Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 50 of 276
Found at i:15546448 original size:23 final size:23
Alignment explanation
Indices: 15546418--15546463 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
15546408 ATGATAGTCA
15546418 GCACTTTCCATCACTCTGAACTT
1 GCACTTTCCATCACTCTGAACTT
15546441 GCACTTTCCATCACTCTGAACTT
1 GCACTTTCCATCACTCTGAACTT
15546464 TTCTTCTAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.35, G:0.09, T:0.35
Consensus pattern (23 bp):
GCACTTTCCATCACTCTGAACTT
Found at i:15550564 original size:33 final size:33
Alignment explanation
Indices: 15550526--15550590 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
15550516 CAACACGTAT
15550526 GGCACAATTTCTCGAAATTTCCAAACGCCAAAG
1 GGCACAATTTCTCGAAATTTCCAAACGCCAAAG
15550559 GGCACAATTTCTCGAAATTTCCAAACGCCAAA
1 GGCACAATTTCTCGAAATTTCCAAACGCCAAA
15550591 TATTGCCTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.37, C:0.28, G:0.14, T:0.22
Consensus pattern (33 bp):
GGCACAATTTCTCGAAATTTCCAAACGCCAAAG
Found at i:15551451 original size:12 final size:12
Alignment explanation
Indices: 15551416--15551454 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
15551406 GGCCTAAAGC
15551416 AAGTAATATATA
1 AAGTAATATATA
*
15551428 AAATAAT-T-TA
1 AAGTAATATATA
15551438 AAGTAATATATA
1 AAGTAATATATA
15551450 AAGTA
1 AAGTA
15551455 GTAAATAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
10 8 0.35
11 2 0.09
12 13 0.57
ACGTcount: A:0.59, C:0.00, G:0.08, T:0.33
Consensus pattern (12 bp):
AAGTAATATATA
Found at i:15558199 original size:15 final size:15
Alignment explanation
Indices: 15558179--15558210 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
15558169 AATATCATTC
15558179 ATACTTCACCTTCCT
1 ATACTTCACCTTCCT
15558194 ATACTTCACCTTCCT
1 ATACTTCACCTTCCT
15558209 AT
1 AT
15558211 GGCCGAATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.22, C:0.38, G:0.00, T:0.41
Consensus pattern (15 bp):
ATACTTCACCTTCCT
Found at i:15558801 original size:25 final size:25
Alignment explanation
Indices: 15558773--15558822 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
15558763 TTATTCTTCA
*
15558773 TGTTCTATCTTTATATCATTTCTAT
1 TGTTCTATCTTTATACCATTTCTAT
15558798 TGTTCTATCTTTATACCATTTCTAT
1 TGTTCTATCTTTATACCATTTCTAT
15558823 ATTGTTTTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.20, C:0.18, G:0.04, T:0.58
Consensus pattern (25 bp):
TGTTCTATCTTTATACCATTTCTAT
Found at i:15562735 original size:31 final size:30
Alignment explanation
Indices: 15562700--15562758 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
15562690 CACCCTTAAA
* * * *
15562700 ATATTTGCACTATTATTCCTTCAACTTTTTC
1 ATATTTACACT-TTAATCCCTCAAATTTTTC
15562731 ATATTTACACTTTAATCCCTCAAATTTT
1 ATATTTACACTTTAATCCCTCAAATTTT
15562759 GAGTATTTAC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 14 0.58
31 10 0.42
ACGTcount: A:0.27, C:0.22, G:0.02, T:0.49
Consensus pattern (30 bp):
ATATTTACACTTTAATCCCTCAAATTTTTC
Found at i:15565203 original size:21 final size:21
Alignment explanation
Indices: 15565177--15565231 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
15565167 ACCATTATTC
* *
15565177 CTAATCTCACTGCTACAGTAT
1 CTAATCTCACCGCTACAGTAA
15565198 CTAATCTCACCGCTACAGTAA
1 CTAATCTCACCGCTACAGTAA
*
15565219 CTAATCTTACCGC
1 CTAATCTCACCGC
15565232 CACCGCTGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.29
Consensus pattern (21 bp):
CTAATCTCACCGCTACAGTAA
Found at i:15578689 original size:13 final size:13
Alignment explanation
Indices: 15578671--15578697 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
15578661 TAAAAGATAT
15578671 AACTACAAAAGAC
1 AACTACAAAAGAC
15578684 AACTACAAAAGAC
1 AACTACAAAAGAC
15578697 A
1 A
15578698 TAATAATGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.22, G:0.07, T:0.07
Consensus pattern (13 bp):
AACTACAAAAGAC
Found at i:15579621 original size:34 final size:34
Alignment explanation
Indices: 15579583--15579654 Score: 135
Period size: 34 Copynumber: 2.1 Consensus size: 34
15579573 AGCTCAAATC
15579583 ATACTATTTCAATCATCTTAAGTGCCTAACCAAT
1 ATACTATTTCAATCATCTTAAGTGCCTAACCAAT
*
15579617 ATACTATTTCAATCATCTTAAGTGTCTAACCAAT
1 ATACTATTTCAATCATCTTAAGTGCCTAACCAAT
15579651 ATAC
1 ATAC
15579655 ACACTTATAC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.36, C:0.22, G:0.06, T:0.36
Consensus pattern (34 bp):
ATACTATTTCAATCATCTTAAGTGCCTAACCAAT
Found at i:15580437 original size:37 final size:38
Alignment explanation
Indices: 15580394--15580560 Score: 202
Period size: 37 Copynumber: 4.5 Consensus size: 38
15580384 ATCCAACCAA
*
15580394 AACACGCCAAACGCTCATAAGAGCTAATCC-ATCTGAT
1 AACACGCCAAATGCTCATAAGAGCTAATCCAATCTGAT
*
15580431 AACACGCCAAATGCTCATAAAAGCTAATCCAGA--TGAT
1 AACACGCCAAATGCTCATAAGAGCTAATCCA-ATCTGAT
* * *
15580468 AACACGCTAAGTGCTCATAAGAGCTATTCCAAT-TGAT
1 AACACGCCAAATGCTCATAAGAGCTAATCCAATCTGAT
* *
15580505 AACACGCTAAATGCTCA-AAGAGATAATCCAATC-GAT
1 AACACGCCAAATGCTCATAAGAGCTAATCCAATCTGAT
* *
15580541 AACATGCCAAATGCTTATAA
1 AACACGCCAAATGCTCATAA
15580561 AAGTTATACA
Statistics
Matches: 113, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
36 31 0.27
37 81 0.72
39 1 0.01
ACGTcount: A:0.41, C:0.24, G:0.14, T:0.22
Consensus pattern (38 bp):
AACACGCCAAATGCTCATAAGAGCTAATCCAATCTGAT
Found at i:15581031 original size:22 final size:24
Alignment explanation
Indices: 15580989--15581032 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
15580979 ATTAGCTTGC
*
15580989 ATTTTATATTCCTATTTACTTTAA
1 ATTTTATATCCCTATTTACTTTAA
15581013 ATTTTATA-CCCT-TTTACTTT
1 ATTTTATATCCCTATTTACTTT
15581033 TTAAAATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 8 0.42
23 3 0.16
24 8 0.42
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (24 bp):
ATTTTATATCCCTATTTACTTTAA
Found at i:15585291 original size:12 final size:13
Alignment explanation
Indices: 15585255--15585292 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
15585245 AAATATTTGA
15585255 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
15585268 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
15585282 CTTG-TCTTAAT
1 CTTGTTCTTAAT
15585293 ATTCCAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:15589475 original size:49 final size:49
Alignment explanation
Indices: 15589418--15589515 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
15589408 AGGTTGATAA
15589418 ATCTAAAATTGAAACCATTAAAAAACTACCTCCCCCTAATTCGATTAAG
1 ATCTAAAATTGAAACCATTAAAAAACTACCTCCCCCTAATTCGATTAAG
*
15589467 ATCTAAAATTGAAACCATTGAAAAACTACCTCCCCCTAATTCGATTAAG
1 ATCTAAAATTGAAACCATTAAAAAACTACCTCCCCCTAATTCGATTAAG
15589516 GCTATTAGAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.42, C:0.24, G:0.07, T:0.27
Consensus pattern (49 bp):
ATCTAAAATTGAAACCATTAAAAAACTACCTCCCCCTAATTCGATTAAG
Found at i:15594522 original size:12 final size:13
Alignment explanation
Indices: 15594486--15594523 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
15594476 AAATATTTGA
15594486 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
15594499 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
15594513 CTTG-TCTTAAT
1 CTTGTTCTTAAT
15594524 ATTCCAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:15595959 original size:46 final size:46
Alignment explanation
Indices: 15595892--15596059 Score: 193
Period size: 46 Copynumber: 3.6 Consensus size: 46
15595882 GCCCATAAGC
* *
15595892 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCACAAGT
* *
15595938 GAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTT-ACATCTCAC----
1 GAACTCGGACTCAACTCAACGAGTTCG---GAC--GTTCGCATC-CACAAGT
* *
15595985 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCACAAGT
15596031 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
15596060 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 7, Indels: 22
0.78 0.05 0.17
Matches are distributed among these distances:
42 4 0.04
43 4 0.04
44 2 0.02
46 55 0.53
47 27 0.26
49 2 0.02
50 4 0.04
51 6 0.06
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCACAAGT
Found at i:15596006 original size:93 final size:93
Alignment explanation
Indices: 15595891--15596062 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
15595881 CGCCCATAAG
* *
15595891 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCA
15595956 ACGAGTTCGAATGCCTAGTTACATCTCA
66 ACGAGTTCGAATGCCTAGTTACATCTCA
* *
15595984 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCA
*
15596049 ACGAGTTCGGATGC
66 ACGAGTTCGAATGC
15596063 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCA
ACGAGTTCGAATGCCTAGTTACATCTCA
Found at i:15596078 original size:46 final size:45
Alignment explanation
Indices: 15595884--15596071 Score: 145
Period size: 46 Copynumber: 4.1 Consensus size: 45
15595874 TGTAACCCGC
* * * * * *
15595884 CCAT-AAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATCAAGTGAACTCGGACTCAACTCAACGAGTTC-GG-ATGCTCAA
*
15595930 CCA-CAAGTGAACTCGGACTCAACTCAACGAGTTCGAATGC-CTAGTTA
1 CCATCAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---A
* * * * *
15595977 -CATCTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATC-AAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAA
15596023 CCAT-AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAA
1 CCATCAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAA
15596067 CCATC
1 CCATC
15596072 CTAGTGACAT
Statistics
Matches: 113, Mismatches: 16, Indels: 27
0.72 0.10 0.17
Matches are distributed among these distances:
43 1 0.01
44 12 0.11
45 2 0.02
46 61 0.54
47 31 0.27
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.20
Consensus pattern (45 bp):
CCATCAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAA
Found at i:15598985 original size:35 final size:35
Alignment explanation
Indices: 15598931--15599142 Score: 370
Period size: 35 Copynumber: 6.0 Consensus size: 35
15598921 ATAATCTTCA
* * *
15598931 ATGATATGTAATCCTAGATATGATACAATCTTAAAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
15598967 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
15599002 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
15599037 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
15599072 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
15599107 ATGATTGCAATCTTAGATATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTAGA
15599143 AGATATGATT
Statistics
Matches: 171, Mismatches: 3, Indels: 3
0.97 0.02 0.02
Matches are distributed among these distances:
35 153 0.89
36 5 0.03
37 13 0.08
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:15599648 original size:18 final size:17
Alignment explanation
Indices: 15599624--15599683 Score: 63
Period size: 17 Copynumber: 3.5 Consensus size: 17
15599614 CCAATATATT
15599624 TTATATTTTTTATATAA
1 TTATATTTTTTATATAA
*
15599641 TTAT-TATTCTTATA-AA
1 TTATAT-TTTTTATATAA
15599657 -TATATTTTTTATTATATA
1 TTATATTTTTTA-TATA-A
15599675 TTATATTTT
1 TTATATTTT
15599684 AAATTTATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
15 8 0.23
16 6 0.17
17 12 0.34
18 1 0.03
19 8 0.23
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (17 bp):
TTATATTTTTTATATAA
Found at i:15599668 original size:15 final size:16
Alignment explanation
Indices: 15599625--15599683 Score: 59
Period size: 16 Copynumber: 3.5 Consensus size: 16
15599615 CAATATATTT
15599625 TATATTTTTTATATAA
1 TATATTTTTTATATAA
15599641 T-TATTATTCTTATA-AA
1 TATATT-TT-TTATATAA
15599657 TATATTTTTTATTATATA
1 TATATTTTTTA-TATA-A
15599675 TTATATTTT
1 -TATATTTT
15599684 AAATTTATTA
Statistics
Matches: 36, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
15 7 0.19
16 10 0.28
17 10 0.28
18 1 0.03
19 8 0.22
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (16 bp):
TATATTTTTTATATAA
Found at i:15599708 original size:26 final size:26
Alignment explanation
Indices: 15599660--15599709 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
15599650 TTATAAATAT
* * * *
15599660 ATTTTTTATTATATATTATATTTTAA
1 ATTTATTATTAAATATCACATTTTAA
15599686 ATTTATTATTAAATATCACATTTT
1 ATTTATTATTAAATATCACATTTT
15599710 TTTATATGCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (26 bp):
ATTTATTATTAAATATCACATTTTAA
Found at i:15602539 original size:22 final size:22
Alignment explanation
Indices: 15602513--15602554 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
15602503 GATATCATTT
15602513 TAAGGTAGCATGTTAAGCAGGA
1 TAAGGTAGCATGTTAAGCAGGA
*
15602535 TAAGGTAGTATGTTAAGCAG
1 TAAGGTAGCATGTTAAGCAG
15602555 AAATGCCCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.36, C:0.07, G:0.31, T:0.26
Consensus pattern (22 bp):
TAAGGTAGCATGTTAAGCAGGA
Found at i:15605512 original size:14 final size:13
Alignment explanation
Indices: 15605488--15605549 Score: 61
Period size: 13 Copynumber: 4.5 Consensus size: 13
15605478 CTTCTATTTT
15605488 AAAAAGTAAAAATAA
1 AAAAAG-AAAAA-AA
*
15605503 AAAAAGAAAAGAA
1 AAAAAGAAAAAAA
*
15605516 AAAGAGAAAAAAA
1 AAAAAGAAAAAAA
* *
15605529 TAAAGAGAAAAAAG
1 -AAAAAGAAAAAAA
15605543 AAAAAGA
1 AAAAAGA
15605550 TGGAGAGGCC
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
13 19 0.46
14 16 0.39
15 6 0.15
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.05
Consensus pattern (13 bp):
AAAAAGAAAAAAA
Found at i:15605537 original size:22 final size:20
Alignment explanation
Indices: 15605489--15605547 Score: 73
Period size: 21 Copynumber: 2.9 Consensus size: 20
15605479 TTCTATTTTA
* *
15605489 AAAAGTAAAAATAAAAAAAG
1 AAAAGAAAAAAGAAAAAAAG
*
15605509 AAAAGAAAAAGAGAAAAAAAT
1 AAAAGAAAAA-AGAAAAAAAG
15605530 AAAGAGAAAAAAGAAAAA
1 AAA-AGAAAAAAGAAAAA
15605548 GATGGAGAGG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 9 0.26
21 18 0.53
22 7 0.21
ACGTcount: A:0.81, C:0.00, G:0.14, T:0.05
Consensus pattern (20 bp):
AAAAGAAAAAAGAAAAAAAG
Found at i:15606519 original size:44 final size:44
Alignment explanation
Indices: 15606471--15606557 Score: 149
Period size: 44 Copynumber: 2.0 Consensus size: 44
15606461 GATTTTAGCA
*
15606471 TGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGCAGATT
1 TGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGCAGATT
15606515 TGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGAT
1 TGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGAT
15606558 CTAACCTTCA
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
44 40 0.98
45 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.28
Consensus pattern (44 bp):
TGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATT
Found at i:15606757 original size:119 final size:119
Alignment explanation
Indices: 15606549--15607377 Score: 1451
Period size: 119 Copynumber: 7.0 Consensus size: 119
15606539 CAGATCGAAG
* *
15606549 ATAGCAGATCTAACCTTCAGATGTTTCTACTAAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* *
15606614 TTACAAGGAACAAATCGAGGACATAGTAGATTTGACTCTCAGACGTTCTCAAAG
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
15606668 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* *
15606733 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTATCAGACGTGCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
15606787 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* *
15606852 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTATCAGACGTGCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
15606906 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
15606971 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* *
15607025 ATAGCAGATCTAACCTTTAGATGTTTATACTAAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
*
15607090 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTTAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* *
15607144 ATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* *
15607209 TTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAAACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* * *
15607263 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGC
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* * * * *
15607328 TTACAAGGAACAAATCGAGGACATTGCAGATATGGCTCTCAAATGTTCTC
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTC
15607378 CAACAGACTC
Statistics
Matches: 682, Mismatches: 28, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
119 682 1.00
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.29
Consensus pattern (119 bp):
ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
Found at i:15607409 original size:83 final size:83
Alignment explanation
Indices: 15607304--15607656 Score: 589
Period size: 83 Copynumber: 4.2 Consensus size: 83
15607294 GAAGCAGATC
*
15607304 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGGCTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
*
15607369 AATGTTCTCCAACAGACT
66 AATGTTCTCAAACAGACT
*
15607387 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGTACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
15607452 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * * *
15607470 CAAGATGGTTTGGCATCCTTATGTTTACAAGGAACAAATCGAGGACCTTGCAGACATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
15607535 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * *
15607553 CAAGATGGTTTAGGCATCCTTGTGCTTACAAGGAACAAGTCGAGGACCTTGCAGATATGATTCTC
1 CAAGATGGTTT-GGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTC
15607618 AAATGTTCTCAAACAGACT
65 AAATGTTCTCAAACAGACT
* *
15607637 CAAGATGATTTGACATCCTT
1 CAAGATGGTTTGGCATCCTT
15607657 ACAAATCGAA
Statistics
Matches: 254, Mismatches: 15, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
83 177 0.70
84 77 0.30
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.27
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:15608081 original size:17 final size:17
Alignment explanation
Indices: 15608051--15608130 Score: 106
Period size: 17 Copynumber: 4.5 Consensus size: 17
15608041 AATGATATGT
15608051 AATCTTAGATATGATAC
1 AATCTTAGATATGATAC
* * *
15608068 AATTTTAAATATGATTGC
1 AATCTTAGATATGA-TAC
15608086 AATCTTAGATATGATAC
1 AATCTTAGATATGATAC
15608103 AATCTTAGATATGATATAC
1 AATCTTAGATATG--ATAC
15608122 AATCTTAGA
1 AATCTTAGA
15608131 AGATATGATT
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
17 27 0.50
18 14 0.26
19 13 0.24
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.38
Consensus pattern (17 bp):
AATCTTAGATATGATAC
Found at i:15608090 original size:35 final size:36
Alignment explanation
Indices: 15608042--15608130 Score: 135
Period size: 35 Copynumber: 2.5 Consensus size: 36
15608032 ATAATCTTCA
* *
15608042 ATGATATGTAATCTTAGATATGATACAATTTTAAAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAAAT
*
15608078 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAAAT
*
15608113 ATGATATACAATCTTAGA
1 ATGATATGCAATCTTAGA
15608131 AGATATGATT
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
35 32 0.67
36 16 0.33
ACGTcount: A:0.40, C:0.09, G:0.12, T:0.38
Consensus pattern (36 bp):
ATGATATGCAATCTTAGATATGATACAATCTTAAAT
Found at i:15608135 original size:17 final size:17
Alignment explanation
Indices: 15608085--15608136 Score: 61
Period size: 17 Copynumber: 2.9 Consensus size: 17
15608075 AATATGATTG
*
15608085 CAATCTTAG-ATATGATA
1 CAATCTTAGAAGAT-ATA
15608102 CAATCTTAGATATGATATA
1 CAATCTTAGA-A-GATATA
15608121 CAATCTTAGAAGATAT
1 CAATCTTAGAAGATAT
15608137 GATTTTGTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
17 14 0.45
18 1 0.03
19 14 0.45
20 2 0.06
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.35
Consensus pattern (17 bp):
CAATCTTAGAAGATATA
Found at i:15608637 original size:18 final size:17
Alignment explanation
Indices: 15608613--15608672 Score: 63
Period size: 17 Copynumber: 3.5 Consensus size: 17
15608603 CCAATATATT
15608613 TTATATTTTTTATATAA
1 TTATATTTTTTATATAA
*
15608630 TTAT-TATTCTTATA-AA
1 TTATAT-TTTTTATATAA
15608646 -TATATTTTTTATTATATA
1 TTATATTTTTTA-TATA-A
15608664 TTATATTTT
1 TTATATTTT
15608673 AAATTTATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
15 8 0.23
16 6 0.17
17 12 0.34
18 1 0.03
19 8 0.23
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (17 bp):
TTATATTTTTTATATAA
Found at i:15608657 original size:15 final size:16
Alignment explanation
Indices: 15608614--15608672 Score: 59
Period size: 16 Copynumber: 3.5 Consensus size: 16
15608604 CAATATATTT
15608614 TATATTTTTTATATAA
1 TATATTTTTTATATAA
15608630 T-TATTATTCTTATA-AA
1 TATATT-TT-TTATATAA
15608646 TATATTTTTTATTATATA
1 TATATTTTTTA-TATA-A
15608664 TTATATTTT
1 -TATATTTT
15608673 AAATTTATTA
Statistics
Matches: 36, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
15 7 0.19
16 10 0.28
17 10 0.28
18 1 0.03
19 8 0.22
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (16 bp):
TATATTTTTTATATAA
Found at i:15608697 original size:26 final size:26
Alignment explanation
Indices: 15608649--15608698 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
15608639 TTATAAATAT
* * * *
15608649 ATTTTTTATTATATATTATATTTTAA
1 ATTTATTATTAAATATCACATTTTAA
15608675 ATTTATTATTAAATATCACATTTT
1 ATTTATTATTAAATATCACATTTT
15608699 TTTATATGCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (26 bp):
ATTTATTATTAAATATCACATTTTAA
Found at i:15622918 original size:39 final size:39
Alignment explanation
Indices: 15622875--15622987 Score: 190
Period size: 39 Copynumber: 2.9 Consensus size: 39
15622865 ATGCAAGATA
*
15622875 CTGGAAATGTATCCGGGCTAAAGTCTCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
15622914 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCCTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
15622953 CAGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTT
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTT
15622988 TGTCCTGGTA
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 68 1.00
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:15628228 original size:18 final size:18
Alignment explanation
Indices: 15628205--15628241 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
15628195 GCGCAGCGCG
15628205 ACGTGAAATATGGGTTTA
1 ACGTGAAATATGGGTTTA
15628223 ACGTGAAATATGGGTTTA
1 ACGTGAAATATGGGTTTA
15628241 A
1 A
15628242 AATTTTACCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.32
Consensus pattern (18 bp):
ACGTGAAATATGGGTTTA
Found at i:15631071 original size:68 final size:68
Alignment explanation
Indices: 15630879--15631077 Score: 263
Period size: 68 Copynumber: 2.9 Consensus size: 68
15630869 GGGGTAATAC
* * * * * *
15630879 CATGGAGCCCGTCAGGACATTAAACATAGGTTCATAATGTGTAAGACCATAGTTAGACAATGACA
1 CATGGAGTCCGCCAGGACATTAAACATGGGTTCATAATGTGTAAGACCATAGTTAGGCTATGGCA
15630944 ACA
66 ACA
* * *
15630947 CATGGAGTCCACCAAGACATTAAACATGGGTTCATAATGTGTAAGACCATAATTAGGCTATGGCA
1 CATGGAGTCCGCCAGGACATTAAACATGGGTTCATAATGTGTAAGACCATAGTTAGGCTATGGCA
15631012 ACA
66 ACA
* * ** * *
15631015 TATGGAGTCCGCCAGGACATTAAACATGGGGTCATAAAATGTAAGACCTTAGTTAGGTTATGG
1 CATGGAGTCCGCCAGGACATTAAACATGGGTTCATAATGTGTAAGACCATAGTTAGGCTATGG
15631078 AGTCAGATAA
Statistics
Matches: 113, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
68 113 1.00
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.24
Consensus pattern (68 bp):
CATGGAGTCCGCCAGGACATTAAACATGGGTTCATAATGTGTAAGACCATAGTTAGGCTATGGCA
ACA
Found at i:15639277 original size:6 final size:6
Alignment explanation
Indices: 15639266--15639298 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
15639256 AATGAAGCAT
*
15639266 TTTTCA TTTTCA TTTTTA TTTTCA TTTTCA TTT
1 TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA TTT
15639299 CTATTTTTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.15, C:0.12, G:0.00, T:0.73
Consensus pattern (6 bp):
TTTTCA
Found at i:15639286 original size:12 final size:12
Alignment explanation
Indices: 15639263--15639307 Score: 56
Period size: 12 Copynumber: 3.7 Consensus size: 12
15639253 GCAAATGAAG
15639263 CATTTTTCATTTT
1 CATTTTT-ATTTT
15639276 CATTTTTATTTT
1 CATTTTTATTTT
*
15639288 CATTTTCA-TTT
1 CATTTTTATTTT
15639299 CTATTTTTA
1 C-ATTTTTA
15639308 GAAAACCACA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
11 4 0.14
12 18 0.62
13 7 0.24
ACGTcount: A:0.18, C:0.13, G:0.00, T:0.69
Consensus pattern (12 bp):
CATTTTTATTTT
Found at i:15639289 original size:18 final size:18
Alignment explanation
Indices: 15639266--15639305 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
15639256 AATGAAGCAT
*
15639266 TTTTCATTTTCATTTTTA
1 TTTTCATTTTCATTTCTA
15639284 TTTTCATTTTCATTTCTA
1 TTTTCATTTTCATTTCTA
15639302 TTTT
1 TTTT
15639306 TAGAAAACCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.15, C:0.12, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTTCATTTTCATTTCTA
Found at i:15641004 original size:14 final size:15
Alignment explanation
Indices: 15640976--15641081 Score: 92
Period size: 15 Copynumber: 7.3 Consensus size: 15
15640966 AAGCACAAAG
15640976 ACATGGTGGACTCAT
1 ACATGGTGGACTCAT
*
15640991 ACAT-GTGGATTCAT
1 ACATGGTGGACTCAT
* *
15641005 ACTTGGTGGACTCGT
1 ACATGGTGGACTCAT
* *
15641020 ATAT-GTGGATTCAT
1 ACATGGTGGACTCAT
*
15641034 ACTTGGTGGACTCAT
1 ACATGGTGGACTCAT
* * *
15641049 ACA-CGAGGATTCAT
1 ACATGGTGGACTCAT
* *
15641063 ACTTGGTGAACTCAT
1 ACATGGTGGACTCAT
15641078 ACAT
1 ACAT
15641082 AAGGACTCAT
Statistics
Matches: 67, Mismatches: 21, Indels: 6
0.71 0.22 0.06
Matches are distributed among these distances:
14 32 0.48
15 35 0.52
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (15 bp):
ACATGGTGGACTCAT
Found at i:15641012 original size:29 final size:29
Alignment explanation
Indices: 15640979--15641095 Score: 162
Period size: 29 Copynumber: 4.0 Consensus size: 29
15640969 CACAAAGACA
*
15640979 TGGTGGACTCATACATGTGGATTCATACT
1 TGGTGGACTCATACATGAGGATTCATACT
* * *
15641008 TGGTGGACTCGTATATGTGGATTCATACT
1 TGGTGGACTCATACATGAGGATTCATACT
*
15641037 TGGTGGACTCATACACGAGGATTCATACT
1 TGGTGGACTCATACATGAGGATTCATACT
* * *
15641066 TGGTGAACTCATACATAAGGACTCATACT
1 TGGTGGACTCATACATGAGGATTCATACT
15641095 T
1 T
15641096 ACAATTAGTT
Statistics
Matches: 78, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 78 1.00
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.32
Consensus pattern (29 bp):
TGGTGGACTCATACATGAGGATTCATACT
Found at i:15641230 original size:56 final size:56
Alignment explanation
Indices: 15641101--15641484 Score: 315
Period size: 56 Copynumber: 6.8 Consensus size: 56
15641091 TACTTACAAT
* * * * *
15641101 TAGTTCCTGCGGACTCTTGCTTGAAAGATAG-CCCTACGGACTCTTGCATGAAAGA
1 TAGTCCCTGCAGAATCTTGCATGAAAGATAGTCCCTACGGACTCTTGCTTGAAAGA
* * * * * *
15641156 TGGTCCTTG-TGAACTCTTGCTTGAAAGATAGTCTCTACGGACTCCTGCTTGAAAGA
1 TAGTCCCTGCAGAA-TCTTGCATGAAAGATAGTCCCTACGGACTCTTGCTTGAAAGA
** * * * *
15641212 TAGTCATTGCAGAATCTTGCATAAAAGATAGTCCTTGCAGACTCTTGCTTGAAAGA
1 TAGTCCCTGCAGAATCTTGCATGAAAGATAGTCCCTACGGACTCTTGCTTGAAAGA
* * * * * *
15641268 TAGTCCCTAC-GAACTTTTGCATGAAAGATAGTCTCTGCGAACTTTTGCTTAAAAGATAAAGA
1 TAGTCCCTGCAGAA-TCTTGCATGAAAGATAGTCCCTACGGACTCTTGCTT----G--AAAGA
* ** * *
15641330 TAGTCCTTGCAGGCTCTTGCATGAAAGATAATCCCTACGGACTATTGCTTGAAAGA
1 TAGTCCCTGCAGAATCTTGCATGAAAGATAGTCCCTACGGACTCTTGCTTGAAAGA
* * * * * * * *
15641386 TAATCCCTGCGGACTCTTGTATTAATGATAGTCTCTATGGACTCTTGCTTGAAAGA
1 TAGTCCCTGCAGAATCTTGCATGAAAGATAGTCCCTACGGACTCTTGCTTGAAAGA
* * * *
15641442 TAGTCCCCGTAGACTTTTGCATGAAAGATAGTCCCTACGGACT
1 TAGTCCCTGCAGAATCTTGCATGAAAGATAGTCCCTACGGACT
15641485 GTCATAACTT
Statistics
Matches: 259, Mismatches: 59, Indels: 21
0.76 0.17 0.06
Matches are distributed among these distances:
54 2 0.01
55 26 0.10
56 182 0.70
57 3 0.01
58 1 0.00
60 1 0.00
62 43 0.17
63 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (56 bp):
TAGTCCCTGCAGAATCTTGCATGAAAGATAGTCCCTACGGACTCTTGCTTGAAAGA
Found at i:15641483 original size:84 final size:82
Alignment explanation
Indices: 15641112--15641484 Score: 338
Period size: 84 Copynumber: 4.4 Consensus size: 82
15641102 AGTTCCTGCG
* * * *
15641112 GACTCTTGCTTGAAAGATAG-CCCTACGGACTCTTGCATGAAAGATGGTCCTTGTGAACTCTTGC
1 GACTCTTGCTTGAAAGATAGTCCCTGCGGACTCTTGCATTAAAGATAGTCCTTGAG-ACTCTTGC
*
15641176 TTGAAAGATAGTCTCTAC
65 TTGAAAGATAGTCCCTAC
* ** * * *
15641194 GGACTCCTGCTTGAAAGATAGTCATTGCAGAATCTTGCATAAAAGATAGTCCTTGCAGACTCTTG
1 -GACTCTTGCTTGAAAGATAGTCCCTGCGGACTCTTGCATTAAAGATAGTCCTTG-AGACTCTTG
15641259 CTTGAAAGATAGTCCCTAC
64 CTTGAAAGATAGTCCCTAC
* * * * * * *
15641278 GAACTTTTGCATGAAAGATAGTCTCTGCGAACTTTTGCTTAAAAGATAAAGATAGTCCTTGCAGG
1 G-ACTCTTGCTTGAAAGATAGTCCCTGCGGACTCTTGC-----A-TTAAAGATAGTCCTTG-AGA
* *
15641343 CTCTTGCATGAAAGATAATCCCTAC
58 CTCTTGCTTGAAAGATAGTCCCTAC
* * * *
15641368 GGACTATTGCTTGAAAGATAATCCCTGCGGACTCTTGTATTAATGATAGTCTCTATG-GACTCTT
1 -GACTCTTGCTTGAAAGATAGTCCCTGCGGACTCTTGCATTAAAGATAGTC-CT-TGAGACTCTT
15641432 GCTTGAAAGATAGTCCCCGTA-
63 GCTTGAAAGATAGT-CCC-TAC
* * *
15641453 GACTTTTGCATGAAAGATAGTCCCTACGGACT
1 GACTCTTGCTTGAAAGATAGTCCCTGCGGACT
15641485 GTCATAACTT
Statistics
Matches: 236, Mismatches: 40, Indels: 27
0.78 0.13 0.09
Matches are distributed among these distances:
83 20 0.08
84 134 0.57
85 7 0.03
86 4 0.02
89 1 0.00
90 69 0.29
91 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (82 bp):
GACTCTTGCTTGAAAGATAGTCCCTGCGGACTCTTGCATTAAAGATAGTCCTTGAGACTCTTGCT
TGAAAGATAGTCCCTAC
Found at i:15641484 original size:28 final size:28
Alignment explanation
Indices: 15641101--15641484 Score: 286
Period size: 28 Copynumber: 13.5 Consensus size: 28
15641091 TACTTACAAT
* *
15641101 TAGTTCCTGCGGACTCTTGCTTGAAAGA
1 TAGTCCCTGCGGACTCTTGCATGAAAGA
*
15641129 TAG-CCCTACGGACTCTTGCATGAAAGA
1 TAGTCCCTGCGGACTCTTGCATGAAAGA
* * * * *
15641156 TGGTCCTTGTGAACTCTTGCTTGAAAGA
1 TAGTCCCTGCGGACTCTTGCATGAAAGA
* * * *
15641184 TAGTCTCTACGGACTCCTGCTTGAAAGA
1 TAGTCCCTGCGGACTCTTGCATGAAAGA
** * * *
15641212 TAGTCATTGCAGAATCTTGCATAAAAGA
1 TAGTCCCTGCGGACTCTTGCATGAAAGA
* * *
15641240 TAGTCCTTGCAGACTCTTGCTTGAAAGA
1 TAGTCCCTGCGGACTCTTGCATGAAAGA
* * *
15641268 TAGTCCCTACGAACTTTTGCATGAAAGA
1 TAGTCCCTGCGGACTCTTGCATGAAAGA
* * * *
15641296 TAGTCTCTGCGAACTTTTGCTTAAAAGATAAAGA
1 TAGTCCCTGCGGACTCTTGC----ATG--AAAGA
*
15641330 TAGTCCTTGCAGG-CTCTTGCATGAAAGA
1 TAGTCCCTGC-GGACTCTTGCATGAAAGA
* * * *
15641358 TAATCCCTACGGACTATTGCTTGAAAGA
1 TAGTCCCTGCGGACTCTTGCATGAAAGA
* * * *
15641386 TAATCCCTGCGGACTCTTGTATTAATGA
1 TAGTCCCTGCGGACTCTTGCATGAAAGA
* ** *
15641414 TAGTCTCTATGGACTCTTGCTTGAAAGA
1 TAGTCCCTGCGGACTCTTGCATGAAAGA
* ** *
15641442 TAGTCCCCGTAGACTTTTGCATGAAAGA
1 TAGTCCCTGCGGACTCTTGCATGAAAGA
*
15641470 TAGTCCCTACGGACT
1 TAGTCCCTGCGGACT
15641485 GTCATAACTT
Statistics
Matches: 276, Mismatches: 71, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
27 25 0.09
28 227 0.82
30 2 0.01
32 2 0.01
34 19 0.07
35 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (28 bp):
TAGTCCCTGCGGACTCTTGCATGAAAGA
Found at i:15647472 original size:11 final size:11
Alignment explanation
Indices: 15647453--15647486 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
15647443 AATGTAGTAG
15647453 TTCTTTTTTTC
1 TTCTTTTTTTC
*
15647464 TTTTTTTTTTC
1 TTCTTTTTTTC
*
15647475 TTCTTCTTTTC
1 TTCTTTTTTTC
15647486 T
1 T
15647487 GGTGAAAATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (11 bp):
TTCTTTTTTTC
Found at i:15650110 original size:13 final size:13
Alignment explanation
Indices: 15650092--15650121 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
15650082 TAAATCTCAC
15650092 TAATTAATACTAT
1 TAATTAATACTAT
*
15650105 TAATTAATATTAT
1 TAATTAATACTAT
15650118 TAAT
1 TAAT
15650122 GTGTTATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (13 bp):
TAATTAATACTAT
Found at i:15653774 original size:27 final size:27
Alignment explanation
Indices: 15653736--15653790 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
15653726 TGCAGGAATG
15653736 AGCAGGAATGAGAAAAATATGAAGCGT
1 AGCAGGAATGAGAAAAATATGAAGCGT
15653763 AGCAGGAATGAGAAAAATATGAAGCGT
1 AGCAGGAATGAGAAAAATATGAAGCGT
15653790 A
1 A
15653791 TCGCATTTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.49, C:0.07, G:0.29, T:0.15
Consensus pattern (27 bp):
AGCAGGAATGAGAAAAATATGAAGCGT
Found at i:15655554 original size:17 final size:17
Alignment explanation
Indices: 15655531--15655568 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
15655521 TTCCATTTTC
15655531 TCTTTTTCTTCTTCTTCT
1 TCTTTTTC-TCTTCTTCT
*
15655549 TCTTTTTCTCTTCTTTT
1 TCTTTTTCTCTTCTTCT
15655566 TCT
1 TCT
15655569 ATTGCCAGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (17 bp):
TCTTTTTCTCTTCTTCT
Found at i:15655560 original size:20 final size:20
Alignment explanation
Indices: 15655528--15655568 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
15655518 TCTTTCCATT
15655528 TTCTCTTTTTCTTCTTCTTC
1 TTCTCTTTTTCTTCTTCTTC
*
15655548 TTCT-TTTTCTCTTCTTTTTC
1 TTCTCTTTT-TCTTCTTCTTC
15655568 T
1 T
15655569 ATTGCCAGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (20 bp):
TTCTCTTTTTCTTCTTCTTC
Found at i:15656615 original size:16 final size:16
Alignment explanation
Indices: 15656582--15656615 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
15656572 GATGAATGTT
* *
15656582 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
15656598 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
15656614 AA
1 AA
15656616 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:15661396 original size:16 final size:16
Alignment explanation
Indices: 15661363--15661396 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
15661353 GGAGATTGTT
* *
15661363 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
15661379 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
15661395 AA
1 AA
15661397 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:15664091 original size:22 final size:22
Alignment explanation
Indices: 15664066--15664118 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
15664056 ATATTCAAAC
* *
15664066 AATAACAATAAAATAATAGTAA
1 AATAACAACAAAATAATAGCAA
* **
15664088 AATAGCAACAAAATTGTAGCAA
1 AATAACAACAAAATAATAGCAA
15664110 AATAACAAC
1 AATAACAAC
15664119 GAAACAACAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.62, C:0.11, G:0.08, T:0.19
Consensus pattern (22 bp):
AATAACAACAAAATAATAGCAA
Found at i:15664549 original size:36 final size:35
Alignment explanation
Indices: 15664499--15664570 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 35
15664489 TAATTTTTTT
15664499 TCTTCCGATAAAAAATATTCCCACTCAACTCCTTG
1 TCTTCCGATAAAAAATATTCCCACTCAACTCCTTG
*
15664534 TNCTTCCGATCAAAAATATTCCCACTCAACTCCTTG
1 T-CTTCCGATAAAAAATATTCCCACTCAACTCCTTG
15664570 T
1 T
15664571 TCCAGCTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
35 1 0.03
36 34 0.97
ACGTcount: A:0.29, C:0.32, G:0.06, T:0.32
Consensus pattern (35 bp):
TCTTCCGATAAAAAATATTCCCACTCAACTCCTTG
Found at i:15665705 original size:30 final size:30
Alignment explanation
Indices: 15665669--15665729 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
15665659 TTACACATAC
15665669 ATAGTCAGTTACTTACTCAGGATTAATGTA
1 ATAGTCAGTTACTTACTCAGGATTAATGTA
15665699 ATAGTCAGTTACTTACTCAGGATTAATGTA
1 ATAGTCAGTTACTTACTCAGGATTAATGTA
15665729 A
1 A
15665730 GTCACGCTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.36
Consensus pattern (30 bp):
ATAGTCAGTTACTTACTCAGGATTAATGTA
Found at i:15673360 original size:15 final size:16
Alignment explanation
Indices: 15673340--15673369 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
15673330 GAAAATTGCC
15673340 AAAATGGG-CTAAATA
1 AAAATGGGACTAAATA
15673355 AAAATGGGACTAAAT
1 AAAATGGGACTAAAT
15673370 TGGAATATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.53, C:0.07, G:0.20, T:0.20
Consensus pattern (16 bp):
AAAATGGGACTAAATA
Found at i:15675956 original size:3 final size:3
Alignment explanation
Indices: 15675948--15676000 Score: 56
Period size: 3 Copynumber: 17.7 Consensus size: 3
15675938 AAGCACTATC
* *
15675948 TAT TAT TAT TAT TAT TAT TAT TAT TA- GAT TCAT T-T TATT TAT TCT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TA-T TAT TAT
15675993 TAT TAT TA
1 TAT TAT TA
15676001 CATTCATTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
2 3 0.07
3 33 0.79
4 6 0.14
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:15677723 original size:43 final size:43
Alignment explanation
Indices: 15677675--15677779 Score: 176
Period size: 43 Copynumber: 2.4 Consensus size: 43
15677665 TAACGATATG
* *
15677675 TGATTATGTGTAAGACCATGTTTAGGACATTGGCATCATTATT
1 TGATTACGTGTAAGACCATGTCTAGGACATTGGCATCATTATT
15677718 TGATTACGTGTAAGACCATGTCTAGGACATTGGCATCATTATT
1 TGATTACGTGTAAGACCATGTCTAGGACATTGGCATCATTATT
15677761 TGACTT-CGTGTAAGACCAT
1 TGA-TTACGTGTAAGACCAT
15677780 AGCTGAGCTA
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
43 57 0.97
44 2 0.03
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36
Consensus pattern (43 bp):
TGATTACGTGTAAGACCATGTCTAGGACATTGGCATCATTATT
Found at i:15680197 original size:40 final size:40
Alignment explanation
Indices: 15680144--15680239 Score: 124
Period size: 40 Copynumber: 2.4 Consensus size: 40
15680134 CTATCTCGGT
* *
15680144 ATCGCACAGTTAGTGCCT-TGTATAGCCAAAGCTATTCCA
1 ATCGCACATTTAGTGCCTATGTATAACCAAAGCTATTCCA
* **
15680183 ATTCGCACATTTAGTG-CTATTTATAACCAAAGCTATTTGA
1 A-TCGCACATTTAGTGCCTATGTATAACCAAAGCTATTCCA
15680223 ATCGCACATTTAGTGCC
1 ATCGCACATTTAGTGCC
15680240 AAACATAGTC
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
39 17 0.35
40 32 0.65
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (40 bp):
ATCGCACATTTAGTGCCTATGTATAACCAAAGCTATTCCA
Found at i:15684642 original size:48 final size:49
Alignment explanation
Indices: 15684532--15684657 Score: 155
Period size: 48 Copynumber: 2.5 Consensus size: 49
15684522 TGTCTTCGAC
** * *
15684532 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATATCTAAT
* *
15684584 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATCTAAT
*
15684632 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
15684658 CTGTCCTGTC
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
48 36 0.55
52 30 0.45
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (49 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATCTAAT
Found at i:15687704 original size:24 final size:24
Alignment explanation
Indices: 15687677--15687722 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
15687667 GAATTTAACA
15687677 TTCAAAT-CAGCACACATAGTGCCT
1 TTCAAATAC-GCACACATAGTGCCT
* *
15687701 TTCAACTACGCACACGTAGTGC
1 TTCAAATACGCACACATAGTGC
15687723 TAGTATCGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 18 0.95
25 1 0.05
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.24
Consensus pattern (24 bp):
TTCAAATACGCACACATAGTGCCT
Found at i:15695172 original size:24 final size:24
Alignment explanation
Indices: 15695145--15695190 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
15695135 GAATTTAACA
15695145 TTCAAAT-CAGCACACATAGTGCCT
1 TTCAAATAC-GCACACATAGTGCCT
* *
15695169 TTCAACTACGCACACGTAGTGC
1 TTCAAATACGCACACATAGTGC
15695191 TAGTATCGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 18 0.95
25 1 0.05
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.24
Consensus pattern (24 bp):
TTCAAATACGCACACATAGTGCCT
Found at i:15702941 original size:30 final size:30
Alignment explanation
Indices: 15702907--15702967 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
15702897 TCCTTTACTC
*
15702907 AAACTTTT-CAAAAATTACATTTTTGCCCCT
1 AAACTTTTGC-AAAATTACACTTTTGCCCCT
* *
15702937 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACACTTTTGCCCCT
15702967 A
1 A
15702968 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.05, T:0.41
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACACTTTTGCCCCT
Found at i:15713150 original size:98 final size:96
Alignment explanation
Indices: 15713005--15713195 Score: 269
Period size: 98 Copynumber: 2.0 Consensus size: 96
15712995 AGTTTTTTTA
15713005 TTTTTAATTAATAAATTTTTATCTATATAATAAAATAATAAATATGTAATTATATAATAAAAATA
1 TTTTTAATTAATAAATTTTTATCTATATAATAAAATAATAAATATGTAATTATATAATAAAAATA
*
15713070 TATT-TGATATATTTC-ATTATGTTAAAAATAT
66 T-TTATGATATA-TACGATTATGTTAAAAATAT
* * * * *
15713101 TTTTTAATTAATAACTCTTTTATTTATATAAATAAAATAATAAATATGTAGTTGTATAATGAAAA
1 TTTTTAATTAATAAAT-TTTTATCTATAT-AATAAAATAATAAATATGTAATTATATAATAAAAA
*
15713166 TATTTATTATATATACGATTATGTTAAAAA
64 TATTTATGATATATACGATTATGTTAAAAA
15713196 GGTAAAATTA
Statistics
Matches: 84, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
96 15 0.18
97 15 0.18
98 54 0.64
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.46
Consensus pattern (96 bp):
TTTTTAATTAATAAATTTTTATCTATATAATAAAATAATAAATATGTAATTATATAATAAAAATA
TTTATGATATATACGATTATGTTAAAAATAT
Found at i:15716640 original size:77 final size:75
Alignment explanation
Indices: 15716504--15716646 Score: 205
Period size: 77 Copynumber: 1.9 Consensus size: 75
15716494 CTATAAAAAT
* ** *
15716504 ATATATTTTAATAAATAACTACATATTTATTATTTTATTTATATAAATAATGGAGTTATTATATT
1 ATATATTTTAATAAATAACTACATATTTATTATCTTATTTATATAAATAAAAGAATTATTA-ATT
15716569 AACATAATGAA
65 AACATAATGAA
* * *
15716580 ATATATTTTCATTATATAATTACATATTTATTATCTTATTTATATAAATAAAAGAATTATTAATT
1 ATATATTTT-AATAAATAACTACATATTTATTATCTTATTTATATAAATAAAAGAATTATTAATT
15716645 AA
65 AA
15716647 AAATAAAATA
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
76 14 0.24
77 45 0.76
ACGTcount: A:0.45, C:0.04, G:0.03, T:0.48
Consensus pattern (75 bp):
ATATATTTTAATAAATAACTACATATTTATTATCTTATTTATATAAATAAAAGAATTATTAATTA
ACATAATGAA
Found at i:15718443 original size:21 final size:22
Alignment explanation
Indices: 15718414--15718470 Score: 82
Period size: 21 Copynumber: 2.7 Consensus size: 22
15718404 AGCCTATTCT
*
15718414 AAATTAATAAAATAAA-AATAA
1 AAATAAATAAAATAAATAATAA
15718435 AAATAAAT-AAATAAATAATAA
1 AAATAAATAAAATAAATAATAA
*
15718456 AACTAAATAAAATAA
1 AAATAAATAAAATAA
15718471 TATCTTCTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
20 7 0.22
21 19 0.59
22 6 0.19
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (22 bp):
AAATAAATAAAATAAATAATAA
Found at i:15718733 original size:6 final size:6
Alignment explanation
Indices: 15718722--15718748 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
15718712 TAATTTTAGA
15718722 TTTTGT TTTTGT TTTTGT TTTTGT TTT
1 TTTTGT TTTTGT TTTTGT TTTTGT TTT
15718749 AATTCTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (6 bp):
TTTTGT
Found at i:15719804 original size:130 final size:132
Alignment explanation
Indices: 15719631--15719884 Score: 368
Period size: 130 Copynumber: 1.9 Consensus size: 132
15719621 AAAACACGAA
* * * * *
15719631 TGAAATTTCAAAGGAATATTCGATCATTTTGAACAAGCGGGAAATCGCAACACAGCACGATAGGG
1 TGAAATTCCAAAGGAACATTCGATCATTTTGAACAAACAGGAAATCGCAACACAGCACGATAGGA
*
15719696 CACTATTCCCCGAATTGCCAAACACCGAACA-TACCTTAG-TTTTGAAGAATTTTTAAAGACATG
66 CACGATTCCCCGAATTGCCAAACACCGAACATTACCTTAGTTTTTGAAGAATTTTTAAAGACATG
15719759 AG
131 AG
** *
15719761 TGAAATTCCAAAGGAACATTCGATTGTTTTGAACAAACAGGAAATCGCAACCCAGCACGATAGGA
1 TGAAATTCCAAAGGAACATTCGATCATTTTGAACAAACAGGAAATCGCAACACAGCACGATAGGA
* * * * *
15719826 CACGATTCCCCGAATTGCTAAACATCGAACATTGCCTTCGTTTTTTAAGAATTTTTAAA
66 CACGATTCCCCGAATTGCCAAACACCGAACATTACCTTAGTTTTTGAAGAATTTTTAAA
15719885 TGGATAATGA
Statistics
Matches: 108, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
130 85 0.79
131 6 0.06
132 17 0.16
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.26
Consensus pattern (132 bp):
TGAAATTCCAAAGGAACATTCGATCATTTTGAACAAACAGGAAATCGCAACACAGCACGATAGGA
CACGATTCCCCGAATTGCCAAACACCGAACATTACCTTAGTTTTTGAAGAATTTTTAAAGACATG
AG
Found at i:15720150 original size:21 final size:21
Alignment explanation
Indices: 15720125--15720168 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
15720115 AATGACATCA
15720125 AAAAATAAATGAATATGGTAC
1 AAAAATAAATGAATATGGTAC
15720146 AAAAATAAATGAATATGGTAC
1 AAAAATAAATGAATATGGTAC
15720167 AA
1 AA
15720169 CCAATATACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.59, C:0.05, G:0.14, T:0.23
Consensus pattern (21 bp):
AAAAATAAATGAATATGGTAC
Found at i:15722683 original size:21 final size:21
Alignment explanation
Indices: 15722658--15722709 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 21
15722648 TATAATTTCA
15722658 ATAAATA-AAATTATAAA-AAT
1 ATAAATATAAATTA-AAAGAAT
15722678 ATTAAATATTAAATTAAAAGAAT
1 A-TAAATA-TAAATTAAAAGAAT
15722701 ATAAATATA
1 ATAAATATA
15722710 TATTTTTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
20 1 0.04
21 8 0.29
22 9 0.32
23 10 0.36
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (21 bp):
ATAAATATAAATTAAAAGAAT
Found at i:15722691 original size:23 final size:22
Alignment explanation
Indices: 15722658--15722708 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
15722648 TATAATTTCA
15722658 ATAAATA--AAATTATAAA-AAT
1 ATAAATATTAAATTA-AAAGAAT
15722678 ATTAAATATTAAATTAAAAGAAT
1 A-TAAATATTAAATTAAAAGAAT
15722701 ATAAATAT
1 ATAAATAT
15722709 ATATTTTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
20 1 0.04
21 6 0.22
22 10 0.37
23 10 0.37
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (22 bp):
ATAAATATTAAATTAAAAGAAT
Found at i:15726534 original size:28 final size:28
Alignment explanation
Indices: 15726494--15726549 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
15726484 TGGGTTGTTG
15726494 ACTCGAACGAAGTGGTCATACTATAATT
1 ACTCGAACGAAGTGGTCATACTATAATT
15726522 ACTCGAACGAAGTGGTCATACTATAATT
1 ACTCGAACGAAGTGGTCATACTATAATT
15726550 TCTCCCTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.29
Consensus pattern (28 bp):
ACTCGAACGAAGTGGTCATACTATAATT
Found at i:15726975 original size:13 final size:13
Alignment explanation
Indices: 15726957--15726985 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
15726947 CATACGGCTA
15726957 TGTTACACGCCCG
1 TGTTACACGCCCG
15726970 TGTTACACGCCCG
1 TGTTACACGCCCG
15726983 TGT
1 TGT
15726986 GCCAGGCCGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.14, C:0.34, G:0.24, T:0.28
Consensus pattern (13 bp):
TGTTACACGCCCG
Found at i:15727733 original size:23 final size:22
Alignment explanation
Indices: 15727707--15727779 Score: 60
Period size: 23 Copynumber: 3.2 Consensus size: 22
15727697 GGATCTAGAG
15727707 GATGCCCTGCTAGGGATAGATAA
1 GATGCCCTGC-AGGGATAGATAA
** *
15727730 GATG--CTGCAGATGGATCTAGAA
1 GATGCCCTGCAG--GGATAGATAA
*
15727752 TATGCCCTGCCAGGGATAGATAA
1 GATGCCCTG-CAGGGATAGATAA
15727775 GATGC
1 GATGC
15727780 TTTCTACATT
Statistics
Matches: 37, Mismatches: 8, Indels: 10
0.67 0.15 0.18
Matches are distributed among these distances:
20 2 0.05
21 4 0.11
22 10 0.27
23 15 0.41
24 3 0.08
25 3 0.08
ACGTcount: A:0.30, C:0.18, G:0.30, T:0.22
Consensus pattern (22 bp):
GATGCCCTGCAGGGATAGATAA
Found at i:15727757 original size:45 final size:45
Alignment explanation
Indices: 15727690--15727780 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
15727680 GCAGTTCTTG
* *
15727690 TGCAGATGGATCTAGAGGATGCCCTGCTAGGGATAGATAAGATGC
1 TGCAGATGGATCTAGAAGATGCCCTGCCAGGGATAGATAAGATGC
*
15727735 TGCAGATGGATCTAGAATATGCCCTGCCAGGGATAGATAAGATGC
1 TGCAGATGGATCTAGAAGATGCCCTGCCAGGGATAGATAAGATGC
15727780 T
1 T
15727781 TTCTACATTA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.30, C:0.16, G:0.31, T:0.23
Consensus pattern (45 bp):
TGCAGATGGATCTAGAAGATGCCCTGCCAGGGATAGATAAGATGC
Found at i:15732684 original size:15 final size:14
Alignment explanation
Indices: 15732664--15732698 Score: 54
Period size: 13 Copynumber: 2.5 Consensus size: 14
15732654 ACACACGGTC
15732664 GTGTCACCTAGCTGT
1 GTGTCACC-AGCTGT
15732679 GTGTCA-CAGCTGT
1 GTGTCACCAGCTGT
15732692 GTGTCAC
1 GTGTCAC
15732699 ACATGGCTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 12 0.63
14 1 0.05
15 6 0.32
ACGTcount: A:0.14, C:0.26, G:0.29, T:0.31
Consensus pattern (14 bp):
GTGTCACCAGCTGT
Found at i:15733361 original size:21 final size:21
Alignment explanation
Indices: 15733326--15733374 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
15733316 ATAAATAAAA
*
15733326 TCATTCA-TGTCAATTCCTTG
1 TCATTCACTATCAATTCCTTG
*
15733346 TCATTCACTATCAATTTCTTG
1 TCATTCACTATCAATTCCTTG
15733367 TCATTCAC
1 TCATTCAC
15733375 AACTTCTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 7 0.27
21 19 0.73
ACGTcount: A:0.22, C:0.27, G:0.06, T:0.45
Consensus pattern (21 bp):
TCATTCACTATCAATTCCTTG
Found at i:15733573 original size:21 final size:21
Alignment explanation
Indices: 15733547--15733589 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
15733537 TGAATATGCC
15733547 AACAGAAGCTT-GTAAGAGCTG
1 AACAGAAG-TTCGTAAGAGCTG
15733568 AACAGAAGTTCGTAAGAGCTG
1 AACAGAAGTTCGTAAGAGCTG
15733589 A
1 A
15733590 TCCATCCAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 2 0.10
21 19 0.90
ACGTcount: A:0.40, C:0.14, G:0.28, T:0.19
Consensus pattern (21 bp):
AACAGAAGTTCGTAAGAGCTG
Found at i:15739289 original size:19 final size:22
Alignment explanation
Indices: 15739267--15739309 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
15739257 CTAATTTGAA
15739267 TATTA-TTTA-AATA-TATATT
1 TATTACTTTATAATACTATATT
15739286 TATTACTTTATAATACTATATT
1 TATTACTTTATAATACTATATT
15739308 TA
1 TA
15739310 AATTGAACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 5 0.24
20 4 0.19
21 4 0.19
22 8 0.38
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.56
Consensus pattern (22 bp):
TATTACTTTATAATACTATATT
Found at i:15740448 original size:11 final size:12
Alignment explanation
Indices: 15740421--15740454 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
15740411 CTTGGGCAAA
15740421 ATTTTAGACCAT
1 ATTTTAGACCAT
15740433 ATTTTAGACC-T
1 ATTTTAGACCAT
15740444 ATTTTTAGACC
1 A-TTTTAGACC
15740455 CATGCACACC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 2 0.10
12 19 0.90
ACGTcount: A:0.29, C:0.18, G:0.09, T:0.44
Consensus pattern (12 bp):
ATTTTAGACCAT
Found at i:15744734 original size:52 final size:52
Alignment explanation
Indices: 15744667--15744773 Score: 187
Period size: 52 Copynumber: 2.1 Consensus size: 52
15744657 GTGTTTAGCA
15744667 TAGGGATCACTTCACAACACAAGAAATTAATTTCATCATTTTGTTTGGTAAG
1 TAGGGATCACTTCACAACACAAGAAATTAATTTCATCATTTTGTTTGGTAAG
***
15744719 TAGGGATCACTTCACAACATGGGAAATTAATTTCATCATTTTGTTTGGTAAG
1 TAGGGATCACTTCACAACACAAGAAATTAATTTCATCATTTTGTTTGGTAAG
15744771 TAG
1 TAG
15744774 TTAATGATAC
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.36
Consensus pattern (52 bp):
TAGGGATCACTTCACAACACAAGAAATTAATTTCATCATTTTGTTTGGTAAG
Found at i:15749890 original size:29 final size:30
Alignment explanation
Indices: 15749795--15749896 Score: 79
Period size: 29 Copynumber: 3.5 Consensus size: 30
15749785 TGAATGTTAA
* *
15749795 GGAACGCCTTTGTGGCAAAACT-TAGGAAAT
1 GGAACGCCTTTGTGGCAAATCTCT-GGACAT
* * * * *
15749825 GTAA-GCATATGTGGCGAATCTCT-G-CAA
1 GGAACGCCTTTGTGGCAAATCTCTGGACAT
*
15749852 GGAAATGCCTTTGTGGCAAATCTCTGGACAT
1 GG-AACGCCTTTGTGGCAAATCTCTGGACAT
15749883 GGAA-GCCTTTGTGG
1 GGAACGCCTTTGTGG
15749897 TTATCTCTAA
Statistics
Matches: 55, Mismatches: 12, Indels: 11
0.71 0.15 0.14
Matches are distributed among these distances:
27 2 0.04
28 3 0.05
29 39 0.71
30 7 0.13
31 4 0.07
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.26
Consensus pattern (30 bp):
GGAACGCCTTTGTGGCAAATCTCTGGACAT
Found at i:15750353 original size:20 final size:20
Alignment explanation
Indices: 15750328--15750387 Score: 120
Period size: 20 Copynumber: 3.0 Consensus size: 20
15750318 AAGGAGATAG
15750328 AAGAAAATGGAGTTTTCGAA
1 AAGAAAATGGAGTTTTCGAA
15750348 AAGAAAATGGAGTTTTCGAA
1 AAGAAAATGGAGTTTTCGAA
15750368 AAGAAAATGGAGTTTTCGAA
1 AAGAAAATGGAGTTTTCGAA
15750388 TATGACTTAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.45, C:0.05, G:0.25, T:0.25
Consensus pattern (20 bp):
AAGAAAATGGAGTTTTCGAA
Found at i:15755973 original size:12 final size:12
Alignment explanation
Indices: 15755955--15755984 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
15755945 GACCGTATTA
15755955 AATTTTTTATAT
1 AATTTTTTATAT
*
15755967 TATTTTTTATAT
1 AATTTTTTATAT
15755979 AATTTT
1 AATTTT
15755985 AAAATATATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (12 bp):
AATTTTTTATAT
Found at i:15756461 original size:17 final size:17
Alignment explanation
Indices: 15756428--15756479 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 17
15756418 ACAAGTACTC
*
15756428 ATATTTA-TATTATAAA
1 ATATTTATTATTAAAAA
15756444 ATATTTATTATTAAAAA
1 ATATTTATTATTAAAAA
* * *
15756461 A-ATTTCTTTTTTAAAA
1 ATATTTATTATTAAAAA
15756477 ATA
1 ATA
15756480 AGTCACGTGA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
16 20 0.67
17 10 0.33
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (17 bp):
ATATTTATTATTAAAAA
Found at i:15758896 original size:45 final size:46
Alignment explanation
Indices: 15758832--15758924 Score: 170
Period size: 45 Copynumber: 2.0 Consensus size: 46
15758822 AATTATGAGA
15758832 TTAGTTCTAATGTGTTTTATAAACAC-TTTTTGTTTTTGAACTTTG
1 TTAGTTCTAATGTGTTTTATAAACACTTTTTTGTTTTTGAACTTTG
15758877 TTAGTTCTAATGTGTTTTATAAACACTTTTTTTGTTTTTGAACTTTG
1 TTAGTTCTAATGTGTTTTATAAACAC-TTTTTTGTTTTTGAACTTTG
15758924 T
1 T
15758925 CACGCCCAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
45 26 0.57
47 20 0.43
ACGTcount: A:0.22, C:0.09, G:0.13, T:0.57
Consensus pattern (46 bp):
TTAGTTCTAATGTGTTTTATAAACACTTTTTTGTTTTTGAACTTTG
Found at i:15764827 original size:41 final size:41
Alignment explanation
Indices: 15764782--15764889 Score: 135
Period size: 41 Copynumber: 2.6 Consensus size: 41
15764772 AACGCCGTAA
* * *
15764782 AAAAACCGAGCAATAGCGGCGTTTTTTATCCAAACGCCACT
1 AAAAACTGAGCAATAGCGGCGTTTTTGACCCAAACGCCACT
* * **
15764823 AAAAACTGAGCAATAGCGGCGTTTTTGGCCCAAATGCCGGT
1 AAAAACTGAGCAATAGCGGCGTTTTTGACCCAAACGCCACT
* *
15764864 AAAAATTGAGCAATAGCGGCGCTTTT
1 AAAAACTGAGCAATAGCGGCGTTTTT
15764890 AGAAAAACGC
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 58 1.00
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.23
Consensus pattern (41 bp):
AAAAACTGAGCAATAGCGGCGTTTTTGACCCAAACGCCACT
Found at i:15765709 original size:13 final size:14
Alignment explanation
Indices: 15765686--15765718 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
15765676 TTAGGATATA
*
15765686 GGTTTATAGTTTGG
1 GGTTTATAGTTTAG
15765700 GGTTTA-AGTTTAG
1 GGTTTATAGTTTAG
15765713 GGTTTA
1 GGTTTA
15765719 CTGTTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.18, C:0.00, G:0.33, T:0.48
Consensus pattern (14 bp):
GGTTTATAGTTTAG
Found at i:15766503 original size:38 final size:38
Alignment explanation
Indices: 15766452--15766528 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
15766442 GAAGAAGTTA
* *
15766452 GAACGAGTAGCCATGGAATCGTTGAGTGAGCTTGATAG
1 GAACGAGCAGCCATGGAATCGTCGAGTGAGCTTGATAG
15766490 GAACGAGCAGCCATGGAATCGTCGAGTGAGCTTGATAG
1 GAACGAGCAGCCATGGAATCGTCGAGTGAGCTTGATAG
15766528 G
1 G
15766529 CTGCTCTTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.29, C:0.16, G:0.35, T:0.21
Consensus pattern (38 bp):
GAACGAGCAGCCATGGAATCGTCGAGTGAGCTTGATAG
Found at i:15767175 original size:18 final size:18
Alignment explanation
Indices: 15767152--15767187 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
15767142 TGTTTAAGTA
15767152 AATAAATGATTTGCTATT
1 AATAAATGATTTGCTATT
*
15767170 AATAAATTATTTGCTATT
1 AATAAATGATTTGCTATT
15767188 TTTCTTAGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.39, C:0.06, G:0.08, T:0.47
Consensus pattern (18 bp):
AATAAATGATTTGCTATT
Found at i:15769180 original size:18 final size:19
Alignment explanation
Indices: 15769143--15769181 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
15769133 AAAATATAAT
15769143 ATAAAAATAAATATTATTTA
1 ATAAAAAT-AATATTATTTA
*
15769163 ATAAAAAT-ATATTTTTTA
1 ATAAAAATAATATTATTTA
15769181 A
1 A
15769182 AGGTTATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 10 0.56
20 8 0.44
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
ATAAAAATAATATTATTTA
Found at i:15769311 original size:43 final size:43
Alignment explanation
Indices: 15769179--15769324 Score: 158
Period size: 42 Copynumber: 3.4 Consensus size: 43
15769169 ATATATTTTT
* * *
15769179 TAAAGGTTATATTCTTTAGCGGCGTTTGTGAGAAAA-GCGCCGT
1 TAAAGGTCATATTCTTTAGCGGCGTTTGTGA-AAAAGGTGCCGC
* * * *
15769222 TAAAGGT-TTATTCTATAGCGGCGTTTGTAAAAAAGCGT--TGC
1 TAAAGGTCATATTCTTTAGCGGCGTTTGTGAAAAAG-GTGCCGC
15769263 TAAAGGTCATAGTT-TTTAGCGGCGTTTGTGAAAAAGGTGCCGC
1 TAAAGGTCATA-TTCTTTAGCGGCGTTTGTGAAAAAGGTGCCGC
*
15769306 TAAAGGTCATAGTCTTTAG
1 TAAAGGTCATATTCTTTAG
15769325 TGGCATTTTC
Statistics
Matches: 85, Mismatches: 11, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
41 14 0.16
42 43 0.51
43 28 0.33
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (43 bp):
TAAAGGTCATATTCTTTAGCGGCGTTTGTGAAAAAGGTGCCGC
Found at i:15769348 original size:43 final size:42
Alignment explanation
Indices: 15769179--15769353 Score: 174
Period size: 43 Copynumber: 4.1 Consensus size: 42
15769169 ATATATTTTT
* * *
15769179 TAAAGGTTATATTCTTTAGCGGCGTTTGTGAGAAAAGCGCCGT
1 TAAAGGTCATAGTCTTTAGCGGCGTTTGTGA-AAAAGCGCCGC
* * * * **
15769222 TAAAGGT-TTATTCTATAGCGGCGTTTGTAAAAAAGCGTTGC
1 TAAAGGTCATAGTCTTTAGCGGCGTTTGTGAAAAAGCGCCGC
* *
15769263 TAAAGGTCATAGTTTTTAGCGGCGTTTGTGAAAAAGGTGCCGC
1 TAAAGGTCATAGTCTTTAGCGGCGTTTGTGAAAAA-GCGCCGC
* * *
15769306 TAAAGGTCATAGTCTTTAGTGGCATTT-TCGGGAAAAGCGCCGC
1 TAAAGGTCATAGTCTTTAGCGGCGTTTGT--GAAAAAGCGCCGC
15769349 TAAAG
1 TAAAG
15769354 CGTTTTCTTA
Statistics
Matches: 109, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
41 15 0.14
42 43 0.39
43 46 0.42
44 5 0.05
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (42 bp):
TAAAGGTCATAGTCTTTAGCGGCGTTTGTGAAAAAGCGCCGC
Found at i:15774198 original size:25 final size:26
Alignment explanation
Indices: 15774148--15774203 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 26
15774138 CTTTTTCTTT
* **
15774148 TCTTTTCATTTTTAGATTAGGTTTTA
1 TCTTTTCATTTTTAGAATAGAATTTA
15774174 TCTTTTCA-TTTTAGAATAGAATTTA
1 TCTTTTCATTTTTAGAATAGAATTTA
15774199 T-TTTT
1 TCTTTT
15774204 GTTGTTTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 4 0.15
25 15 0.56
26 8 0.30
ACGTcount: A:0.23, C:0.07, G:0.09, T:0.61
Consensus pattern (26 bp):
TCTTTTCATTTTTAGAATAGAATTTA
Found at i:15779576 original size:19 final size:20
Alignment explanation
Indices: 15779549--15779586 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
15779539 TAGAATTATA
15779549 TTTATATAAGATAA-TAAAAT
1 TTTATATAA-ATAATTAAAAT
15779569 TTTA-ATAAATAATTAAAA
1 TTTATATAAATAATTAAAA
15779587 ATACCTTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 4 0.24
19 9 0.53
20 4 0.24
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (20 bp):
TTTATATAAATAATTAAAAT
Found at i:15784107 original size:27 final size:27
Alignment explanation
Indices: 15784069--15784121 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
15784059 GTTCTCCTGT
15784069 AAAAAAAAAATCAAGTTAGGATCAATA
1 AAAAAAAAAATCAAGTTAGGATCAATA
15784096 AAAAAAAAAATCAAGTTAGGATCAAT
1 AAAAAAAAAATCAAGTTAGGATCAAT
15784122 TCTGCAGTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.62, C:0.08, G:0.11, T:0.19
Consensus pattern (27 bp):
AAAAAAAAAATCAAGTTAGGATCAATA
Found at i:15789451 original size:3 final size:3
Alignment explanation
Indices: 15789445--15789566 Score: 244
Period size: 3 Copynumber: 40.7 Consensus size: 3
15789435 AGGTATAGAC
15789445 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
15789493 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
15789541 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
15789567 AGATTTGAGA
Statistics
Matches: 119, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 119 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:15790044 original size:21 final size:21
Alignment explanation
Indices: 15790003--15790064 Score: 60
Period size: 20 Copynumber: 3.1 Consensus size: 21
15789993 ATTTAGTCAT
* *
15790003 ATAATA-AA-TTATTAATATA
1 ATAATATAATTTATTATTTTA
15790022 ATAATATAATTTATTATTTTA
1 ATAATATAATTTATTATTTTA
*
15790043 ATAA-ACT-ATTTAATATTTTA
1 ATAATA-TAATTTATTATTTTA
15790063 AT
1 AT
15790065 TTTATTTTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
19 6 0.16
20 17 0.46
21 14 0.38
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (21 bp):
ATAATATAATTTATTATTTTA
Found at i:15804246 original size:3 final size:3
Alignment explanation
Indices: 15804238--15804289 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
15804228 AAAAAGAAAG
15804238 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
15804286 ATA A
1 ATA A
15804290 AAAACTCAAT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:15804442 original size:17 final size:17
Alignment explanation
Indices: 15804420--15804452 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
15804410 ATAAAAAATT
15804420 AAAATTTAAAATATAAA
1 AAAATTTAAAATATAAA
15804437 AAAATTTAAAATATAA
1 AAAATTTAAAATATAA
15804453 GTATAAGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
AAAATTTAAAATATAAA
Found at i:15804448 original size:7 final size:6
Alignment explanation
Indices: 15804382--15804437 Score: 58
Period size: 7 Copynumber: 8.7 Consensus size: 6
15804372 GAAATAGCAA
* *
15804382 AAAATT AAAATT AAAATT AAAATAA AAAATAA AAAATT AAAATTT AAAATAT
1 AAAATT AAAATT AAAATT AAAAT-T AAAAT-T AAAATT AAAA-TT AAAAT-T
15804434 AAAA
1 AAAA
15804438 AAATTTAAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
6 22 0.49
7 23 0.51
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (6 bp):
AAAATT
Found at i:15804458 original size:23 final size:23
Alignment explanation
Indices: 15804394--15804452 Score: 79
Period size: 20 Copynumber: 2.7 Consensus size: 23
15804384 AATTAAAATT
15804394 AAAATTAAAATA-AAAA-AT-AA
1 AAAATTAAAATATAAAATATAAA
*
15804414 AAAATTAAAATTTAAAATATAAA
1 AAAATTAAAATATAAAATATAAA
15804437 AAAATTTAAAATATAA
1 AAAA-TTAAAATATAA
15804453 GTATAAGAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 11 0.33
21 4 0.12
22 2 0.06
23 6 0.18
24 10 0.30
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (23 bp):
AAAATTAAAATATAAAATATAAA
Found at i:15804468 original size:23 final size:21
Alignment explanation
Indices: 15804394--15804468 Score: 71
Period size: 23 Copynumber: 3.4 Consensus size: 21
15804384 AATTAAAATT
*
15804394 AAAATTAAAATA-AAAAATAA
1 AAAATTAAAATATAAATATAA
*
15804414 AAAATTAAAATTTAAAATATAAA
1 AAAATTAAAATAT-AAATAT-AA
*
15804437 AAAATTTAAAATATAAGTATAA
1 AAAA-TTAAAATATAAATATAA
15804459 GAATAATTAA
1 -AA-AATTAA
15804469 TTAATTAATT
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
20 11 0.24
22 7 0.16
23 17 0.38
24 10 0.22
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (21 bp):
AAAATTAAAATATAAATATAA
Found at i:15804698 original size:30 final size:30
Alignment explanation
Indices: 15804657--15804713 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
15804647 ATGTGAGATC
*
15804657 CCACACGCCCGTGTGG-CTAGGCCGTGTGCT
1 CCACACACCCGTGTGGTC-AGGCCGTGTGCT
15804687 CCACACACCCGTGTGGTCAGGCCGTGT
1 CCACACACCCGTGTGGTCAGGCCGTGT
15804714 AACTCTCTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 24 0.96
31 1 0.04
ACGTcount: A:0.12, C:0.37, G:0.32, T:0.19
Consensus pattern (30 bp):
CCACACACCCGTGTGGTCAGGCCGTGTGCT
Found at i:15817101 original size:12 final size:12
Alignment explanation
Indices: 15817089--15817128 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
15817079 ATTTGTATCG
*
15817089 GCATTGACGTCG
1 GCATTGACGTCA
*
15817101 GCATTGATGTCA
1 GCATTGACGTCA
*
15817113 GCATCGACGTCA
1 GCATTGACGTCA
15817125 GCAT
1 GCAT
15817129 GGGAGCAAAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.25
Consensus pattern (12 bp):
GCATTGACGTCA
Found at i:15823454 original size:10 final size:11
Alignment explanation
Indices: 15823424--15823471 Score: 55
Period size: 10 Copynumber: 4.5 Consensus size: 11
15823414 ATAAAATATT
15823424 TATTAT-AAAA
1 TATTATAAAAA
15823434 TATTATAAAAA
1 TATTATAAAAA
15823445 TA-TATAAAAA
1 TATTATAAAAA
* *
15823455 AATTAGTCAAAA
1 TATTA-TAAAAA
15823467 TATTA
1 TATTA
15823472 GAAAGTTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
10 15 0.47
11 8 0.25
12 9 0.28
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (11 bp):
TATTATAAAAA
Found at i:15823607 original size:103 final size:103
Alignment explanation
Indices: 15823497--15823698 Score: 307
Period size: 103 Copynumber: 2.0 Consensus size: 103
15823487 GTTAAAAAAT
* *
15823497 GAGAATAACTTATATTAGGATCATCCT-AAAAAATATAATTTTTAGACACCAATAAAATAGTGCC
1 GAGAATAACTTATATTAGGATCATCCTAAAAAAACAT-ATTTTTAGACACCAATAAAATAGAGCC
*
15823561 ACATCATTAAATTTTAAAGATAACAAAGTATTATTATAC
65 ACATAATTAAATTTTAAAGATAACAAAGTATTATTATAC
* * * * *
15823600 GAGAATAACTTATATTAGGATTATCTTAAAAAAACATTTTTTTAGACACTAATAAAATAGAGTCA
1 GAGAATAACTTATATTAGGATCATCCTAAAAAAACATATTTTTAGACACCAATAAAATAGAGCCA
*
15823665 CGTAATTAAATTTTAAAGATAACAAAGTATTATT
66 CATAATTAAATTTTAAAGATAACAAAGTATTATT
15823699 GTACACCCAT
Statistics
Matches: 89, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
103 81 0.91
104 8 0.09
ACGTcount: A:0.47, C:0.10, G:0.09, T:0.34
Consensus pattern (103 bp):
GAGAATAACTTATATTAGGATCATCCTAAAAAAACATATTTTTAGACACCAATAAAATAGAGCCA
CATAATTAAATTTTAAAGATAACAAAGTATTATTATAC
Found at i:15827361 original size:26 final size:26
Alignment explanation
Indices: 15827323--15827380 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 26
15827313 CATGAAATTC
15827323 TTATCATGAAACATTTACCTAA-CTCA
1 TTATCATGAAACATTTACCTAACCT-A
*
15827349 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
15827375 TTATCA
1 TTATCA
15827381 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 28 0.93
27 2 0.07
ACGTcount: A:0.36, C:0.22, G:0.05, T:0.36
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:15829180 original size:3 final size:3
Alignment explanation
Indices: 15829172--15829251 Score: 115
Period size: 3 Copynumber: 26.7 Consensus size: 3
15829162 TGGGCAGTAA
* * * * *
15829172 AAG AAG AAG AAG AAG AAG TAC AAA AAG AAG AAG AAG ATG ATG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
15829220 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
15829252 AAGCTCTTTT
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 70 1.00
ACGTcount: A:0.65, C:0.01, G:0.30, T:0.04
Consensus pattern (3 bp):
AAG
Found at i:15829640 original size:12 final size:12
Alignment explanation
Indices: 15829625--15829649 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15829615 AATTAAGAAG
15829625 TGTATTATTATT
1 TGTATTATTATT
15829637 TGTATTATTATT
1 TGTATTATTATT
15829649 T
1 T
15829650 TTTAAAAGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (12 bp):
TGTATTATTATT
Found at i:15830830 original size:25 final size:23
Alignment explanation
Indices: 15830802--15830847 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
15830792 AATAAAAAAT
*
15830802 TTTAAAATATAATAAATTAAATACA
1 TTTAAAACATAA-AAA-TAAATACA
15830827 TTTAAAACATAAAAATAAATA
1 TTTAAAACATAAAAATAAATA
15830848 TTAAAATAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 3 0.15
25 11 0.55
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (23 bp):
TTTAAAACATAAAAATAAATACA
Found at i:15830907 original size:42 final size:43
Alignment explanation
Indices: 15830838--15830939 Score: 102
Period size: 42 Copynumber: 2.4 Consensus size: 43
15830828 TTAAAACATA
15830838 AAAATAAATATTAAAATAAGAAACAAA-TAAAAAAATAAGACT
1 AAAATAAATATTAAAATAAGAAACAAATTAAAAAAATAAGACT
* * * ** * *
15830880 AAAATAATTCTTAAAATAATACGCAAATTAAAAATATAATA--
1 AAAATAAATATTAAAATAAGAAACAAATTAAAAAAATAAGACT
15830921 AAAATAATTATATTAAAAT
1 AAAATAA--ATATTAAAAT
15830940 TAAAAATGAA
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
41 7 0.15
42 22 0.46
43 19 0.40
ACGTcount: A:0.66, C:0.05, G:0.03, T:0.26
Consensus pattern (43 bp):
AAAATAAATATTAAAATAAGAAACAAATTAAAAAAATAAGACT
Found at i:15830940 original size:32 final size:29
Alignment explanation
Indices: 15830904--15830978 Score: 80
Period size: 32 Copynumber: 2.5 Consensus size: 29
15830894 AATAATACGC
15830904 AAATTAAAAATATAATAAAAATAATTATATTA
1 AAATTAAAAATATAATAAAAAT-A-TA-ATTA
**
15830936 AAATTAAAAATGA-AATGTAAATATAATTA
1 AAATTAAAAAT-ATAATAAAAATATAATTA
*
15830965 AAAATAAAAATATA
1 AAATTAAAAATATA
15830979 TATATTTAGT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
28 1 0.03
29 15 0.39
30 2 0.05
31 1 0.03
32 18 0.47
33 1 0.03
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (29 bp):
AAATTAAAAATATAATAAAAATATAATTA
Found at i:15837437 original size:20 final size:21
Alignment explanation
Indices: 15837393--15837440 Score: 73
Period size: 20 Copynumber: 2.4 Consensus size: 21
15837383 GAGCCAGAGA
*
15837393 TATCGATACCAAATAAGAATG
1 TATCGATACCAAATAAGAAGG
15837414 -ATCGATACCAAATAA-AAGG
1 TATCGATACCAAATAAGAAGG
15837433 TATCGATA
1 TATCGATA
15837441 TTGGATTGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 3 0.12
20 22 0.88
ACGTcount: A:0.48, C:0.15, G:0.15, T:0.23
Consensus pattern (21 bp):
TATCGATACCAAATAAGAAGG
Found at i:15839433 original size:21 final size:20
Alignment explanation
Indices: 15839401--15839441 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
15839391 ATACATGAGT
15839401 ATTTTGATGTTTAATGATAG
1 ATTTTGATGTTTAATGATAG
*
15839421 ATTTTGAATGTTTGATGATAG
1 ATTTTG-ATGTTTAATGATAG
15839442 TGATACAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.29, C:0.00, G:0.22, T:0.49
Consensus pattern (20 bp):
ATTTTGATGTTTAATGATAG
Found at i:15851222 original size:19 final size:19
Alignment explanation
Indices: 15851200--15851236 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
15851190 AAGTATTGTG
15851200 TATTATGATATGTATGAGA
1 TATTATGATATGTATGAGA
* *
15851219 TATTCTGTTATGTATGAG
1 TATTATGATATGTATGAG
15851237 CATGTTTAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.30, C:0.03, G:0.22, T:0.46
Consensus pattern (19 bp):
TATTATGATATGTATGAGA
Found at i:15857893 original size:9 final size:8
Alignment explanation
Indices: 15857878--15857903 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
15857868 TTTAATATAT
15857878 TAAAAAAA
1 TAAAAAAA
15857886 TAAAAAAA
1 TAAAAAAA
15857894 TAAAAAAA
1 TAAAAAAA
15857902 TA
1 TA
15857904 TTTGTATTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (8 bp):
TAAAAAAA
Found at i:15858473 original size:11 final size:11
Alignment explanation
Indices: 15858459--15858489 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
15858449 TGTATTATAT
15858459 ATATAAAAATA
1 ATATAAAAATA
15858470 ATATAAAAATA
1 ATATAAAAATA
15858481 ATATAAAAA
1 ATATAAAAA
15858490 ATTAATACGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (11 bp):
ATATAAAAATA
Found at i:15858490 original size:13 final size:12
Alignment explanation
Indices: 15858457--15858496 Score: 55
Period size: 11 Copynumber: 3.2 Consensus size: 12
15858447 GATGTATTAT
15858457 ATATATAAAAATA
1 ATATA-AAAAATA
15858470 ATAT-AAAAATA
1 ATATAAAAAATA
15858481 ATATAAAAAATTA
1 ATATAAAAAA-TA
15858494 ATA
1 ATA
15858497 CGGGCGGGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 11 0.44
12 5 0.20
13 9 0.36
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (12 bp):
ATATAAAAAATA
Found at i:15865653 original size:14 final size:14
Alignment explanation
Indices: 15865634--15865661 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
15865624 TATTTCGAGG
15865634 CAAATGAGTATGAA
1 CAAATGAGTATGAA
15865648 CAAATGAGTATGAA
1 CAAATGAGTATGAA
15865662 AGTGACAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.21, T:0.21
Consensus pattern (14 bp):
CAAATGAGTATGAA
Found at i:15873961 original size:30 final size:29
Alignment explanation
Indices: 15873911--15873968 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 29
15873901 GCAACCCAAT
15873911 CTTTATTTTTATTTTTATTTATTATTTTC
1 CTTTATTTTTATTTTTATTTATTATTTTC
15873940 CTTTATTTTCT-TTTATTATTTATTATTTT
1 CTTTATTTT-TATTT-TTATTTATTATTTT
15873969 ATTTTAGTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 12 0.44
30 15 0.56
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (29 bp):
CTTTATTTTTATTTTTATTTATTATTTTC
Done.