation
Indices: 14622096--14622409 Score: 610
Period size: 155 Copynumber: 2.0 Consensus size: 155
14622086 CTCCCTCCTA
14622096 CCACAACTAGCCTTGATTTTCTCCTAAAATCCCTCCTCCAATCCTTCAAATTGATCACACCTCCC
1 CCACAACTAGCCTTGATTTTCTCCTAAAATCCCTCCTCCAATCCTTCAAATTGATCACACCTCCC
14622161 TCAACTGTTCAATTCAAATTCCCTTCAACCACTTCAATGTTTCAGTCAACCAAGGACACTTCCAC
66 TCAACTGTTCAATTCAAATTCCCTTCAACCACTTCAATGTTTCAGTCAACCAAGGACACTTCCAC
14622226 AGCATTTGCAGCAAAATAAAACACT
131 AGCATTTGCAGCAAAATAAAACACT
* *
14622251 CCACAACTAGCCTTGTTTTTCTCCTAAAATCCCTCCTCCACTCCTTCAAATTGATCACACCTCCC
1 CCACAACTAGCCTTGATTTTCTCCTAAAATCCCTCCTCCAATCCTTCAAATTGATCACACCTCCC
14622316 TCAACTGTTCAATTCAAATTCCCTTCAACCACTTCAATGTTTCAGTCAACCAAGGACACTTCCAC
66 TCAACTGTTCAATTCAAATTCCCTTCAACCACTTCAATGTTTCAGTCAACCAAGGACACTTCCAC
14622381 AGCATTTGCAGCAAAATAAAACACT
131 AGCATTTGCAGCAAAATAAAACACT
14622406 CCAC
1 CCAC
14622410 TGTCCCCACC
Statistics
Matches: 157, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
155 157 1.00
ACGTcount: A:0.31, C:0.34, G:0.07, T:0.28
Consensus pattern (155 bp):
CCACAACTAGCCTTGATTTTCTCCTAAAATCCCTCCTCCAATCCTTCAAATTGATCACACCTCCC
TCAACTGTTCAATTCAAATTCCCTTCAACCACTTCAATGTTTCAGTCAACCAAGGACACTTCCAC
AGCATTTGCAGCAAAATAAAACACT
Found at i:14623315 original size:21 final size:20
Alignment explanation
Indices: 14623270--14623315 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
14623260 TTGTTGGAAT
14623270 GGTT-AATTTAATCAATTTA
1 GGTTGAATTTAATCAATTTA
*
14623289 GCTTGAATTTAATTC-ATGTTA
1 GGTTGAATTTAA-TCAAT-TTA
14623310 GGTTGA
1 GGTTGA
14623316 TTGCATTTCG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.14
20 9 0.41
21 10 0.45
ACGTcount: A:0.30, C:0.07, G:0.17, T:0.46
Consensus pattern (20 bp):
GGTTGAATTTAATCAATTTA
Found at i:14625274 original size:107 final size:107
Alignment explanation
Indices: 14625088--14625301 Score: 419
Period size: 107 Copynumber: 2.0 Consensus size: 107
14625078 CTTGTACTAC
14625088 TCGATTTTAAGCAAAAACGAGTAAAAGGGCTTAATCGGTAAAAATACCTAATAGTCACAAGTACA
1 TCGATTTTAAGCAAAAACGAGTAAAAGGGCTTAATCGGTAAAAATACCTAATAGTCACAAGTACA
14625153 TGTTAGGGTGAGAATTTGATGTTGCCATAGAAGAGAAAAGTG
66 TGTTAGGGTGAGAATTTGATGTTGCCATAGAAGAGAAAAGTG
*
14625195 TCGATTTTAAGCAAAAACGAGTAAAAGGGCTTAATCGGTAAAAATATCTAATAGTCACAAGTACA
1 TCGATTTTAAGCAAAAACGAGTAAAAGGGCTTAATCGGTAAAAATACCTAATAGTCACAAGTACA
14625260 TGTTAGGGTGAGAATTTGATGTTGCCATAGAAGAGAAAAGTG
66 TGTTAGGGTGAGAATTTGATGTTGCCATAGAAGAGAAAAGTG
14625302 ATCAGCATGT
Statistics
Matches: 106, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
107 106 1.00
ACGTcount: A:0.40, C:0.11, G:0.23, T:0.26
Consensus pattern (107 bp):
TCGATTTTAAGCAAAAACGAGTAAAAGGGCTTAATCGGTAAAAATACCTAATAGTCACAAGTACA
TGTTAGGGTGAGAATTTGATGTTGCCATAGAAGAGAAAAGTG
Found at i:14635176 original size:53 final size:53
Alignment explanation
Indices: 14635101--14636021 Score: 1707
Period size: 53 Copynumber: 17.2 Consensus size: 53
14635091 GAAAAAAGGC
14635101 AAAGAAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAA
1 AAAG-AAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAA
* *
14635155 AAAGAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCAGAATAGAAGAAAAAA
1 AAAGAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAA
*
14635208 AAAGATGAAAAAAAAGAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAA
1 AAAGA--AGAAAAAA-AAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAA
*
14635264 AAAGAAGGAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAA
1 AAAGAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAA
14635317 AAAGAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAA
1 AAAGAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAA
14635370 AAAGAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAA
1 AAAGAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAA
14635423 AAAGAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAA
1 AAAGAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAA
14635476 AAAGAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAA
1 AAAGAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAA
14635529 AAAGAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAA
1 AAAGAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAA
14635582 AAAGAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAA
1 AAAGAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAA
14635635 AAAGAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAA
1 AAAGAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAA
14635688 AAAGAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAA
1 AAAGAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAA
14635741 AAAGAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAA
1 AAAGAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAA
14635794 AAAGAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAA
1 AAAGAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAA
14635847 AAAGAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAA
1 AAAGAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAA
* *
14635900 AAAGAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCAGAATAGAAGAAAAAA
1 AAAGAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAA
*
14635953 AAAGATGAAAAAAAAGAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAA
1 AAAGA--AGAAAAAA-AAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAA
*
14636009 AAAGAAGGAAAAA
1 AAAGAAGAAAAAA
14636022 GAGCTTTGAG
Statistics
Matches: 846, Mismatches: 15, Indels: 12
0.97 0.02 0.01
Matches are distributed among these distances:
53 730 0.86
54 16 0.02
55 14 0.02
56 86 0.10
ACGTcount: A:0.50, C:0.11, G:0.21, T:0.19
Consensus pattern (53 bp):
AAAGAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGAAAGAA
Found at i:14637364 original size:40 final size:40
Alignment explanation
Indices: 14637307--14637577 Score: 375
Period size: 40 Copynumber: 6.8 Consensus size: 40
14637297 CGGATGATAA
* * * *
14637307 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGAGTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTA-TAT
* *
14637347 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAT
* *
14637387 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAT
* * *
14637427 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAT
* *
14637467 CCGGACTAAGTCCCGAAGGCATTGGTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAT
*
14637507 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAT
* *
14637547 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
14637578 AGCTATATCC
Statistics
Matches: 208, Mismatches: 22, Indels: 3
0.89 0.09 0.01
Matches are distributed among these distances:
39 8 0.04
40 200 0.96
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAT
Found at i:14645460 original size:120 final size:120
Alignment explanation
Indices: 14645247--14645469 Score: 331
Period size: 120 Copynumber: 1.9 Consensus size: 120
14645237 CGGATGATAA
* * *
14645247 CCGGGCTAAGTCCCGAAGGCATTTGCACTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTGGCACGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGG
* *
14645312 TGTGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCTACTATAT
66 TGCGAGTTATTACATCCAGGCTAAGTCCCGAAGGCATTTGTGCTAGCTACTATAT
** * *
14645367 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTATTA-TATCCGGGCTAAGTCCCGAAGGCATTG
1 CCGGGCTAAGTCCCGAAGGCATTGGCACGAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATTG
* *
14645431 GTGCGAGTTATTATATCCAGGCTATGTCCCGAAGGCATT
65 GTGCGAGTTATTACATCCAGGCTAAGTCCCGAAGGCATT
14645470 GAGCGAGTAG
Statistics
Matches: 91, Mismatches: 11, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
119 1 0.01
120 90 0.99
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCATTGGCACGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGG
TGCGAGTTATTACATCCAGGCTAAGTCCCGAAGGCATTTGTGCTAGCTACTATAT
Found at i:14645470 original size:40 final size:40
Alignment explanation
Indices: 14645247--14645470 Score: 297
Period size: 40 Copynumber: 5.6 Consensus size: 40
14645237 CGGATGATAA
* ** * * *
14645247 CCGGGCTAAGTCCCGAAGGCATTTGCACTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTATTA-TAT
* * *
14645287 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTATTATAT
* * * *
14645327 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTATTATAT
14645367 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTATTATAT
14645407 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTATTATAT
* *
14645447 CCAGGCTATGTCCCGAAGGCATTG
1 CCGGGCTAAGTCCCGAAGGCATTG
14645471 AGCGAGTAGC
Statistics
Matches: 165, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
40 165 1.00
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTATTATAT
Found at i:14650864 original size:19 final size:19
Alignment explanation
Indices: 14650840--14650877 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
14650830 ACCAATGTCA
*
14650840 CCCACCGTAATTAAATTTG
1 CCCACCGTAATCAAATTTG
14650859 CCCACCGTAATCAAATTTG
1 CCCACCGTAATCAAATTTG
14650878 TTATTAACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.29, G:0.11, T:0.29
Consensus pattern (19 bp):
CCCACCGTAATCAAATTTG
Found at i:14651279 original size:20 final size:20
Alignment explanation
Indices: 14651251--14651290 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
14651241 TTTGGGGTAA
*
14651251 AGGGTGAAAAGTAA-AAGTTT
1 AGGGGGAAAA-TAATAAGTTT
14651271 AGGGGGAAAATAATAAGTTT
1 AGGGGGAAAATAATAAGTTT
14651291 TGAAGGTTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 3 0.17
20 15 0.83
ACGTcount: A:0.45, C:0.00, G:0.30, T:0.25
Consensus pattern (20 bp):
AGGGGGAAAATAATAAGTTT
Found at i:14651455 original size:164 final size:164
Alignment explanation
Indices: 14651175--14651502 Score: 502
Period size: 164 Copynumber: 2.0 Consensus size: 164
14651165 ATTTAATAAT
*
14651175 ATAAATAGTAGATCTAAATAAAATTATTACTATTTATATTTAGGGATTTTTTTAGATGACTTTTT
1 ATAAATAGTAGATATAAATAAAATTATTACTATTTATATTTAGGGATTTTTTTAGATGACTTTTT
*
14651240 ATTTGGGGTAAAGGGTGAAAAGTAAAAGTTTAGGGGGAAAATAATAAGTTTTGAAGGTTGGGAGA
66 ATTTGGGGTAAAGGGTGAAAAGTAAAAGTTTAGGGGGAAAATAAAAAGTTTTGAAGGTTGGGAGA
14651305 ATAAAATTTTTG-G-GAGAAAGTAAAT-GGGGAAAA
131 ATAAAA-TTTTGAGCG-GAAAGTAAATAGGGGAAAA
* * * **
14651338 ATAAATAGTAGATATAAATAAATTTATTAC-AGTTTATGTTTAGGGATTTTTTTTGGATGGTTTT
1 ATAAATAGTAGATATAAATAAAATTATTACTA-TTTATATTTAGGGA-TTTTTTTAGATGACTTT
* * *
14651402 TTATTTGGGGTAAAGGGTGAAAAGTAAAAGTTTAGGGGGGAAATAAAAAGTTTTGAGGGTTGGGG
64 TTATTTGGGGTAAAGGGTGAAAAGTAAAAGTTTAGGGGGAAAATAAAAAGTTTTGAAGGTTGGGA
14651467 GAATAAAATTTTGAGCGGAAAGTAAATAGGGGAAAA
129 GAATAAAATTTTGAGCGGAAAGTAAATAGGGGAAAA
14651503 TATTCAAAAA
Statistics
Matches: 150, Mismatches: 10, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
162 1 0.01
163 46 0.31
164 94 0.63
165 9 0.06
ACGTcount: A:0.38, C:0.02, G:0.26, T:0.34
Consensus pattern (164 bp):
ATAAATAGTAGATATAAATAAAATTATTACTATTTATATTTAGGGATTTTTTTAGATGACTTTTT
ATTTGGGGTAAAGGGTGAAAAGTAAAAGTTTAGGGGGAAAATAAAAAGTTTTGAAGGTTGGGAGA
ATAAAATTTTGAGCGGAAAGTAAATAGGGGAAAA
Found at i:14655319 original size:16 final size:16
Alignment explanation
Indices: 14655298--14655349 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
14655288 TTAGGCCTTA
14655298 TCACATATATACACTT
1 TCACATATATACACTT
*
14655314 TCACAT-TCAT-CAC-A
1 TCACATAT-ATACACTT
14655328 TCACATATATACACTT
1 TCACATATATACACTT
14655344 TCACAT
1 TCACAT
14655350 TCATCACATC
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
14 8 0.27
15 8 0.27
16 14 0.47
ACGTcount: A:0.37, C:0.29, G:0.00, T:0.35
Consensus pattern (16 bp):
TCACATATATACACTT
Found at i:14655329 original size:47 final size:47
Alignment explanation
Indices: 14654258--14655328 Score: 1980
Period size: 47 Copynumber: 22.7 Consensus size: 47
14654248 CCCTTCGGGA
* * * *
14654258 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * *
14654305 CCTGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
14654352 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
14654399 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
14654448 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
14654495 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
14654542 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
14654589 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
14654636 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
14654683 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
14654730 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
14654777 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
14654824 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
14654871 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
14654918 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
14654965 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
14655012 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
14655059 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
14655106 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
14655153 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
14655200 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
14655247 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
14655294 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
14655329 CACATATATA
Statistics
Matches: 1005, Mismatches: 17, Indels: 4
0.98 0.02 0.00
Matches are distributed among these distances:
47 959 0.95
49 46 0.05
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:14655332 original size:30 final size:30
Alignment explanation
Indices: 14655297--14655359 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
14655287 ATTAGGCCTT
14655297 ATCACATATATACACTTTCACATTCATCAC
1 ATCACATATATACACTTTCACATTCATCAC
14655327 ATCACATATATACACTTTCACATTCATCAC
1 ATCACATATATACACTTTCACATTCATCAC
14655357 ATC
1 ATC
14655360 GGCCATTAGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.37, C:0.30, G:0.00, T:0.33
Consensus pattern (30 bp):
ATCACATATATACACTTTCACATTCATCAC
Found at i:14655340 original size:77 final size:77
Alignment explanation
Indices: 14655250--14655396 Score: 267
Period size: 77 Copynumber: 1.9 Consensus size: 77
14655240 ATTAGGCCTT
* *
14655250 ATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACATT
14655315 CACATTCATCAC
66 CACATTCATCAC
*
14655327 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACATT
14655392 CACAT
66 CACAT
14655397 CACAATTATC
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
77 67 1.00
ACGTcount: A:0.33, C:0.28, G:0.05, T:0.33
Consensus pattern (77 bp):
ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACATT
CACATTCATCAC
Found at i:14658092 original size:40 final size:40
Alignment explanation
Indices: 14658048--14658309 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
14658038 GCTCCTCGTT
* *
14658048 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
14658088 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
14658128 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
14658167 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
14658206 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
14658245 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
14658286 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
14658310 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:14666068 original size:37 final size:37
Alignment explanation
Indices: 14666018--14666096 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
14666008 TTATTACGAA
* * *
14666018 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
14666055 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
14666092 GTCTT
1 GTCTT
14666097 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:14666293 original size:47 final size:47
Alignment explanation
Indices: 14666215--14666757 Score: 1014
Period size: 47 Copynumber: 11.6 Consensus size: 47
14666205 CCCTTCGGGA
* * * * *
14666215 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14666262 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14666309 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14666356 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14666403 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14666450 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14666497 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14666544 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14666591 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14666638 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14666685 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14666732 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
14666758 CACAATTATC
Statistics
Matches: 487, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 487 1.00
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:14670993 original size:25 final size:24
Alignment explanation
Indices: 14670957--14671025 Score: 75
Period size: 25 Copynumber: 2.8 Consensus size: 24
14670947 AATGAGGTAG
* *
14670957 CCACATAGGCTTTCCAGAGGATTCT
1 CCACAAAGGCTTTCCAGAGGA-TCA
* * *
14670982 CTACAAAGGCTTTCAAGATAGATCA
1 CCACAAAGGCTTTCCAGA-GGATCA
14671007 CCACAAAGGCTTTCCAGAG
1 CCACAAAGGCTTTCCAGAG
14671026 AATCTTGTGT
Statistics
Matches: 35, Mismatches: 8, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
25 33 0.94
26 2 0.06
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (24 bp):
CCACAAAGGCTTTCCAGAGGATCA
Found at i:14673534 original size:40 final size:40
Alignment explanation
Indices: 14673441--14673737 Score: 476
Period size: 40 Copynumber: 7.5 Consensus size: 40
14673431 AAGCCAAGTA
* * *
14673441 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
14673479 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
14673519 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
14673559 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
14673599 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
14673639 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
14673679 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
14673719 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
14673738 TTATCATCCG
Statistics
Matches: 246, Mismatches: 9, Indels: 6
0.94 0.03 0.02
Matches are distributed among these distances:
38 12 0.05
39 18 0.07
40 216 0.88
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:14676044 original size:44 final size:44
Alignment explanation
Indices: 14675921--14676045 Score: 148
Period size: 45 Copynumber: 2.8 Consensus size: 44
14675911 CGGGAAACTT
*
14675921 GCACACTTAGTGCCAAATA-A-ATAGCCGAAGCTATATCAATCTC
1 GCACACTTAGTG-CAAATATATATAGCCGAAGCTATCTCAATCTC
* * * *
14675964 -CATACTAAGAGCATATAAATATATAGCCGAAGCTATCTCAATCTC
1 GCACACTTAGTGCA-A-ATATATATAGCCGAAGCTATCTCAATCTC
*
14676009 GCACACTTAGTGCAAATATATATATCCGAAGCTATCT
1 GCACACTTAGTGCAAATATATATAGCCGAAGCTATCT
14676046 TGGTTTCGCA
Statistics
Matches: 67, Mismatches: 10, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
41 2 0.03
42 9 0.13
43 2 0.03
44 21 0.31
45 23 0.34
46 10 0.15
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.26
Consensus pattern (44 bp):
GCACACTTAGTGCAAATATATATAGCCGAAGCTATCTCAATCTC
Found at i:14676055 original size:44 final size:44
Alignment explanation
Indices: 14675921--14676065 Score: 143
Period size: 44 Copynumber: 3.3 Consensus size: 44
14675911 CGGGAAACTT
* *
14675921 GCACACTTAGTGCCAAATA-A-ATAGCCGAAGCTATATCAATCTC
1 GCACACTAAGTG-CAAATATATATAGCCGAAGCTATCTCAATCTC
* * *
14675964 -CATACTAAGAGCATATAAATATATAGCCGAAGCTATCTCAATCTC
1 GCACACTAAGTGCA-A-ATATATATAGCCGAAGCTATCTCAATCTC
* * *** *
14676009 GCACACTTAGTGCAAATATATATATCCGAAGCTATCTTGGTTTC
1 GCACACTAAGTGCAAATATATATAGCCGAAGCTATCTCAATCTC
14676053 GCACACTAAGTGC
1 GCACACTAAGTGC
14676066 CATAATTAAC
Statistics
Matches: 82, Mismatches: 15, Indels: 9
0.77 0.14 0.08
Matches are distributed among these distances:
41 2 0.02
42 9 0.11
43 2 0.02
44 36 0.44
45 23 0.28
46 10 0.12
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.27
Consensus pattern (44 bp):
GCACACTAAGTGCAAATATATATAGCCGAAGCTATCTCAATCTC
Found at i:14678670 original size:22 final size:22
Alignment explanation
Indices: 14678645--14678693 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
14678635 GTCACACGGG
14678645 CGTGTCCCTTGGACCACACCGA
1 CGTGTCCCTTGGACCACACCGA
* *
14678667 CGTGTCTCTTGGACCACACGGA
1 CGTGTCCCTTGGACCACACCGA
14678689 CGTGT
1 CGTGT
14678694 GAGGCCTGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.16, C:0.35, G:0.27, T:0.22
Consensus pattern (22 bp):
CGTGTCCCTTGGACCACACCGA
Found at i:14681689 original size:34 final size:34
Alignment explanation
Indices: 14681638--14681713 Score: 125
Period size: 34 Copynumber: 2.2 Consensus size: 34
14681628 GTATGCATTT
*
14681638 CTGATACTGTTACTGTAATGGGCTAAGGCCCACA
1 CTGATACTGGTACTGTAATGGGCTAAGGCCCACA
* *
14681672 CTGATACTGGTATTGTAATGGGCTAAGGCTCACA
1 CTGATACTGGTACTGTAATGGGCTAAGGCCCACA
14681706 CTGATACT
1 CTGATACT
14681714 AGATTGTCAC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (34 bp):
CTGATACTGGTACTGTAATGGGCTAAGGCCCACA
Found at i:14685673 original size:8 final size:8
Alignment explanation
Indices: 14685660--14685686 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
14685650 AAATAAGTTC
14685660 AAATTCTA
1 AAATTCTA
14685668 AAATTCTA
1 AAATTCTA
14685676 AAATTCTA
1 AAATTCTA
14685684 AAA
1 AAA
14685687 CTGGTATAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.56, C:0.11, G:0.00, T:0.33
Consensus pattern (8 bp):
AAATTCTA
Found at i:14694964 original size:43 final size:43
Alignment explanation
Indices: 14694911--14695008 Score: 110
Period size: 43 Copynumber: 2.3 Consensus size: 43
14694901 TGTGATTACA
* * * *
14694911 TGTAATACCATGCCT-GGGACATTGGCATTG-TATTGAGATTTTG
1 TGTAAGACCATGCCTAGGG-CATTGGCATCGTTAAT-AGATTTCG
* *
14694954 TGTAAGACCATGTCTAGGGCATTGGCATCGTTAATCGATTTCG
1 TGTAAGACCATGCCTAGGGCATTGGCATCGTTAATAGATTTCG
14694997 TGTAAGACCATG
1 TGTAAGACCATG
14695009 TTTGGGATAG
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
43 41 0.87
44 6 0.13
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (43 bp):
TGTAAGACCATGCCTAGGGCATTGGCATCGTTAATAGATTTCG
Found at i:14695639 original size:456 final size:456
Alignment explanation
Indices: 14694786--14695695 Score: 1660
Period size: 456 Copynumber: 2.0 Consensus size: 456
14694776 AATTTCTACA
14694786 AATGTCGAACGAGCAATTATGAGTATGAATCGACGAAGCTACAACATCCGAAAGTCCCTGTACGA
1 AATGTCGAACGAGCAATTATGAGTATGAATCGACGAAGCTACAACATCCGAAAGTCCCTGTACGA
14694851 ACCATAGGAATAGTATAGGATACGAATGTCATGACATTAGGTTATCGAGATGTGATTACATGTAA
66 ACCATAGGAATAGTATAGGATACGAATGTCATGACATTAGGTTATCGAGATGTGATTACATGTAA
14694916 TACCATGCCTGGGACATTGGCATTGTATTGAGATTTTGTGTAAGACCATGTCTAGGGCATTGGCA
131 TACCATGCCTGGGACATTGGCATTGTATTGAGATTTTGTGTAAGACCATGTCTAGGGCATTGGCA
*
14694981 TCGTTAATCGATTTCGTGTAAGACCATGTTTGGGATAGTGGCATCGATATGTGATAACATGTAAG
196 TCGTTAATCGATTTCGTGTAAAACCATGTTTGGGATAGTGGCATCGATATGTGATAACATGTAAG
14695046 ACCATATCTGGGATATGGCATTGTACGAGCTTATGTGATTTTCGAGTATCCTTAATGATTCCAAA
261 ACCATATCTGGGATATGGCATTGTACGAGCTTATGTGATTTTCGAGTATCCTTAATGATTCCAAA
* * *
14695111 TGGCTCAATGGGAAATGTTAAGTCGAGAAAGAATATGTGAATGAACTAAGTGACTTAGGTACGTA
326 CGACTCAACGGGAAATGTTAAGTCGAGAAAGAATATGTGAATGAACTAAGTGACTTAGGTACGTA
*
14695176 CAAGATTTATTCGAGTATTGAAAAGGGAAAATATTTGATGAACTTGATTACGACATTGAATATAC
391 CAAGATTTATTCGAGTATTGAAAAGGGAAAATATTTGATGAACTTGATTAAGACATTGAATATAC
14695241 G
456 G
* * *
14695242 AATGTCGAACGAGCAATTATGAGTATGAATCGATGAATCTACAACATCTGAAAGTCCCTGTACGA
1 AATGTCGAACGAGCAATTATGAGTATGAATCGACGAAGCTACAACATCCGAAAGTCCCTGTACGA
*
14695307 ACCATAGGAATAGTATAGGATATGAATGTCATGACATTAGGTTATCGAGATGTGATTACATGTAA
66 ACCATAGGAATAGTATAGGATACGAATGTCATGACATTAGGTTATCGAGATGTGATTACATGTAA
14695372 TACCATGCCTGGGACATTGGCATTGTATTGAGATTTTGTGTAAGACCATGTCT-GAGGCATTGGC
131 TACCATGCCTGGGACATTGGCATTGTATTGAGATTTTGTGTAAGACCATGTCTAG-GGCATTGGC
*
14695436 ATCGTTAATCGATTTCGTGTAAAACCCTGTTTGGGATAGTGGCATCGATATGTGATAACATGTAA
195 ATCGTTAATCGATTTCGTGTAAAACCATGTTTGGGATAGTGGCATCGATATGTGATAACATGTAA
* * * *
14695501 GACCATATCTGGGATATGGCATTGTATGAGCTTATGTGATTTTCGAGTATGCTTAATGATTTCGA
260 GACCATATCTGGGATATGGCATTGTACGAGCTTATGTGATTTTCGAGTATCCTTAATGATTCCAA
* *
14695566 ACGATTCAACGGGAAATGTTAAGTTGAGAAAGAATATGTGAATGAACTAAGTGACTTAGGTACGT
325 ACGACTCAACGGGAAATGTTAAGTCGAGAAAGAATATGTGAATGAACTAAGTGACTTAGGTACGT
14695631 ACAAGATTTATTCGAGTATTGAAAAGGGAAAATATTTGATGAACTTGATTAAGACATTGAATATA
390 ACAAGATTTATTCGAGTATTGAAAAGGGAAAATATTTGATGAACTTGATTAAGACATTGAATATA
14695696 TGTTCAATGA
Statistics
Matches: 437, Mismatches: 16, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
455 1 0.00
456 436 1.00
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.31
Consensus pattern (456 bp):
AATGTCGAACGAGCAATTATGAGTATGAATCGACGAAGCTACAACATCCGAAAGTCCCTGTACGA
ACCATAGGAATAGTATAGGATACGAATGTCATGACATTAGGTTATCGAGATGTGATTACATGTAA
TACCATGCCTGGGACATTGGCATTGTATTGAGATTTTGTGTAAGACCATGTCTAGGGCATTGGCA
TCGTTAATCGATTTCGTGTAAAACCATGTTTGGGATAGTGGCATCGATATGTGATAACATGTAAG
ACCATATCTGGGATATGGCATTGTACGAGCTTATGTGATTTTCGAGTATCCTTAATGATTCCAAA
CGACTCAACGGGAAATGTTAAGTCGAGAAAGAATATGTGAATGAACTAAGTGACTTAGGTACGTA
CAAGATTTATTCGAGTATTGAAAAGGGAAAATATTTGATGAACTTGATTAAGACATTGAATATAC
G
Found at i:14695864 original size:90 final size:90
Alignment explanation
Indices: 14695711--14695980 Score: 513
Period size: 90 Copynumber: 3.0 Consensus size: 90
14695701 AATGAGAAAG
* * *
14695711 CTTTGTGAATTTGAATGAGATTAGCCTTGTTAAGCATACTTGGAATGATATGTAAATGTTCATGT
1 CTTTGTGAATTTGAATGAGATTAACATTGTTAAGCATACTTGGATTGATATGTAAATGTTCATGT
14695776 GATGACTTTATTTGTATATGGCTTA
66 GATGACTTTATTTGTATATGGCTTA
14695801 CTTTGTGAATTTGAATGAGATTAACATTGTTAAGCATACTTGGATTGATATGTAAATGTTCATGT
1 CTTTGTGAATTTGAATGAGATTAACATTGTTAAGCATACTTGGATTGATATGTAAATGTTCATGT
14695866 GATGACTTTATTTGTATATGGCTTA
66 GATGACTTTATTTGTATATGGCTTA
14695891 CTTTGTGAATTTGAATGAGATTAACATTGTTAAGCATACTTGGATTGATATGTAAATGTTCATGT
1 CTTTGTGAATTTGAATGAGATTAACATTGTTAAGCATACTTGGATTGATATGTAAATGTTCATGT
14695956 GATGACTTTATTTGTATATGGCTTA
66 GATGACTTTATTTGTATATGGCTTA
14695981 AAGCTTACTT
Statistics
Matches: 177, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
90 177 1.00
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.43
Consensus pattern (90 bp):
CTTTGTGAATTTGAATGAGATTAACATTGTTAAGCATACTTGGATTGATATGTAAATGTTCATGT
GATGACTTTATTTGTATATGGCTTA
Found at i:14699593 original size:108 final size:108
Alignment explanation
Indices: 14699470--14699936 Score: 853
Period size: 108 Copynumber: 4.3 Consensus size: 108
14699460 TTGGTAAGAT
* * *
14699470 AAGGATATCATGTAAGACCATGTGAAGACATGGCACTGATGAGTTACTATAAGGCAAAGGTCCCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCA
14699535 TGTAAGACCATGCCAAGGCATGGCATTGGTGAGTCCATAAGGC
66 TGTAAGACCATGCCAAGGCATGGCATTGGTGAGTCCATAAGGC
*
14699578 AAGGATACCATGTAAGACCATGTCAAGAAATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCA
* *
14699643 TGTAAGACCATGCCAAGGCATGGGATTGGTGAGTTCATAAGGC
66 TGTAAGACCATGCCAAGGCATGGCATTGGTGAGTCCATAAGGC
14699686 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCA
14699751 TGTAAGACCATGCCAAGGCATGGCATTGGTGAGTCCATAAGGC
66 TGTAAGACCATGCCAAGGCATGGCATTGGTGAGTCCATAAGGC
*
14699794 AAGGATACCATGTAAGACCATGACAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCA
*
14699859 TGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
66 TGTAAGACCATGCCAAGGCATGGCATTGGTGAGTCCATAAGGC
*
14699902 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCA
14699937 ATGGTAAGTT
Statistics
Matches: 346, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
108 346 1.00
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (108 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCA
TGTAAGACCATGCCAAGGCATGGCATTGGTGAGTCCATAAGGC
Found at i:14699598 original size:53 final size:54
Alignment explanation
Indices: 14699470--14699951 Score: 548
Period size: 53 Copynumber: 8.9 Consensus size: 54
14699460 TTGGTAAGAT
* ** * * *
14699470 AAGGATATCATGTAAGACCATGTGAAGACATGGCACTGATGAGTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTGAG-T-CCATAAGGCA
* *
14699526 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTCCATAAGGC-
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTGAGTCCATAAGGCA
* * * *
14699578 AAGGATACCATGTAAGACCATGTCAAGAAATGGCATTGATGAGTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTGAG-T-CCATAAGGCA
* * * *
14699634 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGGATTGGTGAGTTCATAAGGC-
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTGAGTCCATAAGGCA
* * *
14699686 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTGAG-T-CCATAAGGCA
* *
14699742 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTCCATAAGGC-
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTGAGTCCATAAGGCA
* * *
14699794 AAGGATACCATGTAAGACCATGACAAGACATGGCATTGATGAGTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTGAG-T-CCATAAGGCA
* * *
14699850 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC-
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTGAGTCCATAAGGCA
* * * * *
14699902 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTGAGTCCATAA
14699952 AAGAAAAGGT
Statistics
Matches: 362, Mismatches: 51, Indels: 29
0.82 0.12 0.07
Matches are distributed among these distances:
52 16 0.04
53 169 0.47
54 7 0.02
55 154 0.43
56 16 0.04
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTGAGTCCATAAGGCA
Found at i:14710275 original size:25 final size:25
Alignment explanation
Indices: 14710247--14710295 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
14710237 TTATTTTTGA
*
14710247 TAGTATATCTTGAAACTGCTATAGG
1 TAGTATATCTTGAAACTACTATAGG
* *
14710272 TAGTATATGTTGAGACTACTATAG
1 TAGTATATCTTGAAACTACTATAG
14710296 TTAGATTGTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.37
Consensus pattern (25 bp):
TAGTATATCTTGAAACTACTATAGG
Found at i:14717786 original size:13 final size:13
Alignment explanation
Indices: 14717768--14717792 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14717758 CCGAACATAG
14717768 ATAGCCAAACATC
1 ATAGCCAAACATC
14717781 ATAGCCAAACAT
1 ATAGCCAAACAT
14717793 TTGGTCATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.28, G:0.08, T:0.16
Consensus pattern (13 bp):
ATAGCCAAACATC
Found at i:14720177 original size:16 final size:17
Alignment explanation
Indices: 14720140--14720180 Score: 57
Period size: 16 Copynumber: 2.4 Consensus size: 17
14720130 AACTTATTAT
14720140 ATGTTTCATTATATTAAC
1 ATGTTT-ATTATATTAAC
*
14720158 ATGTTTATTAT-TTTAC
1 ATGTTTATTATATTAAC
14720174 ATGTTTA
1 ATGTTTA
14720181 ACCTTTTAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 11 0.50
17 5 0.23
18 6 0.27
ACGTcount: A:0.29, C:0.07, G:0.07, T:0.56
Consensus pattern (17 bp):
ATGTTTATTATATTAAC
Found at i:14733680 original size:33 final size:33
Alignment explanation
Indices: 14733638--14733702 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
14733628 CATGCAGTAA
* *
14733638 CAGTCTGGGCCAGAGCCCTATTCAGTAACAGTT
1 CAGTCTGGGCCAGAGCCCTATACAGAAACAGTT
**
14733671 CAGTCTGGGCCTTAGCCCTATACAGAAACAGT
1 CAGTCTGGGCCAGAGCCCTATACAGAAACAGT
14733703 GTAGGCCTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (33 bp):
CAGTCTGGGCCAGAGCCCTATACAGAAACAGTT
Found at i:14735351 original size:28 final size:28
Alignment explanation
Indices: 14735311--14735364 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
14735301 TTTCAAAAGA
14735311 GAGTTCGGCACTTGCTATCTTGTATTTG
1 GAGTTCGGCACTTGCTATCTTGTATTTG
14735339 GAGTTCGGCACTTGCTATCTTGTATT
1 GAGTTCGGCACTTGCTATCTTGTATT
14735365 CGGCCAAACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.15, C:0.19, G:0.24, T:0.43
Consensus pattern (28 bp):
GAGTTCGGCACTTGCTATCTTGTATTTG
Found at i:14737349 original size:48 final size:48
Alignment explanation
Indices: 14737292--14737563 Score: 235
Period size: 48 Copynumber: 5.7 Consensus size: 48
14737282 TATGTGTGCC
* * *
14737292 AGTGCAAGACCACGTCTGGGACATGGCATCGGCCACGATATGAGGGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCT
* * * * * * *
14737340 AGTGTAAGACCATGTTTGGAACATGGCATTGGCGA-TATTGTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGA-TATGAGAGCT
* * * * * *
14737388 AGTGTAAGACAATGTCTAGGACATGGCATCAG-CATTGATATGTGCGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CGATATGAGAGCT
* * * * *
14737436 AGTGTAAGACCAAGTCTGGGACATGGCATAGG-CATTGAGATGAGATCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CGATATGAGAGCT
* * * * *
14737484 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAACATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCT
* * *
14737532 AGTGTAAGACCATGTTTGGAACATGACATCGG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG
14737564 TAACTCACCC
Statistics
Matches: 177, Mismatches: 43, Indels: 8
0.78 0.19 0.04
Matches are distributed among these distances:
47 2 0.01
48 173 0.98
49 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCT
Found at i:14737460 original size:96 final size:96
Alignment explanation
Indices: 14737289--14737556 Score: 272
Period size: 96 Copynumber: 2.8 Consensus size: 96
14737279 TAATATGTGT
* * * * *
14737289 GCCAGTGCAAGACCACGTCTGGGACATGGCATCGGCCACGATATGAGGGCTAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATATGAGCGCTAGTGTAAGACCAAG
* * *
14737354 TTTGGAACATGGCATTGGCGATAT-TG-TGAGA
66 TCTGGAACATGGCATAGGC-AT-TGAGATGAGA
* * * *
14737385 GCCAGTGTAAGACAATGTCTAGGACATGGCATCAG-CATTGATATGTGCGCTAGTGTAAGACCAA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCA-CGATATGAGCGCTAGTGTAAGACCAA
*
14737449 GTCTGGGACATGGCATAGGCATTGAGATGAGA
65 GTCTGGAACATGGCATAGGCATTGAGATGAGA
* * * * * * * * * *
14737481 TCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAACATGTGAGCCAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATATGAGCGCTAGTGTAAGACCAAG
*
14737546 TTTGGAACATG
66 TCTGGAACATG
14737557 ACATCGGTAA
Statistics
Matches: 141, Mismatches: 27, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
94 1 0.01
95 5 0.04
96 134 0.95
97 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (96 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATATGAGCGCTAGTGTAAGACCAAG
TCTGGAACATGGCATAGGCATTGAGATGAGA
Found at i:14737541 original size:144 final size:144
Alignment explanation
Indices: 14737281--14737546 Score: 338
Period size: 144 Copynumber: 1.8 Consensus size: 144
14737271 CATTTGGTTA
* * * * *
14737281 ATATGTGTGCCAGTGCAAGACCACGTCTGGGACATGGCATCGGCCACGATATGAGGGCTAGTGTA
1 ATATGTGCGCCAGTGCAAGACCAAGTCTGGGACATGGCATAGGCCACGAGATGAGAGCTAGTGTA
* * ***
14737346 AGACCATGTTTGGAACATGGCATTGGCGATATTGTGAGAGCCAGTGTAAGACAATGTCTAGGACA
66 AGACCATGTCTGGAACATGGCATCGGCGATAACATGAGAGCCAGTGTAAGACAATGTCTAGGACA
14737411 TGGCATCAGCATTG
131 TGGCATCAGCATTG
* * * *
14737425 ATATGTGCGCTAGTGTAAGACCAAGTCTGGGACATGGCATAGG-CATTGAGATGAGATCTAGTGT
1 ATATGTGCGCCAGTGCAAGACCAAGTCTGGGACATGGCATAGGCCA-CGAGATGAGAGCTAGTGT
* * * *
14737489 AAGACCATGTCTGGGACATGGCATCGGC-CTCAACATGTGAGCCAGTGTAAGACCATGT
65 AAGACCATGTCTGGAACATGGCATCGGCGAT-AACATGAGAGCCAGTGTAAGACAATGT
14737547 TTGGAACATG
Statistics
Matches: 102, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
143 3 0.03
144 99 0.97
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (144 bp):
ATATGTGCGCCAGTGCAAGACCAAGTCTGGGACATGGCATAGGCCACGAGATGAGAGCTAGTGTA
AGACCATGTCTGGAACATGGCATCGGCGATAACATGAGAGCCAGTGTAAGACAATGTCTAGGACA
TGGCATCAGCATTG
Found at i:14739837 original size:39 final size:40
Alignment explanation
Indices: 14739742--14740003 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
14739732 TTGAATGATG
*
14739742 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
14739780 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
14739821 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
14739860 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
14739899 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
14739938 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
14739977 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
14740004 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:14749687 original size:40 final size:40
Alignment explanation
Indices: 14749598--14749861 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
14749588 TTGAATGATG
* *
14749598 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
14749637 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
14749677 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
14749716 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
14749756 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
14749796 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
14749837 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
14749862 AACGAGGAGC
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
39 53 0.26
40 143 0.69
41 10 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:14749879 original size:120 final size:118
Alignment explanation
Indices: 14749598--14749894 Score: 338
Period size: 119 Copynumber: 2.5 Consensus size: 118
14749588 TTGAATGATG
* *
14749598 TCCGGGCTAAGTCCCGAAGGC-TTGTG--CTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGCATT-TGAAC-GAGTGACTAA-ATCCGG-TTAA-ATCCCGAAGGC
* *
14749658 ATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
61 ATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
* ** * *
14749716 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
* *
14749781 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
65 GTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTA-AA
* * *
14749837 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
14749895 TATGTGATTT
Statistics
Matches: 153, Mismatches: 17, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
118 23 0.15
119 64 0.42
120 64 0.42
121 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (118 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
Found at i:14751052 original size:30 final size:29
Alignment explanation
Indices: 14751006--14751063 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 29
14750996 TATCAAAGCT
*
14751006 ATACATGAACTTTGATTTGGTGCAATTTG
1 ATACATGAACTTTGATTTGATGCAATTTG
* *
14751035 ATACATGAAATTTTGATTTGATTCAATTT
1 ATACATG-AACTTTGATTTGATGCAATTT
14751064 TCAAAAATCA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 7 0.28
30 18 0.72
ACGTcount: A:0.31, C:0.09, G:0.16, T:0.45
Consensus pattern (29 bp):
ATACATGAACTTTGATTTGATGCAATTTG
Found at i:14752785 original size:27 final size:26
Alignment explanation
Indices: 14752755--14752813 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
14752745 TCTCCATTCA
14752755 CATCTCTTACAACTTATCCAGCAACTG
1 CATCTCTTACAACTTAT-CAGCAACTG
* ** * *
14752782 CATCACTTGTAACTTCTTAGCAACTG
1 CATCTCTTACAACTTATCAGCAACTG
14752808 CATCTC
1 CATCTC
14752814 CGGAATCCAA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
26 13 0.50
27 13 0.50
ACGTcount: A:0.27, C:0.32, G:0.08, T:0.32
Consensus pattern (26 bp):
CATCTCTTACAACTTATCAGCAACTG
Found at i:14758107 original size:46 final size:46
Alignment explanation
Indices: 14758057--14758314 Score: 204
Period size: 46 Copynumber: 5.6 Consensus size: 46
14758047 TTGGGCATCC
* *
14758057 GAACTCGTTGAGTTTAGTCCGAGTTCACTTATGGATGCAAACGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCT
* * * *
14758103 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CGTCT
* * * * *
14758150 GAGCTTGTTGAGTTGAATCCGAGTTTACTTATGGATGCGAACGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCT
* * * * *
14758196 GAACTCATTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CGTCT
* * * * *
14758243 GAGCTTGTTGAGTTGAATCCGAGTTTACTTATGGATGCGAACGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCT
*
14758289 GAACTCATTGAGTTGAGTCCGAGTTC
1 GAACTCGTTGAGTTGAGTCCGAGTTC
14758315 GTGAGATGTA
Statistics
Matches: 158, Mismatches: 40, Indels: 28
0.70 0.18 0.12
Matches are distributed among these distances:
43 11 0.07
45 6 0.04
46 75 0.47
47 50 0.32
48 6 0.04
50 10 0.06
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCT
Found at i:14758171 original size:47 final size:47
Alignment explanation
Indices: 14758106--14758361 Score: 221
Period size: 47 Copynumber: 5.5 Consensus size: 47
14758096 AACGTCCGAA
14758106 CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCTGAG
1 CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCTGAG
* * * * *
14758153 CTTGTTGAGTTGAATCCGAGTTTAC-TTATGGATGCGAAC---G--TCTGAA
1 CTCGTTGAGTTGAGTCCGAG-TT-CGTGA--GATG-TAACTAGGCATCTGAG
*
14758199 CTCATTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCTGAG
1 CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCTGAG
* * * * *
14758246 CTTGTTGAGTTGAATCCGAGTTTAC-TTATGGATGCGAAC---G--TCTGAA
1 CTCGTTGAGTTGAGTCCGAG-TT-CGTGA--GATG-TAACTAGGCATCTGAG
* *
14758292 CTCATTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCTGAG
14758339 CTCGTTGAGTTGAGTCCGAGTTC
1 CTCGTTGAGTTGAGTCCGAGTTC
14758362 ACTTATGGNN
Statistics
Matches: 162, Mismatches: 25, Indels: 44
0.70 0.11 0.19
Matches are distributed among these distances:
42 6 0.04
43 8 0.05
44 2 0.01
45 10 0.06
46 44 0.27
47 66 0.41
48 10 0.06
49 2 0.01
50 8 0.05
51 6 0.04
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (47 bp):
CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCTGAG
Found at i:14758172 original size:93 final size:93
Alignment explanation
Indices: 14758063--14758369 Score: 524
Period size: 93 Copynumber: 3.3 Consensus size: 93
14758053 ATCCGAACTC
* * * * *
14758063 GTTGAGTTTAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGTTGAGTCCGAGTT
1 GTTGAGTTGAATCCGAGTTCACTTATGGATGCGAACGTCTGAACTCATTGAGTTGAGTCCGAGTT
14758128 CGTGAGATGTAACTAGGCATCTGAGCTT
66 CGTGAGATGTAACTAGGCATCTGAGCTT
*
14758156 GTTGAGTTGAATCCGAGTTTACTTATGGATGCGAACGTCTGAACTCATTGAGTTGAGTCCGAGTT
1 GTTGAGTTGAATCCGAGTTCACTTATGGATGCGAACGTCTGAACTCATTGAGTTGAGTCCGAGTT
14758221 CGTGAGATGTAACTAGGCATCTGAGCTT
66 CGTGAGATGTAACTAGGCATCTGAGCTT
*
14758249 GTTGAGTTGAATCCGAGTTTACTTATGGATGCGAACGTCTGAACTCATTGAGTTGAGTCCGAGTT
1 GTTGAGTTGAATCCGAGTTCACTTATGGATGCGAACGTCTGAACTCATTGAGTTGAGTCCGAGTT
* *
14758314 CGTGAGATGTAACTAGGCATCCGAGCTC
66 CGTGAGATGTAACTAGGCATCTGAGCTT
*
14758342 GTTGAGTTGAGTCCGAGTTCACTTATGG
1 GTTGAGTTGAATCCGAGTTCACTTATGG
14758370 NNNNNNNNNN
Statistics
Matches: 204, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 204 1.00
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (93 bp):
GTTGAGTTGAATCCGAGTTCACTTATGGATGCGAACGTCTGAACTCATTGAGTTGAGTCCGAGTT
CGTGAGATGTAACTAGGCATCTGAGCTT
Found at i:14778577 original size:46 final size:46
Alignment explanation
Indices: 14778527--14778646 Score: 161
Period size: 46 Copynumber: 2.6 Consensus size: 46
14778517 GAGAGCCAAC
* * * *
14778527 GTAAGACATGTCTGGGACATGCATCGGCATTGAGACG-AGAACTAGT
1 GTAAGACATGTCTGGGACATGCATCAGCATCGAAACGTA-AACCAGT
* *
14778573 GTAAGACATGTCTGGGACATGCATCAGCCTCGAAACGTAAGCCAGT
1 GTAAGACATGTCTGGGACATGCATCAGCATCGAAACGTAAACCAGT
*
14778619 GTGAGACATGTCTGGGACATGCATCAGC
1 GTAAGACATGTCTGGGACATGCATCAGC
14778647 TACGAGATGA
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
46 65 0.98
47 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.21
Consensus pattern (46 bp):
GTAAGACATGTCTGGGACATGCATCAGCATCGAAACGTAAACCAGT
Found at i:14790753 original size:106 final size:106
Alignment explanation
Indices: 14790568--14790816 Score: 498
Period size: 106 Copynumber: 2.3 Consensus size: 106
14790558 TAAACTTACC
14790568 ATTTCTTCAACTTGGCATATTTCAAATTGACTACTACATACAGGAAAAACAAGAAAATCTTAGGG
1 ATTTCTTCAACTTGGCATATTTCAAATTGACTACTACATACAGGAAAAACAAGAAAATCTTAGGG
14790633 TAGCAAACATTCTCTAGAATTTCTCTTAGATTCGAACCCAT
66 TAGCAAACATTCTCTAGAATTTCTCTTAGATTCGAACCCAT
14790674 ATTTCTTCAACTTGGCATATTTCAAATTGACTACTACATACAGGAAAAACAAGAAAATCTTAGGG
1 ATTTCTTCAACTTGGCATATTTCAAATTGACTACTACATACAGGAAAAACAAGAAAATCTTAGGG
14790739 TAGCAAACATTCTCTAGAATTTCTCTTAGATTCGAACCCAT
66 TAGCAAACATTCTCTAGAATTTCTCTTAGATTCGAACCCAT
14790780 ATTTCTTCAACTTGGCATATTTCAAATTGACTACTAC
1 ATTTCTTCAACTTGGCATATTTCAAATTGACTACTAC
14790817 TGTAACACCC
Statistics
Matches: 143, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
106 143 1.00
ACGTcount: A:0.36, C:0.20, G:0.12, T:0.33
Consensus pattern (106 bp):
ATTTCTTCAACTTGGCATATTTCAAATTGACTACTACATACAGGAAAAACAAGAAAATCTTAGGG
TAGCAAACATTCTCTAGAATTTCTCTTAGATTCGAACCCAT
Found at i:14791788 original size:60 final size:60
Alignment explanation
Indices: 14791712--14791843 Score: 162
Period size: 60 Copynumber: 2.2 Consensus size: 60
14791702 ACTGGACCTC
14791712 AGCCCATATCAATATTAATCTGGGCCATAGCCC-CTTAC-AGT-ATCAGAGTATATTGGGCCT
1 AGCCCATATCAATATTAATCTGGGCCATAGCCCTCTTACGAGTCA--AGA-TATATTGGGCCT
* * * * *
14791772 AGCCCATATCAGTATTAATCTGGGTCGTCGCCCTGTTACGAGTCAAGATATATTGGGCCT
1 AGCCCATATCAATATTAATCTGGGCCATAGCCCTCTTACGAGTCAAGATATATTGGGCCT
*
14791832 TGCCCATATCAA
1 AGCCCATATCAA
14791844 CATAGTTGGG
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
60 51 0.82
61 7 0.11
62 3 0.05
63 1 0.02
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.29
Consensus pattern (60 bp):
AGCCCATATCAATATTAATCTGGGCCATAGCCCTCTTACGAGTCAAGATATATTGGGCCT
Found at i:14791858 original size:20 final size:19
Alignment explanation
Indices: 14791833--14791889 Score: 51
Period size: 19 Copynumber: 2.9 Consensus size: 19
14791823 ATTGGGCCTT
*
14791833 GCCCATATCAACATAGTTGG
1 GCCCATATCAAAATAGTT-G
* * * *
14791853 GCCCATTTTAATACAGTTG
1 GCCCATATCAAAATAGTTG
*
14791872 GCCCATAACAAAATAGTT
1 GCCCATATCAAAATAGTT
14791890 TCATATGATT
Statistics
Matches: 28, Mismatches: 9, Indels: 1
0.74 0.24 0.03
Matches are distributed among these distances:
19 14 0.50
20 14 0.50
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (19 bp):
GCCCATATCAAAATAGTTG
Found at i:14795447 original size:43 final size:43
Alignment explanation
Indices: 14795400--14795537 Score: 129
Period size: 42 Copynumber: 3.2 Consensus size: 43
14795390 TCCCGGACGT
* *
14795400 GGTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAGATAG
1 GGTCTTACATGTAATTCAATATCGATGCCTATGTCCCAGACAG
* * * *
14795443 GGTCTTACACG-AAATCAGATAT-GATGCCGATGTCCCAGACAT
1 GGTCTTACATGTAATTCA-ATATCGATGCCTATGTCCCAGACAG
* * * * *
14795485 GGTCTTACATGTAAATCTCAA-ATCGAGGCCTGTGTCTCGGACAC
1 GGTCTTACATGT-AAT-TCAATATCGATGCCTATGTCCCAGACAG
14795529 GGTCTTACA
1 GGTCTTACA
14795538 CGATATCTCA
Statistics
Matches: 76, Mismatches: 14, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
42 31 0.41
43 16 0.21
44 26 0.34
45 3 0.04
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (43 bp):
GGTCTTACATGTAATTCAATATCGATGCCTATGTCCCAGACAG
Found at i:14795479 original size:42 final size:43
Alignment explanation
Indices: 14795381--14795501 Score: 122
Period size: 42 Copynumber: 2.8 Consensus size: 43
14795371 AACAGATACA
* * * *
14795381 ATGCCGACGTCCCGGAC-GTGGTCTTACATGTAATTCAATATCG
1 ATGCCGATGTCCCAGACAG-GGTCTTACACGTAAATCAATATCG
** *
14795424 ATGCCTCTGTCCCAGATAGGGTCTTACACG-AAATCAGATAT-G
1 ATGCCGATGTCCCAGACAGGGTCTTACACGTAAATCA-ATATCG
* *
14795466 ATGCCGATGTCCCAGACATGGTCTTACATGTAAATC
1 ATGCCGATGTCCCAGACAGGGTCTTACACGTAAATC
14795502 TCAAATCGAG
Statistics
Matches: 63, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
42 31 0.49
43 31 0.49
44 1 0.02
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.27
Consensus pattern (43 bp):
ATGCCGATGTCCCAGACAGGGTCTTACACGTAAATCAATATCG
Found at i:14797129 original size:21 final size:22
Alignment explanation
Indices: 14797083--14797132 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
14797073 TGCTGGGCTC
**
14797083 ACACGCCTGTGTGGTCCAAGGG
1 ACACGCCTGTGTGACCCAAGGG
*
14797105 ACACGCCTGTGTGACCCTA-GG
1 ACACGCCTGTGTGACCCAAGGG
14797126 ACACGCC
1 ACACGCC
14797133 CGTGCTAGAG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 9 0.36
22 16 0.64
ACGTcount: A:0.20, C:0.34, G:0.30, T:0.16
Consensus pattern (22 bp):
ACACGCCTGTGTGACCCAAGGG
Found at i:14802092 original size:25 final size:25
Alignment explanation
Indices: 14802035--14802110 Score: 88
Period size: 25 Copynumber: 3.2 Consensus size: 25
14802025 AAGTACTATA
14802035 CAGAGAGCAC-AGATGTGCT-A-AA-
1 CAGAGAGCACTA-ATGTGCTAATAAT
*
14802057 CGGAGAGCACTAATGTGCTAATAAT
1 CAGAGAGCACTAATGTGCTAATAAT
* *
14802082 CAGAGAGCACTAACGTACTAATAAT
1 CAGAGAGCACTAATGTGCTAATAAT
14802107 CAGA
1 CAGA
14802111 TAGCGCGCTA
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
22 16 0.35
23 2 0.04
24 2 0.04
25 26 0.57
ACGTcount: A:0.41, C:0.18, G:0.22, T:0.18
Consensus pattern (25 bp):
CAGAGAGCACTAATGTGCTAATAAT
Found at i:14802511 original size:7 final size:7
Alignment explanation
Indices: 14802499--14802525 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
14802489 CATACACATA
14802499 ATTTAAC
1 ATTTAAC
14802506 ATTTAAC
1 ATTTAAC
14802513 ATTTAAC
1 ATTTAAC
14802520 ATTTAA
1 ATTTAA
14802526 TAATGAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (7 bp):
ATTTAAC
Found at i:14806061 original size:44 final size:41
Alignment explanation
Indices: 14805979--14806062 Score: 96
Period size: 44 Copynumber: 2.0 Consensus size: 41
14805969 CCTGATCAGT
* *
14805979 ATACGACACATAAGTGCCTGAAATGACACACGAGGTGTCTA
1 ATACGACACATAAGTGCCTGAAATGACACACAAAGTGTCTA
* * *
14806020 ATACGACGCATGAGGTGCCTGAAACATGACACATAAAGTGTCT
1 ATACGACACAT-AAGTGCCTG-AA-ATGACACACAAAGTGTCT
14806063 GATCGGCAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
41 10 0.29
42 8 0.23
43 2 0.06
44 15 0.43
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (41 bp):
ATACGACACATAAGTGCCTGAAATGACACACAAAGTGTCTA
Found at i:14812662 original size:21 final size:21
Alignment explanation
Indices: 14812636--14812676 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
14812626 ACATTAAATA
14812636 TACTTTATTAACAAAACCATT
1 TACTTTATTAACAAAACCATT
14812657 TACTTTATTAACAAAACCAT
1 TACTTTATTAACAAAACCAT
14812677 GAAAAATTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.44, C:0.20, G:0.00, T:0.37
Consensus pattern (21 bp):
TACTTTATTAACAAAACCATT
Found at i:14815034 original size:13 final size:13
Alignment explanation
Indices: 14815012--14815073 Score: 72
Period size: 13 Copynumber: 4.8 Consensus size: 13
14815002 TTTGGTAATA
14815012 CTTTTGAAAAGTG
1 CTTTTGAAAAGTG
*
14815025 CTTTTAAAAAGTG
1 CTTTTGAAAAGTG
*
14815038 -TTGTGGAAAAGTG
1 CTT-TTGAAAAGTG
* *
14815051 TTTTTGAGAAGTG
1 CTTTTGAAAAGTG
14815064 CTTTTGAAAA
1 CTTTTGAAAA
14815074 TTTTAGGTGT
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
12 2 0.05
13 36 0.90
14 2 0.05
ACGTcount: A:0.32, C:0.05, G:0.24, T:0.39
Consensus pattern (13 bp):
CTTTTGAAAAGTG
Found at i:14815749 original size:13 final size:13
Alignment explanation
Indices: 14815728--14815757 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
14815718 GGCCAACCAA
*
14815728 ACTTTTCAAAAGC
1 ACTTATCAAAAGC
14815741 ACTTATCAAAAGC
1 ACTTATCAAAAGC
14815754 ACTT
1 ACTT
14815758 TTTCAGAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (13 bp):
ACTTATCAAAAGC
Found at i:14824001 original size:16 final size:17
Alignment explanation
Indices: 14823972--14824021 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
14823962 TTGGGTCCTG
14823972 TCAGA-TTAGAATTTTT
1 TCAGACTTAGAATTTTT
14823988 TCAGACTTAG-ATTTATT
1 TCAGACTTAGAATTT-TT
*
14824005 GCAGACTT-GAATTTTT
1 TCAGACTTAGAATTTTT
14824021 T
1 T
14824022 TTAATTCAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
16 12 0.41
17 17 0.59
ACGTcount: A:0.28, C:0.10, G:0.14, T:0.48
Consensus pattern (17 bp):
TCAGACTTAGAATTTTT
Found at i:14827057 original size:13 final size:14
Alignment explanation
Indices: 14827013--14827057 Score: 51
Period size: 13 Copynumber: 3.4 Consensus size: 14
14827003 CATGTCCATC
14827013 TCAGATACAGATAA
1 TCAGATACAGATAA
*
14827027 TGA-ATACAGAT-A
1 TCAGATACAGATAA
14827039 TACAGAT-CAGATAA
1 T-CAGATACAGATAA
14827053 TCAGA
1 TCAGA
14827058 ATCCTAGCCC
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
12 2 0.08
13 18 0.69
14 6 0.23
ACGTcount: A:0.49, C:0.13, G:0.16, T:0.22
Consensus pattern (14 bp):
TCAGATACAGATAA
Found at i:14845427 original size:36 final size:36
Alignment explanation
Indices: 14845387--14845458 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
14845377 AGAATGTGTA
*
14845387 GGATACAAATGTCATGACATTAGGGTTTAAGGATAC
1 GGATACAAATGTCATGAAATTAGGGTTTAAGGATAC
14845423 GGATACAAATGTCATGAAATTAGGGTTTAAGGATAC
1 GGATACAAATGTCATGAAATTAGGGTTTAAGGATAC
14845459 CAAGTAAGAC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.38, C:0.10, G:0.25, T:0.28
Consensus pattern (36 bp):
GGATACAAATGTCATGAAATTAGGGTTTAAGGATAC
Found at i:14845580 original size:55 final size:53
Alignment explanation
Indices: 14845454--14845650 Score: 160
Period size: 55 Copynumber: 3.7 Consensus size: 53
14845444 AGGGTTTAAG
* * * * * * ** * *
14845454 GATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGCAAG
1 GATACCATGTAAGACCATGTCAAGACATGGCAATGATAA-CTACATAAGGCAAA
* * *
14845508 GAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGCAAA
1 GATACCATGTAAGACCATGTCAAGACATGGCAATGAT-AACTAC-ATAAGGCAAA
* * * * * * *
14845563 GATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGCAAA
1 GATACCATGTAAGACCATGTCAAGACATGGCAATGATAACTACATAAGGCAAA
* * *
14845616 GATACCATGTAAGACTATGTTAAGACATGGAAATG
1 GATACCATGTAAGACCATGTCAAGACATGGCAATG
14845651 GTAAGTTTAA
Statistics
Matches: 114, Mismatches: 27, Indels: 5
0.78 0.18 0.03
Matches are distributed among these distances:
53 39 0.34
54 35 0.31
55 40 0.35
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.21
Consensus pattern (53 bp):
GATACCATGTAAGACCATGTCAAGACATGGCAATGATAACTACATAAGGCAAA
Found at i:14845627 original size:53 final size:53
Alignment explanation
Indices: 14845454--14845657 Score: 201
Period size: 53 Copynumber: 3.8 Consensus size: 53
14845444 AGGGTTTAAG
* * * * * *
14845454 GATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGCAAA
* * * * * * *
14845508 GAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGCAAA
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGCAAA
* * *
14845563 GATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGCAAA
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAA
* ** *
14845616 GATACCATGTAAGACTATGTTAAGACATGGAAATGGTAAGTT
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
14845658 TAAAAAGGAA
Statistics
Matches: 120, Mismatches: 28, Indels: 5
0.78 0.18 0.03
Matches are distributed among these distances:
53 45 0.38
54 35 0.29
55 40 0.33
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.22
Consensus pattern (53 bp):
GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAA
Found at i:14845675 original size:53 final size:53
Alignment explanation
Indices: 14845454--14845680 Score: 168
Period size: 53 Copynumber: 4.2 Consensus size: 53
14845444 AGGGTTTAAG
* * * * * * *
14845454 GATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGAAATGGTAAG-TTAAAAAGGCAAA
* * * * * * ** *
14845508 GAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGCAAA
1 GATACCATGTAAGACCATGCCAAGACATGGAAATGGTAAGTTA--AAAAGGCAAA
* * * * * *
14845563 GATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGCAAA
1 GATACCATGTAAGACCATGCCAAGACATGGAAATGGTAAGTTAAAAAGGCAAA
* **
14845616 GATACCATGTAAGACTATGTTAAGACATGGAAATGGTAAGTTTAAAAAGG-AAA
1 GATACCATGTAAGACCATGCCAAGACATGGAAATGGTAAG-TTAAAAAGGCAAA
*
14845669 GGTACCAGTGTA
1 GATACCA-TGTA
14845681 TCCTTACTAT
Statistics
Matches: 137, Mismatches: 32, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
53 53 0.39
54 44 0.32
55 40 0.29
ACGTcount: A:0.39, C:0.16, G:0.24, T:0.22
Consensus pattern (53 bp):
GATACCATGTAAGACCATGCCAAGACATGGAAATGGTAAGTTAAAAAGGCAAA
Found at i:14850056 original size:13 final size:13
Alignment explanation
Indices: 14850038--14850062 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14850028 ATCCCACCCC
14850038 AAAACAGATACAG
1 AAAACAGATACAG
14850051 AAAACAGATACA
1 AAAACAGATACA
14850063 AAATTCACAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.12, T:0.08
Consensus pattern (13 bp):
AAAACAGATACAG
Found at i:14854528 original size:19 final size:20
Alignment explanation
Indices: 14854498--14854536 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
14854488 GAAAAAGAAA
*
14854498 ATATACTTTTTAATTAATTT
1 ATATACTTTTTAAATAATTT
14854518 ATATA-TTTTTAAATAATTT
1 ATATACTTTTTAAATAATTT
14854537 TTTAATGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (20 bp):
ATATACTTTTTAAATAATTT
Found at i:14855313 original size:40 final size:41
Alignment explanation
Indices: 14855264--14855347 Score: 98
Period size: 41 Copynumber: 2.1 Consensus size: 41
14855254 TATTTTACAT
*
14855264 TAGCGGCGTTTGCAAT-AAAACGCCGCAAAAAACAGAGCAA
1 TAGCAGCGTTTGCAATCAAAACGCCGCAAAAAACAGAGCAA
*** * * *
14855304 TAGCAGCGTTTTTGATCCAAACGCCGCTAAAAACTGAGCAA
1 TAGCAGCGTTTGCAATCAAAACGCCGCAAAAAACAGAGCAA
14855345 TAG
1 TAG
14855348 TGGTGTTTTT
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
40 12 0.33
41 24 0.67
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.18
Consensus pattern (41 bp):
TAGCAGCGTTTGCAATCAAAACGCCGCAAAAAACAGAGCAA
Found at i:14855400 original size:41 final size:40
Alignment explanation
Indices: 14855281--14855413 Score: 151
Period size: 41 Copynumber: 3.3 Consensus size: 40
14855271 GTTTGCAATA
* * * *
14855281 AAACGCCGCAAAAAACAGAGCAATAGCAGCGTTTTTGATCC
1 AAACGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTG-GCC
* *
14855322 AAACGCCGCTAAAAACTGAGCAATAGTGGTGTTTTTGGCCC
1 AAACGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTGG-CC
* **
14855363 AAACGCCGCTAAAAACTGTA-CAATAGCGGCGCTTTTGGAA
1 AAACGCCGCTAAAAACTG-AGCAATAGCGGCGTTTTTGGCC
14855403 AAACGCCGCTA
1 AAACGCCGCTA
14855414 TAGGTCGAGG
Statistics
Matches: 79, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
40 11 0.14
41 67 0.85
42 1 0.01
ACGTcount: A:0.35, C:0.24, G:0.22, T:0.20
Consensus pattern (40 bp):
AAACGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTGGCC
Found at i:14855436 original size:41 final size:41
Alignment explanation
Indices: 14855386--14855616 Score: 374
Period size: 41 Copynumber: 5.6 Consensus size: 41
14855376 AACTGTACAA
14855386 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
* * *
14855427 TAGCAGCGCTTCTGGAAAAACGCTGCTATAGGTCGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
*
14855468 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCAAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
*
14855509 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGG-CTGATGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTC-GAGGTTT
* * *
14855550 TAGCGGCGCTTATGGAAAAACGCCGCTATAGGCCGATGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
14855591 TAGCGGCGCTTTTGGAAAAACGCCGC
1 TAGCGGCGCTTTTGGAAAAACGCCGC
14855617 AAAAAAGTAA
Statistics
Matches: 177, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
40 1 0.01
41 175 0.99
42 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (41 bp):
TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
Found at i:14855951 original size:18 final size:18
Alignment explanation
Indices: 14855922--14855972 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
14855912 TTGTCCCTTG
14855922 TTATATATATATATTAAAA
1 TTATA-ATATATATTAAAA
* *
14855941 TTCTAATATATATTAAGA
1 TTATAATATATATTAAAA
14855959 TTATAATATATATT
1 TTATAATATATATT
14855973 TAGGGTGTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
18 25 0.86
19 4 0.14
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (18 bp):
TTATAATATATATTAAAA
Found at i:14856391 original size:15 final size:15
Alignment explanation
Indices: 14856371--14856402 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
14856361 TTTAATGTAG
*
14856371 AAGATAAATGTATAT
1 AAGATAAATATATAT
14856386 AAGATAAATATATAT
1 AAGATAAATATATAT
14856401 AA
1 AA
14856403 ATTATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.31
Consensus pattern (15 bp):
AAGATAAATATATAT
Found at i:14856441 original size:24 final size:23
Alignment explanation
Indices: 14856374--14856441 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 23
14856364 AATGTAGAAG
* *
14856374 ATAAATGTATATAAGATAAATATAT
1 ATAAAT-TATATATGA-AAAAATAT
* *
14856399 ATAAATTATTATTTTAAAAAATAT
1 ATAAATTA-TATATGAAAAAATAT
14856423 ATAAATATATATATGAAAA
1 ATAAAT-TATATATGAAAA
14856442 GTGGTTTAGT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
24 23 0.66
25 12 0.34
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.38
Consensus pattern (23 bp):
ATAAATTATATATGAAAAAATAT
Found at i:14861271 original size:24 final size:24
Alignment explanation
Indices: 14861244--14861311 Score: 111
Period size: 24 Copynumber: 2.8 Consensus size: 24
14861234 ATTATTATTG
*
14861244 AAATATTCTCGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAC
14861268 AAATATTATTC-TCCGTTTTATCAC
1 AAATATTA-TCGTCCGTTTTATCAC
14861292 AAATATTATCGTCCGTTTTA
1 AAATATTATCGTCCGTTTTA
14861312 CCATTTAAGT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
23 2 0.05
24 37 0.90
25 2 0.05
ACGTcount: A:0.28, C:0.21, G:0.07, T:0.44
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAC
Found at i:14861532 original size:15 final size:15
Alignment explanation
Indices: 14861488--14861543 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
14861478 AACGACATGT
14861488 ATATTATTTAATTAAA
1 ATATTATTTAATT-AA
14861504 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
14861517 ATATTATTTAATTAA
1 ATATTATTTAATTAA
14861532 ATATTATTTAAT
1 ATATTATTTAAT
14861544 CCCGCTACTT
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
12 3 0.08
13 7 0.19
14 2 0.06
15 16 0.44
16 5 0.14
17 3 0.08
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:14861660 original size:9 final size:9
Alignment explanation
Indices: 14861648--14861802 Score: 73
Period size: 9 Copynumber: 16.6 Consensus size: 9
14861638 TATTTGATAT
*
14861648 CATAATTTA
1 CATAACTTA
14861657 CATAACTTA
1 CATAACTTA
* *
14861666 TATAACATA
1 CATAACTTA
*
14861675 TATAACTTA
1 CATAACTTA
14861684 CATAACTTA
1 CATAACTTA
14861693 CATAATACTTA
1 CAT-A-ACTTA
* *
14861704 AATATATTTTATA
1 CATA-A--CT-TA
*
14861717 TCATAATTTA
1 -CATAACTTA
14861727 CATAACTTA
1 CATAACTTA
14861736 CATAACTTA
1 CATAACTTA
* *
14861745 GATAA-ATA
1 CATAACTTA
* *
14861753 TATAATTTA
1 CATAACTTA
*
14861762 CATAA-ATA
1 CATAACTTA
* *
14861770 TAT-ATTATA
1 CATAACT-TA
*
14861779 TCATAAATTA
1 -CATAACTTA
14861789 CATAACTTA
1 CATAACTTA
14861798 CATAA
1 CATAA
14861803 TACTTAAATA
Statistics
Matches: 115, Mismatches: 20, Indels: 22
0.73 0.13 0.14
Matches are distributed among these distances:
7 1 0.01
8 10 0.09
9 76 0.66
10 10 0.09
11 11 0.10
12 1 0.01
13 3 0.03
14 3 0.03
ACGTcount: A:0.48, C:0.12, G:0.01, T:0.39
Consensus pattern (9 bp):
CATAACTTA
Found at i:14861679 original size:27 final size:28
Alignment explanation
Indices: 14861644--14861697 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 28
14861634 AATATATTTG
* *
14861644 ATATCATAATTTACATAACTTATATAAC
1 ATATCATAACTTACATAACTTACATAAC
14861672 ATAT-ATAACTTACATAACTTACATAA
1 ATATCATAACTTACATAACTTACATAA
14861698 TACTTAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 20 0.83
28 4 0.17
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.37
Consensus pattern (28 bp):
ATATCATAACTTACATAACTTACATAAC
Found at i:14861706 original size:70 final size:67
Alignment explanation
Indices: 14861617--14861802 Score: 229
Period size: 70 Copynumber: 2.8 Consensus size: 67
14861607 TGAAATAAAA
* * *
14861617 AACTTACATAATACATAAATATATTTGATATCATAATTTACATAACTTATATAACATATATAACT
1 AACTTACATAATAC-TAAATATATTT-ATATCATAATTTACATAACTTACATAACATAGATAA-A
14861682 TACAT
63 TACAT
*
14861687 AACTTACATAATACTTAAATATATTTTATATCATAATTTACATAACTTACATAACTTAGATAAAT
1 AACTTACATAATAC-TAAATATA-TTTATATCATAATTTACATAACTTACATAACATAGATAAAT
*
14861752 ATAT
64 ACAT
* *
14861756 AATTTACATAA-A-T--ATATA-TTATATCATAAATTACATAACTTACATAA
1 AACTTACATAATACTAAATATATTTATATCATAATTTACATAACTTACATAA
14861803 TACTTAAATA
Statistics
Matches: 107, Mismatches: 8, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
62 28 0.26
64 5 0.05
66 1 0.01
68 1 0.01
69 14 0.13
70 55 0.51
71 3 0.03
ACGTcount: A:0.48, C:0.12, G:0.01, T:0.39
Consensus pattern (67 bp):
AACTTACATAATACTAAATATATTTATATCATAATTTACATAACTTACATAACATAGATAAATAC
AT
Found at i:14867439 original size:33 final size:33
Alignment explanation
Indices: 14867397--14867478 Score: 96
Period size: 31 Copynumber: 2.5 Consensus size: 33
14867387 TTAGAATTAA
* *
14867397 TGTTTTTGGTTGTATTTTTTATGCTAAATTTGC
1 TGTTTTTGGTTGCATTTTTTATACTAAATTTGC
* *
14867430 TGTTTTTGGTTGCA--TTTTATACTATATTTGT
1 TGTTTTTGGTTGCATTTTTTATACTAAATTTGC
* *
14867461 TGTATTTGGTTGGATTTT
1 TGTTTTTGGTTGCATTTT
14867479 AATGCAGGAA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
31 26 0.63
33 15 0.37
ACGTcount: A:0.15, C:0.05, G:0.20, T:0.61
Consensus pattern (33 bp):
TGTTTTTGGTTGCATTTTTTATACTAAATTTGC
Found at i:14868148 original size:12 final size:12
Alignment explanation
Indices: 14868131--14868163 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
14868121 CGGCCCGCCC
14868131 ATATTAATTTTT
1 ATATTAATTTTT
14868143 ATATT-ATTTTT
1 ATATTAATTTTT
14868154 ATA-TAATTTT
1 ATATTAATTTT
14868164 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:14868373 original size:22 final size:22
Alignment explanation
Indices: 14868348--14868390 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
14868338 TATCCAAACA
14868348 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* **
14868370 ATAATAGTAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
14868391 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:14868394 original size:11 final size:11
Alignment explanation
Indices: 14868355--14868395 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
14868345 ACAATAACAA
14868355 CAAAATAGTAG
1 CAAAATAGTAG
* *
14868366 CAACATAATAG
1 CAAAATAGTAG
*
14868377 TAAAATAGTAG
1 CAAAATAGTAG
14868388 CAAAATAG
1 CAAAATAG
14868396 GGAGAAAATA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.20
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:14872079 original size:15 final size:15
Alignment explanation
Indices: 14872061--14872093 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
14872051 AAGGCTTGGG
*
14872061 AAAGTAATCAGGCAT
1 AAAGTAATAAGGCAT
14872076 AAAGTAATAAGGCAT
1 AAAGTAATAAGGCAT
14872091 AAA
1 AAA
14872094 CATCCTCGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.55, C:0.09, G:0.18, T:0.18
Consensus pattern (15 bp):
AAAGTAATAAGGCAT
Found at i:14872405 original size:24 final size:23
Alignment explanation
Indices: 14872378--14872439 Score: 79
Period size: 24 Copynumber: 2.6 Consensus size: 23
14872368 AAAAAATAAA
14872378 TCTATACTAAATATATAATACTAC
1 TCTATAC-AAATATATAATACTAC
*
14872402 TCTAATGCAAATATATAATACTAC
1 TCT-ATACAAATATATAATACTAC
*
14872426 TCTAATGCAAATAT
1 TCT-ATACAAATAT
14872440 TAAAATAATA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
24 33 0.92
25 3 0.08
ACGTcount: A:0.45, C:0.16, G:0.03, T:0.35
Consensus pattern (23 bp):
TCTATACAAATATATAATACTAC
Found at i:14872415 original size:22 final size:24
Alignment explanation
Indices: 14872386--14872439 Score: 108
Period size: 24 Copynumber: 2.2 Consensus size: 24
14872376 AATCTATACT
14872386 AAATATATAATACTACTCTAATGC
1 AAATATATAATACTACTCTAATGC
14872410 AAATATATAATACTACTCTAATGC
1 AAATATATAATACTACTCTAATGC
14872434 AAATAT
1 AAATAT
14872440 TAAAATAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.48, C:0.15, G:0.04, T:0.33
Consensus pattern (24 bp):
AAATATATAATACTACTCTAATGC
Found at i:14872550 original size:25 final size:25
Alignment explanation
Indices: 14872505--14872553 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
14872495 TATTTTTAAA
* *
14872505 TTTTAAAATAATATAATATAATATT
1 TTTTAAAATAATAAAAAATAATATT
14872530 TTTTAAAA-AATTAAAAAATAATAT
1 TTTTAAAATAA-TAAAAAATAATAT
14872554 ATGCGAGTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 2 0.10
25 19 0.90
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (25 bp):
TTTTAAAATAATAAAAAATAATATT
Found at i:14872707 original size:21 final size:21
Alignment explanation
Indices: 14872681--14872720 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
14872671 CATCCTTAAA
14872681 CCTGACCCAAACTAGGTCTAG
1 CCTGACCCAAACTAGGTCTAG
14872702 CCTGACCCAAACTAGGTCT
1 CCTGACCCAAACTAGGTCT
14872721 GACCCATGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.28, C:0.35, G:0.17, T:0.20
Consensus pattern (21 bp):
CCTGACCCAAACTAGGTCTAG
Found at i:14875764 original size:150 final size:150
Alignment explanation
Indices: 14875599--14875901 Score: 597
Period size: 150 Copynumber: 2.0 Consensus size: 150
14875589 TTAATCTTAT
14875599 TAGCTTTCAGCCATGACCGCTACTCGCTTTTAGGAATACGTAAAAATAATATTTAATCCCCGTTT
1 TAGCTTTCAGCCATGACCGCTACTCGCTTTTAGGAATACGTAAAAATAATATTTAATCCCCGTTT
*
14875664 CATCATCTTCTATTATATCTAAATCCAAGGTTTTTTTTTTTTGTAAAATAATCAAAAGGATCCAA
66 CATCATCTTCTATTATATCTAAATCCAAGGTTTTTTTTTTCTGTAAAATAATCAAAAGGATCCAA
14875729 AAGTTATCGGAAACCCTACC
131 AAGTTATCGGAAACCCTACC
14875749 TAGCTTTCAGCCATGACCGCTACTCGCTTTTAGGAATACGTAAAAATAATATTTAATCCCCGTTT
1 TAGCTTTCAGCCATGACCGCTACTCGCTTTTAGGAATACGTAAAAATAATATTTAATCCCCGTTT
14875814 CATCATCTTCTATTATATCTAAATCCAAGGTTTTTTTTTTCTGTAAAATAATCAAAAGGATCCAA
66 CATCATCTTCTATTATATCTAAATCCAAGGTTTTTTTTTTCTGTAAAATAATCAAAAGGATCCAA
14875879 AAGTTATCGGAAACCCTACC
131 AAGTTATCGGAAACCCTACC
14875899 TAG
1 TAG
14875902 AGTTGGATGT
Statistics
Matches: 152, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 152 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.35
Consensus pattern (150 bp):
TAGCTTTCAGCCATGACCGCTACTCGCTTTTAGGAATACGTAAAAATAATATTTAATCCCCGTTT
CATCATCTTCTATTATATCTAAATCCAAGGTTTTTTTTTTCTGTAAAATAATCAAAAGGATCCAA
AAGTTATCGGAAACCCTACC
Found at i:14877739 original size:53 final size:53
Alignment explanation
Indices: 14877659--14877764 Score: 194
Period size: 53 Copynumber: 2.0 Consensus size: 53
14877649 TTGCAAGAAG
14877659 ATAGGGCATGTTGAAAGAGTCTGCAAAAGTAAACCAAGACAGAACCAATCACA
1 ATAGGGCATGTTGAAAGAGTCTGCAAAAGTAAACCAAGACAGAACCAATCACA
* *
14877712 ATAGGGCATGTTGAAAGAGTCTGCAAAAGTAGACCAATACAGAACCAATCACA
1 ATAGGGCATGTTGAAAGAGTCTGCAAAAGTAAACCAAGACAGAACCAATCACA
14877765 GCAGCAAAAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.44, C:0.19, G:0.21, T:0.16
Consensus pattern (53 bp):
ATAGGGCATGTTGAAAGAGTCTGCAAAAGTAAACCAAGACAGAACCAATCACA
Found at i:14879884 original size:39 final size:39
Alignment explanation
Indices: 14879841--14880003 Score: 281
Period size: 39 Copynumber: 4.2 Consensus size: 39
14879831 TGAAGTCTAG
* *
14879841 CTGAAGCACATAAGTGCTAAACGGAAGCCCGAAGGCTAA
1 CTGAAGCACACAAGTGCTAAACGGAAGCCCAAAGGCTAA
*
14879880 CTGAAGCACACAGGTGCTAAACGGAAGCCCAAAGGCTAA
1 CTGAAGCACACAAGTGCTAAACGGAAGCCCAAAGGCTAA
*
14879919 CTAAAGCACACAAGTGCTAAACGGAAGCCCAAAGGCTAA
1 CTGAAGCACACAAGTGCTAAACGGAAGCCCAAAGGCTAA
*
14879958 CTAAAGCACACAAGTGCTAAACGGAAGCCCAAAGGCTAA
1 CTGAAGCACACAAGTGCTAAACGGAAGCCCAAAGGCTAA
14879997 CTGAAGC
1 CTGAAGC
14880004 TCATCAGAGC
Statistics
Matches: 118, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 118 1.00
ACGTcount: A:0.40, C:0.25, G:0.23, T:0.11
Consensus pattern (39 bp):
CTGAAGCACACAAGTGCTAAACGGAAGCCCAAAGGCTAA
Found at i:14881087 original size:29 final size:29
Alignment explanation
Indices: 14881045--14881102 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
14881035 CAAACTAGAT
14881045 GCAATAACCTTTAATTTCATATTTTTTTC
1 GCAATAACCTTTAATTTCATATTTTTTTC
*
14881074 GCAATAACCTTTAATTTCATGTTTTTTTC
1 GCAATAACCTTTAATTTCATATTTTTTTC
14881103 ATCTTCTAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.26, C:0.17, G:0.05, T:0.52
Consensus pattern (29 bp):
GCAATAACCTTTAATTTCATATTTTTTTC
Found at i:14883993 original size:49 final size:49
Alignment explanation
Indices: 14883847--14883994 Score: 146
Period size: 49 Copynumber: 3.0 Consensus size: 49
14883837 ACCATGCAGC
14883847 TCGAGCCATGCAAAGGTTGTTGAACCAAGTGCTGCTGATGAAATTCAGT
1 TCGAGCCATGCAAAGGTTGTTGAACCAAGTGCTGCTGATGAAATTCAGT
* * ** * * *
14883896 TC-A-TCTTGTTC-TTGTTTAGTTGATGA-C-A-TGCAGCTCATGAAATTCAGT
1 TCGAGCCATG--CAAAGGTT-GTTGA--ACCAAGTGCTGCTGATGAAATTCAGT
14883944 TCGAGCCATGCAAAGGTTGTTGAACCAAGTGCTGCTGATGAAATTCAGT
1 TCGAGCCATGCAAAGGTTGTTGAACCAAGTGCTGCTGATGAAATTCAGT
14883993 TC
1 TC
14883995 ATTTTGTTCT
Statistics
Matches: 74, Mismatches: 14, Indels: 22
0.67 0.13 0.20
Matches are distributed among these distances:
46 1 0.01
47 4 0.05
48 31 0.42
49 33 0.45
50 4 0.05
51 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (49 bp):
TCGAGCCATGCAAAGGTTGTTGAACCAAGTGCTGCTGATGAAATTCAGT
Found at i:14884013 original size:97 final size:97
Alignment explanation
Indices: 14883847--14884022 Score: 343
Period size: 97 Copynumber: 1.8 Consensus size: 97
14883837 ACCATGCAGC
14883847 TCGAGCCATGCAAAGGTTGTTGAACCAAGTGCTGCTGATGAAATTCAGTTCATCTTGTTCTTGTT
1 TCGAGCCATGCAAAGGTTGTTGAACCAAGTGCTGCTGATGAAATTCAGTTCATCTTGTTCTTGTT
14883912 TAGTTGATGACATGCAGCTCATGAAATTCAGT
66 TAGTTGATGACATGCAGCTCATGAAATTCAGT
*
14883944 TCGAGCCATGCAAAGGTTGTTGAACCAAGTGCTGCTGATGAAATTCAGTTCATTTTGTTCTTGTT
1 TCGAGCCATGCAAAGGTTGTTGAACCAAGTGCTGCTGATGAAATTCAGTTCATCTTGTTCTTGTT
14884009 TAGTTGATGACATG
66 TAGTTGATGACATG
14884023 TAATTTAGTT
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
97 78 1.00
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35
Consensus pattern (97 bp):
TCGAGCCATGCAAAGGTTGTTGAACCAAGTGCTGCTGATGAAATTCAGTTCATCTTGTTCTTGTT
TAGTTGATGACATGCAGCTCATGAAATTCAGT
Found at i:14884015 original size:49 final size:49
Alignment explanation
Indices: 14883865--14884015 Score: 143
Period size: 49 Copynumber: 3.1 Consensus size: 49
14883855 TGCAAAGGTT
14883865 GTTGAACCAAGTGCTGCTGATGAAATTCAGTTCATCTTGTTCTTGTTTA
1 GTTGAACCAAGTGCTGCTGATGAAATTCAGTTCATCTTGTTCTTGTTTA
* * * * ** *
14883914 GTTGATGA-C-A-TGCAGCTCATGAAATTCAGTTCGAGCCATG--CAAAGGTT-
1 GTTGA--ACCAAGTGCTGCTGATGAAATTCAGTTC-A-TCTTGTTC-TTGTTTA
*
14883962 GTTGAACCAAGTGCTGCTGATGAAATTCAGTTCATTTTGTTCTTGTTTA
1 GTTGAACCAAGTGCTGCTGATGAAATTCAGTTCATCTTGTTCTTGTTTA
14884011 GTTGA
1 GTTGA
14884016 TGACATGTAA
Statistics
Matches: 76, Mismatches: 15, Indels: 22
0.67 0.13 0.19
Matches are distributed among these distances:
46 1 0.01
47 3 0.04
48 31 0.41
49 36 0.47
50 4 0.05
51 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.37
Consensus pattern (49 bp):
GTTGAACCAAGTGCTGCTGATGAAATTCAGTTCATCTTGTTCTTGTTTA
Found at i:14886043 original size:13 final size:13
Alignment explanation
Indices: 14886025--14886049 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14886015 TTTAGCCATT
14886025 TTTTTATTTTTTA
1 TTTTTATTTTTTA
14886038 TTTTTATTTTTT
1 TTTTTATTTTTT
14886050 TTACTTTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTATTTTTTA
Found at i:14891848 original size:7 final size:6
Alignment explanation
Indices: 14891813--14891870 Score: 50
Period size: 6 Copynumber: 10.0 Consensus size: 6
14891803 TTTTAGTCCA
* *
14891813 TTATTT TTA-TT TT-CTT TTATTT TCATTT TTAGTTT TTA-TT TTATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTA-TTT TTATTT TTATTT
* *
14891859 TTCTGT TTATTT
1 TTATTT TTATTT
14891871 GTACTTTCTT
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
5 13 0.32
6 22 0.54
7 6 0.15
ACGTcount: A:0.14, C:0.05, G:0.03, T:0.78
Consensus pattern (6 bp):
TTATTT
Found at i:14891867 original size:24 final size:24
Alignment explanation
Indices: 14891822--14891867 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
14891812 ATTATTTTTA
* *
14891822 TTTTCTTTTATTTTCATTTTTAGT
1 TTTTATTTTATTTTCATGTTTAGT
14891846 TTTTATTTTATTTTTC-TGTTTA
1 TTTTATTTTA-TTTTCATGTTTA
14891868 TTTGTACTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 14 0.74
25 5 0.26
ACGTcount: A:0.13, C:0.07, G:0.04, T:0.76
Consensus pattern (24 bp):
TTTTATTTTATTTTCATGTTTAGT
Found at i:14902019 original size:17 final size:18
Alignment explanation
Indices: 14901987--14902022 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
14901977 TATGTGGTCT
14901987 GCCCGTGTAGGCCCACAC
1 GCCCGTGTAGGCCCACAC
14902005 GCCCGTGTA-GCCCACAC
1 GCCCGTGTAGGCCCACAC
14902022 G
1 G
14902023 GCCTAATTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.17, C:0.44, G:0.28, T:0.11
Consensus pattern (18 bp):
GCCCGTGTAGGCCCACAC
Done.