Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 57 of 276
Found at i:17761462 original size:96 final size:96
Alignment explanation
Indices: 17761346--17761840 Score: 920
Period size: 96 Copynumber: 5.2 Consensus size: 96
17761336 CATGTTAACC
*
17761346 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
1 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCATACATAGTGCCAT
*
17761411 ATAAATCCGCACATATAGTGCCATACAAATT
66 ATAAATCCGCGCATATAGTGCCATACAAATT
17761442 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCATACATAGTGCCAT
1 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCATACATAGTGCCAT
17761507 ATAAATCCGCGCATATAGTGCCATACAAATT
66 ATAAATCCGCGCATATAGTGCCATACAAATT
17761538 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCATACATAGTGCCAT
1 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCATACATAGTGCCAT
17761603 ATAAATCCGCGCATATAGTGCCATACAAATT
66 ATAAATCCGCGCATATAGTGCCATACAAATT
17761634 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCATACATAGTGCCAT
1 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCATACATAGTGCCAT
17761699 ATAAATCCGCGCATATAGTGCCATACAAATT
66 ATAAATCCGCGCATATAGTGCCATACAAATT
* *
17761730 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCATACATATTGACAT
1 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCATACATAGTGCCAT
* *
17761795 -TCAAATCCGCACACATAGTGCCATACAAATT
66 AT-AAATCCGCGCATATAGTGCCATACAAATT
17761826 CGCACACATAGTGCC
1 CGCACACATAGTGCC
17761841 ATTCAAATTA
Statistics
Matches: 392, Mismatches: 6, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
95 1 0.00
96 391 1.00
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.26
Consensus pattern (96 bp):
CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCATACATAGTGCCAT
ATAAATCCGCGCATATAGTGCCATACAAATT
Found at i:17761865 original size:24 final size:24
Alignment explanation
Indices: 17761322--17761865 Score: 362
Period size: 24 Copynumber: 22.7 Consensus size: 24
17761312 GAAAGGAATT
* * *
17761322 CGCACCCATAGTGCCATGT-TAACC
1 CGCACACATAGTGCCAT-TCAAATC
*
17761346 CGCACACATAGTGCC-TT-AGTAATT
1 CGCACACATAGTGCCATTCA--AATC
* * * *
17761370 CACATACATATTGACATTCAAATC
1 CGCACACATAGTGCCATTCAAATC
17761394 CGCACACATAGTGCCATAT-AAATC
1 CGCACACATAGTGCCAT-TCAAATC
* * *
17761418 CGCACATATAGTGCCATACAAATT
1 CGCACACATAGTGCCATTCAAATC
*
17761442 CGCACACATAGTGCC-TT-AGTAATT
1 CGCACACATAGTGCCATTCA--AATC
* * * *
17761466 CACATACATATTGACATTCAAATC
1 CGCACACATAGTGCCATTCAAATC
*
17761490 CGCATACATAGTGCCATAT-AAATC
1 CGCACACATAGTGCCAT-TCAAATC
* * * *
17761514 CGCGCATATAGTGCCATACAAATT
1 CGCACACATAGTGCCATTCAAATC
*
17761538 CGCACACATAGTGCC-TT-AGTAATT
1 CGCACACATAGTGCCATTCA--AATC
* * * *
17761562 CACATACATATTGACATTCAAATC
1 CGCACACATAGTGCCATTCAAATC
*
17761586 CGCATACATAGTGCCATAT-AAATC
1 CGCACACATAGTGCCAT-TCAAATC
* * * *
17761610 CGCGCATATAGTGCCATACAAATT
1 CGCACACATAGTGCCATTCAAATC
*
17761634 CGCACACATAGTGCC-TT-AGTAATT
1 CGCACACATAGTGCCATTCA--AATC
* * * *
17761658 CACATACATATTGACATTCAAATC
1 CGCACACATAGTGCCATTCAAATC
*
17761682 CGCATACATAGTGCCATAT-AAATC
1 CGCACACATAGTGCCAT-TCAAATC
* * * *
17761706 CGCGCATATAGTGCCATACAAATT
1 CGCACACATAGTGCCATTCAAATC
*
17761730 CGCACACATAGTGCC-TT-AGTAATT
1 CGCACACATAGTGCCATTCA--AATC
* * * *
17761754 CACATACATATTGACATTCAAATC
1 CGCACACATAGTGCCATTCAAATC
* * *
17761778 CGCATACATATTGACATTCAAATC
1 CGCACACATAGTGCCATTCAAATC
* *
17761802 CGCACACATAGTGCCATACAAATT
1 CGCACACATAGTGCCATTCAAATC
*
17761826 CGCACACATAGTGCCATTCAAATT
1 CGCACACATAGTGCCATTCAAATC
* *
17761850 AGCATACATAGTGCCA
1 CGCACACATAGTGCCA
17761866 AAGTCATTTC
Statistics
Matches: 412, Mismatches: 80, Indels: 56
0.75 0.15 0.10
Matches are distributed among these distances:
22 5 0.01
23 5 0.01
24 383 0.93
25 14 0.03
26 5 0.01
ACGTcount: A:0.35, C:0.26, G:0.12, T:0.26
Consensus pattern (24 bp):
CGCACACATAGTGCCATTCAAATC
Found at i:17762313 original size:16 final size:16
Alignment explanation
Indices: 17762292--17762323 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
17762282 ATTACTTCAA
17762292 ATAAACACACATATAT
1 ATAAACACACATATAT
*
17762308 ATAAACACATATATAT
1 ATAAACACACATATAT
17762324 TTTTGTACAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (16 bp):
ATAAACACACATATAT
Found at i:17765203 original size:42 final size:41
Alignment explanation
Indices: 17765156--17765234 Score: 106
Period size: 42 Copynumber: 1.9 Consensus size: 41
17765146 ATGAACATAC
*
17765156 CGAAGCAATTATACTAACACATGTAA-TGCATCATCAGAAAAT
1 CGAAGCAATCATACTAACACA--TAAGTGCATCATCAGAAAAT
**
17765198 CGAAGCAATCATACTAGTACATAAGTGCATCATCAGA
1 CGAAGCAATCATACTAACACATAAGTGCATCATCAGA
17765235 TGAACCAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
40 3 0.09
41 12 0.36
42 18 0.55
ACGTcount: A:0.43, C:0.20, G:0.14, T:0.23
Consensus pattern (41 bp):
CGAAGCAATCATACTAACACATAAGTGCATCATCAGAAAAT
Found at i:17765265 original size:42 final size:42
Alignment explanation
Indices: 17765175--17765427 Score: 167
Period size: 42 Copynumber: 6.1 Consensus size: 42
17765165 TATACTAACA
* * *
17765175 CATGTAA-TGCATCATCAGA-AAATCGAAGC-AATCATACTAG
1 CATGTAAGTGCATCATCAGATGAACCAAAGCAAAT-ATACTAG
* ** *
17765215 TACATAAGTGCATCATCAGATGAACCAAAACAAATATACTAG
1 CATGTAAGTGCATCATCAGATGAACCAAAGCAAATATACTAG
* * * * ** ** * *
17765257 CGTTTAAGTGTATAATTGGATGAACTGAAGCAAATATATTGG
1 CATGTAAGTGCATCATCAGATGAACCAAAGCAAATATACTAG
* * *
17765299 CATGTAAGTGCATCATC-GAATGAACCAGAGCAATTATACTGG
1 CATGTAAGTGCATCATCAG-ATGAACCAAAGCAAATATACTAG
* * * * * * *
17765341 TATGTAAATGCA-CTATTAGATAAATCAAAGCAAACATACTGG
1 CATGTAAGTGCATC-ATCAGATGAACCAAAGCAAATATACTAG
* *
17765383 CACGTAAGTGCATCATCAAAT-AAGCCAAAGCAAATATACTAG
1 CATGTAAGTGCATCATCAGATGAA-CCAAAGCAAATATACTAG
17765425 CAT
1 CAT
17765428 AAGTAGTGCA
Statistics
Matches: 158, Mismatches: 47, Indels: 14
0.72 0.21 0.06
Matches are distributed among these distances:
40 4 0.03
41 16 0.10
42 133 0.84
43 5 0.03
ACGTcount: A:0.42, C:0.17, G:0.17, T:0.25
Consensus pattern (42 bp):
CATGTAAGTGCATCATCAGATGAACCAAAGCAAATATACTAG
Found at i:17765313 original size:84 final size:86
Alignment explanation
Indices: 17765194--17765425 Score: 219
Period size: 84 Copynumber: 2.7 Consensus size: 86
17765184 CATCATCAGA
* * * * * *
17765194 AAATCGAAGCAATCATACTAGTACATAAGTGCATCATCAGATGAACCAAAACAAATATACTAGCG
1 AAATCAAAGCAAACATACTGGCACGTAAGTGCATCATCAGATGAACCAAAGCAAATATACTAGCG
* * *
17765259 T-T-TAAGTGTA-TAATTGGAT
66 TATGTAAATGCACT-ATTAGAT
* * * * * * *
17765278 GAA-CTGAAGCAAATATATTGGCATGTAAGTGCATCATC-GAATGAACCAGAGCAATTATACT-G
1 AAATC-AAAGCAAACATACTGGCACGTAAGTGCATCATCAG-ATGAACCAAAGCAAATATACTAG
17765340 -GTATGTAAATGCACTATTAGAT
64 CGTATGTAAATGCACTATTAGAT
*
17765362 AAATCAAAGCAAACATACTGGCACGTAAGTGCATCATCAAAT-AAGCCAAAGCAAATATACTAGC
1 AAATCAAAGCAAACATACTGGCACGTAAGTGCATCATCAGATGAA-CCAAAGCAAATATACTAGC
17765426 ATAAGTAGTG
Statistics
Matches: 116, Mismatches: 22, Indels: 18
0.74 0.14 0.12
Matches are distributed among these distances:
82 2 0.02
83 6 0.05
84 105 0.91
85 3 0.03
ACGTcount: A:0.42, C:0.17, G:0.17, T:0.24
Consensus pattern (86 bp):
AAATCAAAGCAAACATACTGGCACGTAAGTGCATCATCAGATGAACCAAAGCAAATATACTAGCG
TATGTAAATGCACTATTAGAT
Found at i:17766734 original size:21 final size:20
Alignment explanation
Indices: 17766710--17766750 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
17766700 ATGAAATTTG
17766710 TGAATAT-ATATAAGCTATGGC
1 TGAATATGAT-TAAGCT-TGGC
17766731 TGAATATGATTAAGCTTGGC
1 TGAATATGATTAAGCTTGGC
17766751 CATTATACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.21
21 13 0.68
22 2 0.11
ACGTcount: A:0.34, C:0.10, G:0.22, T:0.34
Consensus pattern (20 bp):
TGAATATGATTAAGCTTGGC
Found at i:17771054 original size:23 final size:22
Alignment explanation
Indices: 17771027--17771077 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 22
17771017 TAAAATGCGT
*
17771027 TAAATATGGGGTAAAAATATGTA
1 TAAATAT-GGGTAAAAATATGCA
*
17771050 TAAATTATGGTTAAAAATATGCA
1 TAAA-TATGGGTAAAAATATGCA
17771073 TAAAT
1 TAAAT
17771078 TACGGTTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 1 0.04
23 21 0.84
24 3 0.12
ACGTcount: A:0.49, C:0.02, G:0.16, T:0.33
Consensus pattern (22 bp):
TAAATATGGGTAAAAATATGCA
Found at i:17771078 original size:23 final size:23
Alignment explanation
Indices: 17771038--17771084 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
17771028 AAATATGGGG
* *
17771038 TAAAAATATGTATAAATTATGGT
1 TAAAAATATGCATAAATTACGGT
17771061 TAAAAATATGCATAAATTACGGT
1 TAAAAATATGCATAAATTACGGT
17771084 T
1 T
17771085 TATCAAATAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.47, C:0.04, G:0.13, T:0.36
Consensus pattern (23 bp):
TAAAAATATGCATAAATTACGGT
Found at i:17778647 original size:14 final size:14
Alignment explanation
Indices: 17778628--17778666 Score: 78
Period size: 14 Copynumber: 2.8 Consensus size: 14
17778618 TCAAAACAAG
17778628 AATTAAGAACACAT
1 AATTAAGAACACAT
17778642 AATTAAGAACACAT
1 AATTAAGAACACAT
17778656 AATTAAGAACA
1 AATTAAGAACA
17778667 AGTCAAATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.59, C:0.13, G:0.08, T:0.21
Consensus pattern (14 bp):
AATTAAGAACACAT
Found at i:17779867 original size:20 final size:20
Alignment explanation
Indices: 17779839--17779887 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
17779829 TTACCACAAG
*
17779839 TATCAATACTCGTGATACGA
1 TATCGATACTCGTGATACGA
17779859 TATCGATACTCGTGATACGA
1 TATCGATACTCGTGATACGA
17779879 TATCGATAC
1 TATCGATAC
17779888 AAAATTATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (20 bp):
TATCGATACTCGTGATACGA
Found at i:17782064 original size:11 final size:11
Alignment explanation
Indices: 17782048--17782079 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
17782038 ACACAATTAA
17782048 ACATACATTTC
1 ACATACATTTC
17782059 ACATACATTTC
1 ACATACATTTC
17782070 ACATACATTT
1 ACATACATTT
17782080 TCAAATTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.38, C:0.25, G:0.00, T:0.38
Consensus pattern (11 bp):
ACATACATTTC
Found at i:17783943 original size:31 final size:31
Alignment explanation
Indices: 17783889--17783952 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
17783879 CCTTTTCATA
*
17783889 TTTCATATTTCATAACACCGGGCCGAAACCT
1 TTTCATATTTCACAACACCGGGCCGAAACCT
** * *
17783920 TTTCATATTTCACATTACTGGGCCGAAGCCT
1 TTTCATATTTCACAACACCGGGCCGAAACCT
17783951 TT
1 TT
17783953 ACTGTAAACG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.25, C:0.27, G:0.14, T:0.34
Consensus pattern (31 bp):
TTTCATATTTCACAACACCGGGCCGAAACCT
Found at i:17784228 original size:25 final size:24
Alignment explanation
Indices: 17784160--17784242 Score: 114
Period size: 25 Copynumber: 3.4 Consensus size: 24
17784150 TTGGAGGCCT
*
17784160 AGCCTCTTTTAATTACTGGGGCA-A
1 AGCC-CTTTTAATAACTGGGGCATA
*
17784184 AGCCCTTTTAATAATTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
17784208 AGCCCTTTATCATAACTGGGGCATA
1 AGCCCTTT-TAATAACTGGGGCATA
17784233 AGCCCTTTTA
1 AGCCCTTTTA
17784243 CACTTCCTCC
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
23 16 0.31
24 14 0.27
25 22 0.42
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.33
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:17784316 original size:20 final size:20
Alignment explanation
Indices: 17784291--17784357 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
17784281 TTATGAATAC
17784291 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
17784311 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
17784331 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
17784351 ACCATGT
1 ATCATGT
17784358 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:17784322 original size:11 final size:11
Alignment explanation
Indices: 17784291--17784346 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
17784281 TTATGAATAC
17784291 ATCATGTGCAT
1 ATCATGTGCAT
*
17784302 ATCA--TACAT
1 ATCATGTGCAT
17784311 ATCATGTGCAT
1 ATCATGTGCAT
*
17784322 ATCA--TACAT
1 ATCATGTGCAT
*
17784331 GTCATGTGCAT
1 ATCATGTGCAT
17784342 ATCAT
1 ATCAT
17784347 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:17784426 original size:25 final size:25
Alignment explanation
Indices: 17784394--17784441 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
17784384 ATATATAAAC
* * *
17784394 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
17784419 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
17784442 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:17785853 original size:21 final size:21
Alignment explanation
Indices: 17785816--17785872 Score: 55
Period size: 21 Copynumber: 2.7 Consensus size: 21
17785806 GCTTTTGGGA
17785816 AAAATAGAAAAAAATAAGAGC
1 AAAATAGAAAAAAATAAGAGC
* **
17785837 AAAA-AGAAATAAGATAAGATT
1 AAAATAGAAA-AAAATAAGAGC
17785858 AAAATA-AAATAAAAT
1 AAAATAGAAA-AAAAT
17785873 CATTTTCCAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
20 5 0.17
21 24 0.80
22 1 0.03
ACGTcount: A:0.72, C:0.02, G:0.11, T:0.16
Consensus pattern (21 bp):
AAAATAGAAAAAAATAAGAGC
Found at i:17786364 original size:19 final size:18
Alignment explanation
Indices: 17786327--17786370 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
17786317 ATACTTACAG
17786327 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
17786344 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
17786363 TACTAATT
1 TAATAATT
17786371 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:17790318 original size:9 final size:9
Alignment explanation
Indices: 17790297--17790337 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
17790287 TTTATACAAA
*
17790297 TAATTCGAT
1 TAATTCGGT
* *
17790306 TAATTTGGG
1 TAATTCGGT
17790315 TAATTCGGT
1 TAATTCGGT
17790324 TAATTCGGT
1 TAATTCGGT
17790333 TAATT
1 TAATT
17790338 TTATACTTAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.27, C:0.07, G:0.20, T:0.46
Consensus pattern (9 bp):
TAATTCGGT
Found at i:17792895 original size:13 final size:13
Alignment explanation
Indices: 17792877--17792903 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
17792867 CCACCTTAGA
17792877 AATCCAACCATAT
1 AATCCAACCATAT
17792890 AATCCAACCATAT
1 AATCCAACCATAT
17792903 A
1 A
17792904 CTTTTATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.30, G:0.00, T:0.22
Consensus pattern (13 bp):
AATCCAACCATAT
Found at i:17793677 original size:54 final size:54
Alignment explanation
Indices: 17793618--17793824 Score: 155
Period size: 54 Copynumber: 3.6 Consensus size: 54
17793608 TTGTTAGTTA
*
17793618 TAATTATTTTAAATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAT
1 TAATTATTTTAAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAT
* * * * **
17793672 TAATTATTTCAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATA
1 TAATTATTTTAAATT-T-TATTA-A--ATTATATATT-TTA-ATTA--AAA-T-ATAT-TTAATA
17793737 T
54 T
* * * *
17793738 TGATTA-TTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAA
1 TAATTATTTTA-AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAT
* * *
17793792 TAATTATGTTTAAATATGATTAAATTATTTATT
1 TAATTAT-TTTAAATTTTATTAAATTATATATT
17793825 ATTGATATTA
Statistics
Matches: 117, Mismatches: 21, Indels: 29
0.70 0.13 0.17
Matches are distributed among these distances:
54 23 0.20
55 23 0.20
56 8 0.07
57 3 0.03
59 12 0.10
60 4 0.03
61 13 0.11
63 4 0.03
64 5 0.04
65 8 0.07
66 14 0.12
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (54 bp):
TAATTATTTTAAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAT
Found at i:17793784 original size:16 final size:16
Alignment explanation
Indices: 17793763--17793804 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
17793753 TTATTAAATT
*
17793763 ATATATTTTAATTATA
1 ATATATTTTAATAATA
17793779 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
17793794 AT-TATGTTTAA
1 ATATAT-TTTAA
17793805 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:17793789 original size:15 final size:15
Alignment explanation
Indices: 17793754--17793795 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
17793744 TTAAGAATTT
*
17793754 TATTAAATTAT-ATA
1 TATTTAATTATAATA
17793768 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
17793782 TATTTAATAATAAT
1 TATTTAATTATAAT
17793796 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:17794042 original size:16 final size:16
Alignment explanation
Indices: 17794021--17794056 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
17794011 GATTTGCTAT
17794021 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
17794037 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
17794053 TACA
1 TACA
17794057 GCGAACCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.36, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:17797273 original size:29 final size:30
Alignment explanation
Indices: 17797224--17797284 Score: 106
Period size: 29 Copynumber: 2.1 Consensus size: 30
17797214 ATCTATGTTA
17797224 AAATACCAGAACCCCTCAACATATCCATTT
1 AAATACCAGAACCCCTCAACATATCCATTT
*
17797254 AAATGCCAGAA-CCCTCAACATATCCATTT
1 AAATACCAGAACCCCTCAACATATCCATTT
17797283 AA
1 AA
17797285 CTTGACATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 20 0.67
30 10 0.33
ACGTcount: A:0.41, C:0.31, G:0.05, T:0.23
Consensus pattern (30 bp):
AAATACCAGAACCCCTCAACATATCCATTT
Found at i:17802282 original size:33 final size:33
Alignment explanation
Indices: 17802245--17802368 Score: 203
Period size: 33 Copynumber: 3.8 Consensus size: 33
17802235 CTCTGTTTCA
* *
17802245 GGTTGCTGGACAGGAGCTAGAATATGAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
* *
17802278 GGTTGCTGGACGGGAGTTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
17802311 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
*
17802344 GGTTGCTGGACAGTAGCTGGAATGT
1 GGTTGCTGGACAGGAGCTGGAATGT
17802369 CAAGAAGAAA
Statistics
Matches: 84, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 84 1.00
ACGTcount: A:0.19, C:0.09, G:0.41, T:0.31
Consensus pattern (33 bp):
GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
Found at i:17808699 original size:96 final size:96
Alignment explanation
Indices: 17808531--17808818 Score: 569
Period size: 96 Copynumber: 3.0 Consensus size: 96
17808521 GATTAGGTTA
17808531 AAAC-GCCCATAGTAAAAGACCGAGAGAAATTAGGTTAAAATATGTCATAAGTTCTAGTACTATT
1 AAACTGCCCATAGTAAAAGACCGAGAGAAATTAGGTTAAAATATGTCATAAGTTCTAGTACTATT
17808595 CGTAAATTTGGAATTTATTCTCTGTATTTCT
66 CGTAAATTTGGAATTTATTCTCTGTATTTCT
17808626 AAACTGCCCATAGTAAAAGACCGAGAGAAATTAGGTTAAAATATGTCATAAGTTCTAGTACTATT
1 AAACTGCCCATAGTAAAAGACCGAGAGAAATTAGGTTAAAATATGTCATAAGTTCTAGTACTATT
17808691 CGTAAATTTGGAATTTATTCTCTGTATTTCT
66 CGTAAATTTGGAATTTATTCTCTGTATTTCT
17808722 AAACTGCCCATAGTAAAAGACCGAGAGAAATTAGGTTAAAATATGTCATAAGTTCTAGTACTATT
1 AAACTGCCCATAGTAAAAGACCGAGAGAAATTAGGTTAAAATATGTCATAAGTTCTAGTACTATT
17808787 CGTAAATTTGGAATTTATTCTCTGTATTTCT
66 CGTAAATTTGGAATTTATTCTCTGTATTTCT
17808818 A
1 A
17808819 TTTTTAGAAA
Statistics
Matches: 192, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
95 4 0.02
96 188 0.98
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.35
Consensus pattern (96 bp):
AAACTGCCCATAGTAAAAGACCGAGAGAAATTAGGTTAAAATATGTCATAAGTTCTAGTACTATT
CGTAAATTTGGAATTTATTCTCTGTATTTCT
Found at i:17808994 original size:26 final size:28
Alignment explanation
Indices: 17808947--17809000 Score: 94
Period size: 26 Copynumber: 2.0 Consensus size: 28
17808937 GGCTACTAAG
17808947 TTAATATTAATTTTTTTTATTTCAAAAT
1 TTAATATTAATTTTTTTTATTTCAAAAT
17808975 TTAATA-TAA-TTTTTTTATTTCAAAAT
1 TTAATATTAATTTTTTTTATTTCAAAAT
17809001 GTCACACTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 17 0.65
27 3 0.12
28 6 0.23
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (28 bp):
TTAATATTAATTTTTTTTATTTCAAAAT
Found at i:17810668 original size:42 final size:42
Alignment explanation
Indices: 17810609--17810728 Score: 213
Period size: 42 Copynumber: 2.9 Consensus size: 42
17810599 GGAACAACTG
* * *
17810609 CAACAGTATGAGGCAAAGATGAAAAAAATGGAGGAGCAATTA
1 CAACAGTCTGAAGCAAAGATGAAAAAAACGGAGGAGCAATTA
17810651 CAACAGTCTGAAGCAAAGATGAAAAAAACGGAGGAGCAATTA
1 CAACAGTCTGAAGCAAAGATGAAAAAAACGGAGGAGCAATTA
17810693 CAACAGTCTGAAGCAAAGATGAAAAAAACGGAGGAG
1 CAACAGTCTGAAGCAAAGATGAAAAAAACGGAGGAG
17810729 ATGTTGCGAA
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 75 1.00
ACGTcount: A:0.50, C:0.12, G:0.26, T:0.12
Consensus pattern (42 bp):
CAACAGTCTGAAGCAAAGATGAAAAAAACGGAGGAGCAATTA
Found at i:17813352 original size:42 final size:43
Alignment explanation
Indices: 17813262--17813376 Score: 146
Period size: 42 Copynumber: 2.7 Consensus size: 43
17813252 CTTCGTTTTC
** ** **
17813262 TCGATGCCATAGTTCAATTATGGTCTTACACATCTTTACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATCAGTACATAA
17813305 T-GATGCCATAGCCCAGCTATGGTCTTACACAT-AGT-CATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATCAGTACATA-A
17813346 TCGATGCCATAGCCCAGCTATGGTCTTACAC
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC
17813377 GAATCACATA
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
40 4 0.06
41 3 0.05
42 56 0.88
43 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (43 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATCAGTACATAA
Found at i:17813469 original size:47 final size:46
Alignment explanation
Indices: 17813306--17813466 Score: 174
Period size: 47 Copynumber: 3.6 Consensus size: 46
17813296 TTTACATAAT
*
17813306 GATGCCATAGCCCAGCTATGGTCTTACACA-TAGTCATATA-T---C
1 GATGCCATAGCCCAGATATGGTCTTACACAGTAG-CATATATTCACC
* * *
17813348 GATGCCATAGCCCAGCTATGGTCTTACACGAATCA-CATAT-TTCACT
1 GATGCCATAGCCCAGATATGGTCTTACAC-AGT-AGCATATATTCACC
* *
17813394 GATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCTCACC
1 GATGCCATAGCCCAGATATGGTCTTACACAGTAGCATATAT-TCACC
*
17813441 GATGCCATATCCCAGATATGGTCTTA
1 GATGCCATAGCCCAGATATGGTCTTA
17813467 TACGGAAATC
Statistics
Matches: 103, Mismatches: 6, Indels: 15
0.83 0.05 0.12
Matches are distributed among these distances:
42 29 0.28
43 7 0.07
44 2 0.02
45 8 0.08
46 27 0.26
47 30 0.29
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (46 bp):
GATGCCATAGCCCAGATATGGTCTTACACAGTAGCATATATTCACC
Found at i:17813530 original size:31 final size:31
Alignment explanation
Indices: 17813495--17813643 Score: 212
Period size: 31 Copynumber: 4.8 Consensus size: 31
17813485 CTTGTCTCTT
*
17813495 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
17813526 GTAGCCGGTA-CTACCATTTTTCACTGATCAG
1 GTAGCC-GAAGCTACCACTTTTCACTGATCAG
17813557 GTAGCC-AGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGA-AGCTACCACTTTTCACTGATCAG
* *
17813588 GTAGCAGAAGCTACCACTTTTCACTGATCAA
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
17813619 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
17813644 TGTCATTTGT
Statistics
Matches: 106, Mismatches: 8, Indels: 8
0.87 0.07 0.07
Matches are distributed among these distances:
30 1 0.01
31 102 0.96
32 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:17813725 original size:50 final size:51
Alignment explanation
Indices: 17813619--17813747 Score: 199
Period size: 50 Copynumber: 2.5 Consensus size: 51
17813609 CACTGATCAA
* * *
17813619 GTAGCTGAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
*
17813670 GTAGCCGAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCA-TTTGTCATTGATCAGATAAGT
17813720 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
17813748 TGCCATGGTC
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
50 45 0.62
51 27 0.38
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
Found at i:17822109 original size:35 final size:35
Alignment explanation
Indices: 17822063--17822129 Score: 134
Period size: 35 Copynumber: 1.9 Consensus size: 35
17822053 ACAACGTAAT
17822063 GCCTTCCATGCTTGTGGTAATCAATCTTCCGGCTA
1 GCCTTCCATGCTTGTGGTAATCAATCTTCCGGCTA
17822098 GCCTTCCATGCTTGTGGTAATCAATCTTCCGG
1 GCCTTCCATGCTTGTGGTAATCAATCTTCCGG
17822130 TTACTTTGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.16, C:0.28, G:0.21, T:0.34
Consensus pattern (35 bp):
GCCTTCCATGCTTGTGGTAATCAATCTTCCGGCTA
Found at i:17826931 original size:18 final size:18
Alignment explanation
Indices: 17826910--17826953 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
17826900 ATAATTAGTA
17826910 ATTCAGTAACAGTCAAAT
1 ATTCAGTAACAGTCAAAT
* *
17826928 ATTCAGTAGCAGTCAATT
1 ATTCAGTAACAGTCAAAT
17826946 ATTCAGTA
1 ATTCAGTA
17826954 CCTTTATTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.32
Consensus pattern (18 bp):
ATTCAGTAACAGTCAAAT
Found at i:17828123 original size:22 final size:22
Alignment explanation
Indices: 17828098--17828154 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
17828088 TCCCCTGTTC
*
17828098 TTCTCTGTTTCGTTTGC-TTTGT
1 TTCTCTGTTTCATTT-CTTTTGT
*
17828120 TTCTCTTTTTCATTTCTTTTGT
1 TTCTCTGTTTCATTTCTTTTGT
17828142 TTCT-T-TTTCATTT
1 TTCTCTGTTTCATTT
17828155 ATTATTTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 8 0.25
21 2 0.06
22 22 0.69
ACGTcount: A:0.04, C:0.18, G:0.09, T:0.70
Consensus pattern (22 bp):
TTCTCTGTTTCATTTCTTTTGT
Found at i:17829552 original size:4 final size:5
Alignment explanation
Indices: 17829529--17829576 Score: 64
Period size: 5 Copynumber: 10.0 Consensus size: 5
17829519 ATCCTAAAAT
* *
17829529 AATAA AATAA AATAA AAT-A AATAA AA-AT AATAA AACAA AATAA AATAA
1 AATAA AATAA AATAA AATAA AATAA AATAA AATAA AATAA AATAA AATAA
17829577 TATCTTCTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
4 7 0.19
5 30 0.81
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:17832973 original size:18 final size:18
Alignment explanation
Indices: 17832930--17832964 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
17832920 GGGCCAACCT
*
17832930 TGGGTATTGGGTTTTGTG
1 TGGGTATTGGGTGTTGTG
17832948 TGGGTATTGGGTGTTGT
1 TGGGTATTGGGTGTTGT
17832965 TGGTTTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.06, C:0.00, G:0.46, T:0.49
Consensus pattern (18 bp):
TGGGTATTGGGTGTTGTG
Found at i:17839906 original size:5 final size:5
Alignment explanation
Indices: 17839896--17839944 Score: 57
Period size: 5 Copynumber: 10.0 Consensus size: 5
17839886 ATCCTAAAAT
* *
17839896 AATAA AATAA AAT-A AATAAA AATAA AA-AT AATAA AACAA AATAA AATAA
1 AATAA AATAA AATAA AAT-AA AATAA AATAA AATAA AATAA AATAA AATAA
17839945 TATCTTCTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
4 7 0.19
5 26 0.70
6 4 0.11
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.18
Consensus pattern (5 bp):
AATAA
Found at i:17839908 original size:13 final size:13
Alignment explanation
Indices: 17839890--17839939 Score: 64
Period size: 13 Copynumber: 3.6 Consensus size: 13
17839880 AACTTAATCC
17839890 TAAAATAATAAAA
1 TAAAATAATAAAA
17839903 TAAAATAAATAAAAA
1 TAAAAT-AAT-AAAA
17839918 TAAAAATAATAAAA
1 T-AAAATAATAAAA
*
17839932 CAAAATAA
1 TAAAATAA
17839940 AATAATATCT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
13 13 0.39
14 7 0.21
15 8 0.24
16 5 0.15
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (13 bp):
TAAAATAATAAAA
Found at i:17854863 original size:178 final size:176
Alignment explanation
Indices: 17854542--17854881 Score: 495
Period size: 178 Copynumber: 1.9 Consensus size: 176
17854532 GTTGGTGACT
* * *
17854542 TTTCGACTTACTCTCCCTTCCGAATGATCCTCTCCTTCCCTTTTTCCCTTTGATCAGACTAGATT
1 TTTCGACTTACTCTCCCTTCCAAATGATCCTCTCCTTCCCCTCTTCCCTTTGATCAGACTAGATT
* * * * *
17854607 TCTAAGGATCTCCTCCAAACCCATCGAATTCCTAACTCGAAACCTGGGATTCAACATTTTTTTCC
66 TCTAAGGAACTCCTCCAAACCCATCAAATTCCTAACTCGAAACCTAGGATTCAACATCTTCTTCC
17854672 ACCATAAGGGGTTTGCCAAAGAAGACATCTTTGTTCTACCGATGCC
131 ACCATAAGGGGTTTGCCAAAGAAGACATCTTTGTTCTACCGATGCC
* * * *
17854718 TTTCGGCTTACTGCTGCCTTCCAAAATGATCTTCTCCTTCCCCTCTTCTCTTTGATCAGACTAGA
1 TTTCGACTTACT-CTCCCTTCC-AAATGATCCTCTCCTTCCCCTCTTCCCTTTGATCAGACTAGA
* *
17854783 TTT-TCAAGGAACT-CTCCCAAACCCATCAAATTTCTAACTCGAAACCTAGGATTTAACATCTTC
64 TTTCT-AAGGAACTCCT-CCAAACCCATCAAATTCCTAACTCGAAACCTAGGATTCAACATCTTC
*
17854846 TTCCACCATAAGGGGTTTGTCAAAGAAGACATCTTT
127 TTCCACCATAAGGGGTTTGCCAAAGAAGACATCTTT
17854882 CCAACAAAGT
Statistics
Matches: 145, Mismatches: 15, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
176 11 0.08
177 11 0.08
178 123 0.85
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.34
Consensus pattern (176 bp):
TTTCGACTTACTCTCCCTTCCAAATGATCCTCTCCTTCCCCTCTTCCCTTTGATCAGACTAGATT
TCTAAGGAACTCCTCCAAACCCATCAAATTCCTAACTCGAAACCTAGGATTCAACATCTTCTTCC
ACCATAAGGGGTTTGCCAAAGAAGACATCTTTGTTCTACCGATGCC
Found at i:17855695 original size:25 final size:24
Alignment explanation
Indices: 17855664--17855745 Score: 73
Period size: 25 Copynumber: 3.4 Consensus size: 24
17855654 ACGGGTAGGA
17855664 AAAAGAATAAG-AAAAGGAAGAGAAG
1 AAAAGAA-AAGAAAAAGGAA-AGAAG
17855689 AAAAGAAAAGAAAAAGGAAAGAA-
1 AAAAGAAAAGAAAAAGGAAAGAAG
* *
17855712 AATGAGGGAAATGAAAAAGGAAAG-A-
1 AA--A-AGAAAAGAAAAAGGAAAGAAG
17855737 AAAAGAAAA
1 AAAAGAAAA
17855746 AGATGTACAA
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
22 4 0.08
23 3 0.06
24 7 0.14
25 19 0.39
26 16 0.33
ACGTcount: A:0.71, C:0.00, G:0.26, T:0.04
Consensus pattern (24 bp):
AAAAGAAAAGAAAAAGGAAAGAAG
Found at i:17856459 original size:11 final size:11
Alignment explanation
Indices: 17856445--17856493 Score: 62
Period size: 11 Copynumber: 4.5 Consensus size: 11
17856435 ATATTTAAAT
17856445 AATAATAACAA
1 AATAATAACAA
*
17856456 AATAGTAACAA
1 AATAATAACAA
*
17856467 TATAATAACAA
1 AATAATAACAA
* *
17856478 AATAACAAAAA
1 AATAATAACAA
17856489 AATAA
1 AATAA
17856494 CAAAAAAAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 32 1.00
ACGTcount: A:0.71, C:0.08, G:0.02, T:0.18
Consensus pattern (11 bp):
AATAATAACAA
Found at i:17856503 original size:12 final size:11
Alignment explanation
Indices: 17856476--17856501 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
17856466 ATATAATAAC
17856476 AAAATAACAAA
1 AAAATAACAAA
17856487 AAAATAACAAA
1 AAAATAACAAA
17856498 AAAA
1 AAAA
17856502 ATTAGCGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.85, C:0.08, G:0.00, T:0.08
Consensus pattern (11 bp):
AAAATAACAAA
Found at i:17862446 original size:20 final size:18
Alignment explanation
Indices: 17862404--17862452 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 18
17862394 AAATGTTATT
17862404 TATATTAATTATTTAATTTA
1 TATATTAA--ATTTAATTTA
*
17862424 TATTTTAAATTTATATTTCA
1 TATATTAAATTTA-ATTT-A
17862444 TATATTAAA
1 TATATTAAA
17862453 ATATTAATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 5 0.20
19 4 0.16
20 16 0.64
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (18 bp):
TATATTAAATTTAATTTA
Found at i:17863515 original size:29 final size:29
Alignment explanation
Indices: 17863448--17863517 Score: 74
Period size: 29 Copynumber: 2.4 Consensus size: 29
17863438 TTTAATAGTC
*
17863448 TATAACTTTATGATTTTTTAGAGATTAAA
1 TATAATTTTATGATTTTTTAGAGATTAAA
17863477 T-TAAATTTT-T-ATATTTTTAGAGGATTAAGA
1 TAT-AATTTTATGAT-TTTTTAGA-GATTAA-A
17863507 TATAATTTTAT
1 TATAATTTTAT
17863518 TATTATTAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
27 2 0.06
28 10 0.29
29 12 0.35
30 8 0.24
31 2 0.06
ACGTcount: A:0.37, C:0.01, G:0.10, T:0.51
Consensus pattern (29 bp):
TATAATTTTATGATTTTTTAGAGATTAAA
Found at i:17865786 original size:17 final size:17
Alignment explanation
Indices: 17865761--17865803 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
17865751 CATGTGTACT
* *
17865761 GCCCGTGTGTGACACAT
1 GCCCATGTGTGACACAC
*
17865778 GCCTATGTGTGACACAC
1 GCCCATGTGTGACACAC
17865795 GCCCATGTG
1 GCCCATGTG
17865804 GCTAGGCCGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.19, C:0.30, G:0.28, T:0.23
Consensus pattern (17 bp):
GCCCATGTGTGACACAC
Found at i:17866691 original size:43 final size:43
Alignment explanation
Indices: 17866642--17866727 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
17866632 TCATATTTCA
*
17866642 TTTCTCATCTCATAATCATTGCTCATCTTTGCCATTTCAATAT
1 TTTCTCATCTCATAATCATTGCTCATCTTTACCATTTCAATAT
* *
17866685 TTTCTCATCTCATATTCATTTCTCATCTTTACCATTTCAATAT
1 TTTCTCATCTCATAATCATTGCTCATCTTTACCATTTCAATAT
17866728 CAATCACATA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.23, C:0.26, G:0.02, T:0.49
Consensus pattern (43 bp):
TTTCTCATCTCATAATCATTGCTCATCTTTACCATTTCAATAT
Found at i:17877909 original size:28 final size:27
Alignment explanation
Indices: 17877877--17877978 Score: 71
Period size: 28 Copynumber: 3.5 Consensus size: 27
17877867 ACTTGTAATA
17877877 GGGCTACGGCCCAGATCGATACTGATAT
1 GGGCTA-GGCCCAGATCGATACTGATAT
* *
17877905 GGGCTAGGCCCAATATACTCTGATACTG-TAAG
1 GGGCTAGGCCC---AGA-TC-GATACTGAT-AT
** *
17877937 GGGCTATGGCCCAGATTAATATTGATAT
1 GGGCTA-GGCCCAGATCGATACTGATAT
17877965 GGGCTAAGGCCCAG
1 GGGCT-AGGCCCAG
17877979 TTAACACTGA
Statistics
Matches: 58, Mismatches: 7, Indels: 18
0.70 0.08 0.22
Matches are distributed among these distances:
27 5 0.09
28 24 0.41
29 3 0.05
30 4 0.07
31 3 0.05
32 14 0.24
33 5 0.09
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (27 bp):
GGGCTAGGCCCAGATCGATACTGATAT
Found at i:17877917 original size:60 final size:59
Alignment explanation
Indices: 17877841--17877977 Score: 152
Period size: 60 Copynumber: 2.3 Consensus size: 59
17877831 AACTGTGTTA
* * *
17877841 ATATGGGCAAGACCCAATATA-TCTCGACT-TGTAATAGGGCTACGGCCCAGATCGATACTG
1 ATATGGGCTAGGCCCAATATACTCT-GA-TATGTAA-AGGGCTACGGCCCAGATCAATACTG
* * * *
17877901 ATATGGGCTAGGCCCAATATACTCTGATACTGTAAGGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAATATACTCTGATA-TGTAAAGGGCTACGGCCCAGATCAATACTG
17877961 ATATGGGCTAAGGCCCA
1 ATATGGGCT-AGGCCCA
17877978 GTTAACACTG
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
59 1 0.02
60 50 0.76
61 15 0.23
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (59 bp):
ATATGGGCTAGGCCCAATATACTCTGATATGTAAAGGGCTACGGCCCAGATCAATACTG
Found at i:17880335 original size:24 final size:22
Alignment explanation
Indices: 17880292--17880336 Score: 54
Period size: 24 Copynumber: 2.0 Consensus size: 22
17880282 AATTATTAAT
**
17880292 AATAAAATATCAATTTCACACA
1 AATAAAATATCAATCCCACACA
17880314 AATAAATAGTATCAATCCCACAC
1 AATAAA-A-TATCAATCCCACAC
17880337 CTTAGATTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 6 0.32
23 1 0.05
24 12 0.63
ACGTcount: A:0.51, C:0.22, G:0.02, T:0.24
Consensus pattern (22 bp):
AATAAAATATCAATCCCACACA
Found at i:17906152 original size:17 final size:17
Alignment explanation
Indices: 17906130--17906162 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
17906120 TCTGTTACAA
17906130 AAATTCTATTTCTATTC
1 AAATTCTATTTCTATTC
*
17906147 AAATTCTATTTTTATT
1 AAATTCTATTTCTATT
17906163 ATATTTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.30, C:0.12, G:0.00, T:0.58
Consensus pattern (17 bp):
AAATTCTATTTCTATTC
Found at i:17906167 original size:11 final size:12
Alignment explanation
Indices: 17906153--17906181 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
17906143 ATTCAAATTC
17906153 TATTTTTATT-A
1 TATTTTTATTAA
17906164 TATTTTTATTAA
1 TATTTTTATTAA
17906176 TATTTT
1 TATTTT
17906182 CAAGAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 10 0.59
12 7 0.41
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (12 bp):
TATTTTTATTAA
Found at i:17907667 original size:6 final size:6
Alignment explanation
Indices: 17907656--17907685 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
17907646 AACATATTCC
17907656 TATATT TATATT TATATT TATATT T-TATT T
1 TATATT TATATT TATATT TATATT TATATT T
17907686 TCTTTTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.21
6 19 0.79
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (6 bp):
TATATT
Found at i:17909356 original size:3 final size:3
Alignment explanation
Indices: 17909343--17909444 Score: 65
Period size: 3 Copynumber: 36.0 Consensus size: 3
17909333 TTCCATTTTA
* * * * *
17909343 TCT TAT TCT TCT TCT CCT TC- TCC TCT TCT TCT TCT TCT TTT TC- TCC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
* * * *
17909389 TCC TCT TCT TTT TCT TC- TCT GT-T TCT TC- TCT TGT TCT T-T TTT
1 TCT TCT TCT TCT TCT TCT TCT -TCT TCT TCT TCT TCT TCT TCT TCT
17909431 TC- TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT
17909445 ACTGCCTAGG
Statistics
Matches: 78, Mismatches: 13, Indels: 16
0.73 0.12 0.15
Matches are distributed among these distances:
2 13 0.17
3 64 0.82
4 1 0.01
ACGTcount: A:0.01, C:0.32, G:0.02, T:0.65
Consensus pattern (3 bp):
TCT
Found at i:17909369 original size:23 final size:23
Alignment explanation
Indices: 17909343--17909390 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
17909333 TTCCATTTTA
17909343 TCTTATTCTTCTTCTCCTTCTCC
1 TCTTATTCTTCTTCTCCTTCTCC
* **
17909366 TCTTCTTCTTCTTCTTTTTCTCC
1 TCTTATTCTTCTTCTCCTTCTCC
17909389 TC
1 TC
17909391 CTCTTCTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.02, C:0.38, G:0.00, T:0.60
Consensus pattern (23 bp):
TCTTATTCTTCTTCTCCTTCTCC
Found at i:17909395 original size:23 final size:23
Alignment explanation
Indices: 17909348--17909406 Score: 82
Period size: 23 Copynumber: 2.6 Consensus size: 23
17909338 TTTTATCTTA
* *
17909348 TTCTTCTTCTCCTTCTCCTCTTC
1 TTCTTCTTCTTCTTCTCCTCCTC
*
17909371 TTCTTCTTCTTTTTCTCCTCCTC
1 TTCTTCTTCTTCTTCTCCTCCTC
*
17909394 TTCTTTTTCTTCT
1 TTCTTCTTCTTCT
17909407 CTGTTTCTTC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (23 bp):
TTCTTCTTCTTCTTCTCCTCCTC
Found at i:17909425 original size:8 final size:8
Alignment explanation
Indices: 17909349--17909441 Score: 55
Period size: 8 Copynumber: 11.1 Consensus size: 8
17909339 TTTATCTTAT
17909349 TCTTCTTC
1 TCTTCTTC
*
17909357 TCCTTCTCC
1 T-CTTCTTC
17909366 TCTTCTTC
1 TCTTCTTC
17909374 TTCTTCTT-
1 -TCTTCTTC
*
17909382 T-TTCTCC
1 TCTTCTTC
*
17909389 TCCTCTTC
1 TCTTCTTC
*
17909397 TTTTTCTTC
1 -TCTTCTTC
17909406 TCTGTTTCTTC
1 TC---TTCTTC
*
17909417 TCTTGTTC
1 TCTTCTTC
* *
17909425 TTTTTTTC
1 TCTTCTTC
17909433 TCTTCTTC
1 TCTTCTTC
17909441 T
1 T
17909442 TCTACTGCCT
Statistics
Matches: 64, Mismatches: 13, Indels: 16
0.69 0.14 0.17
Matches are distributed among these distances:
6 4 0.06
7 2 0.03
8 30 0.47
9 20 0.31
11 8 0.12
ACGTcount: A:0.00, C:0.33, G:0.02, T:0.65
Consensus pattern (8 bp):
TCTTCTTC
Found at i:17909444 original size:11 final size:11
Alignment explanation
Indices: 17909352--17909444 Score: 59
Period size: 11 Copynumber: 8.5 Consensus size: 11
17909342 ATCTTATTCT
*
17909352 TCTTCTCCTTC
1 TCTTCTTCTTC
*
17909363 TCCTCTTCTTC
1 TCTTCTTCTTC
*
17909374 TTCTTCTTTTTC
1 -TCTTCTTCTTC
* *
17909386 TCCTCCTCTTC
1 TCTTCTTCTTC
17909397 T-TT-TTCTTC
1 TCTTCTTCTTC
17909406 TCTGT-TTCTTC
1 TCT-TCTTCTTC
* *
17909417 TCTTGTTCTTT
1 TCTTCTTCTTC
*
17909428 TTTTC-TCTTC
1 TCTTCTTCTTC
17909438 TTCTTCT
1 -TCTTCT
17909445 ACTGCCTAGG
Statistics
Matches: 62, Mismatches: 14, Indels: 11
0.71 0.16 0.13
Matches are distributed among these distances:
9 6 0.10
10 7 0.11
11 40 0.65
12 9 0.15
ACGTcount: A:0.00, C:0.33, G:0.02, T:0.65
Consensus pattern (11 bp):
TCTTCTTCTTC
Found at i:17911896 original size:64 final size:64
Alignment explanation
Indices: 17911795--17912054 Score: 520
Period size: 64 Copynumber: 4.1 Consensus size: 64
17911785 CTGAAGCGTG
17911795 AATTCATTTCATATGGCAATGAATCTATAATAGAAATAAATATATCAAATCAATAATGATGCTT
1 AATTCATTTCATATGGCAATGAATCTATAATAGAAATAAATATATCAAATCAATAATGATGCTT
17911859 AATTCATTTCATATGGCAATGAATCTATAATAGAAATAAATATATCAAATCAATAATGATGCTT
1 AATTCATTTCATATGGCAATGAATCTATAATAGAAATAAATATATCAAATCAATAATGATGCTT
17911923 AATTCATTTCATATGGCAATGAATCTATAATAGAAATAAATATATCAAATCAATAATGATGCTT
1 AATTCATTTCATATGGCAATGAATCTATAATAGAAATAAATATATCAAATCAATAATGATGCTT
17911987 AATTCATTTCATATGGCAATGAATCTATAATAGAAATAAATATATCAAATCAATAATGATGCTT
1 AATTCATTTCATATGGCAATGAATCTATAATAGAAATAAATATATCAAATCAATAATGATGCTT
17912051 AATT
1 AATT
17912055 GTAATATTAT
Statistics
Matches: 196, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 196 1.00
ACGTcount: A:0.45, C:0.11, G:0.09, T:0.35
Consensus pattern (64 bp):
AATTCATTTCATATGGCAATGAATCTATAATAGAAATAAATATATCAAATCAATAATGATGCTT
Found at i:17918668 original size:17 final size:17
Alignment explanation
Indices: 17918648--17918826 Score: 74
Period size: 17 Copynumber: 10.0 Consensus size: 17
17918638 TTAAAAAATG
17918648 AAATTTTTGAAACACGA
1 AAATTTTTGAAACACGA
* * *
17918665 AAATTTTAGAAATAAGA
1 AAATTTTTGAAACACGA
** * *
17918682 ATTTTTTTAAAAAAAATCACGG
1 AAATTTTT----GAAA-CACGA
*
17918704 AAATTTTTAAAACAC-A
1 AAATTTTTGAAACACGA
*
17918720 GGAATTTTTGAAACACCGGA
1 -AAATTTTTGAAACA-C-GA
* *
17918740 AATTTTTTAAAAACACGA
1 AAATTTTT-GAAACACGA
**
17918758 GGATTTTTGAAAACACGA
1 AAATTTTTG-AAACACGA
* *
17918776 AGATTTTTTGAAACGCG-
1 A-AATTTTTGAAACACGA
* * * *
17918793 AGAGTTTAGAAACATGA
1 AAATTTTTGAAACACGA
17918810 AAATTTTTGAAACACGA
1 AAATTTTTGAAACACGA
17918827 CAATCTTTTT
Statistics
Matches: 113, Mismatches: 36, Indels: 26
0.65 0.21 0.15
Matches are distributed among these distances:
16 9 0.08
17 48 0.42
18 26 0.23
19 13 0.12
20 6 0.05
21 3 0.03
22 8 0.07
ACGTcount: A:0.45, C:0.10, G:0.15, T:0.30
Consensus pattern (17 bp):
AAATTTTTGAAACACGA
Found at i:17918784 original size:37 final size:36
Alignment explanation
Indices: 17918701--17918769 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 36
17918691 AAAAAAATCA
17918701 CGGAAA-TTTTTAAAACACAGGAATTTTTGAAACAC
1 CGGAAATTTTTTAAAACACAGGAATTTTTGAAACAC
17918736 CGGAAATTTTTTAAAAACACGAGG-ATTTTTGAAA
1 CGGAAATTTTTT-AAAACAC-AGGAATTTTTGAAA
17918770 ACACGAAGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
35 6 0.19
36 5 0.16
37 17 0.55
38 3 0.10
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.30
Consensus pattern (36 bp):
CGGAAATTTTTTAAAACACAGGAATTTTTGAAACAC
Found at i:17918785 original size:19 final size:19
Alignment explanation
Indices: 17918707--17918788 Score: 75
Period size: 18 Copynumber: 4.5 Consensus size: 19
17918697 ATCACGGAAA
* *
17918707 TTTTT-AAAACAC-AGGAA
1 TTTTTGAAAACACGAAGAT
17918724 TTTTTG-AAACACCGGAA-AT
1 TTTTTGAAAACA-C-GAAGAT
* *
17918743 TTTTTAAAAACACGAGGA-
1 TTTTTGAAAACACGAAGAT
17918761 TTTTTGAAAACACGAAGAT
1 TTTTTGAAAACACGAAGAT
17918780 TTTTTGAAA
1 TTTTTGAAA
17918789 CGCGAGAGTT
Statistics
Matches: 52, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
17 10 0.19
18 19 0.37
19 17 0.33
20 6 0.12
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.33
Consensus pattern (19 bp):
TTTTTGAAAACACGAAGAT
Found at i:17918789 original size:18 final size:17
Alignment explanation
Indices: 17918723--17918826 Score: 77
Period size: 18 Copynumber: 5.9 Consensus size: 17
17918713 AAACACAGGA
17918723 ATTTTTGAAACACCGGAA-
1 ATTTTTGAAACA-C-GAAG
* *
17918741 ATTTTTTAAAAACACGAGG
1 A-TTTTT-GAAACACGAAG
17918760 ATTTTTGAAAACACGAAG
1 ATTTTTG-AAACACGAAG
*
17918778 ATTTTTTGAAACGCG-AG
1 A-TTTTTGAAACACGAAG
* * * *
17918795 AGTTTAGAAACATGAAA
1 ATTTTTGAAACACGAAG
17918812 ATTTTTGAAACACGA
1 ATTTTTGAAACACGA
17918827 CAATCTTTTT
Statistics
Matches: 67, Mismatches: 13, Indels: 13
0.72 0.14 0.14
Matches are distributed among these distances:
16 9 0.13
17 16 0.24
18 24 0.36
19 13 0.19
20 5 0.07
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.30
Consensus pattern (17 bp):
ATTTTTGAAACACGAAG
Found at i:17918873 original size:16 final size:16
Alignment explanation
Indices: 17918852--17918938 Score: 75
Period size: 16 Copynumber: 5.2 Consensus size: 16
17918842 AAAAAATATA
17918852 AAAAATTTTAAAACAC
1 AAAAATTTTAAAACAC
*
17918868 AAAAATTTGTGAAACAC
1 AAAAATTT-TAAAACAC
* *
17918885 GAGAATTATTGAAAACAC
1 AAAAATT-TT-AAAACAC
* *
17918903 GAAAAATTTGAAAATAC
1 -AAAAATTTTAAAACAC
* *
17918920 GAAAATTTAAAAACAC
1 AAAAATTTTAAAACAC
17918936 AAA
1 AAA
17918939 TTTTTTTTTT
Statistics
Matches: 55, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
16 23 0.42
17 19 0.35
18 8 0.15
19 5 0.09
ACGTcount: A:0.59, C:0.10, G:0.09, T:0.22
Consensus pattern (16 bp):
AAAAATTTTAAAACAC
Found at i:17918953 original size:22 final size:23
Alignment explanation
Indices: 17918928--17918975 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 23
17918918 ACGAAAATTT
17918928 AAAAACAC-A-AATTTTTTTTTTA
1 AAAAACACGACAA-TTTTTTTTTA
17918950 AAAAACACGACAATTTTTTTTTA
1 AAAAACACGACAATTTTTTTTTA
17918973 AAA
1 AAA
17918976 CATAAAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
22 8 0.33
23 14 0.58
24 2 0.08
ACGTcount: A:0.48, C:0.10, G:0.02, T:0.40
Consensus pattern (23 bp):
AAAAACACGACAATTTTTTTTTA
Found at i:17919003 original size:128 final size:130
Alignment explanation
Indices: 17918819--17919055 Score: 379
Period size: 128 Copynumber: 1.8 Consensus size: 130
17918809 AAAATTTTTG
*
17918819 AAACACGACAATCTTTTTTTTTTAAAAAATATAAAAAATTTTAAAACACAAAAATTTGTGAAACA
1 AAACACGACAA--TTTTTTTTTT-AAAAACATAAAAAATTTTAAAACACAAAAATTTGTGAAACA
*
17918884 CGAGAATTATTGAAAACACGAAAAATTTGAAAATACGAAAATTTAAAAACACAAATTTTTTTTTT
63 CGAGAATTATTGAAAACACGAAAAATTTGAAAACACGAAAATTTAAAAACACAAATTTTTTTTTT
17918949 AAA
128 AAA
* *
17918952 AAACACGACAA-TTTTTTTTT-AAAACATAAAAAATTTTAAAACACGAGAATTTGTGAAACACGA
1 AAACACGACAATTTTTTTTTTAAAAACATAAAAAATTTTAAAACACAAAAATTTGTGAAACACGA
* *
17919015 GAATTGTTGAAAACACGAAAATTTTGAAAACACGAAAATTT
66 GAATTATTGAAAACACGAAAAATTTGAAAACACGAAAATTT
17919056 TTGAAACATA
Statistics
Matches: 98, Mismatches: 6, Indels: 5
0.90 0.06 0.05
Matches are distributed among these distances:
128 78 0.80
130 9 0.09
133 11 0.11
ACGTcount: A:0.51, C:0.11, G:0.09, T:0.30
Consensus pattern (130 bp):
AAACACGACAATTTTTTTTTTAAAAACATAAAAAATTTTAAAACACAAAAATTTGTGAAACACGA
GAATTATTGAAAACACGAAAAATTTGAAAACACGAAAATTTAAAAACACAAATTTTTTTTTTAAA
Found at i:17919030 original size:18 final size:17
Alignment explanation
Indices: 17918981--17919096 Score: 114
Period size: 17 Copynumber: 6.7 Consensus size: 17
17918971 TAAAACATAA
17918981 AAAATTTT-AAAACACG
1 AAAATTTTGAAAACACG
*
17918997 AGAATTTGTG-AAACACG
1 AAAATTT-TGAAAACACG
*
17919014 AGAATTGTTGAAAACACG
1 AAAATT-TTGAAAACACG
17919032 AAAATTTTGAAAACACG
1 AAAATTTTGAAAACACG
*
17919049 AAAATTTTTG-AAACATAG
1 AAAA-TTTTGAAAACA-CG
*
17919067 AAATTTTTAGAAAAACACG
1 AAAATTTT-G-AAAACACG
17919086 AAAA-TTTGAAA
1 AAAATTTTGAAA
17919097 TTTTTTTTTA
Statistics
Matches: 85, Mismatches: 6, Indels: 18
0.78 0.06 0.17
Matches are distributed among these distances:
16 9 0.11
17 41 0.48
18 26 0.31
19 4 0.05
20 5 0.06
ACGTcount: A:0.51, C:0.09, G:0.14, T:0.26
Consensus pattern (17 bp):
AAAATTTTGAAAACACG
Found at i:17919038 original size:35 final size:35
Alignment explanation
Indices: 17918981--17919091 Score: 113
Period size: 35 Copynumber: 3.2 Consensus size: 35
17918971 TAAAACATAA
*
17918981 AAAATT-TT-AAAACACGAGAATTTGTG-AAACACG
1 AAAATTGTTGAAAACACGAAAATTT-TGAAAACACG
*
17919014 AGAATTGTTGAAAACACGAAAATTTTGAAAACACG
1 AAAATTGTTGAAAACACGAAAATTTTGAAAACACG
* * *
17919049 AAAATTTTTG-AAACATAGAAATTTTTAGAAAAACACG
1 AAAATTGTTGAAAACA-CGAAAATTTT-G-AAAACACG
17919086 AAAATT
1 AAAATT
17919092 TGAAATTTTT
Statistics
Matches: 66, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
33 5 0.08
34 9 0.14
35 37 0.56
36 1 0.02
37 14 0.21
ACGTcount: A:0.50, C:0.10, G:0.14, T:0.26
Consensus pattern (35 bp):
AAAATTGTTGAAAACACGAAAATTTTGAAAACACG
Found at i:17919074 original size:128 final size:127
Alignment explanation
Indices: 17918819--17919135 Score: 363
Period size: 128 Copynumber: 2.4 Consensus size: 127
17918809 AAAATTTTTG
* * *
17918819 AAACACGACAATCTTTTTTTTTTAAAAAATATAAAAAATTTTAAAACACAAAAATTTGTGAAACA
1 AAACACGACAA--TTTTTTTTTT--AAAACATAAAAAATTTTAAAACACGAGAATTTGTGAAACA
* *
17918884 CGAGAATTATTGAAAACACGAAAAATTTGAAAATACGAAAATTTAAAAACACAAATTTTTTTTTT
62 CGAGAATTATTGAAAACACGAAAAATTTGAAAACACGAAAATTTAAAAACACAAA---TATTTTT
17918949 A-AA
124 AGAA
17918952 AAACACGACAA-TTTTTTTTTAAAACATAAAAAATTTTAAAACACGAGAATTTGTGAAACACGAG
1 AAACACGACAATTTTTTTTTTAAAACATAAAAAATTTTAAAACACGAGAATTTGTGAAACACGAG
* * ** *
17919016 AATTGTTGAAAACACGAAAATTTTGAAAACACGAAAATTTTTGAAACATAGAA-ATTTTTAGAA
66 AATTATTGAAAACACGAAAAATTTGAAAACACGAAAA-TTTAAAAACACA-AATATTTTTAGAA
* * *
17919079 AAACACGAAAATTTGAAATTTTTTTTTAAAC-TAGAAAATTTTAAAACACGAGAATTT
1 AAACACGACAA-TT----TTTTTTTTAAAACATAAAAAATTTTAAAACACGAGAATTT
17919136 TTTTTTAAAA
Statistics
Matches: 162, Mismatches: 13, Indels: 19
0.84 0.07 0.10
Matches are distributed among these distances:
126 6 0.04
127 12 0.07
128 75 0.46
129 10 0.06
130 11 0.07
132 25 0.15
133 23 0.14
ACGTcount: A:0.50, C:0.10, G:0.09, T:0.31
Consensus pattern (127 bp):
AAACACGACAATTTTTTTTTTAAAACATAAAAAATTTTAAAACACGAGAATTTGTGAAACACGAG
AATTATTGAAAACACGAAAAATTTGAAAACACGAAAATTTAAAAACACAAATATTTTTAGAA
Found at i:17919654 original size:23 final size:22
Alignment explanation
Indices: 17919622--17919690 Score: 72
Period size: 23 Copynumber: 3.0 Consensus size: 22
17919612 ATTATTTTTC
17919622 TTTT-TTCTTTCTTTTCCTT-T
1 TTTTCTTCTTTCTTTTCCTTCT
17919642 TTTTCTCTCCTTT-TTCCTTCCTTCT
1 TTTTCT-T-CTTTCTT--TTCCTTCT
17919667 TTTTCTTCTTTCTTTTTCCTTCT
1 TTTTCTTCTTTC-TTTTCCTTCT
17919690 T
1 T
17919691 CGTTCGGCCC
Statistics
Matches: 41, Mismatches: 0, Indels: 13
0.76 0.00 0.24
Matches are distributed among these distances:
20 4 0.10
21 1 0.02
22 3 0.07
23 17 0.41
24 7 0.17
25 9 0.22
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (22 bp):
TTTTCTTCTTTCTTTTCCTTCT
Found at i:17919681 original size:27 final size:26
Alignment explanation
Indices: 17919616--17919688 Score: 82
Period size: 25 Copynumber: 2.9 Consensus size: 26
17919606 AAAAATATTA
*
17919616 TTTTTCTTTTTTCTTTCTT--TTCCTT
1 TTTTTCTTCTTTCTTT-TTCCTTCCTT
*
17919641 TTTTTC-TC-TCCTTTTTCCTTCCTT
1 TTTTTCTTCTTTCTTTTTCCTTCCTT
17919665 CTTTTTCTTCTTTCTTTTTCCTTC
1 -TTTTTCTTCTTTCTTTTTCCTTC
17919689 TTCGTTCGGC
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
22 2 0.05
23 5 0.12
24 7 0.17
25 12 0.30
26 2 0.05
27 12 0.30
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (26 bp):
TTTTTCTTCTTTCTTTTTCCTTCCTT
Found at i:17919689 original size:14 final size:14
Alignment explanation
Indices: 17919651--17919690 Score: 64
Period size: 13 Copynumber: 2.9 Consensus size: 14
17919641 TTTTTCTCTC
*
17919651 CTTTTTCCTTCCTT
1 CTTTTTCCTTCTTT
17919665 CTTTTT-CTTCTTT
1 CTTTTTCCTTCTTT
17919678 CTTTTTCCTTCTT
1 CTTTTTCCTTCTT
17919691 CGTTCGGCCC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 12 0.50
14 12 0.50
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (14 bp):
CTTTTTCCTTCTTT
Found at i:17920447 original size:30 final size:29
Alignment explanation
Indices: 17920392--17920508 Score: 119
Period size: 30 Copynumber: 3.9 Consensus size: 29
17920382 TGTAATTTTT
* * *
17920392 AGAAAATTTAGGATTAAAATGAAATTTAA
1 AGAAAGTTTAGGGTCAAAATGAAATTTAA
* * *
17920421 TGAAAGTTTAGGAGTCTAAGTGAAATTTAA
1 AGAAAGTTTAGG-GTCAAAATGAAATTTAA
17920451 AGAAAGTTTAAGGGTCAAAATGAAATTT-A
1 AGAAAGTTT-AGGGTCAAAATGAAATTTAA
* *
17920480 GGAAAAGTTTAGGGGTCAAAATGCAATTT
1 AG-AAAGTTTA-GGGTCAAAATGAAATTT
17920509 TTATTTTTTA
Statistics
Matches: 73, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
29 13 0.18
30 57 0.78
31 3 0.04
ACGTcount: A:0.45, C:0.03, G:0.21, T:0.30
Consensus pattern (29 bp):
AGAAAGTTTAGGGTCAAAATGAAATTTAA
Found at i:17920529 original size:14 final size:15
Alignment explanation
Indices: 17920504--17920538 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
17920494 GTCAAAATGC
*
17920504 AATTTTTATTTTTTA
1 AATTTTTATTTTTGA
17920519 AATTTTT-TTTTTGA
1 AATTTTTATTTTTGA
17920533 AATTTT
1 AATTTT
17920539 GAAAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (15 bp):
AATTTTTATTTTTGA
Found at i:17920926 original size:107 final size:104
Alignment explanation
Indices: 17920780--17921097 Score: 487
Period size: 107 Copynumber: 3.0 Consensus size: 104
17920770 CACGTGAGCC
* *
17920780 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG-AAAACAGAATTTGCAAAAGGCTCAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT--AAAAGGCTCAA
*
17920844 CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAA
64 CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAA
* * *
17920885 AAGGCTCAACTCACCTCTCTTCTAATATGAGTTGGTTTTTGAAAAATAGAAATTAAAAGGCTCAA
1 AAGGCTCAACTCACCTCTC-GC-AATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAA
17920950 CTCACCTCTCGCAATATG-GTTGATTTTTGAAAAACAGAAATTAA
64 CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAG--A--AA
17920994 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACT
*
17921059 CATCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAA
66 CACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAA
17921098 CTGAAAAGTA
Statistics
Matches: 195, Mismatches: 10, Indels: 17
0.88 0.05 0.08
Matches are distributed among these distances:
104 2 0.01
105 36 0.18
106 31 0.16
107 75 0.38
108 30 0.15
109 21 0.11
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.30
Consensus pattern (104 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACT
CACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAA
Found at i:17921050 original size:54 final size:54
Alignment explanation
Indices: 17920780--17921097 Score: 495
Period size: 54 Copynumber: 5.9 Consensus size: 54
17920770 CACGTGAGCC
* *
17920780 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG-AAAACAGAATTTGCAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT--AA
*
17920835 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAG--A--AA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
* * *
17920885 AAGGCTCAACTCACCTCTCTTCTAATATGAGTTGGTTTTTGAAAAATAGAAATTAA
1 AAGGCTCAACTCACCTCTC-GC-AATATGAGTTGATTTTTGAAAAACAGAAATTAA
17920941 AAGGCTCAACTCACCTCTCGCAATATG-GTTGATTTTTGAAAAACAGAAATTAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
17920994 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
*
17921048 AAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAA
17921098 CTGAAAAGTA
Statistics
Matches: 246, Mismatches: 9, Indels: 17
0.90 0.03 0.06
Matches are distributed among these distances:
50 21 0.09
51 1 0.00
52 25 0.10
53 51 0.21
54 82 0.33
55 39 0.16
56 27 0.11
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.30
Consensus pattern (54 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
Found at i:17921076 original size:161 final size:160
Alignment explanation
Indices: 17920780--17921097 Score: 491
Period size: 161 Copynumber: 2.0 Consensus size: 160
17920770 CACGTGAGCC
* *
17920780 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAGAATTTGCAAAAGGCTCAAC
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATT-CAAAAGGCTCAAC
* *
17920845 TCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAAAAGGCTCAACTCACCTCTCTTCTAA
65 TCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAAAAGGCTCAACTCACCTCTCTGCTAA
* *
17920910 TATGAGTTGGTTTTTGAAAAATAGAAATTAA
130 TATGAGTTGATTTTTGAAAAACAGAAATTAA
17920941 AAGGCTCAACTCACCTCTCGCAATATG-GTTGATTTTTGAAAAACAGAAATT-AAAAGGCTCAAC
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAACAGAAATTCAAAAGGCTCAAC
*
17921004 TCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACTCATCTCTC-G
65 TCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAG--A--AAAAGGCTCAACTCACCTCTCTG
17921068 C-AATATGAGTTGATTTTTGAAAAACAGAAA
126 CTAATATGAGTTGATTTTTGAAAAACAGAAA
17921098 CTGAAAAGTA
Statistics
Matches: 145, Mismatches: 7, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
159 48 0.33
160 11 0.08
161 65 0.45
162 1 0.01
163 20 0.14
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.30
Consensus pattern (160 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTCAAAAGGCTCAACT
CACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAAAAGGCTCAACTCACCTCTCTGCTAAT
ATGAGTTGATTTTTGAAAAACAGAAATTAA
Found at i:17921212 original size:13 final size:14
Alignment explanation
Indices: 17921184--17921216 Score: 59
Period size: 13 Copynumber: 2.4 Consensus size: 14
17921174 TTTTTGAAAC
17921184 ACAGAAATTAAAAA
1 ACAGAAATTAAAAA
17921198 ACAGAAATT-AAAA
1 ACAGAAATTAAAAA
17921211 ACAGAA
1 ACAGAA
17921217 TTTGAAAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 10 0.53
14 9 0.47
ACGTcount: A:0.70, C:0.09, G:0.09, T:0.12
Consensus pattern (14 bp):
ACAGAAATTAAAAA
Found at i:17921224 original size:14 final size:14
Alignment explanation
Indices: 17921177--17921224 Score: 62
Period size: 14 Copynumber: 3.5 Consensus size: 14
17921167 ATTTTTTTTT
*
17921177 TTGAAACACAGAAA
1 TTGAAAAACAGAAA
*
17921191 TTAAAAAACAGAAA
1 TTGAAAAACAGAAA
*
17921205 TT-AAAAACAGAAT
1 TTGAAAAACAGAAA
17921218 TTGAAAA
1 TTGAAAA
17921225 GACCTCAGCG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
13 12 0.40
14 18 0.60
ACGTcount: A:0.62, C:0.08, G:0.10, T:0.19
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:17921408 original size:72 final size:72
Alignment explanation
Indices: 17921300--17933206 Score: 23778
Period size: 72 Copynumber: 165.4 Consensus size: 72
17921290 ATTAGTAAAG
* * * *
17921300 CAGAAATTGAAAATACCTCAGCGTGCCTTGATGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17921365 TTGAAAA
66 TTGAAAA
17921372 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17921437 TTGAAAA
66 TTGAAAA
17921444 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17921509 TTGAAAA
66 TTGAAAA
17921516 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17921581 TTGAAAA
66 TTGAAAA
17921588 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17921653 TTGAAAA
66 TTGAAAA
17921660 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17921725 TTGAAAA
66 TTGAAAA
17921732 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17921797 TTGAAAA
66 TTGAAAA
17921804 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17921869 TTGAAAA
66 TTGAAAA
17921876 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17921941 TTGAAAA
66 TTGAAAA
17921948 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17922013 TTGAAAA
66 TTGAAAA
17922020 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17922085 TTGAAAA
66 TTGAAAA
17922092 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17922157 TTGAAAA
66 TTGAAAA
17922164 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17922229 TTGAAAA
66 TTGAAAA
17922236 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17922301 TTGAAAA
66 TTGAAAA
17922308 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17922373 TTGAAAA
66 TTGAAAA
17922380 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17922445 TTGAAAA
66 TTGAAAA
17922452 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17922517 TTGAAAA
66 TTGAAAA
17922524 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17922589 TTGAAAA
66 TTGAAAA
17922596 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17922661 TTGAAAA
66 TTGAAAA
17922668 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17922733 TTGAAAA
66 TTGAAAA
17922740 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17922805 TTGAAAA
66 TTGAAAA
17922812 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17922877 TTGAAAA
66 TTGAAAA
17922884 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17922949 TTGAAAA
66 TTGAAAA
17922956 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17923021 TTGAAAA
66 TTGAAAA
17923028 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17923093 TTGAAAA
66 TTGAAAA
17923100 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17923165 TTGAAAA
66 TTGAAAA
17923172 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17923237 TTGAAAA
66 TTGAAAA
17923244 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17923309 TTGAAAA
66 TTGAAAA
17923316 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17923381 TTGAAAA
66 TTGAAAA
17923388 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17923453 TTGAAAA
66 TTGAAAA
17923460 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17923525 TTGAAAA
66 TTGAAAA
17923532 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17923597 TTGAAAA
66 TTGAAAA
17923604 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17923669 TTGAAAA
66 TTGAAAA
17923676 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17923741 TTGAAAA
66 TTGAAAA
17923748 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17923813 TTGAAAA
66 TTGAAAA
17923820 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17923885 TTGAAAA
66 TTGAAAA
17923892 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17923957 TTGAAAA
66 TTGAAAA
17923964 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17924029 TTGAAAA
66 TTGAAAA
17924036 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17924101 TTGAAAA
66 TTGAAAA
17924108 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17924173 TTGAAAA
66 TTGAAAA
17924180 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17924245 TTGAAAA
66 TTGAAAA
17924252 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17924317 TTGAAAA
66 TTGAAAA
17924324 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17924389 TTGAAAA
66 TTGAAAA
17924396 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17924461 TTGAAAA
66 TTGAAAA
17924468 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17924533 TTGAAAA
66 TTGAAAA
17924540 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17924605 TTGAAAA
66 TTGAAAA
17924612 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17924677 TTGAAAA
66 TTGAAAA
17924684 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17924749 TTGAAAA
66 TTGAAAA
17924756 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17924821 TTGAAAA
66 TTGAAAA
17924828 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17924893 TTGAAAA
66 TTGAAAA
17924900 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17924965 TTGAAAA
66 TTGAAAA
17924972 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17925037 TTGAAAA
66 TTGAAAA
17925044 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17925109 TTGAAAA
66 TTGAAAA
17925116 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17925181 TTGAAAA
66 TTGAAAA
17925188 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17925253 TTGAAAA
66 TTGAAAA
17925260 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17925325 TTGAAAA
66 TTGAAAA
17925332 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17925397 TTGAAAA
66 TTGAAAA
17925404 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17925469 TTGAAAA
66 TTGAAAA
17925476 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17925541 TTGAAAA
66 TTGAAAA
17925548 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17925613 TTGAAAA
66 TTGAAAA
17925620 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17925685 TTGAAAA
66 TTGAAAA
17925692 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17925757 TTGAAAA
66 TTGAAAA
17925764 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17925829 TTGAAAA
66 TTGAAAA
17925836 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17925901 TTGAAAA
66 TTGAAAA
17925908 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17925973 TTGAAAA
66 TTGAAAA
17925980 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17926045 TTGAAAA
66 TTGAAAA
17926052 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17926117 TTGAAAA
66 TTGAAAA
17926124 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17926189 TTGAAAA
66 TTGAAAA
17926196 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17926261 TTGAAAA
66 TTGAAAA
17926268 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17926333 TTGAAAA
66 TTGAAAA
17926340 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17926405 TTGAAAA
66 TTGAAAA
17926412 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17926477 TTGAAAA
66 TTGAAAA
17926484 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17926549 TTGAAAA
66 TTGAAAA
17926556 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17926621 TTGAAAA
66 TTGAAAA
17926628 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17926693 TTGAAAA
66 TTGAAAA
17926700 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17926765 TTGAAAA
66 TTGAAAA
17926772 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17926837 TTGAAAA
66 TTGAAAA
17926844 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17926909 TTGAAAA
66 TTGAAAA
17926916 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17926981 TTGAAAA
66 TTGAAAA
17926988 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17927053 TTGAAAA
66 TTGAAAA
17927060 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17927125 TTGAAAA
66 TTGAAAA
17927132 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17927197 TTGAAAA
66 TTGAAAA
17927204 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17927269 TTGAAAA
66 TTGAAAA
17927276 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17927341 TTGAAAA
66 TTGAAAA
17927348 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17927413 TTGAAAA
66 TTGAAAA
17927420 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17927485 TTGAAAA
66 TTGAAAA
17927492 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17927557 TTGAAAA
66 TTGAAAA
17927564 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17927629 TTGAAAA
66 TTGAAAA
17927636 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17927701 TTGAAAA
66 TTGAAAA
17927708 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17927773 TTGAAAA
66 TTGAAAA
17927780 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17927845 TTGAAAA
66 TTGAAAA
17927852 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17927917 TTGAAAA
66 TTGAAAA
17927924 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17927989 TTGAAAA
66 TTGAAAA
17927996 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17928061 TTGAAAA
66 TTGAAAA
17928068 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17928133 TTGAAAA
66 TTGAAAA
17928140 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17928205 TTGAAAA
66 TTGAAAA
17928212 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17928277 TTGAAAA
66 TTGAAAA
17928284 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17928349 TTGAAAA
66 TTGAAAA
17928356 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17928421 TTGAAAA
66 TTGAAAA
17928428 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17928493 TTGAAAA
66 TTGAAAA
17928500 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17928565 TTGAAAA
66 TTGAAAA
17928572 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17928637 TTGAAAA
66 TTGAAAA
17928644 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17928709 TTGAAAA
66 TTGAAAA
17928716 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17928781 TTGAAAA
66 TTGAAAA
17928788 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17928853 TTGAAAA
66 TTGAAAA
17928860 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17928925 TTGAAAA
66 TTGAAAA
17928932 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17928997 TTGAAAA
66 TTGAAAA
17929004 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17929069 TTGAAAA
66 TTGAAAA
17929076 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17929141 TTGAAAA
66 TTGAAAA
17929148 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17929213 TTGAAAA
66 TTGAAAA
17929220 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17929285 TTGAAAA
66 TTGAAAA
17929292 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17929357 TTGAAAA
66 TTGAAAA
17929364 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17929429 TTGAAAA
66 TTGAAAA
17929436 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17929501 TTGAAAA
66 TTGAAAA
17929508 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17929573 TTGAAAA
66 TTGAAAA
17929580 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17929645 TTGAAAA
66 TTGAAAA
17929652 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17929717 TTGAAAA
66 TTGAAAA
17929724 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17929789 TTGAAAA
66 TTGAAAA
17929796 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17929861 TTGAAAA
66 TTGAAAA
17929868 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17929933 TTGAAAA
66 TTGAAAA
17929940 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17930005 TTGAAAA
66 TTGAAAA
17930012 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17930077 TTGAAAA
66 TTGAAAA
17930084 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17930149 TTGAAAA
66 TTGAAAA
17930156 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17930221 TTGAAAA
66 TTGAAAA
17930228 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17930293 TTGAAAA
66 TTGAAAA
17930300 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17930365 TTGAAAA
66 TTGAAAA
17930372 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17930437 TTGAAAA
66 TTGAAAA
17930444 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17930509 TTGAAAA
66 TTGAAAA
17930516 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17930581 TTGAAAA
66 TTGAAAA
17930588 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17930653 TTGAAAA
66 TTGAAAA
17930660 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17930725 TTGAAAA
66 TTGAAAA
17930732 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17930797 TTGAAAA
66 TTGAAAA
17930804 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17930869 TTGAAAA
66 TTGAAAA
17930876 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17930941 TTGAAAA
66 TTGAAAA
17930948 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17931013 TTGAAAA
66 TTGAAAA
17931020 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17931085 TTGAAAA
66 TTGAAAA
17931092 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17931157 TTGAAAA
66 TTGAAAA
17931164 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17931229 TTGAAAA
66 TTGAAAA
17931236 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17931301 TTGAAAA
66 TTGAAAA
17931308 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17931373 TTGAAAA
66 TTGAAAA
17931380 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17931445 TTGAAAA
66 TTGAAAA
17931452 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17931517 TTGAAAA
66 TTGAAAA
17931524 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17931589 TTGAAAA
66 TTGAAAA
17931596 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17931661 TTGAAAA
66 TTGAAAA
17931668 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17931733 TTGAAAA
66 TTGAAAA
17931740 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17931805 TTGAAAA
66 TTGAAAA
17931812 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17931877 TTGAAAA
66 TTGAAAA
17931884 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17931949 TTGAAAA
66 TTGAAAA
17931956 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17932021 TTGAAAA
66 TTGAAAA
17932028 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17932093 TTGAAAA
66 TTGAAAA
17932100 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17932165 TTGAAAA
66 TTGAAAA
17932172 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17932237 TTGAAAA
66 TTGAAAA
17932244 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17932309 TTGAAAA
66 TTGAAAA
17932316 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17932381 TTGAAAA
66 TTGAAAA
17932388 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17932453 TTGAAAA
66 TTGAAAA
17932460 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17932525 TTGAAAA
66 TTGAAAA
17932532 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17932597 TTGAAAA
66 TTGAAAA
17932604 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17932669 TTGAAAA
66 TTGAAAA
17932676 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17932741 TTGAAAA
66 TTGAAAA
17932748 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17932813 TTGAAAA
66 TTGAAAA
17932820 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17932885 TTGAAAA
66 TTGAAAA
17932892 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17932957 TTGAAAA
66 TTGAAAA
17932964 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17933029 TTGAAAA
66 TTGAAAA
17933036 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17933101 TTGAAAA
66 TTGAAAA
17933108 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
17933173 TTGAAAA
66 TTGAAAA
17933180 CAGAAATTGAAATTACCTCAACGTGTC
1 CAGAAATTGAAATTACCTCAACGTGTC
17933207 CTTAAACTTA
Statistics
Matches: 11831, Mismatches: 4, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 11831 1.00
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (72 bp):
CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATT
TTGAAAA
Found at i:17933536 original size:74 final size:73
Alignment explanation
Indices: 17933339--17933567 Score: 302
Period size: 72 Copynumber: 3.2 Consensus size: 73
17933329 ATGATTATTG
* ** * *
17933339 AAAAATTAAAGTTTTCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA-ATT
1 AAAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
17933403 TTGAAAAC
66 TTGAAAAC
*
17933411 AAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
1 AAAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
*
17933476 TTTAACAAC
66 TTGAA-AAC
* ** * *
17933485 AGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAATTGA--TT
1 AAAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
17933548 TTGAAAAAC
66 TTG-AAAAC
*
17933557 ATAAATTAAAA
1 AAAAATTAAAA
17933568 GGCTTAACTC
Statistics
Matches: 139, Mismatches: 15, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
72 73 0.53
73 8 0.06
74 58 0.42
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.31
Consensus pattern (73 bp):
AAAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
TTGAAAAC
Found at i:17945517 original size:18 final size:18
Alignment explanation
Indices: 17945496--17945934 Score: 110
Period size: 17 Copynumber: 24.6 Consensus size: 18
17945486 GAAAGTTTTT
* *
17945496 TTTTTTAAAATACGAGAA
1 TTTTTGAAAACACGAGAA
17945514 TTTTTGAAAACACGAGAA
1 TTTTTGAAAACACGAGAA
*
17945532 --TTTGTAAACACGA-ATA
1 TTTTTGAAAACACGAGA-A
* *
17945548 TTTTAG-AAACACGAAAA
1 TTTTTGAAAACACGAGAA
*
17945565 TTTTTGAAAAAAAAAACGA-AA
1 TTTTTG----AAAACACGAGAA
* * *
17945586 TTTTCTTAAAACACGACATTT
1 TTTT-TGAAAACACGAGA--A
*
17945607 TTTTTG-AAACACGGGAA
1 TTTTTGAAAACACGAGAA
* * *
17945624 TTTTT-AAAACAAGACATT
1 TTTTTGAAAACACGAGA-A
17945642 TTTTTG-AAACA--A-AA
1 TTTTTGAAAACACGAGAA
*
17945656 TTTTTTCTTAAAA-A--A-AA
1 --TTTT-TGAAAACACGAGAA
*
17945673 -TTTT--AAATACGAGAA
1 TTTTTGAAAACACGAGAA
*
17945688 TTTTT-AAAACACGAAAA
1 TTTTTGAAAACACGAGAA
*
17945705 TTTTT-AAAACACGGAAATA
1 TTTTTGAAAACAC-GAGA-A
*
17945724 TTTTTTTTTAAAACACGA-AA
1 ---TTTTTGAAAACACGAGAA
* *
17945744 TTTTTTTTTGAAAACAAGAAAA
1 ----TTTTTGAAAACACGAGAA
*
17945766 TTTTTG-AAACACTAGAA
1 TTTTTGAAAACACGAGAA
17945783 -TTTTGAAAACACGA-AGA
1 TTTTTGAAAACACGAGA-A
*
17945800 TTTTTG-AAACATGAGAA
1 TTTTTGAAAACACGAGAA
*
17945817 TTTTT-AAAAGCACGAGGA
1 TTTTTGAAAA-CACGAGAA
* *
17945835 TTATTGAAAGCACGA-AGA
1 TTTTTGAAAACACGAGA-A
* * *
17945853 TTTAT-AAAAAACGACAA
1 TTTTTGAAAACACGAGAA
*
17945870 TTTTTG-AAATACGAGAAA
1 TTTTTGAAAACACGAG-AA
* * *
17945888 TTTTT-TAAACGCGAAAA
1 TTTTTGAAAACACGAGAA
** *
17945905 TTTTTTTCAAACACGAAAA
1 -TTTTTGAAAACACGAGAA
*
17945924 CTTTTGAAAAC
1 TTTTTGAAAAC
17945935 GCGAAAATTC
Statistics
Matches: 325, Mismatches: 48, Indels: 96
0.69 0.10 0.20
Matches are distributed among these distances:
11 3 0.01
12 1 0.00
13 1 0.00
14 4 0.01
15 4 0.01
16 28 0.09
17 105 0.32
18 103 0.32
19 23 0.07
20 2 0.01
21 27 0.08
22 17 0.05
23 7 0.02
ACGTcount: A:0.45, C:0.10, G:0.11, T:0.33
Consensus pattern (18 bp):
TTTTTGAAAACACGAGAA
Found at i:17945535 original size:16 final size:16
Alignment explanation
Indices: 17945502--17945567 Score: 53
Period size: 16 Copynumber: 3.9 Consensus size: 16
17945492 TTTTTTTTTT
*
17945502 AAAATACGAGAATTTTTG
1 AAAACACGAGAA--TTTG
17945520 AAAACACGAGAATTTG
1 AAAACACGAGAATTTG
* *
17945536 TAAACACGA-ATATTTT
1 AAAACACGAGA-ATTTG
*
17945552 AGAAACACGAAAATTT
1 A-AAACACGAGAATTT
17945568 TTGAAAAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
15 1 0.02
16 16 0.39
17 12 0.29
18 12 0.29
ACGTcount: A:0.48, C:0.11, G:0.14, T:0.27
Consensus pattern (16 bp):
AAAACACGAGAATTTG
Found at i:17945667 original size:36 final size:37
Alignment explanation
Indices: 17945585--17945668 Score: 91
Period size: 36 Copynumber: 2.3 Consensus size: 37
17945575 AAAAAACGAA
* ***
17945585 ATTTTCTTAAAACACGACATTTTTTTTGAAACACGGG
1 ATTTTCTTAAAACAAGACATTTTTTTTGAAACAAAAG
* *
17945622 AATTT-TTAAAACAAGACA-TTTTTTTGAAACAAAAT
1 ATTTTCTTAAAACAAGACATTTTTTTTGAAACAAAAG
*
17945657 TTTTTCTTAAAA
1 ATTTTCTTAAAA
17945669 AAAATTTTAA
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
35 16 0.42
36 18 0.47
37 4 0.11
ACGTcount: A:0.39, C:0.12, G:0.08, T:0.40
Consensus pattern (37 bp):
ATTTTCTTAAAACAAGACATTTTTTTTGAAACAAAAG
Found at i:17945706 original size:17 final size:17
Alignment explanation
Indices: 17945668--17945943 Score: 149
Period size: 17 Copynumber: 15.4 Consensus size: 17
17945658 TTTTCTTAAA
* *
17945668 AAAAATTTT-AAATACG
1 AAAATTTTTAAAACACG
*
17945684 AGAATTTTTAAAACACG
1 AAAATTTTTAAAACACG
17945701 AAAATTTTTAAAACACGG
1 AAAATTTTTAAAACAC-G
17945719 AAATATTTTTTTTTAAAACACG
1 AAA-A----TTTTTAAAACACG
* *
17945741 AAATTTTTTTTTGAAAACAAG
1 AAA---ATTTTT-AAAACACG
* *
17945762 AAAATTTTTGAAACACT
1 AAAATTTTTAAAACACG
* *
17945779 AGAATTTTGAAAACACG
1 AAAATTTTTAAAACACG
* * *
17945796 AAGATTTTTGAAACATG
1 AAAATTTTTAAAACACG
*
17945813 AGAATTTTTAAAAGCACG
1 AAAATTTTTAAAA-CACG
** * *
17945831 AGGATTATTGAAAGCACG
1 AAAATT-TTTAAAACACG
* * *
17945849 AAGATTTATAAAAAACG
1 AAAATTTTTAAAACACG
* * *
17945866 ACAATTTTTGAAATACG
1 AAAATTTTTAAAACACG
* *
17945883 AGAAATTTTTTAAACGCG
1 A-AAATTTTTAAAACACG
*
17945901 AAAATTTTTTTCAAACACG
1 AAAA--TTTTTAAAACACG
* *
17945920 AAAACTTTTGAAAACGCG
1 AAAA-TTTTTAAAACACG
17945938 AAAATT
1 AAAATT
17945944 CGAAAATTTC
Statistics
Matches: 199, Mismatches: 46, Indels: 29
0.73 0.17 0.11
Matches are distributed among these distances:
16 7 0.04
17 86 0.43
18 53 0.27
19 21 0.11
20 5 0.03
21 10 0.05
22 4 0.02
23 12 0.06
24 1 0.01
ACGTcount: A:0.46, C:0.10, G:0.12, T:0.32
Consensus pattern (17 bp):
AAAATTTTTAAAACACG
Found at i:17945743 original size:22 final size:22
Alignment explanation
Indices: 17945705--17945770 Score: 91
Period size: 21 Copynumber: 3.0 Consensus size: 22
17945695 AACACGAAAA
17945705 TTTTTAAAACACGGAAATATTTT
1 TTTTTAAAACAC-GAAATATTTT
17945728 TTTTTAAAACACGAAAT-TTTT
1 TTTTTAAAACACGAAATATTTT
* *
17945749 TTTTGAAAACAAGAAA-ATTTT
1 TTTTTAAAACACGAAATATTTT
17945770 T
1 T
17945771 GAAACACTAG
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
21 23 0.57
22 5 0.12
23 12 0.30
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.44
Consensus pattern (22 bp):
TTTTTAAAACACGAAATATTTT
Found at i:17945910 original size:19 final size:19
Alignment explanation
Indices: 17945888--17945943 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 19
17945878 ATACGAGAAA
17945888 TTTTTT-AAACGCGAAAAT
1 TTTTTTAAAACGCGAAAAT
* *
17945906 TTTTTTCAAACACGAAAA-
1 TTTTTTAAAACGCGAAAAT
* *
17945924 CTTTTGAAAACGCGAAAAT
1 TTTTTTAAAACGCGAAAAT
17945943 T
1 T
17945944 CGAAAATTTC
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
18 20 0.67
19 10 0.33
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.34
Consensus pattern (19 bp):
TTTTTTAAAACGCGAAAAT
Found at i:17945987 original size:18 final size:17
Alignment explanation
Indices: 17945938--17945988 Score: 57
Period size: 18 Copynumber: 2.9 Consensus size: 17
17945928 TGAAAACGCG
17945938 AAAATTCGAAAATTTCT
1 AAAATTCGAAAATTTCT
* * *
17945955 AAAATACGAGTAATTTTT
1 AAAATTCGA-AAATTTCT
17945973 AAAGATTCGAAAATTT
1 AAA-ATTCGAAAATTT
17945989 GAAACAAGAA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
17 8 0.30
18 14 0.52
19 5 0.19
ACGTcount: A:0.47, C:0.08, G:0.10, T:0.35
Consensus pattern (17 bp):
AAAATTCGAAAATTTCT
Found at i:17946817 original size:29 final size:29
Alignment explanation
Indices: 17946784--17946900 Score: 94
Period size: 30 Copynumber: 3.9 Consensus size: 29
17946774 TGTAATTTTT
*
17946784 AGAAAATTTAGGATTAAAATGAAATTTAA
1 AGAAAATTTAGGGTTAAAATGAAATTTAA
* * *
17946813 TGAAAGTTTAGGGGTCT-AAGTGAAATTTAA
1 AGAAAATTTA-GGGT-TAAAATGAAATTTAA
* *
17946843 AGAAAGTTTAAGGGTCAAAATGAAATTT-A
1 AGAAAATTT-AGGGTTAAAATGAAATTTAA
* * *
17946872 GGAAAAGTTTAGGTGTCAAAATGCAATTT
1 AGAAAA-TTTAGG-GTTAAAATGAAATTT
17946901 TTATTTTTTA
Statistics
Matches: 72, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
29 16 0.22
30 54 0.75
31 2 0.03
ACGTcount: A:0.44, C:0.03, G:0.21, T:0.31
Consensus pattern (29 bp):
AGAAAATTTAGGGTTAAAATGAAATTTAA
Found at i:17946839 original size:30 final size:30
Alignment explanation
Indices: 17946799--17946900 Score: 125
Period size: 30 Copynumber: 3.4 Consensus size: 30
17946789 ATTTAGGATT
*
17946799 AAAATGAAATTTAATGAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
* * *
17946829 TAAGTGAAATTTAAAGAAAGTTTAAGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
* *
17946859 AAAATGAAATTT-AGGAAAAGTTTAGGTGTC
1 AAAATGAAATTTAAAG-AAAGTTTAGGGGTC
*
17946889 AAAATGCAATTT
1 AAAATGAAATTT
17946901 TTATTTTTTA
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
29 2 0.03
30 59 0.97
ACGTcount: A:0.44, C:0.04, G:0.22, T:0.30
Consensus pattern (30 bp):
AAAATGAAATTTAAAGAAAGTTTAGGGGTC
Found at i:17946923 original size:16 final size:17
Alignment explanation
Indices: 17946898--17946933 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
17946888 CAAAATGCAA
17946898 TTTTTATTTTTT-AAAT
1 TTTTTATTTTTTGAAAT
*
17946914 TTTTTTTTTTTTGAAAT
1 TTTTTATTTTTTGAAAT
17946931 TTT
1 TTT
17946934 GAAAATTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.78
Consensus pattern (17 bp):
TTTTTATTTTTTGAAAT
Found at i:17946924 original size:17 final size:17
Alignment explanation
Indices: 17946898--17946933 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
17946888 CAAAATGCAA
*
17946898 TTTTTATTTTTTAAATT
1 TTTTTATTTTTGAAATT
*
17946915 TTTTTTTTTTTGAAATT
1 TTTTTATTTTTGAAATT
17946932 TT
1 TT
17946934 GAAAATTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.78
Consensus pattern (17 bp):
TTTTTATTTTTGAAATT
Found at i:17947391 original size:29 final size:29
Alignment explanation
Indices: 17947345--17947440 Score: 90
Period size: 29 Copynumber: 3.2 Consensus size: 29
17947335 AAAGTTGTAG
*
17947345 ATTTAGTCCACATA-TTTT-AATTTGATCAA
1 ATTTAGTCC-TATACTTTTAAATTT-ATCAA
17947374 ATTTAGTCCTATACTTTTAAATTTATCAA
1 ATTTAGTCCTATACTTTTAAATTTATCAA
* * *
17947403 TTTTAGTCACTTTACTTTTCAAAATTT-TAAA
1 ATTTAGTC-CTATACTTTT--AAATTTATCAA
17947434 ATTTAGT
1 ATTTAGT
17947441 TTTAACCCAA
Statistics
Matches: 57, Mismatches: 5, Indels: 8
0.81 0.07 0.11
Matches are distributed among these distances:
28 3 0.05
29 25 0.44
30 14 0.25
31 9 0.16
32 6 0.11
ACGTcount: A:0.33, C:0.12, G:0.05, T:0.49
Consensus pattern (29 bp):
ATTTAGTCCTATACTTTTAAATTTATCAA
Found at i:17951805 original size:75 final size:75
Alignment explanation
Indices: 17951678--17952085 Score: 523
Period size: 75 Copynumber: 5.4 Consensus size: 75
17951668 GCAGAGGAGG
* * * * *
17951678 TTGCACCCAGTGCTAGTCGGAT-TAATCGACGGTATTGAA-TGTGAGCCTAGCTCTAGTTGAATA
1 TTGCACCCAGTGCTAGTCGGATAT-ACCGACGATAAT-AATTGTGAGCCCAGCTCTAGTTGGATA
* **
17951741 ATCCAATGATAT
64 AACCAACAATAT
* * *
17951753 CTGCACCCAGTGCTAGTCGGATATATCGACGATAATAATTGTAAGCCCAGCTCTAGTTGGATAAA
1 TTGCACCCAGTGCTAGTCGGATATACCGACGATAATAATTGTGAGCCCAGCTCTAGTTGGATAAA
17951818 CCAACAATAT
66 CCAACAATAT
* * * *
17951828 TTACACCCAGTACTAGTCGGATATACCGACGATAATACTTGTGAGCCCAACTCTAGTTGGATAAA
1 TTGCACCCAGTGCTAGTCGGATATACCGACGATAATAATTGTGAGCCCAGCTCTAGTTGGATAAA
17951893 CCAACAATAT
66 CCAACAATAT
** * * *
17951903 TTGCACCCAAAGCTAGTTGGATATACCGATGATAATAATTGTGAGCCCAGCTCTAGTTAGATAAA
1 TTGCACCCAGTGCTAGTCGGATATACCGACGATAATAATTGTGAGCCCAGCTCTAGTTGGATAAA
17951968 CCAACAATAT
66 CCAACAATAT
* * *
17951978 TTGCACCCAGTGCTAGTCGGATATACCGACGATAATAATTGTTAGCCTAGCTCTAGTTGGATAAG
1 TTGCACCCAGTGCTAGTCGGATATACCGACGATAATAATTGTGAGCCCAGCTCTAGTTGGATAAA
* ** *
17952043 TCAACGGTAA
66 CCAACAATAT
* *
17952053 TTGCACCCAGCGCTAGTCGGATAAACCGACGAT
1 TTGCACCCAGTGCTAGTCGGATATACCGACGAT
17952086 TATGTGACCA
Statistics
Matches: 292, Mismatches: 39, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
74 2 0.01
75 289 0.99
76 1 0.00
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (75 bp):
TTGCACCCAGTGCTAGTCGGATATACCGACGATAATAATTGTGAGCCCAGCTCTAGTTGGATAAA
CCAACAATAT
Found at i:17951844 original size:35 final size:34
Alignment explanation
Indices: 17951798--17952000 Score: 106
Period size: 35 Copynumber: 5.5 Consensus size: 34
17951788 TAATTGTAAG
17951798 CCCAGCTCTAGTTGGATAAACCAACAATATTTACA
1 CCCAG-TCTAGTTGGATAAACCAACAATATTTACA
* * *
17951833 CCCAGTACTAGTCGGATATACCGACGATAATACTTGTGAGC-
1 CCCAGT-CTAGTTGGATAAACC-A--ACAATA-TT-T-A-CA
* * *
17951874 CCAACTCTAGTTGGATAAACCAACAATATTTGCA
1 CCCAGTCTAGTTGGATAAACCAACAATATTTACA
* * *
17951908 CCCAAAG-CTAGTTGGATATACCGATGATAATAATTGTGA-G
1 CCC--AGTCTAGTTGGATAAACC-A--ACAAT-ATT-T-ACA
* *
17951948 CCCAGCTCTAGTTAGATAAACCAACAATATTTGCA
1 CCCAG-TCTAGTTGGATAAACCAACAATATTTACA
*
17951983 CCCAGTGCTAGTCGGATA
1 CCCAGT-CTAGTTGGATA
17952001 TACCGACGAT
Statistics
Matches: 125, Mismatches: 22, Indels: 42
0.66 0.12 0.22
Matches are distributed among these distances:
33 1 0.01
34 4 0.03
35 48 0.38
36 8 0.06
37 9 0.07
38 11 0.09
39 7 0.06
40 31 0.25
41 5 0.04
42 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (34 bp):
CCCAGTCTAGTTGGATAAACCAACAATATTTACA
Found at i:17954019 original size:40 final size:39
Alignment explanation
Indices: 17953962--17954150 Score: 218
Period size: 39 Copynumber: 4.8 Consensus size: 39
17953952 ATATTTGATG
* *
17953962 TGTATCCGGGCTTAAAGACCCGCAGGCTAT-ATGTTGGAAT
1 TGTATCCGGACTT-AAGACCCGCAGGCT-TCGTGTTGGAAT
* *
17954002 TATATCCGGGCTTAAAGACCCGCAGGCTTCGTGTTGGAAT
1 TGTATCCGGACTT-AAGACCCGCAGGCTTCGTGTTGGAAT
** *
17954042 TGTATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAAT
1 TGTATCCGGACTTAAGACCCGCAGGCTTCGTGTTGGAAT
* * * *
17954081 TGTATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGTAC
1 TGTATCCGGACTTAAGACCCGCAGGCTTCGTGTTGGAAT
* **
17954120 TATATCCGGACTTAAGGTCCGCAGGCTTCGT
1 TGTATCCGGACTTAAGACCCGCAGGCTTCGT
17954151 ACTGGTACTA
Statistics
Matches: 136, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 89 0.65
40 47 0.35
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (39 bp):
TGTATCCGGACTTAAGACCCGCAGGCTTCGTGTTGGAAT
Found at i:17954079 original size:39 final size:39
Alignment explanation
Indices: 17953996--17954187 Score: 231
Period size: 39 Copynumber: 4.9 Consensus size: 39
17953986 GGCTATATGT
* ** *
17953996 TGGAATTATATCCGGGCTTAAAGACCCGCAGGCTTCGTGT
1 TGGAATTATATCCGGACTT-AAGGTCCGCAGGCTTCGTGC
*
17954036 TGGAATTGTATCCGGACTTAAGGTCCGCAGGCTTCGTGC
1 TGGAATTATATCCGGACTTAAGGTCCGCAGGCTTCGTGC
* *
17954075 TGGAATTGTATCCGGACTTAAGATCCGCAGGCTTCGTGC
1 TGGAATTATATCCGGACTTAAGGTCCGCAGGCTTCGTGC
* * *
17954114 TGGTACTATATCCGGACTTAAGGTCCGCAGGCTTCGTAC
1 TGGAATTATATCCGGACTTAAGGTCCGCAGGCTTCGTGC
* * * * *
17954153 TGGTACTATATCCGGGCTTAAAGTCCCGTAGGCTT
1 TGGAATTATATCCGGACTTAAGGT-CCGCAGGCTT
17954188 TGTATTGGTG
Statistics
Matches: 137, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
39 111 0.81
40 26 0.19
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (39 bp):
TGGAATTATATCCGGACTTAAGGTCCGCAGGCTTCGTGC
Found at i:17954135 original size:78 final size:78
Alignment explanation
Indices: 17953996--17954187 Score: 258
Period size: 78 Copynumber: 2.4 Consensus size: 78
17953986 GGCTATATGT
* * *
17953996 TGGAATTATATCCGGGCTTAAAGACCCGCAGGCTTCGTGTTGGAATTGTATCCGGACTTAAGGTC
1 TGGAATTATATCCGGGCTT-AAGACCCGCAGGCTTCGTGCTGGAACTATATCCGGACTTAAGGTC
*
17954061 CGCAGGCTTCGTGC
65 CGCAGGCTTCGTAC
* * * *
17954075 TGGAATTGTATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGTACTATATCCGGACTTAAGGTCC
1 TGGAATTATATCCGGGCTTAAGACCCGCAGGCTTCGTGCTGGAACTATATCCGGACTTAAGGTCC
17954140 GCAGGCTTCGTAC
66 GCAGGCTTCGTAC
* * * *
17954153 TGGTACTATATCCGGGCTTAAAGTCCCGTAGGCTT
1 TGGAATTATATCCGGGCTT-AAGACCCGCAGGCTT
17954188 TGTATTGGTG
Statistics
Matches: 97, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
78 68 0.70
79 29 0.30
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (78 bp):
TGGAATTATATCCGGGCTTAAGACCCGCAGGCTTCGTGCTGGAACTATATCCGGACTTAAGGTCC
GCAGGCTTCGTAC
Found at i:17958977 original size:40 final size:38
Alignment explanation
Indices: 17958922--17959093 Score: 182
Period size: 39 Copynumber: 4.4 Consensus size: 38
17958912 ATTTGATGTG
* **
17958922 TATCCGGGCTTAAAGACCCGCAGGTTATATGCTGGAATTA
1 TATCCGGACTT-AAGACCCGCAGGTT-CGTGCTGGAATTA
* * *
17958962 TATCCGGGCTTAAAGACCCGCAAGCTTCGTGCTGGAATTG
1 TATCCGGACTT-AAGACCCGC-AGGTTCGTGCTGGAATTA
** *
17959002 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTT
1 TATCCGGACTTAAGACCCGCAGG-TTCGTGCTGGAATTA
* * *
17959041 TATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGTACTA
1 TATCCGGACTTAAGACCCGCAGG-TTCGTGCTGGAATTA
17959080 TATCCGGACTTAAG
1 TATCCGGACTTAAG
17959094 GTTCGTAGGC
Statistics
Matches: 117, Mismatches: 13, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
38 2 0.02
39 70 0.60
40 41 0.35
41 4 0.03
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (38 bp):
TATCCGGACTTAAGACCCGCAGGTTCGTGCTGGAATTA
Found at i:17959033 original size:39 final size:39
Alignment explanation
Indices: 17958951--17959145 Score: 219
Period size: 39 Copynumber: 4.9 Consensus size: 39
17958941 GCAGGTTATA
* ** *
17958951 TGCTGGAATTATATCCGGGCTTAAAGACCCGCAAGCTTCG
1 TGCTGGAATTATATCCGGACTT-AAGGTCCGCAGGCTTCG
*
17958991 TGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTTCG
1 TGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTTCG
* *
17959030 TGCTGGAATTTTATCCGGACTTAAGATCCGCAGGCTTCG
1 TGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTTCG
* * * *
17959069 TGCTGGTACTATATCCGGACTTAAGGTTCGTAGGCTTCG
1 TGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTTCG
* * * * * *
17959108 TACTGGTACTATATCCGGGCTTAAAGTCCCGTAGGCTT
1 TGCTGGAATTATATCCGGACTTAAGGT-CCGCAGGCTT
17959146 TGTGTTGGTG
Statistics
Matches: 137, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
39 108 0.79
40 29 0.21
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.30
Consensus pattern (39 bp):
TGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTTCG
Found at i:17959091 original size:78 final size:78
Alignment explanation
Indices: 17958951--17959131 Score: 245
Period size: 78 Copynumber: 2.3 Consensus size: 78
17958941 GCAGGTTATA
* *
17958951 TGCTGGAATTATATCCGGGCTTAAAGACCCGCAAGCTTCGTGCTGGAATTGTATCCGGACTTAAG
1 TGCTGGAATTATATCCGGGCTT-AAGACCCGCAAGCTTCGTGCTGGAACTATATCCGGACTTAAG
17959016 GTCCGCAGGCTTCG
65 GTCCGCAGGCTTCG
* * * * *
17959030 TGCTGGAATTTTATCCGGACTTAAGATCCGCAGGCTTCGTGCTGGTACTATATCCGGACTTAAGG
1 TGCTGGAATTATATCCGGGCTTAAGACCCGCAAGCTTCGTGCTGGAACTATATCCGGACTTAAGG
* *
17959095 TTCGTAGGCTTCG
66 TCCGCAGGCTTCG
* * *
17959108 TACTGGTACTATATCCGGGCTTAA
1 TGCTGGAATTATATCCGGGCTTAA
17959132 AGTCCCGTAG
Statistics
Matches: 88, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
78 68 0.77
79 20 0.23
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.30
Consensus pattern (78 bp):
TGCTGGAATTATATCCGGGCTTAAGACCCGCAAGCTTCGTGCTGGAACTATATCCGGACTTAAGG
TCCGCAGGCTTCG
Found at i:17959945 original size:180 final size:180
Alignment explanation
Indices: 17959702--17960079 Score: 756
Period size: 180 Copynumber: 2.1 Consensus size: 180
17959692 GTAATGAAAG
17959702 CTTAATGAGTCTAGTTTCTTATAAAAGAAACTGTGTAAGCAAAAGAATTATCGATAATGAGATGT
1 CTTAATGAGTCTAGTTTCTTATAAAAGAAACTGTGTAAGCAAAAGAATTATCGATAATGAGATGT
17959767 TTGAAGTGGCGTGGGACAGAGTCAAAATGACTTCGAGGTCCCCTGTTCTATTTTTAGAAAATCAT
66 TTGAAGTGGCGTGGGACAGAGTCAAAATGACTTCGAGGTCCCCTGTTCTATTTTTAGAAAATCAT
17959832 TTTAAATTGTTCAATGATGGTTATAAAATAAAATTTATATTCTTTGACTC
131 TTTAAATTGTTCAATGATGGTTATAAAATAAAATTTATATTCTTTGACTC
17959882 CTTAATGAGTCTAGTTTCTTATAAAAGAAACTGTGTAAGCAAAAGAATTATCGATAATGAGATGT
1 CTTAATGAGTCTAGTTTCTTATAAAAGAAACTGTGTAAGCAAAAGAATTATCGATAATGAGATGT
17959947 TTGAAGTGGCGTGGGACAGAGTCAAAATGACTTCGAGGTCCCCTGTTCTATTTTTAGAAAATCAT
66 TTGAAGTGGCGTGGGACAGAGTCAAAATGACTTCGAGGTCCCCTGTTCTATTTTTAGAAAATCAT
17960012 TTTAAATTGTTCAATGATGGTTATAAAATAAAATTTATATTCTTTGACTC
131 TTTAAATTGTTCAATGATGGTTATAAAATAAAATTTATATTCTTTGACTC
17960062 CTTAATGAGTCTAGTTTC
1 CTTAATGAGTCTAGTTTC
17960080 AAATGAAATA
Statistics
Matches: 198, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
180 198 1.00
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36
Consensus pattern (180 bp):
CTTAATGAGTCTAGTTTCTTATAAAAGAAACTGTGTAAGCAAAAGAATTATCGATAATGAGATGT
TTGAAGTGGCGTGGGACAGAGTCAAAATGACTTCGAGGTCCCCTGTTCTATTTTTAGAAAATCAT
TTTAAATTGTTCAATGATGGTTATAAAATAAAATTTATATTCTTTGACTC
Found at i:17962082 original size:21 final size:21
Alignment explanation
Indices: 17962058--17962112 Score: 76
Period size: 21 Copynumber: 2.6 Consensus size: 21
17962048 GGGTATCATC
*
17962058 TTTTTAGTGAGTTAGGGTAGA
1 TTTTTAATGAGTTAGGGTAGA
17962079 TTTTTAATGAGTTAGGGTAG-
1 TTTTTAATGAGTTAGGGTAGA
*
17962099 TTTGTAACTGAGTT
1 TTTTTAA-TGAGTT
17962113 GGGCAGCTTC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 6 0.19
21 25 0.81
ACGTcount: A:0.24, C:0.02, G:0.29, T:0.45
Consensus pattern (21 bp):
TTTTTAATGAGTTAGGGTAGA
Found at i:17962803 original size:2 final size:2
Alignment explanation
Indices: 17962796--17962854 Score: 109
Period size: 2 Copynumber: 29.5 Consensus size: 2
17962786 CAACAAACAA
17962796 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
*
17962838 GC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC A
17962855 TACCCATAAA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 55 1.00
ACGTcount: A:0.49, C:0.49, G:0.02, T:0.00
Consensus pattern (2 bp):
AC
Found at i:17962996 original size:79 final size:79
Alignment explanation
Indices: 17962860--17963125 Score: 272
Period size: 77 Copynumber: 3.4 Consensus size: 79
17962850 ACACATACCC
* * *
17962860 ATAAAAAATAGTCACTGCATGCAAATTAAAAAATAGTCAATAGCATGTGACCATCCCCACCAGCA
1 ATAAAAAA-AGTCACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACCATCCCCACCAACA
*
17962925 ATCATACACACACAT
65 ATCATACACACACAA
* * * * *
17962940 CTAAAAAACAGTCACTGCATGCATATT-AAAAATAGTCAACAACATATGACCATCCCCATCAATA
1 ATAAAAAA-AGTCACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACCATCCCCACCAACA
*
17963004 ATCATACACAGACAA
65 ATCATACACACACAA
* * * * * * *
17963019 ATTAAAAAA--CACTGTATGTATATTGAAAAACAGTCAACAGCATGTGACCAACCCTACCAACAA
1 ATAAAAAAAGTCACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACCATCCCCACCAACAA
* * *
17963082 TCATACACAAATAG
66 TCATACACACACAA
* * *
17963096 ATTAGAAAA-T-ATTGCATGCATATTAAAAAA
1 ATAAAAAAAGTCACTGCATGCATATTAAAAAA
17963126 CCCTCACTAA
Statistics
Matches: 154, Mismatches: 30, Indels: 7
0.81 0.16 0.04
Matches are distributed among these distances:
76 13 0.08
77 66 0.43
78 1 0.01
79 50 0.32
80 24 0.16
ACGTcount: A:0.47, C:0.22, G:0.09, T:0.21
Consensus pattern (79 bp):
ATAAAAAAAGTCACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACCATCCCCACCAACAA
TCATACACACACAA
Found at i:17963025 original size:80 final size:80
Alignment explanation
Indices: 17962861--17963091 Score: 267
Period size: 79 Copynumber: 2.9 Consensus size: 80
17962851 CACATACCCA
* * *
17962861 TAAAAAATAGTCACTGCATGCAAATTAAAAAATAGTCAATAGCATGTGACCATCCCCACCAGCAA
1 TAAAAAA-AGTCACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACCATCCCCACCAACAA
*
17962926 TCATACAC-ACACATC
65 TCATACACAACAAATC
* * * *
17962941 TAAAAAACAGTCACTGCATGCATATT-AAAAATAGTCAACAACATATGACCATCCCCATCAATAA
1 TAAAAAA-AGTCACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACCATCCCCACCAACAA
17963005 TCATACACAGACAAAT-
65 TCATACACA-ACAAATC
* * * * * *
17963021 T-AAAAAA--CACTGTATGTATATTGAAAAACAGTCAACAGCATGTGACCAACCCTACCAACAAT
1 TAAAAAAAGTCACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACCATCCCCACCAACAAT
17963083 CATACACAA
66 CATACACAA
17963092 ATAGATTAGA
Statistics
Matches: 130, Mismatches: 18, Indels: 10
0.82 0.11 0.06
Matches are distributed among these distances:
76 14 0.11
77 40 0.31
78 1 0.01
79 45 0.35
80 25 0.19
81 5 0.04
ACGTcount: A:0.46, C:0.25, G:0.09, T:0.20
Consensus pattern (80 bp):
TAAAAAAAGTCACTGCATGCATATTAAAAAATAGTCAACAGCATGTGACCATCCCCACCAACAAT
CATACACAACAAATC
Found at i:17965349 original size:6 final size:6
Alignment explanation
Indices: 17965333--17965385 Score: 88
Period size: 6 Copynumber: 8.7 Consensus size: 6
17965323 AAATAACCCT
*
17965333 AAATCCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATTA AAATCA
1 AAAT-CA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA
17965382 AAAT
1 AAAT
17965386 TGAAATCGAA
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
6 40 0.91
7 4 0.09
ACGTcount: A:0.66, C:0.15, G:0.00, T:0.19
Consensus pattern (6 bp):
AAATCA
Found at i:17965421 original size:16 final size:17
Alignment explanation
Indices: 17965401--17965439 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
17965391 TCGAACTAAC
*
17965401 CCAAAATAACCTTAAAT
1 CCAAAATAACCCTAAAT
17965418 -CAAAATAACCCTAAAT
1 CCAAAATAACCCTAAAT
17965434 CCAAAA
1 CCAAAA
17965440 AAAGAAAACT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 15 0.75
17 5 0.25
ACGTcount: A:0.56, C:0.26, G:0.00, T:0.18
Consensus pattern (17 bp):
CCAAAATAACCCTAAAT
Found at i:17981034 original size:13 final size:13
Alignment explanation
Indices: 17981002--17981043 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
17980992 TTGTTTTTGG
17981002 AAAGTGC-TGTGA
1 AAAGTGCTTGTGA
*
17981014 AGATGTGCTTGTGA
1 A-AAGTGCTTGTGA
*
17981028 AAAGTGCTTTTGA
1 AAAGTGCTTGTGA
17981041 AAA
1 AAA
17981044 ACTTGGTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
12 1 0.04
13 18 0.72
14 6 0.24
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.31
Consensus pattern (13 bp):
AAAGTGCTTGTGA
Found at i:17988471 original size:204 final size:204
Alignment explanation
Indices: 17988121--17988522 Score: 795
Period size: 204 Copynumber: 2.0 Consensus size: 204
17988111 AGAACTTCTA
17988121 AGGAAATTGAATGGAGCTCTTCAGTCCTGAAGTAGATCCTGCTTCCGAGCTAATTTCTACGATTT
1 AGGAAATTGAATGGAGCTCTTCAGTCCTGAAGTAGATCCTGCTTCCGAGCTAATTTCTACGATTT
17988186 CTCTACGATTTCTACGAGCTGTACTTTCAATTTTGCTATCAAAAAGTAGAGGACCTGACGGGTTT
66 CTCTACGATTTCTACGAGCTGTACTTTCAATTTTGCTATCAAAAAGTAGAGGACCTGACGGGTTT
17988251 CTTCTAGTCATAAACTATAAAAACCTGCCAAAAGCAAATAAAATAAAAGTTAGTAATTAAAATAA
131 CTTCTAGTCATAAACTATAAAAACCTGCCAAAAGCAAATAAAATAAAAGTTAGTAATTAAAATAA
17988316 AAACAAAAC
196 AAACAAAAC
17988325 AGGAAATTGAATGGAGCTCTTCAGTCCTGAAGTAGATCCTGCTTCCGAGCTAATTTCTACGATTT
1 AGGAAATTGAATGGAGCTCTTCAGTCCTGAAGTAGATCCTGCTTCCGAGCTAATTTCTACGATTT
*
17988390 CTCTACGATTTCTACGAGCTGTACTTTCAATTTTGCTGTCAAAAAGTAGAGGACCTGACGGGTTT
66 CTCTACGATTTCTACGAGCTGTACTTTCAATTTTGCTATCAAAAAGTAGAGGACCTGACGGGTTT
17988455 CTTCTAGTCATAAACTATAAAAACCTGCCAAAAGCAAATAAAATAAAAGTTAGTAATTAAAATAA
131 CTTCTAGTCATAAACTATAAAAACCTGCCAAAAGCAAATAAAATAAAAGTTAGTAATTAAAATAA
17988520 AAA
196 AAA
17988523 TAGCTAAAGT
Statistics
Matches: 197, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
204 197 1.00
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (204 bp):
AGGAAATTGAATGGAGCTCTTCAGTCCTGAAGTAGATCCTGCTTCCGAGCTAATTTCTACGATTT
CTCTACGATTTCTACGAGCTGTACTTTCAATTTTGCTATCAAAAAGTAGAGGACCTGACGGGTTT
CTTCTAGTCATAAACTATAAAAACCTGCCAAAAGCAAATAAAATAAAAGTTAGTAATTAAAATAA
AAACAAAAC
Found at i:17989178 original size:138 final size:137
Alignment explanation
Indices: 17988952--17989225 Score: 487
Period size: 138 Copynumber: 2.0 Consensus size: 137
17988942 CGAGACTAAA
17988952 ACAACTGACTCTAAGTTGATTAACTGAAATCTCTTTCTAATTAAAACCCTATTGTCGCATTAACT
1 ACAACTGACTCTAAGTTGATTAACTGAAATCTCTTTCTAATTAAAACCCTATTGTCGCATTAACT
17989017 CGATCTATGAATTCCTTTATTAGATTTGACTCTAATCCGGCAGATTTATGTCGTCCTATCGCTAA
66 CGATCTATGAATTCCTTTATTAGATTTGACTCTAATCCGGCAGATTTATGTCGTCCTATCGCTAA
17989082 GATTGCG
131 GATTGCG
*
17989089 ACAACTGACTCTAGGTTGATTAACTGAAATCTCTTTCTAATTAAAACCTCTATTGTCGCATTAAC
1 ACAACTGACTCTAAGTTGATTAACTGAAATCTCTTTCTAATTAAAACC-CTATTGTCGCATTAAC
* * *
17989154 TCGATCTAT-AGATTCCTTTATTAGATTTGACTCTATTCTGGCAGATTTATGTCGTCCTATCTCT
65 TCGATCTATGA-ATTCCTTTATTAGATTTGACTCTAATCCGGCAGATTTATGTCGTCCTATCGCT
17989218 AAGATTGC
129 AAGATTGC
17989226 ATGTAACTCC
Statistics
Matches: 131, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
137 48 0.37
138 83 0.63
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.38
Consensus pattern (137 bp):
ACAACTGACTCTAAGTTGATTAACTGAAATCTCTTTCTAATTAAAACCCTATTGTCGCATTAACT
CGATCTATGAATTCCTTTATTAGATTTGACTCTAATCCGGCAGATTTATGTCGTCCTATCGCTAA
GATTGCG
Found at i:17997319 original size:54 final size:55
Alignment explanation
Indices: 17997261--17997373 Score: 210
Period size: 55 Copynumber: 2.1 Consensus size: 55
17997251 TTTTTCTGTT
*
17997261 AAAAAA-TAGAGGTCCTGATGGGTTTCTTCTAGTCATAAACTATAAAAACCTGCC
1 AAAAAAGTAGAGGTCCTGATGCGTTTCTTCTAGTCATAAACTATAAAAACCTGCC
17997315 AAAAAAGTAGAGGTCCTGATGCGTTTCTTCTAGTCATAAACTATAAAAACCTGCC
1 AAAAAAGTAGAGGTCCTGATGCGTTTCTTCTAGTCATAAACTATAAAAACCTGCC
17997370 AAAA
1 AAAA
17997374 GCAAATAAAA
Statistics
Matches: 57, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
54 6 0.11
55 51 0.89
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.27
Consensus pattern (55 bp):
AAAAAAGTAGAGGTCCTGATGCGTTTCTTCTAGTCATAAACTATAAAAACCTGCC
Found at i:17998850 original size:18 final size:18
Alignment explanation
Indices: 17998805--17998863 Score: 55
Period size: 18 Copynumber: 3.3 Consensus size: 18
17998795 GGTTTGTCAG
* * *
17998805 CAGTTGCAGTCTGTTATC
1 CAGTAGCAGTCAGTTATT
* *
17998823 CAATAACAGTCAGTTATT
1 CAGTAGCAGTCAGTTATT
* *
17998841 CAGTAGCAGTTAATTATT
1 CAGTAGCAGTCAGTTATT
17998859 CAGTA
1 CAGTA
17998864 CCTTTATTTA
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.36
Consensus pattern (18 bp):
CAGTAGCAGTCAGTTATT
Found at i:18006397 original size:32 final size:34
Alignment explanation
Indices: 18006356--18006427 Score: 112
Period size: 32 Copynumber: 2.2 Consensus size: 34
18006346 GGTCCAATAT
*
18006356 TGTTTTTAGCTTTTGAATTGAGATTCCATC-A-C
1 TGTTTTTAGCTTCTGAATTGAGATTCCATCAATC
*
18006388 TGTTTTTAGCTTCTGAATTGAGTTTCCATCAATC
1 TGTTTTTAGCTTCTGAATTGAGATTCCATCAATC
18006422 TGTTTT
1 TGTTTT
18006428 ATAATAATGT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
32 28 0.78
33 1 0.03
34 7 0.19
ACGTcount: A:0.19, C:0.15, G:0.15, T:0.50
Consensus pattern (34 bp):
TGTTTTTAGCTTCTGAATTGAGATTCCATCAATC
Found at i:18007719 original size:22 final size:23
Alignment explanation
Indices: 18007693--18007737 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
18007683 GACTTCCTAA
18007693 CCAAGTT-ATGACTCGATTGAGG
1 CCAAGTTGATGACTCGATTGAGG
*
18007715 CCAAGTTGATGACTCGGTTGAGG
1 CCAAGTTGATGACTCGATTGAGG
18007738 GTGACAATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 7 0.33
23 14 0.67
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (23 bp):
CCAAGTTGATGACTCGATTGAGG
Found at i:18011116 original size:3 final size:3
Alignment explanation
Indices: 18011104--18011142 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
18011094 TGCACACCAC
18011104 AGA A-A AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
18011143 TGCTTTGTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.06
3 33 0.94
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:18014274 original size:17 final size:16
Alignment explanation
Indices: 18014254--18014287 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
18014244 TTTAGAAGAA
18014254 AGGTGTGTTTATATATT
1 AGGTGTGTTTATA-ATT
*
18014271 AGGTGTTTTTATAATT
1 AGGTGTGTTTATAATT
18014287 A
1 A
18014288 TAGCAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.26, C:0.00, G:0.21, T:0.53
Consensus pattern (16 bp):
AGGTGTGTTTATAATT
Found at i:18025607 original size:47 final size:47
Alignment explanation
Indices: 18025548--18026700 Score: 2036
Period size: 47 Copynumber: 24.4 Consensus size: 47
18025538 GATGTACAAG
* * * * *
18025548 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
* * *
18025595 GTGTATATATGTGATATGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
* * *
18025642 GTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
18025689 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
18025736 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
18025783 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
18025830 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
18025877 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
18025924 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
18025971 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
18026018 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
18026065 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
18026112 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
18026159 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
18026206 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
18026253 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
18026300 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
18026347 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
18026394 GTGTATATATGTGATAAGGCCGAGTGGCCAACGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAGT-------GGCCAACGTGATGAATGTGAAA
18026448 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
18026495 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
18026542 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
* * * * * * * *
18026589 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
* * *
18026636 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
*
18026683 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
18026701 TCCCGAAGGG
Statistics
Matches: 1076, Mismatches: 23, Indels: 14
0.97 0.02 0.01
Matches are distributed among these distances:
47 1029 0.96
54 47 0.04
ACGTcount: A:0.32, C:0.10, G:0.32, T:0.26
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
Done.