Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 49 of 276
Found at i:15246560 original size:10 final size:10
Alignment explanation
Indices: 15246532--15246713 Score: 80
Period size: 10 Copynumber: 18.8 Consensus size: 10
15246522 GCCCCAATTT
*
15246532 TTATTAAAAA
1 TTATAAAAAA
*
15246542 TTAGAAAAAAA
1 TTA-TAAAAAA
15246553 TTATAAAAAA
1 TTATAAAAAA
**
15246563 TTA-AAATCA
1 TTATAAAAAA
15246572 --AT-AAAAA
1 TTATAAAAAA
* *
15246579 CTAT-AAATA
1 TTATAAAAAA
* **
15246588 TTATTAAATT
1 TTATAAAAAA
15246598 TTAATAAAAAAA
1 TT-AT-AAAAAA
*
15246610 TTATTAAAAA
1 TTATAAAAAA
15246620 -TAT-AAAAA
1 TTATAAAAAA
*
15246628 TTGTAAAAAA
1 TTATAAAAAA
15246638 -TATAAAAAA
1 TTATAAAAAA
* **
15246647 TTGTAAAATT
1 TTATAAAAAA
15246657 TTAT-AAAAA
1 TTATAAAAAA
*
15246666 TCATAAAAATA
1 TTATAAAAA-A
*
15246677 TTATAAAATA
1 TTATAAAAAA
*
15246687 -TAT-AGAAA
1 TTATAAAAAA
*
15246695 TATAAAAAAAA
1 T-TATAAAAAA
15246706 TTATAAAA
1 TTATAAAA
15246714 TTATATTAAG
Statistics
Matches: 127, Mismatches: 30, Indels: 30
0.68 0.16 0.16
Matches are distributed among these distances:
7 4 0.03
8 8 0.06
9 35 0.28
10 50 0.39
11 25 0.20
12 5 0.04
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (10 bp):
TTATAAAAAA
Found at i:15246624 original size:20 final size:20
Alignment explanation
Indices: 15246601--15246718 Score: 70
Period size: 19 Copynumber: 6.2 Consensus size: 20
15246591 TTAAATTTTA
15246601 ATAAAAAAATTATTAAAAAT
1 ATAAAAAAATTATTAAAAAT
* *
15246621 AT--AAAAATTGTAAAAAAT
1 ATAAAAAAATTATTAAAAAT
* *
15246639 AT-AAAAAATT-GTAAAATT
1 ATAAAAAAATTATTAAAAAT
* * *
15246657 TTATAAAAATCA-TAAAAAT
1 ATAAAAAAATTATTAAAAAT
* * *
15246676 ATTATAAAA-TATATAGAAAT
1 ATAAAAAAATTAT-TAAAAAT
*
15246696 ATAAAAAAAATTA-TAAAATT
1 AT-AAAAAAATTATTAAAAAT
15246716 ATA
1 ATA
15246719 TTAAGTCTTA
Statistics
Matches: 72, Mismatches: 19, Indels: 15
0.68 0.18 0.14
Matches are distributed among these distances:
18 23 0.32
19 25 0.35
20 17 0.24
21 5 0.07
22 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.31
Consensus pattern (20 bp):
ATAAAAAAATTATTAAAAAT
Found at i:15246635 original size:58 final size:57
Alignment explanation
Indices: 15246546--15246715 Score: 143
Period size: 59 Copynumber: 2.9 Consensus size: 57
15246536 TAAAAATTAG
* * * *
15246546 AAAAAAATTATAAAAAATTAAAATCAATAAAAACTAT-AAATATTATTAAATTTTAAT
1 AAAAAAATTATAAAAAATAAAAATCAATAAAAAATATAAAAAATTATAAAATTTT-AT
** *
15246603 AAAAAAATTATTAAAAATATAAAAAT-TGTAAAAAATATAAAAAATTGTAAAATTTTAT
1 AAAAAAATTA-TAAAAA-ATAAAAATCAATAAAAAATATAAAAAATTATAAAATTTTAT
* * *
15246661 --AAAAATCATAAAAATATTATAAAAT-ATATAGAAATATAAAAAAAATTATAAAATT
1 AAAAAAATTATAAAAA-A-TA-AAAATCA-ATA-AAAAATATAAAAAATTATAAAATT
15246716 ATATTAAGTC
Statistics
Matches: 93, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
55 8 0.09
56 9 0.10
57 15 0.16
58 19 0.20
59 42 0.45
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (57 bp):
AAAAAAATTATAAAAAATAAAAATCAATAAAAAATATAAAAAATTATAAAATTTTAT
Found at i:15246731 original size:29 final size:30
Alignment explanation
Indices: 15246641--15246739 Score: 103
Period size: 29 Copynumber: 3.4 Consensus size: 30
15246631 TAAAAAATAT
* * *
15246641 AAAAAATTGTAAAATTTTATAAAAATCATA
1 AAAAAATTATAAAATTATATAAAAATCTTA
* * * *
15246671 AAAATATTATAAAA-TATATAGAAATATAA
1 AAAAAATTATAAAATTATATAAAAATCTTA
* *
15246700 AAAAAATTATAAAATTATAT-TAAGTCTTA
1 AAAAAATTATAAAATTATATAAAAATCTTA
15246729 AAAAAATTATA
1 AAAAAATTATA
15246740 CAAAAATGTA
Statistics
Matches: 56, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
29 39 0.70
30 17 0.30
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (30 bp):
AAAAAATTATAAAATTATATAAAAATCTTA
Found at i:15247000 original size:10 final size:10
Alignment explanation
Indices: 15246985--15247041 Score: 55
Period size: 10 Copynumber: 5.9 Consensus size: 10
15246975 AAAAAAATTC
15246985 TAATTTTTAA
1 TAATTTTTAA
*
15246995 TAATTTTTTA
1 TAATTTTTAA
*
15247005 -AATTTTTTA
1 TAATTTTTAA
*
15247014 -AATTTTTAT
1 TAATTTTTAA
**
15247023 TAAAATTTAA
1 TAATTTTTAA
15247033 TAATTTTTA
1 TAATTTTTA
15247042 TAAAATTTAT
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
9 16 0.42
10 22 0.58
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (10 bp):
TAATTTTTAA
Found at i:15247001 original size:38 final size:37
Alignment explanation
Indices: 15246919--15247004 Score: 93
Period size: 38 Copynumber: 2.3 Consensus size: 37
15246909 TAGGAGTCGT
* * * *
15246919 TAATTTTTTATGATTTTTATAAAATTTTACAATTTTTT
1 TAATTTTTTACGATTTTTAAAAAATTCTA-AATTTTTA
*
15246957 TTATTTTTTACGATTTTTAAAAAAATTCT-AATTTTTAA
1 TAATTTTTTACGATTTTT-AAAAAATTCTAAATTTTT-A
15246995 TAATTTTTTA
1 TAATTTTTTA
15247005 AATTTTTTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
37 7 0.17
38 25 0.62
39 8 0.20
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.60
Consensus pattern (37 bp):
TAATTTTTTACGATTTTTAAAAAATTCTAAATTTTTA
Found at i:15247021 original size:8 final size:9
Alignment explanation
Indices: 15246986--15247020 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
15246976 AAAAAATTCT
*
15246986 AATTTTTAA
1 AATTTTTTA
15246995 TAATTTTTTA
1 -AATTTTTTA
15247005 AATTTTTTA
1 AATTTTTTA
15247014 AATTTTT
1 AATTTTT
15247021 ATTAAAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 16 0.67
10 8 0.33
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (9 bp):
AATTTTTTA
Found at i:15247046 original size:19 final size:19
Alignment explanation
Indices: 15246990--15247079 Score: 78
Period size: 19 Copynumber: 4.7 Consensus size: 19
15246980 AATTCTAATT
15246990 TTTAATAATTTTT-T-AAA
1 TTTAATAATTTTTATAAAA
**
15247007 TTTTTTAAATTTTTATTAAAA
1 TTTAAT-AATTTTTA-TAAAA
15247028 TTTAATAATTTTTATAAAA
1 TTTAATAATTTTTATAAAA
* *
15247047 TTT-ATTATTTGTTATAAAT
1 TTTAATAATTT-TTATAAAA
**
15247066 TTTTCTAATTTTTA
1 TTTAATAATTTTTA
15247080 ATATTAGCAT
Statistics
Matches: 59, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
17 4 0.07
18 13 0.22
19 21 0.36
20 14 0.24
21 7 0.12
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.61
Consensus pattern (19 bp):
TTTAATAATTTTTATAAAA
Found at i:15247079 original size:29 final size:28
Alignment explanation
Indices: 15246982--15247084 Score: 77
Period size: 29 Copynumber: 3.6 Consensus size: 28
15246972 TTTAAAAAAA
*
15246982 TTCTAATTTTTAATAATTTTT-TAAATTT
1 TTCTAATTTTT-ATTATTTTTATAAATTT
**
15247010 TT-TAAATTTTTATTAAAATTTA-ATAATTT
1 TTCT-AATTTTTATT-ATTTTTATA-AATTT
* **
15247039 TTATAAAATTTATTATTTGTTATAAATTT
1 TTCTAATTTTTATTATTT-TTATAAATTT
*
15247068 TTCTAATTTTTAATATT
1 TTCTAATTTTTATTATT
15247085 AGCATGGGCT
Statistics
Matches: 57, Mismatches: 11, Indels: 13
0.70 0.14 0.16
Matches are distributed among these distances:
27 3 0.05
28 16 0.28
29 36 0.63
30 2 0.04
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.61
Consensus pattern (28 bp):
TTCTAATTTTTATTATTTTTATAAATTT
Found at i:15247638 original size:15 final size:15
Alignment explanation
Indices: 15247585--15247639 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 15
15247575 TTTCAACTAA
* *
15247585 ATTTTTATTTTAA-T
1 ATTTTTATATAAATT
* *
15247599 ATTTTTATACAATTT
1 ATTTTTATATAAATT
*
15247614 ATTATTATATAAATT
1 ATTTTTATATAAATT
15247629 ATTTTTATATA
1 ATTTTTATATA
15247640 TTAATAAAAT
Statistics
Matches: 32, Mismatches: 8, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
14 9 0.28
15 23 0.72
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (15 bp):
ATTTTTATATAAATT
Found at i:15249045 original size:4 final size:4
Alignment explanation
Indices: 15249036--15249084 Score: 98
Period size: 4 Copynumber: 12.2 Consensus size: 4
15249026 AAGCTTCTAC
15249036 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
15249084 T
1 T
15249085 TTTCTATTAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 45 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.51
Consensus pattern (4 bp):
TGTA
Found at i:15256481 original size:16 final size:17
Alignment explanation
Indices: 15256462--15256497 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
15256452 CAAACAACTA
15256462 AAAAATAAAAA-AAAAT
1 AAAAATAAAAAGAAAAT
*
15256478 AAAACTAAAAAGAAAAT
1 AAAAATAAAAAGAAAAT
15256495 AAA
1 AAA
15256498 GAAACAGATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.56
17 8 0.44
ACGTcount: A:0.83, C:0.03, G:0.03, T:0.11
Consensus pattern (17 bp):
AAAAATAAAAAGAAAAT
Found at i:15258648 original size:52 final size:52
Alignment explanation
Indices: 15258577--15258774 Score: 309
Period size: 52 Copynumber: 3.9 Consensus size: 52
15258567 ATCAAGTGAC
*
15258577 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
*
15258629 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC------
1 AAAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
*
15258675 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* *
15258727 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGAGACAA
1 AAAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
15258775 AGTGATAAGT
Statistics
Matches: 133, Mismatches: 7, Indels: 12
0.88 0.05 0.08
Matches are distributed among these distances:
46 44 0.33
52 89 0.67
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (52 bp):
AAAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
Found at i:15258682 original size:98 final size:98
Alignment explanation
Indices: 15258563--15258785 Score: 437
Period size: 98 Copynumber: 2.3 Consensus size: 98
15258553 TTTGAGTACT
15258563 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
15258628 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
15258661 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
15258726 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
*
15258759 TCTGATCAAGAGACAAAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
15258786 GCTACACTTA
Statistics
Matches: 124, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
98 124 1.00
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:15258692 original size:46 final size:46
Alignment explanation
Indices: 15258629--15258784 Score: 231
Period size: 46 Copynumber: 3.3 Consensus size: 46
15258619 TGACAAGTGG
15258629 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC
* *
15258675 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC
*
15258721 AAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGAGAC
1 ------AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC
15258773 AAAGTGATAAGT
1 AAAGTGATAAGT
15258785 GGCTACACTT
Statistics
Matches: 99, Mismatches: 5, Indels: 12
0.85 0.04 0.10
Matches are distributed among these distances:
46 56 0.57
52 43 0.43
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (46 bp):
AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC
Found at i:15258798 original size:37 final size:37
Alignment explanation
Indices: 15258748--15258857 Score: 170
Period size: 37 Copynumber: 3.0 Consensus size: 37
15258738 TAATAGCTTC
*
15258748 GGCTATACTTATCTGATCAAGAGACAAAGTGATAAGT
1 GGCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
* *
15258785 GGCTACACTTATCTGATCAAGAAACAAAGTGATAGGT
1 GGCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
*
15258822 GGCTACACTTATCTGATC-AGGGAC-AAGTGATAAGT
1 GGCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
15258857 G
1 G
15258858 ATCATACGTA
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
35 11 0.16
36 4 0.06
37 52 0.78
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.25
Consensus pattern (37 bp):
GGCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
Found at i:15261100 original size:18 final size:18
Alignment explanation
Indices: 15261073--15261116 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
15261063 AAAAACTAGT
15261073 ACAAATAATAAAAATAAAA
1 ACAAA-AATAAAAATAAAA
*
15261092 ATAAAAATAAAAATAAAA
1 ACAAAAATAAAAATAAAA
15261110 ACAAAAA
1 ACAAAAA
15261117 AAATAAGAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.82, C:0.05, G:0.00, T:0.14
Consensus pattern (18 bp):
ACAAAAATAAAAATAAAA
Found at i:15261105 original size:27 final size:27
Alignment explanation
Indices: 15261088--15261164 Score: 84
Period size: 27 Copynumber: 2.8 Consensus size: 27
15261078 TAATAAAAAT
15261088 AAAAATAAAAATAAAAATAAAAACAAA
1 AAAAATAAAAATAAAAATAAAAACAAA
* * *
15261115 AAAAATAAGAATAAGAATAAATACCAAA
1 AAAAATAAAAATAAAAATAAA-AACAAA
*
15261143 AAGAAAGATAAAAT-AAAATAAA
1 AA-AAATA-AAAATAAAAATAAA
15261165 TCAAAATAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
27 19 0.46
28 7 0.17
29 11 0.27
30 4 0.10
ACGTcount: A:0.78, C:0.04, G:0.05, T:0.13
Consensus pattern (27 bp):
AAAAATAAAAATAAAAATAAAAACAAA
Found at i:15261134 original size:6 final size:6
Alignment explanation
Indices: 15261079--15261116 Score: 67
Period size: 6 Copynumber: 6.3 Consensus size: 6
15261069 TAGTACAAAT
*
15261079 AATAAA AATAAA AATAAA AATAAA AATAAA AACAAA AA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AA
15261117 AAATAAGAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.84, C:0.03, G:0.00, T:0.13
Consensus pattern (6 bp):
AATAAA
Found at i:15261161 original size:25 final size:27
Alignment explanation
Indices: 15261079--15261162 Score: 77
Period size: 27 Copynumber: 3.1 Consensus size: 27
15261069 TAGTACAAAT
* *
15261079 AATAAAAATAAAAATAAAAATAAAAATAA
1 AATACAAA-AAAAATAAGAAT-AAAATAA
15261108 AA-ACAAAAAAAATAAGAATAAGAAT-A
1 AATACAAAAAAAATAAGAATAA-AATAA
* *
15261134 AATACCAAAAAGA-AAG-ATAAAATAA
1 AATACAAAAAAAATAAGAATAAAATAA
15261159 AATA
1 AATA
15261163 AATCAAAATA
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
24 3 0.06
25 9 0.19
26 8 0.17
27 22 0.46
28 4 0.08
29 2 0.04
ACGTcount: A:0.77, C:0.04, G:0.05, T:0.14
Consensus pattern (27 bp):
AATACAAAAAAAATAAGAATAAAATAA
Found at i:15262961 original size:31 final size:30
Alignment explanation
Indices: 15262914--15262974 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 30
15262904 TATATTATTA
15262914 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
* *
15262944 TTAATTTTTTTTATTATTTTAGAGGCATTTG
1 TTAA-TTTTGTTATTATTTTAAAGGCATTTG
15262975 CTTGTTAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
30 4 0.14
31 24 0.86
ACGTcount: A:0.25, C:0.03, G:0.13, T:0.59
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGGCATTTG
Found at i:15265395 original size:14 final size:14
Alignment explanation
Indices: 15265376--15265402 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
15265366 GCAAACAAAA
15265376 TAAAAATTAAATTG
1 TAAAAATTAAATTG
15265390 TAAAAATTAAATT
1 TAAAAATTAAATT
15265403 AAAACAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (14 bp):
TAAAAATTAAATTG
Found at i:15270056 original size:56 final size:56
Alignment explanation
Indices: 15269967--15270120 Score: 229
Period size: 56 Copynumber: 2.8 Consensus size: 56
15269957 GGAATGTTAG
* * *
15269967 GATATTATTATGAGATATTATCTTTTAGTAATTTGATTCCTAATGGGATGTTATAA
1 GATATTATTATGAGATATTATCTTTTAGCAATTTGATTCCTAATGAGATATTATAA
* ** *
15270023 GATATTATTATTG-GATATTCTCTCCTAGCAATTTGATTCCTAATGAGATATTATAT
1 GATATTATTA-TGAGATATTATCTTTTAGCAATTTGATTCCTAATGAGATATTATAA
15270079 GATATTATTATGAGATATTATCTTTTAGCAATTTGATTCCTA
1 GATATTATTATGAGATATTATCTTTTAGCAATTTGATTCCTA
15270121 TACATCTCCT
Statistics
Matches: 86, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
55 2 0.02
56 82 0.95
57 2 0.02
ACGTcount: A:0.31, C:0.09, G:0.14, T:0.46
Consensus pattern (56 bp):
GATATTATTATGAGATATTATCTTTTAGCAATTTGATTCCTAATGAGATATTATAA
Found at i:15270259 original size:10 final size:12
Alignment explanation
Indices: 15270233--15270282 Score: 52
Period size: 12 Copynumber: 4.2 Consensus size: 12
15270223 CTATCACATA
15270233 ATATTTAATAAT
1 ATATTTAATAAT
15270245 ATATTTAA-AAT
1 ATATTTAATAAT
*
15270256 -TATTT-TTAAT
1 ATATTTAATAAT
15270266 ATCAGTTTAATAAT
1 AT-A-TTTAATAAT
15270280 ATA
1 ATA
15270283 ATAAAGAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
10 8 0.26
11 4 0.13
12 9 0.29
13 4 0.13
14 6 0.19
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (12 bp):
ATATTTAATAAT
Found at i:15279991 original size:15 final size:15
Alignment explanation
Indices: 15279971--15280022 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
15279961 ACTACAAAAC
15279971 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
15279986 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
15280005 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
15280020 ATT
1 ATT
15280023 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:15280092 original size:13 final size:14
Alignment explanation
Indices: 15280054--15280095 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
15280044 TATGTGAATA
15280054 ATATTATTTAAAATT
1 ATATTA-TTAAAATT
*
15280069 ATAATTTTTAAAATT
1 AT-ATTATTAAAATT
15280084 -TATTATTAAAAT
1 ATATTATTAAAAT
15280096 AAAATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 10 0.42
16 3 0.12
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
ATATTATTAAAATT
Found at i:15280102 original size:33 final size:34
Alignment explanation
Indices: 15280062--15280137 Score: 93
Period size: 33 Copynumber: 2.3 Consensus size: 34
15280052 TAATATTATT
* *
15280062 TAAAATTATAATTTTTAA-AATTTATTATTAAAA
1 TAAAATTATAATATTAAATAATTTATTATTAAAA
* **
15280095 TAAAATTAAAATATTAAATAATTTATTATTTTAA
1 TAAAATTATAATATTAAATAATTTATTATTAAAA
15280129 T-AAATTATA
1 TAAAATTATA
15280138 TTTATTATAT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
33 22 0.61
34 14 0.39
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (34 bp):
TAAAATTATAATATTAAATAATTTATTATTAAAA
Found at i:15280144 original size:34 final size:34
Alignment explanation
Indices: 15280062--15280144 Score: 84
Period size: 34 Copynumber: 2.5 Consensus size: 34
15280052 TAATATTATT
15280062 TAAAATTATAATTT-TT-AAAATTTATTATTAAAA
1 TAAAATTAT-ATTTATTAAAAATTTATTATTAAAA
** **
15280095 TAAAATTA-AAATATTAAATAATTTATTATTTTAA
1 TAAAATTATATTTATTAAA-AATTTATTATTAAAA
15280129 T-AAATTATATTTATTA
1 TAAAATTATATTTATTA
15280145 TATTAATAGT
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
31 2 0.05
32 2 0.05
33 16 0.40
34 20 0.50
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (34 bp):
TAAAATTATATTTATTAAAAATTTATTATTAAAA
Found at i:15280696 original size:31 final size:32
Alignment explanation
Indices: 15280658--15280731 Score: 89
Period size: 31 Copynumber: 2.4 Consensus size: 32
15280648 TTTTATTTGA
* *
15280658 TCAATTTTAGTCCTTATA-TTTTTCGAATTGG
1 TCAATTTTAGTCATTATACTTTTTCAAATTGG
* *
15280689 TCAATTTTAGTCATTGTACTTTTTCAAATTTG
1 TCAATTTTAGTCATTATACTTTTTCAAATTGG
*
15280721 -AAATTTTAGTC
1 TCAATTTTAGTC
15280732 TTGACCCAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
31 26 0.70
32 11 0.30
ACGTcount: A:0.26, C:0.12, G:0.11, T:0.51
Consensus pattern (32 bp):
TCAATTTTAGTCATTATACTTTTTCAAATTGG
Found at i:15284740 original size:232 final size:224
Alignment explanation
Indices: 15284342--15284797 Score: 822
Period size: 232 Copynumber: 2.0 Consensus size: 224
15284332 GGCAAAATGG
15284342 TCAATTGGAAGAGAGAGAAATCTAGAAAGCAATGATGATGTTGGAGATATTTTAGATTAAATAAA
1 TCAATTGGAAGAGAGAGAAATCTAGAAAGCAATGATGATGTTGGAGATATTTTAGATTAAATAAA
*
15284407 TAAATAGTAGTTTATTAATATTTTAATTTAATTTTTAAATGATATTTTATTATTTTATTATTATT
66 TAAATAGTAGTTTATTAATATTTGAATTTAATTTTTAAATGATATTTTATTATTTTATTATTATT
15284472 TTATCTAGTATATATATAAGGAAAGAAAGATGAAGAATCATCATCTTTTTCCTATGCACCCAACG
131 TTATCTAGTATATATATAAGGAAAGAAAGATGAAGAATCATCATCTTTTTCCTATGCACCCAACG
15284537 TATGAAGAGAAAAGGAAGAAAGAAACTTT
196 TATGAAGAGAAAAGGAAGAAAGAAACTTT
15284566 TCAATTGGAAGAGAGAGAAATCTAGAAAGCAATGATGATGTTGGAGATATTTTAGATTAAATAAA
1 TCAATTGGAAGAGAGAGAAATCTAGAAAGCAATGATGATGTTGGAGATATTTTAG-----AT---
*
15284631 TAAATAAATAAATATTAGTTTATTAATATTTGAATTTAATTTTTAAATGATATTTTATTATTTTA
58 TAAATAAATAAATAGTAGTTTATTAATATTTGAATTTAATTTTTAAATGATATTTTATTATTTTA
15284696 TTATTATTTTATCTAGTATATATATAAGGAAAGAAAGATGAAGAATCATCATCTTTTTCCTATGC
123 TTATTATTTTATCTAGTATATATATAAGGAAAGAAAGATGAAGAATCATCATCTTTTTCCTATGC
15284761 ACCCAACGTATGAAGAGAAAAGGAAGAAAGAAACTTT
188 ACCCAACGTATGAAGAGAAAAGGAAGAAAGAAACTTT
15284798 CTTTTCTTTA
Statistics
Matches: 222, Mismatches: 2, Indels: 8
0.96 0.01 0.03
Matches are distributed among these distances:
224 55 0.25
229 2 0.01
232 165 0.74
ACGTcount: A:0.42, C:0.07, G:0.15, T:0.36
Consensus pattern (224 bp):
TCAATTGGAAGAGAGAGAAATCTAGAAAGCAATGATGATGTTGGAGATATTTTAGATTAAATAAA
TAAATAGTAGTTTATTAATATTTGAATTTAATTTTTAAATGATATTTTATTATTTTATTATTATT
TTATCTAGTATATATATAAGGAAAGAAAGATGAAGAATCATCATCTTTTTCCTATGCACCCAACG
TATGAAGAGAAAAGGAAGAAAGAAACTTT
Found at i:15286857 original size:45 final size:45
Alignment explanation
Indices: 15286793--15287057 Score: 426
Period size: 45 Copynumber: 5.9 Consensus size: 45
15286783 GCTATCTGAA
15286793 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCACATGAT
15286838 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCACATGAT
15286883 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCACATGAT
* * *
15286928 ATGAAATGTGTAAGACCATGGTTAAAAGATACCATGGCAACGTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGC-ACATGAT
**
15286974 ATGAAA-GAATAAGACCATGGTTGAAAGATACCATGGCAACATGACT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGC-ACATGA-T
**
15287020 A-GAAATGAATAAGACCATGGTTGAAAGATACCATGGCA
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
15287058 GCGTGACATC
Statistics
Matches: 209, Mismatches: 8, Indels: 6
0.94 0.04 0.03
Matches are distributed among these distances:
45 166 0.79
46 43 0.21
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (45 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCACATGAT
Found at i:15291451 original size:30 final size:30
Alignment explanation
Indices: 15291394--15291451 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
15291384 AATAGTCTTT
**
15291394 ATCTTTATAATTTTTAAAAGATTAAATTAA
1 ATCTTTATAATTTTTAAAAGAACAAATTAA
* **
15291424 ATCTTTATCATTTTTAAGGGAACAAATT
1 ATCTTTATAATTTTTAAAAGAACAAATT
15291452 GTAATTTTAC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.45
Consensus pattern (30 bp):
ATCTTTATAATTTTTAAAAGAACAAATTAA
Found at i:15301948 original size:21 final size:20
Alignment explanation
Indices: 15301924--15301977 Score: 65
Period size: 22 Copynumber: 2.6 Consensus size: 20
15301914 CATAAGTATT
15301924 TAAAATTAAATAAAAGAAAAA
1 TAAAATTAAATAAAA-AAAAA
*
15301945 TAAAATTAAAATTAAAAAATAA
1 TAAAATT-AAA-TAAAAAAAAA
15301967 TAAAA-TAAATA
1 TAAAATTAAATA
15301978 GACTCAAAGG
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
19 2 0.07
20 3 0.10
21 8 0.27
22 12 0.40
23 5 0.17
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.24
Consensus pattern (20 bp):
TAAAATTAAATAAAAAAAAA
Found at i:15303798 original size:24 final size:24
Alignment explanation
Indices: 15303753--15303799 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
15303743 AAGGAAAAGA
*
15303753 AAGAAGAAAAGAGGGGAGAGGAAG
1 AAGAAGAAAAGAAGGGAGAGGAAG
*
15303777 AAGAGGAAAAGAAAGGGA-AGGAA
1 AAGAAGAAAAG-AAGGGAGAGGAA
15303800 AGGGAAAGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 15 0.75
25 5 0.25
ACGTcount: A:0.57, C:0.00, G:0.43, T:0.00
Consensus pattern (24 bp):
AAGAAGAAAAGAAGGGAGAGGAAG
Found at i:15308467 original size:18 final size:18
Alignment explanation
Indices: 15308444--15308483 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
15308434 TATAATTTTA
*
15308444 AAAAATA-TATAATACATC
1 AAAAATACTA-AAAACATC
15308462 AAAAATACTAAAAACATC
1 AAAAATACTAAAAACATC
15308480 AAAA
1 AAAA
15308484 TAAATATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 18 0.90
19 2 0.10
ACGTcount: A:0.68, C:0.12, G:0.00, T:0.20
Consensus pattern (18 bp):
AAAAATACTAAAAACATC
Found at i:15308602 original size:30 final size:30
Alignment explanation
Indices: 15308566--15308628 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
15308556 ATTTAACAAG
15308566 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
*
15308596 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
15308626 CAA
1 CAA
15308629 TAAAATAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.57, C:0.13, G:0.03, T:0.27
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAATAACAAAATTAA
Found at i:15308683 original size:22 final size:22
Alignment explanation
Indices: 15308658--15308700 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
15308648 TATCCAAACA
15308658 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* **
15308680 ATAATAGTAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
15308701 AGTAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:15310904 original size:16 final size:16
Alignment explanation
Indices: 15310855--15310905 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
15310845 GGTTCACCGA
* *
15310855 AATGGAATAGGGTTGT
1 AATGGAATAGAGCTGT
*
15310871 AATGTAATAGAGAC-GT
1 AATGGAATAGAG-CTGT
15310887 AATGGAATAGAGCTGT
1 AATGGAATAGAGCTGT
15310903 AAT
1 AAT
15310906 CAATAATTCA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
15 1 0.03
16 28 0.97
ACGTcount: A:0.39, C:0.04, G:0.29, T:0.27
Consensus pattern (16 bp):
AATGGAATAGAGCTGT
Found at i:15311130 original size:7 final size:6
Alignment explanation
Indices: 15311103--15311128 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
15311093 CATATAATTT
15311103 AATAAA AATAAA AATAAA AATAAA AA
1 AATAAA AATAAA AATAAA AATAAA AA
15311129 ATTTAATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AATAAA
Found at i:15313349 original size:25 final size:25
Alignment explanation
Indices: 15313290--15313376 Score: 79
Period size: 25 Copynumber: 3.5 Consensus size: 25
15313280 GTACATGTAT
* *
15313290 GCTCATACGAGCTGTA-AATGGGAA
1 GCTCATGCGAGCTGAATAATGGGAA
* *
15313314 GCTCCTCCGAGCTGAATAATGGGAA
1 GCTCATGCGAGCTGAATAATGGGAA
* * **
15313339 GCTCATGCGAGTTGAGT-ATCAAGAA
1 GCTCATGCGAGCTGAATAAT-GGGAA
15313364 GCTCATGCGAGCT
1 GCTCATGCGAGCT
15313377 ATGGTGTGTC
Statistics
Matches: 51, Mismatches: 10, Indels: 3
0.80 0.16 0.05
Matches are distributed among these distances:
24 15 0.29
25 36 0.71
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.22
Consensus pattern (25 bp):
GCTCATGCGAGCTGAATAATGGGAA
Found at i:15323845 original size:12 final size:13
Alignment explanation
Indices: 15323827--15323858 Score: 57
Period size: 12 Copynumber: 2.5 Consensus size: 13
15323817 TCGATATCTC
15323827 AATTTCAATTCAT
1 AATTTCAATTCAT
15323840 -ATTTCAATTCAT
1 AATTTCAATTCAT
15323852 AATTTCA
1 AATTTCA
15323859 CTTTCTCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 12 0.67
13 6 0.33
ACGTcount: A:0.38, C:0.16, G:0.00, T:0.47
Consensus pattern (13 bp):
AATTTCAATTCAT
Found at i:15327476 original size:31 final size:28
Alignment explanation
Indices: 15327435--15327502 Score: 73
Period size: 31 Copynumber: 2.3 Consensus size: 28
15327425 TGTTTACCTC
*
15327435 ATAAAAATCTTATAATTTAATTAATTATCAA
1 ATAAAAATCTT-TAATTTAA-TAATAAT-AA
* *
15327466 ATAAACATCTTTTATTTAATAATAATAA
1 ATAAAAATCTTTAATTTAATAATAATAA
15327494 ATAATAAAT
1 ATAA-AAAT
15327503 ATCTATTTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 6 0.19
29 9 0.28
30 7 0.22
31 10 0.31
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (28 bp):
ATAAAAATCTTTAATTTAATAATAATAA
Found at i:15327802 original size:3 final size:3
Alignment explanation
Indices: 15327796--15327829 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
15327786 AATAAGATTA
15327796 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
15327830 CAACAAAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:15328478 original size:13 final size:13
Alignment explanation
Indices: 15328458--15328497 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
15328448 GACTTTCTTG
15328458 TCAATCTCTCA-CT
1 TCAATCTCT-AGCT
*
15328471 TGAATCTCTAGCT
1 TCAATCTCTAGCT
15328484 TCAATCTCTAGCT
1 TCAATCTCTAGCT
15328497 T
1 T
15328498 TATATGCCCG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 1 0.04
13 23 0.96
ACGTcount: A:0.23, C:0.30, G:0.07, T:0.40
Consensus pattern (13 bp):
TCAATCTCTAGCT
Found at i:15330841 original size:25 final size:25
Alignment explanation
Indices: 15330811--15330868 Score: 89
Period size: 25 Copynumber: 2.3 Consensus size: 25
15330801 AATGGGAGCC
*
15330811 CATGCGAGCTAATTATCGAGAAGCT
1 CATGCGAGCTAAGTATCGAGAAGCT
* *
15330836 CATGCGAGCTGAGTATCGGGAAGCT
1 CATGCGAGCTAAGTATCGAGAAGCT
15330861 CATGCGAG
1 CATGCGAG
15330869 TTGTGGCGTG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.28, C:0.21, G:0.31, T:0.21
Consensus pattern (25 bp):
CATGCGAGCTAAGTATCGAGAAGCT
Found at i:15333476 original size:13 final size:13
Alignment explanation
Indices: 15333460--15333484 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15333450 TATTCTGATG
15333460 GTTTTCTTCGATT
1 GTTTTCTTCGATT
15333473 GTTTTCTTCGAT
1 GTTTTCTTCGAT
15333485 CTTCTCTGCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.16, G:0.16, T:0.60
Consensus pattern (13 bp):
GTTTTCTTCGATT
Found at i:15335059 original size:39 final size:39
Alignment explanation
Indices: 15334973--15335150 Score: 177
Period size: 39 Copynumber: 4.6 Consensus size: 39
15334963 ACTTGAAACC
* *
15334973 AATTACCAGCACA-AGCCTGCGGGAATTTAAACCCGG-TAT
1 AATT-CCAGCACATAGCCTGCGGGACTTT-AGCCCGGATAT
* * *
15335012 AATACCAGCTCGA-AGCCTGCGGGACTTTAGCCCGGACAT
1 AATTCCAGCAC-ATAGCCTGCGGGACTTTAGCCCGGATAT
* * *
15335051 ATTTCCAGCACATAGCCTGC-GGACCTTAAGTCCGGATAT
1 AATTCCAGCACATAGCCTGCGGGA-CTTTAGCCCGGATAT
* * *
15335090 AATTCCAGCACATAGCCTGC-GGACCCTAAGTCCGGATAT
1 AATTCCAGCACATAGCCTGCGGGA-CTTTAGCCCGGATAT
15335129 AATTCCAGCACATAGCCTGCGG
1 AATTCCAGCACATAGCCTGCGG
15335151 ACCCTAAGTC
Statistics
Matches: 121, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
38 16 0.13
39 104 0.86
40 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (39 bp):
AATTCCAGCACATAGCCTGCGGGACTTTAGCCCGGATAT
Found at i:15335091 original size:78 final size:78
Alignment explanation
Indices: 15334973--15335168 Score: 220
Period size: 78 Copynumber: 2.5 Consensus size: 78
15334963 ACTTGAAACC
** ** *
15334973 AATTACCAGCACA-AGCCTGCGGGAATTTAAACCCGG-TATAATACCAGCTCGA-AGCCTGCGGG
1 AATT-CCAGCACATAGCCTGC-GGACCTTAAGTCCGGATATAATACCAGCAC-ATAGCCTGC-GG
* *
15335035 A-CTTTAGCCCGGACAT
62 ACCCTAAGCCCGGACAT
* *
15335051 ATTTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACATAGCCTGCGGACCC
1 AATTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAATACCAGCACATAGCCTGCGGACCC
* *
15335116 TAAGTCCGGATAT
66 TAAGCCCGGACAT
*
15335129 AATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATA
1 AATTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATA
15335169 CATCACTGAA
Statistics
Matches: 101, Mismatches: 13, Indels: 8
0.83 0.11 0.07
Matches are distributed among these distances:
77 23 0.23
78 78 0.77
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (78 bp):
AATTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAATACCAGCACATAGCCTGCGGACCC
TAAGCCCGGACAT
Found at i:15335151 original size:39 final size:39
Alignment explanation
Indices: 15335043--15335168 Score: 225
Period size: 39 Copynumber: 3.2 Consensus size: 39
15335033 GGACTTTAGC
* * *
15335043 CCGGACATATTTCCAGCACATAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
15335082 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
15335121 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
15335160 CCGGATATA
1 CCGGATATA
15335169 CATCACTGAA
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 84 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:15343467 original size:22 final size:22
Alignment explanation
Indices: 15343417--15343468 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
15343407 AAGTGCTGAG
15343417 TAATAGGCACCGAAGTGTAAAT
1 TAATAGGCACCGAAGTGTAAAT
* *
15343439 CAGTAGGCACC-ATAGTGTAAAT
1 TAATAGGCACCGA-AGTGTAAAT
15343461 TAATAGGC
1 TAATAGGC
15343469 CTCGTAACGC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 1 0.04
22 24 0.96
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.23
Consensus pattern (22 bp):
TAATAGGCACCGAAGTGTAAAT
Found at i:15348235 original size:14 final size:14
Alignment explanation
Indices: 15348216--15348243 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
15348206 AAAGGACAAA
15348216 AAAATTCTTTTCTT
1 AAAATTCTTTTCTT
15348230 AAAATTCTTTTCTT
1 AAAATTCTTTTCTT
15348244 GTTGTTTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57
Consensus pattern (14 bp):
AAAATTCTTTTCTT
Found at i:15348469 original size:18 final size:18
Alignment explanation
Indices: 15348448--15348487 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
15348438 GAAATATTTA
*
15348448 TTTTGATGT-TTTTAGTAT
1 TTTTGATGTATTATA-TAT
15348466 TTTTGATGTATTATATAT
1 TTTTGATGTATTATATAT
15348484 TTTT
1 TTTT
15348488 TTAAATTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.20, C:0.00, G:0.12, T:0.68
Consensus pattern (18 bp):
TTTTGATGTATTATATAT
Found at i:15349247 original size:23 final size:22
Alignment explanation
Indices: 15349187--15349247 Score: 59
Period size: 23 Copynumber: 2.7 Consensus size: 22
15349177 TAATTATTAA
* * *
15349187 ATTATATATTTTATTAAATTAT
1 ATTAAATAATTTATTAAAATAT
*
15349209 ATTTAATAATTATATTAAAATAT
1 ATTAAATAATT-TATTAAAATAT
*
15349232 GATTAAATTATTTATT
1 -ATTAAATAATTTATT
15349248 TTTATTTTTA
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
22 8 0.26
23 14 0.45
24 9 0.29
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (22 bp):
ATTAAATAATTTATTAAAATAT
Found at i:15349478 original size:16 final size:16
Alignment explanation
Indices: 15349457--15349507 Score: 75
Period size: 16 Copynumber: 3.2 Consensus size: 16
15349447 TGAATTTTTT
15349457 ATTACAACTCTATTCC
1 ATTACAACTCTATTCC
* *
15349473 ATTACATCTCTATTAC
1 ATTACAACTCTATTCC
*
15349489 ATTACAACCCTATTCC
1 ATTACAACTCTATTCC
15349505 ATT
1 ATT
15349508 TCAGTGAACC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.31, C:0.29, G:0.00, T:0.39
Consensus pattern (16 bp):
ATTACAACTCTATTCC
Found at i:15357809 original size:21 final size:21
Alignment explanation
Indices: 15357785--15357836 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 21
15357775 TTTGAGTCTA
15357785 TTTATTTTATTATTT-TTTAAT
1 TTTATTTTATT-TTTCTTTAAT
*
15357806 TTTAATTTTATTTTTCTTTTAT
1 TTT-ATTTTATTTTTCTTTAAT
*
15357828 TTAATTTTA
1 TTTATTTTA
15357837 AATACTTATG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 12 0.44
22 15 0.56
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (21 bp):
TTTATTTTATTTTTCTTTAAT
Found at i:15368845 original size:52 final size:52
Alignment explanation
Indices: 15368788--15368897 Score: 211
Period size: 52 Copynumber: 2.1 Consensus size: 52
15368778 TTTATATCCT
*
15368788 TTAAAATTTTTAAAATTTTAAATTAATAAAAGTAAAATTACAATTTGTTCCC
1 TTAAAATTTTTAAAATTTTAAATTAATAAAAGTAAAAGTACAATTTGTTCCC
15368840 TTAAAATTTTTAAAATTTTAAATTAATAAAAGTAAAAGTACAATTTGTTCCC
1 TTAAAATTTTTAAAATTTTAAATTAATAAAAGTAAAAGTACAATTTGTTCCC
15368892 TTAAAA
1 TTAAAA
15368898 ATGATAAAGA
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 57 1.00
ACGTcount: A:0.47, C:0.07, G:0.05, T:0.41
Consensus pattern (52 bp):
TTAAAATTTTTAAAATTTTAAATTAATAAAAGTAAAAGTACAATTTGTTCCC
Found at i:15368912 original size:52 final size:52
Alignment explanation
Indices: 15368798--15368918 Score: 181
Period size: 52 Copynumber: 2.3 Consensus size: 52
15368788 TTAAAATTTT
* * **
15368798 TAAAATTTTAAATTAATAAAAGTAAAATTACAATTTGTTCCCTTAAAATTTT
1 TAAAATTTTAAATTAATAAAAGTAAAAGTACAATTTGTTCCCTTAAAAATGA
15368850 TAAAATTTTAAATTAATAAAAGTAAAAGTACAATTTGTTCCCTTAAAAATGA
1 TAAAATTTTAAATTAATAAAAGTAAAAGTACAATTTGTTCCCTTAAAAATGA
*
15368902 TAAAGA-TTTAATTTAAT
1 TAAA-ATTTTAAATTAAT
15368919 CTTTTAAAAA
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
52 62 0.98
53 1 0.02
ACGTcount: A:0.48, C:0.07, G:0.06, T:0.40
Consensus pattern (52 bp):
TAAAATTTTAAATTAATAAAAGTAAAAGTACAATTTGTTCCCTTAAAAATGA
Found at i:15376953 original size:15 final size:15
Alignment explanation
Indices: 15376933--15376961 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
15376923 GTATTGTTGC
15376933 TTGATAACACGGTGA
1 TTGATAACACGGTGA
15376948 TTGATAACACGGTG
1 TTGATAACACGGTG
15376962 TGTGAGGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (15 bp):
TTGATAACACGGTGA
Found at i:15378519 original size:56 final size:56
Alignment explanation
Indices: 15378424--15378529 Score: 158
Period size: 56 Copynumber: 1.9 Consensus size: 56
15378414 GTATAAGGTT
* * *
15378424 GATATTGTGACACCCTAGTGTCTATGTCGCGACAATGAAGGCAGTATGCTCAGGCC
1 GATATTGCGACACCCTAGTGTCTATGTCACGACAATGAAGACAGTATGCTCAGGCC
* * *
15378480 GATATTGCGACACCCTAGTGTCTGTGTCACTACATTGAAGACAGTATGCT
1 GATATTGCGACACCCTAGTGTCTATGTCACGACAATGAAGACAGTATGCT
15378530 TAGCTTCATG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 44 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (56 bp):
GATATTGCGACACCCTAGTGTCTATGTCACGACAATGAAGACAGTATGCTCAGGCC
Found at i:15382898 original size:54 final size:53
Alignment explanation
Indices: 15382814--15382922 Score: 200
Period size: 54 Copynumber: 2.0 Consensus size: 53
15382804 ATTGCTTACA
*
15382814 TTTTCCCTACGTGGCGTGCTCTTTATGTCGCCTCCTCTGTCCCCTCTGTCCTT
1 TTTTCCCTACATGGCGTGCTCTTTATGTCGCCTCCTCTGTCCCCTCTGTCCTT
15382867 TTNTTCCCTACATGGCGTGCTCTTTATGTCGCCTCCTCTGTCCCCTCTGTCCTT
1 TT-TTCCCTACATGGCGTGCTCTTTATGTCGCCTCCTCTGTCCCCTCTGTCCTT
15382921 TT
1 TT
15382923 CCTTTTTCTA
Statistics
Matches: 54, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
53 2 0.04
54 52 0.96
ACGTcount: A:0.05, C:0.37, G:0.16, T:0.42
Consensus pattern (53 bp):
TTTTCCCTACATGGCGTGCTCTTTATGTCGCCTCCTCTGTCCCCTCTGTCCTT
Found at i:15388327 original size:23 final size:23
Alignment explanation
Indices: 15388277--15388328 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
15388267 AATTTTAAAA
* * *
15388277 TTAGAATTATTTAGTGATAATAT
1 TTAGGATTATTTAGTAACAATAT
15388300 TTAGGATTATTTAGTAACAATAT
1 TTAGGATTATTTAGTAACAATAT
15388323 TTAGGA
1 TTAGGA
15388329 AAAATCTAGC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.38, C:0.02, G:0.15, T:0.44
Consensus pattern (23 bp):
TTAGGATTATTTAGTAACAATAT
Found at i:15395477 original size:16 final size:16
Alignment explanation
Indices: 15395464--15395531 Score: 73
Period size: 16 Copynumber: 4.2 Consensus size: 16
15395454 AATGTAATGA
*
15395464 AATAGAGCTGTAATAC
1 AATAGAACTGTAATAC
**
15395480 AATAGAACTGTAATGG
1 AATAGAACTGTAATAC
** *
15395496 AATAGAGTTGTAATAG
1 AATAGAACTGTAATAC
15395512 AATAGAACTGTAATAGC
1 AATAGAACTGTAATA-C
15395529 AAT
1 AAT
15395532 TCAATTGTTT
Statistics
Matches: 42, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
16 39 0.93
17 3 0.07
ACGTcount: A:0.46, C:0.07, G:0.21, T:0.26
Consensus pattern (16 bp):
AATAGAACTGTAATAC
Found at i:15395492 original size:32 final size:32
Alignment explanation
Indices: 15395456--15395525 Score: 113
Period size: 32 Copynumber: 2.2 Consensus size: 32
15395446 TTTGGTTTAA
15395456 TGTAATGAAATAGAGCTGTAATACAATAGAAC
1 TGTAATGAAATAGAGCTGTAATACAATAGAAC
* * *
15395488 TGTAATGGAATAGAGTTGTAATAGAATAGAAC
1 TGTAATGAAATAGAGCTGTAATACAATAGAAC
15395520 TGTAAT
1 TGTAAT
15395526 AGCAATTCAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.44, C:0.06, G:0.21, T:0.29
Consensus pattern (32 bp):
TGTAATGAAATAGAGCTGTAATACAATAGAAC
Found at i:15395598 original size:43 final size:44
Alignment explanation
Indices: 15395507--15395600 Score: 138
Period size: 43 Copynumber: 2.1 Consensus size: 44
15395497 ATAGAGTTGT
15395507 AATAGAATAGAACTGTAATAGCAATTCAATTGTTTGGTTGAATGG
1 AATAGAATAGAACTGTAATAGCAATT-AATTGTTTGGTTGAATGG
* *
15395552 AATAGAATAGAACTGTAATAG-TATT-TTGTGTTTGGTTGAATGG
1 AATAGAATAGAACTGTAATAGCAATTAAT-TGTTTGGTTGAATGG
15395595 AATAGA
1 AATAGA
15395601 GTTGTAATAG
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
42 1 0.02
43 21 0.46
44 3 0.07
45 21 0.46
ACGTcount: A:0.37, C:0.04, G:0.23, T:0.35
Consensus pattern (44 bp):
AATAGAATAGAACTGTAATAGCAATTAATTGTTTGGTTGAATGG
Found at i:15395759 original size:58 final size:61
Alignment explanation
Indices: 15395696--15395846 Score: 166
Period size: 58 Copynumber: 2.5 Consensus size: 61
15395686 TAATAGGATC
* ** **
15395696 ATTATTAAATATAATTTAATAAAAACAATAATACATAATTTAATTCTATT-TTAATA-AATTT
1 ATTATTAAATATAA-TTAATAAAAATAATAATACATAATTTAATAATATTCTTAATATAA-CA
* * *
15395757 ATTAGTAAATATAATT--TAACAATAATAATATATAATTTAATAATATTCTTAATATAACA
1 ATTATTAAATATAATTAATAAAAATAATAATACATAATTTAATAATATTCTTAATATAACA
15395816 ATTATTAAAATATAAATTAATAAAAATAATA
1 ATTATT-AAATAT-AATTAATAAAAATAATA
15395847 TATAATATTA
Statistics
Matches: 74, Mismatches: 10, Indels: 10
0.79 0.11 0.11
Matches are distributed among these distances:
58 26 0.35
59 11 0.15
60 10 0.14
61 17 0.23
63 10 0.14
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.41
Consensus pattern (61 bp):
ATTATTAAATATAATTAATAAAAATAATAATACATAATTTAATAATATTCTTAATATAACA
Found at i:15395862 original size:22 final size:21
Alignment explanation
Indices: 15395825--15395870 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 21
15395815 AATTATTAAA
15395825 ATATAAATTAATAAAAATAAT
1 ATATAAATTAATAAAAATAAT
15395846 ATATAATATTACA-AAAAATAAT
1 ATATAA-ATTA-ATAAAAATAAT
15395868 ATA
1 ATA
15395871 CAACCTACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 6 0.26
22 16 0.70
23 1 0.04
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (21 bp):
ATATAAATTAATAAAAATAAT
Found at i:15396003 original size:12 final size:12
Alignment explanation
Indices: 15395973--15396007 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
15395963 TCTATGTTAC
15395973 TTAAAGAATAAT
1 TTAAAGAATAAT
*
15395985 TTAAAAGAGTAAT
1 TT-AAAGAATAAT
15395998 TTAAAGAATA
1 TTAAAGAATA
15396008 TATTGTCTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.31
Consensus pattern (12 bp):
TTAAAGAATAAT
Found at i:15397496 original size:13 final size:13
Alignment explanation
Indices: 15397478--15397503 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15397468 GTGAAGAACC
15397478 AAGCAGAGCACAA
1 AAGCAGAGCACAA
15397491 AAGCAGAGCACAA
1 AAGCAGAGCACAA
15397504 GAATTAATCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.23, G:0.23, T:0.00
Consensus pattern (13 bp):
AAGCAGAGCACAA
Found at i:15406153 original size:4 final size:4
Alignment explanation
Indices: 15406144--15406170 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
15406134 GCTATTTATA
15406144 AATT AATT AATT AATT AATT AATT AAT
1 AATT AATT AATT AATT AATT AATT AAT
15406171 AACCTTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
AATT
Found at i:15409287 original size:21 final size:20
Alignment explanation
Indices: 15409261--15409306 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
15409251 CGCAACTCTT
*
15409261 TTTTTTCATATTAAAATATTA
1 TTTTTTCA-AATAAAATATTA
*
15409282 TTTTTTTAAATAAAATATTA
1 TTTTTTCAAATAAAATATTA
15409302 TTTTT
1 TTTTT
15409307 ATTTTTATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 16 0.70
21 7 0.30
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (20 bp):
TTTTTTCAAATAAAATATTA
Found at i:15410848 original size:26 final size:26
Alignment explanation
Indices: 15410819--15410892 Score: 73
Period size: 26 Copynumber: 2.8 Consensus size: 26
15410809 CCTATGCTTT
15410819 TATTTATTATTTTAA-ATTGATTA-AAA
1 TATTTATTATTTTAATATT--TTACAAA
* *
15410845 TATTTA-TAATATAATATTTTATCAAA
1 TATTTATTATTTTAATATTTTA-CAAA
*
15410871 TATTTATTATTTTACTATTTTA
1 TATTTATTATTTTAATATTTTA
15410893 TCATTTTATT
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
24 3 0.08
25 6 0.15
26 18 0.46
27 12 0.31
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (26 bp):
TATTTATTATTTTAATATTTTACAAA
Found at i:15410895 original size:27 final size:26
Alignment explanation
Indices: 15410842--15410895 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
15410832 AAATTGATTA
15410842 AAATATTTATAATATAATATTTTATC
1 AAATATTTATAATATAATATTTTATC
* * *
15410868 AAATATTTATTATTTTACTATTTTATC
1 AAATATTTA-TAATATAATATTTTATC
15410895 A
1 A
15410896 TTTTATTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.54
Consensus pattern (26 bp):
AAATATTTATAATATAATATTTTATC
Found at i:15411173 original size:21 final size:21
Alignment explanation
Indices: 15411149--15411202 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
15411139 CACCATTGTT
*
15411149 TCTAATCTCACTGCTACAGTA
1 TCTAATCTCACCGCTACAGTA
15411170 TCTAATCTCACCGCTACAGTA
1 TCTAATCTCACCGCTACAGTA
*
15411191 ACTAATCTCACC
1 TCTAATCTCACC
15411203 TCCACTACTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.30, C:0.33, G:0.07, T:0.30
Consensus pattern (21 bp):
TCTAATCTCACCGCTACAGTA
Found at i:15411226 original size:21 final size:21
Alignment explanation
Indices: 15411202--15411241 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
15411192 CTAATCTCAC
15411202 CTCCACTACTATTTTTAACTT
1 CTCCACTACTATTTTTAACTT
*
15411223 CTCCACTACTGTTTTTAAC
1 CTCCACTACTATTTTTAAC
15411242 CTCACCGGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.23, C:0.30, G:0.03, T:0.45
Consensus pattern (21 bp):
CTCCACTACTATTTTTAACTT
Found at i:15417651 original size:47 final size:47
Alignment explanation
Indices: 15417542--15417644 Score: 172
Period size: 47 Copynumber: 2.2 Consensus size: 47
15417532 GTCACAGTAA
*
15417542 TGCAGATAAATTATCACTTAATAATATTGTGAGCAAGCCACCACTTT
1 TGCAGATAAATTGTCACTTAATAATATTGTGAGCAAGCCACCACTTT
15417589 TGCAGATAAATTGTCACTTAATAATATTGTG-GACAAGCCACCACTTT
1 TGCAGATAAATTGTCACTTAATAATATTGTGAG-CAAGCCACCACTTT
*
15417636 TGTAGATAA
1 TGCAGATAA
15417645 TCTGTCATTT
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
46 1 0.02
47 52 0.98
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (47 bp):
TGCAGATAAATTGTCACTTAATAATATTGTGAGCAAGCCACCACTTT
Found at i:15417729 original size:19 final size:19
Alignment explanation
Indices: 15417701--15417738 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
15417691 TGTGGCTATA
15417701 AAAATAATTTTTTCACTTT
1 AAAATAATTTTTTCACTTT
*
15417720 AAAATCATTTTTTCACTTT
1 AAAATAATTTTTTCACTTT
15417739 GGCATGTGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.13, G:0.00, T:0.53
Consensus pattern (19 bp):
AAAATAATTTTTTCACTTT
Found at i:15422974 original size:17 final size:17
Alignment explanation
Indices: 15422954--15422987 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
15422944 AAAAGAAATG
15422954 AAGAAAAGAAAAAGAGA
1 AAGAAAAGAAAAAGAGA
* *
15422971 AAGAAACGAAACAGAGA
1 AAGAAAAGAAAAAGAGA
15422988 GCAGGGGGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.71, C:0.06, G:0.24, T:0.00
Consensus pattern (17 bp):
AAGAAAAGAAAAAGAGA
Found at i:15423014 original size:15 final size:15
Alignment explanation
Indices: 15422994--15423031 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
15422984 GAGAGCAGGG
*
15422994 GGAAGAAAGAAGGAA
1 GGAAGAAAGAAAGAA
15423009 GGAAGAAAGAAAGAA
1 GGAAGAAAGAAAGAA
15423024 GGAA-AAAG
1 GGAAGAAAG
15423032 GGAAAAATTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 4 0.18
15 18 0.82
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (15 bp):
GGAAGAAAGAAAGAA
Found at i:15424232 original size:18 final size:18
Alignment explanation
Indices: 15424192--15424235 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
15424182 TTGCTACGAA
* *
15424192 ATAAATGACTGTTATTGT
1 ATAACTGACTGTTATAGT
15424210 ATAACTGACTGTTATAG-
1 ATAACTGACTGTTATAGT
15424227 AGTAACTGA
1 A-TAACTGA
15424236 ATGCTACTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 1 0.04
18 22 0.96
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.36
Consensus pattern (18 bp):
ATAACTGACTGTTATAGT
Found at i:15426247 original size:20 final size:20
Alignment explanation
Indices: 15426210--15426247 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
15426200 TGATGGGGAG
*
15426210 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
15426230 CAAGAA-ATCGAAGCTGGA
1 CAAGAATATC-AAGCTGGA
15426248 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Found at i:15428212 original size:46 final size:46
Alignment explanation
Indices: 15428145--15428372 Score: 282
Period size: 46 Copynumber: 5.0 Consensus size: 46
15428135 AGTGTGCTCT
* * *
15428145 CTGATATGAAATGTGCAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
15428191 CTGATATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
15428237 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * **
15428283 GTGTTATGAAATGA-ACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAAT-ATGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
15428329 ATGACA-GAAA-ATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATGAAATAT--GTAAGACCATGGTTGAAAGATACCATGGCA
15428373 TCATGTCAAA
Statistics
Matches: 161, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
43 1 0.01
45 4 0.02
46 156 0.97
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:15429299 original size:14 final size:15
Alignment explanation
Indices: 15429280--15429314 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
15429270 TTTAATTTTC
*
15429280 AAAATTTCAAAAA-A
1 AAAATTTAAAAAATA
15429294 AAAATTTAAAAAATA
1 AAAATTTAAAAAATA
15429309 AAAATT
1 AAAATT
15429315 GCATTTTGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (15 bp):
AAAATTTAAAAAATA
Found at i:15429373 original size:30 final size:29
Alignment explanation
Indices: 15429310--15429426 Score: 119
Period size: 30 Copynumber: 3.9 Consensus size: 29
15429300 TAAAAAATAA
* *
15429310 AAATTGCATTTTGACCCCTAAACTTT-TCCT
1 AAATTTCATTTTGA-CCCTAAACTTTCT-TT
15429340 AAATTTCATTTTGACCCTTAAACTTTCTTT
1 AAATTTCATTTTGACCC-TAAACTTTCTTT
* * *
15429370 AAATTTCACTTAGACTCCTAAACTTTCATT
1 AAATTTCATTTTGAC-CCTAAACTTTCTTT
* * *
15429400 AAATTTCATTTTAATCCTAAATTTTCT
1 AAATTTCATTTTGACCCTAAACTTTCT
15429427 AAAAATTACA
Statistics
Matches: 73, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
29 13 0.18
30 57 0.78
31 3 0.04
ACGTcount: A:0.30, C:0.21, G:0.03, T:0.45
Consensus pattern (29 bp):
AAATTTCATTTTGACCCTAAACTTTCTTT
Found at i:15430156 original size:58 final size:58
Alignment explanation
Indices: 15430087--15430209 Score: 151
Period size: 58 Copynumber: 2.1 Consensus size: 58
15430077 ATTTACAGGT
* *
15430087 CATTTTCATTTTTCATTTTAGA-AAAAACCACATTCATTTCCCAATGATTCC-ATTTCTC
1 CATTTTCATTTTT-ATTTTAGAGAAAAA-CACAATCATTTCCAAATGATTCCTATTTCTC
* * * *
15430145 CATTTTTATTTTTATTTTGGAGAAAAACATAATCATTTCCAAATGTTTCCTATTTCTC
1 CATTTTCATTTTTATTTTAGAGAAAAACACAATCATTTCCAAATGATTCCTATTTCTC
*
15430203 TATTTTC
1 CATTTTC
15430210 TTCATTTCTA
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
57 26 0.47
58 29 0.53
ACGTcount: A:0.28, C:0.20, G:0.05, T:0.47
Consensus pattern (58 bp):
CATTTTCATTTTTATTTTAGAGAAAAACACAATCATTTCCAAATGATTCCTATTTCTC
Found at i:15437272 original size:23 final size:24
Alignment explanation
Indices: 15437220--15437321 Score: 125
Period size: 24 Copynumber: 4.3 Consensus size: 24
15437210 TACCGACATA
*
15437220 TCAGCTCGTAAGAGCTTACTGTTT
1 TCAGCTCATAAGAGCTTACTGTTT
**
15437244 TCAGCTCATTGGAGCTTACTG-TT
1 TCAGCTCATAAGAGCTTACTGTTT
* *
15437267 TCAGCTTATAAAAGCTTACTGTTT
1 TCAGCTCATAAGAGCTTACTGTTT
* * *
15437291 TCAGCTTATAAAAGCTTATTGTTT
1 TCAGCTCATAAGAGCTTACTGTTT
15437315 TCAGCTC
1 TCAGCTC
15437322 GTCAAAACTT
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
23 19 0.28
24 49 0.72
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.40
Consensus pattern (24 bp):
TCAGCTCATAAGAGCTTACTGTTT
Found at i:15463044 original size:21 final size:20
Alignment explanation
Indices: 15462998--15463035 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
15462988 ATTATATCTC
15462998 CAAAAA-CATCAATTTCATG
1 CAAAAATCATCAATTTCATG
15463017 CAAAAATCATCAAATTTCA
1 CAAAAATCATC-AATTTCA
15463036 CTCACAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 6 0.35
20 4 0.24
21 7 0.41
ACGTcount: A:0.50, C:0.21, G:0.03, T:0.26
Consensus pattern (20 bp):
CAAAAATCATCAATTTCATG
Found at i:15467069 original size:28 final size:28
Alignment explanation
Indices: 15467037--15467097 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
15467027 AAAACAAGAA
*
15467037 TCAAATTAGTTCAA-CTGCAAGTTCTTAG
1 TCAAATCAGTTCAACCT-CAAGTTCTTAG
*
15467065 TCAAATCAGTTCAACCTCAAGTTCTTTG
1 TCAAATCAGTTCAACCTCAAGTTCTTAG
15467093 TCAAA
1 TCAAA
15467098 AGAAAAGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 28 0.93
29 2 0.07
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (28 bp):
TCAAATCAGTTCAACCTCAAGTTCTTAG
Found at i:15468089 original size:28 final size:28
Alignment explanation
Indices: 15468000--15468089 Score: 69
Period size: 33 Copynumber: 3.1 Consensus size: 28
15467990 AATCAAGATG
15468000 TAGTTAAAAGTAATTATGTAATAAA-TT
1 TAGTTAAAAGTAATTATGTAATAAATTT
* **
15468027 TA-TTAAAATTTAA-TATAAAAATGAAATTTGTTT
1 TAGTTAAAA-GTAATTAT-GTAAT-AAA----TTT
15468060 TAGTTAAAAGTAATTATGTAATAAATTT
1 TAGTTAAAAGTAATTATGTAATAAATTT
15468088 TA
1 TA
15468090 TTTTATATTT
Statistics
Matches: 47, Mismatches: 6, Indels: 19
0.65 0.08 0.26
Matches are distributed among these distances:
26 9 0.19
27 8 0.17
28 8 0.17
32 3 0.06
33 10 0.21
34 9 0.19
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.43
Consensus pattern (28 bp):
TAGTTAAAAGTAATTATGTAATAAATTT
Found at i:15469493 original size:33 final size:33
Alignment explanation
Indices: 15469427--15469502 Score: 82
Period size: 33 Copynumber: 2.3 Consensus size: 33
15469417 GACATAAACT
* * * *
15469427 TTCTTTTTTACTGTTATTTATCTGTTGTTTTGC
1 TTCTTTTTTACTGTCATTTATCTATTATATTGC
15469460 TTCTTTTTTACTGTCATTTCA-CTATTATATTGC
1 TTCTTTTTTACTGTCATTT-ATCTATTATATTGC
* *
15469493 TACTATTTTA
1 TTCTTTTTTA
15469503 TTGTTATTGT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
33 35 0.97
34 1 0.03
ACGTcount: A:0.16, C:0.14, G:0.08, T:0.62
Consensus pattern (33 bp):
TTCTTTTTTACTGTCATTTATCTATTATATTGC
Found at i:15473353 original size:44 final size:44
Alignment explanation
Indices: 15473304--15473481 Score: 356
Period size: 44 Copynumber: 4.0 Consensus size: 44
15473294 TTTTTTTAAT
15473304 TCTCAAAAAATAAACACCGTTTTCGAGCGGAGCCAAAAGGTAGC
1 TCTCAAAAAATAAACACCGTTTTCGAGCGGAGCCAAAAGGTAGC
15473348 TCTCAAAAAATAAACACCGTTTTCGAGCGGAGCCAAAAGGTAGC
1 TCTCAAAAAATAAACACCGTTTTCGAGCGGAGCCAAAAGGTAGC
15473392 TCTCAAAAAATAAACACCGTTTTCGAGCGGAGCCAAAAGGTAGC
1 TCTCAAAAAATAAACACCGTTTTCGAGCGGAGCCAAAAGGTAGC
15473436 TCTCAAAAAATAAACACCGTTTTCGAGCGGAGCCAAAAGGTAGC
1 TCTCAAAAAATAAACACCGTTTTCGAGCGGAGCCAAAAGGTAGC
15473480 TC
1 TC
15473482 AGTTTCCATT
Statistics
Matches: 134, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 134 1.00
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.19
Consensus pattern (44 bp):
TCTCAAAAAATAAACACCGTTTTCGAGCGGAGCCAAAAGGTAGC
Found at i:15477894 original size:17 final size:18
Alignment explanation
Indices: 15477868--15477906 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
15477858 AAAAGTGTGG
15477868 AAAA-TGTTCTC-AATAT
1 AAAATTGTTCTCTAATAT
*
15477884 AAAATTGTTCTCTCATAT
1 AAAATTGTTCTCTAATAT
15477902 AAAAT
1 AAAAT
15477907 CAAAAGCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 7 0.35
18 9 0.45
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.38
Consensus pattern (18 bp):
AAAATTGTTCTCTAATAT
Found at i:15478083 original size:15 final size:15
Alignment explanation
Indices: 15478063--15478093 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
15478053 AAAACAATAT
15478063 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
15478078 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
15478093 A
1 A
15478094 CTTACATGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.32, G:0.06, T:0.39
Consensus pattern (15 bp):
AACTCTTGACCTTTC
Found at i:15481465 original size:15 final size:15
Alignment explanation
Indices: 15481455--15481484 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
15481445 TCCCTTCTTG
15481455 ACCACGACCTTTTCC
1 ACCACGACCTTTTCC
*
15481470 ACCACGACCATTTCC
1 ACCACGACCTTTTCC
15481485 TCGATCTCCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.47, G:0.07, T:0.23
Consensus pattern (15 bp):
ACCACGACCTTTTCC
Found at i:15482252 original size:17 final size:18
Alignment explanation
Indices: 15482226--15482264 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
15482216 CAAATTGTGG
15482226 AAAA-TGTTCTC-AATAT
1 AAAATTGTTCTCTAATAT
*
15482242 AAAATTGTTCTCTCATAT
1 AAAATTGTTCTCTAATAT
15482260 AAAAT
1 AAAAT
15482265 CAAAAGCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 7 0.35
18 9 0.45
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.38
Consensus pattern (18 bp):
AAAATTGTTCTCTAATAT
Found at i:15482441 original size:15 final size:15
Alignment explanation
Indices: 15482421--15482451 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
15482411 AAAATAATAT
15482421 AACTCTTAACCTTTC
1 AACTCTTAACCTTTC
*
15482436 AACTCTTGACCTTTC
1 AACTCTTAACCTTTC
15482451 A
1 A
15482452 CTTACATGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.32, G:0.03, T:0.39
Consensus pattern (15 bp):
AACTCTTAACCTTTC
Found at i:15488592 original size:6 final size:6
Alignment explanation
Indices: 15488583--15488748 Score: 109
Period size: 6 Copynumber: 26.7 Consensus size: 6
15488573 AAATAACCCT
* * * *
15488583 AAATCA AAATCC AAATCG AAATCA AAATCA AAATCA AAATTA AAATCT
1 AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA
* * * ** *
15488631 AAA-CTG AGATCG AAATTG AAATCA AAATCA AAATCA ATGAGTGTTTCA
1 AAATC-A AAATCA AAATCA AAATCA AAATCA AAATCA A--A----ATCA
** * * * *
15488679 AAATTG AAATCA AAATCG AAATAA AAATAA AAATAA AAATCA AAATCA
1 AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA
*
15488727 AAATCA AAATCA AAATAA AAAT
1 AAATCA AAATCA AAATCA AAAT
15488749 TGAAATCGAA
Statistics
Matches: 129, Mismatches: 23, Indels: 16
0.77 0.14 0.10
Matches are distributed among these distances:
5 1 0.01
6 121 0.94
7 1 0.01
8 1 0.01
10 1 0.01
12 4 0.03
ACGTcount: A:0.61, C:0.12, G:0.06, T:0.21
Consensus pattern (6 bp):
AAATCA
Found at i:15488754 original size:18 final size:18
Alignment explanation
Indices: 15488685--15488762 Score: 84
Period size: 18 Copynumber: 4.3 Consensus size: 18
15488675 TTCAAAATTG
* * *
15488685 AAATCAAAATCGAAATAA
1 AAATAAAAATCAAAATCA
*
15488703 AAATAAAAATAAAAATCA
1 AAATAAAAATCAAAATCA
*
15488721 AAATCAAAATCAAAATCA
1 AAATAAAAATCAAAATCA
** *
15488739 AAATAAAAATTGAAATCG
1 AAATAAAAATCAAAATCA
15488757 AAATAA
1 AAATAA
15488763 CCCTAAATAA
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 50 1.00
ACGTcount: A:0.69, C:0.09, G:0.04, T:0.18
Consensus pattern (18 bp):
AAATAAAAATCAAAATCA
Found at i:15491611 original size:22 final size:22
Alignment explanation
Indices: 15491537--15491619 Score: 80
Period size: 23 Copynumber: 3.7 Consensus size: 22
15491527 TAGCCTCTAG
*
15491537 ACACAACC-AATTTACCCT-CA
1 ACACAACCAAATATACCCTCCA
* * *
15491557 AAAGTCAACCAAACATACCCTCAAA
1 ACA--CAACCAAATATACCCTC-CA
*
15491582 ACATAACCAAATATACCCTCCA
1 ACACAACCAAATATACCCTCCA
15491604 ACACAACCAAATATAC
1 ACACAACCAAATATAC
15491620 AACCAAATAT
Statistics
Matches: 49, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
20 2 0.04
22 21 0.43
23 23 0.47
25 3 0.06
ACGTcount: A:0.48, C:0.35, G:0.01, T:0.16
Consensus pattern (22 bp):
ACACAACCAAATATACCCTCCA
Found at i:15491623 original size:12 final size:12
Alignment explanation
Indices: 15491606--15491631 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
15491596 ACCCTCCAAC
15491606 ACAACCAAATAT
1 ACAACCAAATAT
15491618 ACAACCAAATAT
1 ACAACCAAATAT
15491630 AC
1 AC
15491632 CCTCAAAGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.27, G:0.00, T:0.15
Consensus pattern (12 bp):
ACAACCAAATAT
Found at i:15491629 original size:34 final size:35
Alignment explanation
Indices: 15491586--15491653 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 35
15491576 CTCAAAACAT
*
15491586 AACCAAATATACCCTCCAA-CACAACCAAATATAC
1 AACCAAATATACCCTCAAAGCACAACCAAATATAC
15491620 AACCAAATATACCCTCAAAGCACAACCAAATATA
1 AACCAAATATACCCTCAAAGCACAACCAAATATA
15491654 GCCTCCCAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 18 0.56
35 14 0.44
ACGTcount: A:0.51, C:0.32, G:0.01, T:0.15
Consensus pattern (35 bp):
AACCAAATATACCCTCAAAGCACAACCAAATATAC
Found at i:15491638 original size:80 final size:80
Alignment explanation
Indices: 15491539--15491689 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
15491529 GCCTCTAGAC
* * *
15491539 ACAACCAATTTACCCTCAAAAG-TCAACCAAACATACCCTCAAAACATAACCAAATATACCCTCC
1 ACAACCAATATACCCTC-AAAGCACAACCAAACATACCCTCAAAACAGAACCAAATATACCCTCC
15491603 -AACACAACCAAATAT
65 AAACACAACCAAATAT
* * ** *
15491618 ACAACCAAATATACCCTCAAAGCACAACCAAATATAGCCTCCCAACAGAACGAAATATACCCTCC
1 ACAACC-AATATACCCTCAAAGCACAACCAAACATACCCTCAAAACAGAACCAAATATACCCTCC
15491683 AAACACA
65 AAACACA
15491690 TCCACTTAAA
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 10 0.16
80 45 0.74
81 6 0.10
ACGTcount: A:0.48, C:0.34, G:0.03, T:0.15
Consensus pattern (80 bp):
ACAACCAATATACCCTCAAAGCACAACCAAACATACCCTCAAAACAGAACCAAATATACCCTCCA
AACACAACCAAATAT
Found at i:15491644 original size:23 final size:23
Alignment explanation
Indices: 15491618--15491689 Score: 92
Period size: 23 Copynumber: 3.1 Consensus size: 23
15491608 AACCAAATAT
15491618 ACAACCAAATATACCCT-CAAAGC
1 ACAACCAAATATACCCTCCAAA-C
* *
15491641 ACAACCAAATATAGCCTCCCAAC
1 ACAACCAAATATACCCTCCAAAC
* *
15491664 AGAACGAAATATACCCTCCAAAC
1 ACAACCAAATATACCCTCCAAAC
15491687 ACA
1 ACA
15491690 TCCACTTAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
23 38 0.93
24 3 0.07
ACGTcount: A:0.47, C:0.35, G:0.06, T:0.12
Consensus pattern (23 bp):
ACAACCAAATATACCCTCCAAAC
Found at i:15491650 original size:57 final size:58
Alignment explanation
Indices: 15491562--15491677 Score: 171
Period size: 57 Copynumber: 2.0 Consensus size: 58
15491552 CCTCAAAAGT
*
15491562 CAACCAAACATACCCTCAAAACATAACCAAATATACCCT-CCAACACAACCAAATATA
1 CAACCAAACATACCCTCAAAACACAACCAAATATACCCTCCCAACACAACCAAATATA
* * * * *
15491619 CAACCAAATATACCCTCAAAGCACAACCAAATATAGCCTCCCAACAGAACGAAATATA
1 CAACCAAACATACCCTCAAAACACAACCAAATATACCCTCCCAACACAACCAAATATA
15491677 C
1 C
15491678 CCTCCAAACA
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
57 35 0.67
58 17 0.33
ACGTcount: A:0.49, C:0.34, G:0.03, T:0.14
Consensus pattern (58 bp):
CAACCAAACATACCCTCAAAACACAACCAAATATACCCTCCCAACACAACCAAATATA
Found at i:15492766 original size:25 final size:26
Alignment explanation
Indices: 15492737--15492833 Score: 153
Period size: 25 Copynumber: 3.8 Consensus size: 26
15492727 TCTCTTTAAT
*
15492737 AACTGGGACA-AAGCCCTTTTCGATA
1 AACTGGGGCATAAGCCCTTTTCGATA
15492762 AACTGGGGCA-AAGCCCTTTTCGATA
1 AACTGGGGCATAAGCCCTTTTCGATA
* *
15492787 AACTGGGGCATAAGCCCTTTCCAATA
1 AACTGGGGCATAAGCCCTTTTCGATA
15492813 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
15492834 GCACTTCCTC
Statistics
Matches: 67, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 34 0.51
26 33 0.49
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.25
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGATA
Found at i:15492814 original size:51 final size:51
Alignment explanation
Indices: 15492737--15492833 Score: 151
Period size: 51 Copynumber: 1.9 Consensus size: 51
15492727 TCTCTTTAAT
* *
15492737 AACTGGGACAAAGCCCTTTTCGATAAACTGGGGCA-AAGCCCTTTTCGATA
1 AACTGGGACAAAGCCCTTTCCAATAAACTGGGGCATAAGCCCTTTTCGATA
*
15492787 AACTGGGGCATAAGCCCTTTCCAATAAACTGGGGCATAAGCCCTTTT
1 AACTGGGACA-AAGCCCTTTCCAATAAACTGGGGCATAAGCCCTTTT
15492834 GCACTTCCTC
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
50 9 0.21
51 23 0.55
52 10 0.24
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.25
Consensus pattern (51 bp):
AACTGGGACAAAGCCCTTTCCAATAAACTGGGGCATAAGCCCTTTTCGATA
Found at i:15492908 original size:20 final size:20
Alignment explanation
Indices: 15492883--15492957 Score: 111
Period size: 20 Copynumber: 3.9 Consensus size: 20
15492873 TTATGAATTC
*
15492883 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
15492903 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
15492923 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
15492943 ATCATGT--ATATCATA
1 ATCATGTGCATATCATA
15492958 TCCCACGTGT
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
18 8 0.15
20 43 0.81
21 2 0.04
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:15492914 original size:11 final size:11
Alignment explanation
Indices: 15492883--15492938 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
15492873 TTATGAATTC
15492883 ATCATGTGCAT
1 ATCATGTGCAT
* *
15492894 TTCA--TACAT
1 ATCATGTGCAT
15492903 ATCATGTGCAT
1 ATCATGTGCAT
*
15492914 ATCA--TACAT
1 ATCATGTGCAT
15492923 ATCATGTGCAT
1 ATCATGTGCAT
15492934 ATCAT
1 ATCAT
15492939 ATCAATCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:15492955 original size:9 final size:10
Alignment explanation
Indices: 15492900--15492956 Score: 57
Period size: 9 Copynumber: 5.8 Consensus size: 10
15492890 GCATTTCATA
15492900 CATATCATGT
1 CATATCATGT
*
15492910 GCATATCAT-A
1 -CATATCATGT
15492920 CATATCATGT
1 CATATCATGT
*
15492930 GCATATCATAT
1 -CATATCATGT
15492941 CA-ATCATGT
1 CATATCATGT
15492950 -ATATCAT
1 CATATCAT
15492957 ATCCCACGTG
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 1 0.03
9 19 0.49
10 2 0.05
11 17 0.44
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (10 bp):
CATATCATGT
Found at i:15496535 original size:25 final size:25
Alignment explanation
Indices: 15496501--15496552 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
15496491 AGACGTAAAA
15496501 CTTAATCTCTATTGATTTCTATTAG
1 CTTAATCTCTATTGATTTCTATTAG
15496526 CTTAATCTCTATTGATTTCTATTAG
1 CTTAATCTCTATTGATTTCTATTAG
15496551 CT
1 CT
15496553 AAAATGCATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.23, C:0.17, G:0.08, T:0.52
Consensus pattern (25 bp):
CTTAATCTCTATTGATTTCTATTAG
Found at i:15501048 original size:50 final size:50
Alignment explanation
Indices: 15500937--15501050 Score: 140
Period size: 50 Copynumber: 2.3 Consensus size: 50
15500927 AGACACACTA
* * * *
15500937 CAGCTCGTATAATCTTACCGATTTGTAGCTCGTGAGAGCTTACCAATTCT
1 CAGCTCGTATGAGCTTACCGATTTATAGCTCGTGAGAGCATACCAATTCT
* * **
15500987 CAGCTCATATGAGCTTACCGATTTATAGCTCGTTAGAGCATACTGATTCAT
1 CAGCTCGTATGAGCTTACCGATTTATAGCTCGTGAGAGCATACCAATTC-T
15501038 -AGCTCGTATGAGC
1 CAGCTCGTATGAGC
15501051 ATACATGTAC
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
50 53 0.98
51 1 0.02
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.32
Consensus pattern (50 bp):
CAGCTCGTATGAGCTTACCGATTTATAGCTCGTGAGAGCATACCAATTCT
Found at i:15501051 original size:25 final size:25
Alignment explanation
Indices: 15500938--15501054 Score: 87
Period size: 25 Copynumber: 4.7 Consensus size: 25
15500928 GACACACTAC
* * * **
15500938 AGCTCGTATAATCTTACCGATTTGT
1 AGCTCGTATGAGCATACCGATTCAT
* *
15500963 AGCTCGTGA-GAGCTTACCAATTC-T
1 AGCTCGT-ATGAGCATACCGATTCAT
* * *
15500987 CAGCTCATATGAGCTTACCGATTTAT
1 -AGCTCGTATGAGCATACCGATTCAT
*
15501013 AGCTCGT-TAGAGCATACTGATTCAT
1 AGCTCGTAT-GAGCATACCGATTCAT
15501038 AGCTCGTATGAGCATAC
1 AGCTCGTATGAGCATAC
15501055 ATGTACAGGA
Statistics
Matches: 75, Mismatches: 11, Indels: 12
0.77 0.11 0.12
Matches are distributed among these distances:
24 3 0.04
25 69 0.92
26 3 0.04
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.32
Consensus pattern (25 bp):
AGCTCGTATGAGCATACCGATTCAT
Found at i:15501242 original size:30 final size:30
Alignment explanation
Indices: 15501203--15501264 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 30
15501193 TACATGAAAT
15501203 ACATAGAAAT-GAT-ATTACATGATATATTGAA
1 ACATAGAAATGGATGA-TACATG-TATA-TGAA
15501234 ACAT-GAAATGGATGATACATGTATATGAA
1 ACATAGAAATGGATGATACATGTATATGAA
15501263 AC
1 AC
15501265 TTGCTTAGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
29 6 0.21
30 9 0.31
31 13 0.45
32 1 0.03
ACGTcount: A:0.47, C:0.08, G:0.16, T:0.29
Consensus pattern (30 bp):
ACATAGAAATGGATGATACATGTATATGAA
Found at i:15503595 original size:40 final size:40
Alignment explanation
Indices: 15503530--15503608 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
15503520 ACTATGTTTG
* *
15503530 GCACTTAGTGTGCATTTCGAGATAGCTTCGGCTATATATA
1 GCACTTAGTGTGCAATTAGAGATAGCTTCGGCTATATATA
*
15503570 GCACTTAGTGTGCGAATTAGA-ATAGCTTTGGCTATATAT
1 GCACTTAGTGTGC-AATTAGAGATAGCTTCGGCTATATAT
15503609 GTAACGCCCC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
40 30 0.86
41 5 0.14
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (40 bp):
GCACTTAGTGTGCAATTAGAGATAGCTTCGGCTATATATA
Found at i:15504807 original size:23 final size:24
Alignment explanation
Indices: 15504766--15504810 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
15504756 TTTGCTCTTC
*
15504766 TAGCATGAACTTGTCTTACCTTTT
1 TAGCATGAACTCGTCTTACCTTTT
*
15504790 TAGCAT-AACTCGTTTTACCTT
1 TAGCATGAACTCGTCTTACCTT
15504811 ACCTTACCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.22, C:0.22, G:0.11, T:0.44
Consensus pattern (24 bp):
TAGCATGAACTCGTCTTACCTTTT
Found at i:15505066 original size:55 final size:54
Alignment explanation
Indices: 15504887--15505134 Score: 235
Period size: 55 Copynumber: 4.7 Consensus size: 54
15504877 ACCTTACTAT
* * ** * *
15504887 TGCCATGACTTGTCATGGTCTTACATGGTATCC-T---TTGGA-AACTTACCAT
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAA
* * * *
15504936 TTCCATGTCTTAACATGGTCTTACATCGTATCCTTGCCTTAT-GAACTCATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAA
* * *
15504989 TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTTATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAG-AACTTATCAA
* * *
15505044 TGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGA-AACCTTACCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA-CTTATCAA
*
15505098 TTGCCATG-CATTGGCATGGTCTTACATGGTATCCTTG
1 -TGCCATGTC-TTGACATGGTCTTACATGGTATCCTTG
15505135 AACCCTAATG
Statistics
Matches: 162, Mismatches: 25, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
49 28 0.17
50 1 0.01
52 2 0.01
53 44 0.27
54 9 0.06
55 76 0.47
56 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (54 bp):
TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAA
Found at i:15510803 original size:19 final size:20
Alignment explanation
Indices: 15510770--15510809 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
15510760 TCAAAAATGA
*
15510770 TATACGGATTTTTCTCTCTT
1 TATACGGATTTTTCTCCCTT
15510790 TATACGGA-TTTTCTCCCTT
1 TATACGGATTTTTCTCCCTT
15510809 T
1 T
15510810 CCTTGTACAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.15, C:0.23, G:0.10, T:0.53
Consensus pattern (20 bp):
TATACGGATTTTTCTCCCTT
Found at i:15511295 original size:34 final size:31
Alignment explanation
Indices: 15511247--15511317 Score: 90
Period size: 34 Copynumber: 2.2 Consensus size: 31
15511237 CATGGCAGTT
15511247 TTCT-CTTTCACTTCCTTGCGTCTGTAATTA
1 TTCTGCTTTCACTTCCTTGCGTCTGTAATTA
* *
15511277 TTCTGNNNCTTTCCCTTCCTTGCGTCTGTAATTC
1 TTCTG---CTTTCACTTCCTTGCGTCTGTAATTA
15511311 TTCTGCT
1 TTCTGCT
15511318 ATGTAAGTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
30 4 0.11
31 2 0.06
34 29 0.83
ACGTcount: A:0.08, C:0.28, G:0.11, T:0.48
Consensus pattern (31 bp):
TTCTGCTTTCACTTCCTTGCGTCTGTAATTA
Found at i:15512566 original size:17 final size:17
Alignment explanation
Indices: 15512544--15512576 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
15512534 GATGAAATTG
15512544 AATTCGAAACTATGGCA
1 AATTCGAAACTATGGCA
15512561 AATTCGAAACTATGGC
1 AATTCGAAACTATGGC
15512577 TTAGGGCTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.24
Consensus pattern (17 bp):
AATTCGAAACTATGGCA
Found at i:15537078 original size:252 final size:251
Alignment explanation
Indices: 15536634--15537095 Score: 683
Period size: 252 Copynumber: 1.8 Consensus size: 251
15536624 ACTTGGATGA
* * * * *
15536634 TAAGATTCTCTTGTTTCGAAGAAATACAATATCACATCCAACACGTAGGACACGATATTTCAACC
1 TAAGATTATCTTGTTTCAAAGAAATAAAATATCACATCCAACACGTAGGACACGATATTTAAAAC
* *
15536699 TTCAATACCAAAATCGTCTCATAATTTCCAAAATTTATGTATTGAAAATTTAAAAAGTATATTCG
66 TTCAATACCAAAATCATCTCATAATTTCCAAAATTTATGTATTGAAAATTTAAAAAGGATATTCG
* * * * **
15536764 GTCGTTTGGTCAAGCGATAAATCGAAACCCAACACGTAGGGCACAATTTCTCGAAATTTCCAAAC
131 ATCGTTTGGTCAAACGATAAATCAAAACCCAACACATAGGGCACAATTTCTAAAAATTTCCAAAC
* *
15536829 GTCAAATATTGCCTTGTTTAAAAATCTCGAATAAAAATGCAATAGTATGAAACAAT
196 GCCAAATACTGCCTTGTTTAAAAATCTCGAATAAAAATGCAATAGTATGAAACAAT
*
15536885 TAAGATTATCTTGTTTCAAAGAAATAAAATATCACATCCAGCACGTAGGACACGATATTTTAAAA
1 TAAGATTATCTTGTTTCAAAGAAATAAAATATCACATCCAACACGTAGGACACGATA-TTTAAAA
* ** * *
15536950 CTTTAATGTCAAAATCATCTCATGA-TTCTCAAAATTTATGTATTGAAAATTTTAAAAGGATATT
65 CTTCAATACCAAAATCATCTCATAATTTC-CAAAATTTATGTATTGAAAATTTAAAAAGGATATT
* *
15537014 CGATTGTTTGGTCAAACGATAAATCAAAACCCAACACATAGGGCAGAATTTCTAAAAATTTCCAA
129 CGATCGTTTGGTCAAACGATAAATCAAAACCCAACACATAGGGCACAATTTCTAAAAATTTCCAA
*
15537079 ATGCCAAATACTGCCTT
194 ACGCCAAATACTGCCTT
15537096 ATTGAGAAAA
Statistics
Matches: 185, Mismatches: 24, Indels: 3
0.87 0.11 0.01
Matches are distributed among these distances:
251 56 0.30
252 129 0.70
ACGTcount: A:0.40, C:0.18, G:0.12, T:0.30
Consensus pattern (251 bp):
TAAGATTATCTTGTTTCAAAGAAATAAAATATCACATCCAACACGTAGGACACGATATTTAAAAC
TTCAATACCAAAATCATCTCATAATTTCCAAAATTTATGTATTGAAAATTTAAAAAGGATATTCG
ATCGTTTGGTCAAACGATAAATCAAAACCCAACACATAGGGCACAATTTCTAAAAATTTCCAAAC
GCCAAATACTGCCTTGTTTAAAAATCTCGAATAAAAATGCAATAGTATGAAACAAT
Found at i:15537389 original size:23 final size:22
Alignment explanation
Indices: 15537363--15537414 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
15537353 AAGACAAATG
* *
15537363 AAATAAATAATATGAACAATTTT
1 AAATAAATAACAAG-ACAATTTT
*
15537386 AAATAAATGACAAGACAATTTT
1 AAATAAATAACAAGACAATTTT
15537408 AAATAAA
1 AAATAAA
15537415 AAAATTCCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 15 0.58
23 11 0.42
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.29
Consensus pattern (22 bp):
AAATAAATAACAAGACAATTTT
Done.