Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 58 of 276
Found at i:18030832 original size:40 final size:40
Alignment explanation
Indices: 18030778--18030864 Score: 167
Period size: 40 Copynumber: 2.2 Consensus size: 40
18030768 TATATGTATA
18030778 TAATTT-TTACACATGTCCTTACCAACACCAAACACCTGT
1 TAATTTATTACACATGTCCTTACCAACACCAAACACCTGT
18030817 TAATTTATTACACATGTCCTTACCAACACCAAACACCTGT
1 TAATTTATTACACATGTCCTTACCAACACCAAACACCTGT
18030857 TAATTTAT
1 TAATTTAT
18030865 GGTTTAATTG
Statistics
Matches: 47, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
39 6 0.13
40 41 0.87
ACGTcount: A:0.34, C:0.28, G:0.05, T:0.33
Consensus pattern (40 bp):
TAATTTATTACACATGTCCTTACCAACACCAAACACCTGT
Found at i:18031122 original size:25 final size:25
Alignment explanation
Indices: 18031088--18031141 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
18031078 CAATTACTCA
18031088 TGACTATCGAGTCGTTACAGTGTTG
1 TGACTATCGAGTCGTTACAGTGTTG
18031113 TGACTATCGAGTCGTTACAGTGTTG
1 TGACTATCGAGTCGTTACAGTGTTG
18031138 TGAC
1 TGAC
18031142 GACCCAATAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.20, C:0.17, G:0.28, T:0.35
Consensus pattern (25 bp):
TGACTATCGAGTCGTTACAGTGTTG
Found at i:18031154 original size:25 final size:25
Alignment explanation
Indices: 18031101--18031154 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
18031091 CTATCGAGTC
* * * * *
18031101 GTTACAGTGTTGTGACTATCGAGTC
1 GTTACAGTGTTGTGACGACCCAATA
18031126 GTTACAGTGTTGTGACGACCCAATA
1 GTTACAGTGTTGTGACGACCCAATA
18031151 GTTA
1 GTTA
18031155 GGGTGTCGAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (25 bp):
GTTACAGTGTTGTGACGACCCAATA
Found at i:18040000 original size:23 final size:26
Alignment explanation
Indices: 18039952--18040000 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
18039942 TTTATACACA
*
18039952 AATTAGTACGAGATACATTTGAATAT
1 AATTAGTACGAAATACATTTGAATAT
18039978 AATTA-TACGAAAT-CATTT-AATAT
1 AATTAGTACGAAATACATTTGAATAT
18040001 CAAGTCACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 5 0.23
24 5 0.23
25 7 0.32
26 5 0.23
ACGTcount: A:0.45, C:0.08, G:0.10, T:0.37
Consensus pattern (26 bp):
AATTAGTACGAAATACATTTGAATAT
Found at i:18046562 original size:51 final size:51
Alignment explanation
Indices: 18046486--18046605 Score: 186
Period size: 51 Copynumber: 2.4 Consensus size: 51
18046476 AACTAAGTTA
* *
18046486 TCCGGATAAAATATGAAGCTCTTGTTAAAGCTAGAGCAACAAAGTAATTAT
1 TCCGGATGAAATATGAAGCTCTTGTTAAAGCTAGAGCAACAAAGTAATAAT
* * *
18046537 TCCGGATGAAATATGAAGCTCTTGTTGAAGTTAGAGCAACAAGGTAATAAT
1 TCCGGATGAAATATGAAGCTCTTGTTAAAGCTAGAGCAACAAAGTAATAAT
*
18046588 TCCGGATGAAGTATGAAG
1 TCCGGATGAAATATGAAG
18046606 TAAGTTTGAG
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 63 1.00
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.27
Consensus pattern (51 bp):
TCCGGATGAAATATGAAGCTCTTGTTAAAGCTAGAGCAACAAAGTAATAAT
Found at i:18047686 original size:42 final size:42
Alignment explanation
Indices: 18047574--18047711 Score: 134
Period size: 42 Copynumber: 3.3 Consensus size: 42
18047564 TATCGTACCA
* * * **
18047574 ATGCCATATCCTAGATATGGTCTTACATGTAA-TCTCGTATCG
1 ATGCCATATCCCAAATATGGTCTTACACG-AAGTCTTATATCG
* * * *
18047616 ATGCGAATAGCTCAACTATGGTCTTACACGAAGTCTTATATCG
1 ATGC-CATATCCCAAATATGGTCTTACACGAAGTCTTATATCG
* * *
18047659 ATGCCATATCCCAAATATGGTCTTACACGTAGTCTTATCTTG
1 ATGCCATATCCCAAATATGGTCTTACACGAAGTCTTATATCG
*
18047701 ATGTCATATCC
1 ATGCCATATCC
18047712 TAGTTATTGT
Statistics
Matches: 77, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
42 47 0.61
43 30 0.39
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (42 bp):
ATGCCATATCCCAAATATGGTCTTACACGAAGTCTTATATCG
Found at i:18048456 original size:46 final size:47
Alignment explanation
Indices: 18048392--18048540 Score: 180
Period size: 46 Copynumber: 3.2 Consensus size: 47
18048382 TTATCTTTGA
* * *
18048392 CATGATGCCATAGG-ATCTTTAAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCAT-GGTATCTTTCAACTATGGTCTTATTCATTTTCATGT
**
18048438 CATGTTGCCATGGTATCTTTCAACCCTGGTCTTATTC-TTTTCATGT
1 CATGTTGCCATGGTATCTTTCAACTATGGTCTTATTCATTTTCATGT
* *
18048484 CACGTTTCCATGGTATCTTTCAACTATGGTCTTATTCA-TTTCATGT
1 CATGTTGCCATGGTATCTTTCAACTATGGTCTTATTCATTTTCATGT
* *
18048530 CACGCTGCCAT
1 CATGTTGCCAT
18048541 TATTCATTTC
Statistics
Matches: 89, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
45 7 0.08
46 82 0.92
ACGTcount: A:0.19, C:0.23, G:0.15, T:0.42
Consensus pattern (47 bp):
CATGTTGCCATGGTATCTTTCAACTATGGTCTTATTCATTTTCATGT
Found at i:18048576 original size:25 final size:25
Alignment explanation
Indices: 18048515--18048565 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
18048505 AACTATGGTC
*
18048515 TTATTCATTTCATGTCACGCTGCCA
1 TTATTCATTTCATGTCACGCAGCCA
18048540 TTATTCATTTCATGTCACGCAGCCA
1 TTATTCATTTCATGTCACGCAGCCA
18048565 T
1 T
18048566 GGTATCTTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.22, C:0.27, G:0.12, T:0.39
Consensus pattern (25 bp):
TTATTCATTTCATGTCACGCAGCCA
Found at i:18048591 original size:46 final size:46
Alignment explanation
Indices: 18048540--18049334 Score: 1131
Period size: 46 Copynumber: 17.3 Consensus size: 46
18048530 CACGCTGCCA
**
18048540 TTATTCATTTCATGTCACGCAGCCATGGTATCTTTCAACCATGGTC
1 TTATTCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTC
* ** * *
18048586 CTATTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACCATGGTC
1 TTATTCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTC
*
18048632 TTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTC
1 TTATTCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTC
** * *
18048678 TTATTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACCATGGTC
1 TTATTCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTC
*
18048724 TTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTC
1 TTATTCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTC
* ** * *
18048770 CTATTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACCATGGTC
1 TTATTCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTC
*
18048816 TTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTC
1 TTATTCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTC
* ** * *
18048862 CTATTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACCATGGTC
1 TTATTCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTC
*
18048908 TTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTC
1 TTATTCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTC
* ** * *
18048954 CTATTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACCATGGTC
1 TTATTCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTC
*
18049000 TTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTC
1 TTATTCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTC
* ** * *
18049046 CTATTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACCATGGTC
1 TTATTCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTC
*
18049092 TTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTC
1 TTATTCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTC
* ** * *
18049138 CTATTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACCATGGTC
1 TTATTCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTC
*
18049184 TTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTC
1 TTATTCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTC
* ** * *
18049230 CTATTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACCATGGTC
1 TTATTCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTC
*
18049276 TTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTC
1 TTATTCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTC
**
18049322 TTACACATTTCAT
1 TTATTCATTTCAT
18049335 TTAAGAGAGC
Statistics
Matches: 651, Mismatches: 98, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 651 1.00
ACGTcount: A:0.18, C:0.27, G:0.15, T:0.40
Consensus pattern (46 bp):
TTATTCATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTC
Found at i:18048610 original size:71 final size:71
Alignment explanation
Indices: 18048469--18048611 Score: 196
Period size: 71 Copynumber: 2.0 Consensus size: 71
18048459 AACCCTGGTC
* *** * * *
18048469 TTATTCTTTTCATGTCACGTTTCCATGGTATCTTTCAACTATGGTCTTATTCATTTCATGTCACG
1 TTATTCATTTCATGTCACGCAGCCATGGTATCTTTCAACCATGGTCCTATTCATTTCACGTCACG
18048534 CTGCCA
66 CTGCCA
* *
18048540 TTATTCATTTCATGTCACGCAGCCATGGTATCTTTCAACCATGGTCCTATTCATTTCCCGTCATG
1 TTATTCATTTCATGTCACGCAGCCATGGTATCTTTCAACCATGGTCCTATTCATTTCACGTCACG
*
18048605 TTGCCA
66 CTGCCA
18048611 T
1 T
18048612 GGTATCTCTC
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
71 62 1.00
ACGTcount: A:0.19, C:0.26, G:0.13, T:0.42
Consensus pattern (71 bp):
TTATTCATTTCATGTCACGCAGCCATGGTATCTTTCAACCATGGTCCTATTCATTTCACGTCACG
CTGCCA
Found at i:18048668 original size:117 final size:117
Alignment explanation
Indices: 18048444--18048657 Score: 329
Period size: 117 Copynumber: 1.8 Consensus size: 117
18048434 CTGTCATGTT
* * * * * * *
18048444 GCCATGGTATCTTTCAACCCTGGTCTTATTCTTTTCATGTCACGTTTCCATGGTATCTTTCAACT
1 GCCATGGTATCTTTCAACCATGGTCCTATTCATTTCACGTCACGTTGCCATGGTATCTCTCAACC
18048509 ATGGTCTTATTCATTTCATGTCACGCTGCCATTATTCATTTCATGTCACGCA
66 ATGGTCTTATTCATTTCATGTCACGCTGCCATTATTCATTTCATGTCACGCA
* *
18048561 GCCATGGTATCTTTCAACCATGGTCCTATTCATTTCCCGTCATGTTGCCATGGTATCTCTCAACC
1 GCCATGGTATCTTTCAACCATGGTCCTATTCATTTCACGTCACGTTGCCATGGTATCTCTCAACC
* *
18048626 ATGGTCTTATTCTTTTCATGTCACGTTGCCAT
66 ATGGTCTTATTCATTTCATGTCACGCTGCCAT
18048658 GGTATCTTTC
Statistics
Matches: 86, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
117 86 1.00
ACGTcount: A:0.18, C:0.27, G:0.14, T:0.41
Consensus pattern (117 bp):
GCCATGGTATCTTTCAACCATGGTCCTATTCATTTCACGTCACGTTGCCATGGTATCTCTCAACC
ATGGTCTTATTCATTTCATGTCACGCTGCCATTATTCATTTCATGTCACGCA
Found at i:18049332 original size:92 final size:92
Alignment explanation
Indices: 18048540--18049321 Score: 1528
Period size: 92 Copynumber: 8.5 Consensus size: 92
18048530 CACGCTGCCA
* **
18048540 TTATTCATTTCATGTCACGCAGCCATGGTATCTTTCAACCATGGTCCTATTCATTTCCCGTCATG
1 TTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCCTATTCATTTCCCGTCATG
18048605 TTGCCATGGTATCTCTCAACCATGGTC
66 TTGCCATGGTATCTCTCAACCATGGTC
*
18048632 TTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATG
1 TTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCCTATTCATTTCCCGTCATG
18048697 TTGCCATGGTATCTCTCAACCATGGTC
66 TTGCCATGGTATCTCTCAACCATGGTC
18048724 TTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCCTATTCATTTCCCGTCATG
1 TTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCCTATTCATTTCCCGTCATG
18048789 TTGCCATGGTATCTCTCAACCATGGTC
66 TTGCCATGGTATCTCTCAACCATGGTC
18048816 TTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCCTATTCATTTCCCGTCATG
1 TTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCCTATTCATTTCCCGTCATG
18048881 TTGCCATGGTATCTCTCAACCATGGTC
66 TTGCCATGGTATCTCTCAACCATGGTC
18048908 TTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCCTATTCATTTCCCGTCATG
1 TTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCCTATTCATTTCCCGTCATG
18048973 TTGCCATGGTATCTCTCAACCATGGTC
66 TTGCCATGGTATCTCTCAACCATGGTC
18049000 TTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCCTATTCATTTCCCGTCATG
1 TTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCCTATTCATTTCCCGTCATG
18049065 TTGCCATGGTATCTCTCAACCATGGTC
66 TTGCCATGGTATCTCTCAACCATGGTC
18049092 TTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCCTATTCATTTCCCGTCATG
1 TTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCCTATTCATTTCCCGTCATG
18049157 TTGCCATGGTATCTCTCAACCATGGTC
66 TTGCCATGGTATCTCTCAACCATGGTC
18049184 TTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCCTATTCATTTCCCGTCATG
1 TTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCCTATTCATTTCCCGTCATG
18049249 TTGCCATGGTATCTCTCAACCATGGTC
66 TTGCCATGGTATCTCTCAACCATGGTC
18049276 TTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTC
1 TTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTC
18049322 TTACACATTT
Statistics
Matches: 685, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
92 685 1.00
ACGTcount: A:0.18, C:0.27, G:0.15, T:0.40
Consensus pattern (92 bp):
TTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCCTATTCATTTCCCGTCATG
TTGCCATGGTATCTCTCAACCATGGTC
Found at i:18051188 original size:11 final size:11
Alignment explanation
Indices: 18051172--18051231 Score: 84
Period size: 11 Copynumber: 5.3 Consensus size: 11
18051162 CTTTCTTGAT
18051172 ATACTAATAAA
1 ATACTAATAAA
18051183 ATACTAATAAA
1 ATACTAATAAA
18051194 ATACTAATAAA
1 ATACTAATAAA
*
18051205 ATATCTTATTAAA
1 ATA-C-TAATAAA
*
18051218 ATATTAATAAA
1 ATACTAATAAA
18051229 ATA
1 ATA
18051232 ATATTTATCT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
11 34 0.77
12 1 0.02
13 9 0.20
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (11 bp):
ATACTAATAAA
Found at i:18051225 original size:24 final size:22
Alignment explanation
Indices: 18051172--18051231 Score: 84
Period size: 24 Copynumber: 2.6 Consensus size: 22
18051162 CTTTCTTGAT
18051172 ATACTAATAAAATACTAATAAA
1 ATACTAATAAAATACTAATAAA
*
18051194 ATACTAATAAAATATCTTATTAAA
1 ATACTAATAAAATA-C-TAATAAA
*
18051218 ATATTAATAAAATA
1 ATACTAATAAAATA
18051232 ATATTTATCT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
22 14 0.41
23 1 0.03
24 19 0.56
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (22 bp):
ATACTAATAAAATACTAATAAA
Found at i:18052795 original size:11 final size:11
Alignment explanation
Indices: 18052779--18052807 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
18052769 AAATTTTTGA
18052779 ACGAAATTTTC
1 ACGAAATTTTC
18052790 ACGAAATTTTC
1 ACGAAATTTTC
18052801 ACGAAAT
1 ACGAAAT
18052808 CATTCCATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.41, C:0.17, G:0.10, T:0.31
Consensus pattern (11 bp):
ACGAAATTTTC
Found at i:18056125 original size:24 final size:24
Alignment explanation
Indices: 18056094--18056149 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
18056084 CCATATAATG
18056094 GGAAGCTCATAAGAGCC-ATAATCA
1 GGAAGCTCATAAGAGCCAATAA-CA
**
18056118 GGAAGCTCATGTGAGCCAATAACA
1 GGAAGCTCATAAGAGCCAATAACA
*
18056142 GGTAGCTC
1 GGAAGCTC
18056150 CGAAAAGCCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 24 0.86
25 4 0.14
ACGTcount: A:0.36, C:0.21, G:0.25, T:0.18
Consensus pattern (24 bp):
GGAAGCTCATAAGAGCCAATAACA
Found at i:18061344 original size:339 final size:339
Alignment explanation
Indices: 18060719--18061399 Score: 1263
Period size: 339 Copynumber: 2.0 Consensus size: 339
18060709 AGGCTTACTT
* *
18060719 ATTCGCTTATCATATTCTTTTCTTAAATAATAGAATAACCTAATATAAAACCTTTAATCACTTCT
1 ATTCACTTATCATATTCTTTTCTTAAATAATAGAATAACCTAATATAAAACCTTTAATCACGTCT
*
18060784 ACAACAGATACTTTACGCCAAACTCTAATCCACCAGAAGTGTAACCCATTAAACCTGGCCTAAAC
66 ACAACAAATACTTTACGCCAAACTCTAATCCACCAGAAGTGTAACCCATTAAACCTGGCCTAAAC
* *
18060849 GTTATGGCCGAATCTTGAAGATTACATTTTCCATATTGATGGCACAAAAAAAATCATTTAGCTAT
131 GTTATGGCCGAATCTCGAAGATCACATTTTCCATATTGATGGCACAAAAAAAATCATTTAGCTAT
*
18060914 TTTCTCTTAAAAATCGTCATTGCTTAAACCATCTTTGTTGAGAAAACTGAATTTTGTTTGAAATT
196 TTTCTCTTAAAAATCGTCATTGCTTAAACCATCTTTGTTGAGAAAACCGAATTTTGTTTGAAATT
18060979 GTTTATCTTTAGAAAACTCAAGTTTTGATATTTTTCCTTCAGAAAGTGTCATACTTCAATTAAAA
261 GTTTATCTTTAGAAAACTCAAGTTTTGATATTTTTCCTTCAGAAAGTGTCATACTTCAATTAAAA
18061044 CATTGCAATGGATA
326 CATTGCAATGGATA
18061058 ATTCACTTATCATATTCTTTTCTTAAATAATAGAATAACCTAATATAAAACCTTTAATCACGTCT
1 ATTCACTTATCATATTCTTTTCTTAAATAATAGAATAACCTAATATAAAACCTTTAATCACGTCT
* * *
18061123 ACAACAAATACTTTATGCCAAACTTTAATCCGCCAGAAGTGTAACCCATTAAACCTGGCCTAAAC
66 ACAACAAATACTTTACGCCAAACTCTAATCCACCAGAAGTGTAACCCATTAAACCTGGCCTAAAC
*
18061188 GTTATGGCCGAATCTCGAAGATCACATTTTCCATATTGATGGCGCAAAAAAAATCATTTAGCTAT
131 GTTATGGCCGAATCTCGAAGATCACATTTTCCATATTGATGGCACAAAAAAAATCATTTAGCTAT
18061253 TTTCTCTTAAAAATCGTCATTGCTTAAACCATCTTTGTTGAGAAAACCGAATTTTGTTTGAAATT
196 TTTCTCTTAAAAATCGTCATTGCTTAAACCATCTTTGTTGAGAAAACCGAATTTTGTTTGAAATT
*
18061318 GTTTATCTTTAGAAAACTCAAGTTTTGATATTTTTTCTTCAGAAAGTGTCATACTTCAATTAAAA
261 GTTTATCTTTAGAAAACTCAAGTTTTGATATTTTTCCTTCAGAAAGTGTCATACTTCAATTAAAA
18061383 CATTGCAATGGATA
326 CATTGCAATGGATA
18061397 ATT
1 ATT
18061400 TTCATATCTA
Statistics
Matches: 331, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
339 331 1.00
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.36
Consensus pattern (339 bp):
ATTCACTTATCATATTCTTTTCTTAAATAATAGAATAACCTAATATAAAACCTTTAATCACGTCT
ACAACAAATACTTTACGCCAAACTCTAATCCACCAGAAGTGTAACCCATTAAACCTGGCCTAAAC
GTTATGGCCGAATCTCGAAGATCACATTTTCCATATTGATGGCACAAAAAAAATCATTTAGCTAT
TTTCTCTTAAAAATCGTCATTGCTTAAACCATCTTTGTTGAGAAAACCGAATTTTGTTTGAAATT
GTTTATCTTTAGAAAACTCAAGTTTTGATATTTTTCCTTCAGAAAGTGTCATACTTCAATTAAAA
CATTGCAATGGATA
Found at i:18061637 original size:16 final size:17
Alignment explanation
Indices: 18061618--18061655 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
18061608 CTAAATCATG
*
18061618 CAAAAAAATCCAAAAT-
1 CAAAAAAATACAAAATC
*
18061634 CAAAATAATACAAAATC
1 CAAAAAAATACAAAATC
18061651 CAAAA
1 CAAAA
18061656 GAAAATCCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.68, C:0.18, G:0.00, T:0.13
Consensus pattern (17 bp):
CAAAAAAATACAAAATC
Found at i:18061886 original size:14 final size:15
Alignment explanation
Indices: 18061867--18061895 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
18061857 TACATATTAA
18061867 CATATCAATC-TCAT
1 CATATCAATCATCAT
18061881 CATATCAATCATCAT
1 CATATCAATCATCAT
18061896 AATAATCACA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.38, C:0.28, G:0.00, T:0.34
Consensus pattern (15 bp):
CATATCAATCATCAT
Found at i:18066280 original size:48 final size:48
Alignment explanation
Indices: 18066219--18066314 Score: 174
Period size: 48 Copynumber: 2.0 Consensus size: 48
18066209 AATATTTTAT
18066219 TAAGCAAACCTATGAACAGTTTTCTTTTTCTTCCCGTATAAAAATTGC
1 TAAGCAAACCTATGAACAGTTTTCTTTTTCTTCCCGTATAAAAATTGC
* *
18066267 TAAGCAAACCTATGAACATTTTTCTTTTTCTTCCCGTGTAAAAATTGC
1 TAAGCAAACCTATGAACAGTTTTCTTTTTCTTCCCGTATAAAAATTGC
18066315 ACCTTAAAGA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.30, C:0.21, G:0.10, T:0.39
Consensus pattern (48 bp):
TAAGCAAACCTATGAACAGTTTTCTTTTTCTTCCCGTATAAAAATTGC
Found at i:18072213 original size:2 final size:2
Alignment explanation
Indices: 18072206--18072230 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
18072196 TAGCTGCATC
18072206 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
18072231 AAGTTTGGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:18073319 original size:15 final size:15
Alignment explanation
Indices: 18073293--18073330 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
18073283 CCTTTGTTCA
*
18073293 TTTTTCATTTTTT-T
1 TTTTTTATTTTTTAT
18073307 TTATTTTATTTTTTAT
1 TT-TTTTATTTTTTAT
18073323 TTTTTTAT
1 TTTTTTAT
18073331 AAATCTATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 2 0.10
15 16 0.76
16 3 0.14
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTTTATTTTTTAT
Found at i:18074120 original size:7 final size:7
Alignment explanation
Indices: 18074108--18074141 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
18074098 AGTGGAGTAT
18074108 TTTTTTA
1 TTTTTTA
18074115 TTTTTTA
1 TTTTTTA
18074122 TTTTTTA
1 TTTTTTA
18074129 TTTTTTA
1 TTTTTTA
18074136 TTTTTT
1 TTTTTT
18074142 CCTTTCTCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:18077583 original size:48 final size:48
Alignment explanation
Indices: 18077476--18077792 Score: 259
Period size: 48 Copynumber: 6.6 Consensus size: 48
18077466 ATGTGTCCTG
* * * *
18077476 GTGTAAGACCATGTCTGGGACATGGCATCG-CCACGATATAAAAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACAATGATATGAGAGCCA
* * * *
18077523 GTATAAGACCATGTTTGGAACATGGCATCGACAATGTTATGAGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACAATGATATGAGAGCCA
* * ** * * * * *
18077571 GTGTAAGACCATGTCCGGGACATGGCATCGGCGCTGTTAGGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACAATGATATGAGAGCCA
* * *
18077619 GTGTAAGACCATGTCTGGGACATGACAATGGCCACAT--TATGAGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGC-ATCGACA-ATGATATGAGAGCCA
* * * * * *
18077667 ATGTAAAACTATGTCTGGGACATGGCATC-AGCATTGAAATGAGAGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGA-CAATGATATGAGAGCCA
* * * *
18077715 GTGTAAGATCATGTCTGGGACATGGCATC-AGC-CTCGACATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGA-CAAT-GATATGAGAGCCA
* *
18077763 ATGTAAGACCATGTCTGGAACATGGCATCG
1 GTGTAAGACCATGTCTGGGACATGGCATCG
18077793 GTAATTTACC
Statistics
Matches: 213, Mismatches: 49, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
46 1 0.00
47 32 0.15
48 175 0.82
49 4 0.02
50 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGACAATGATATGAGAGCCA
Found at i:18077672 original size:96 final size:97
Alignment explanation
Indices: 18077477--18077793 Score: 295
Period size: 96 Copynumber: 3.3 Consensus size: 97
18077467 TGTGTCCTGG
* * ** * * * *
18077477 TGTAAGACCATGTCTGGGACATGGCATCGCCAC-GATATAAAAGCCAGTATAAGACCATGTTTGG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCACTGAAAGGAGAGCTAGTGTAAGACCATGTCTGG
* * * * *
18077541 AACATGGCATC-GACAATG-TTATGAGAGCCAG
66 GACATGACATCAG-CCACGATTATGAGAGCCAA
* * ** * *
18077572 TGTAAGACCATGTCCGGGACATGGCATCGGCGCTGTTAGGTGTGCTAGTGTAAGACCATGTCTGG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCACTGAAAGGAGAGCTAGTGTAAGACCATGTCTGG
*
18077637 GACATGACAAT-GGCCAC-ATTATGAGAGCCAA
66 GACATGAC-ATCAGCCACGATTATGAGAGCCAA
* * * * * *
18077668 TGTAAAACTATGTCTGGGACATGGCATCAGCATTGAAATGAGAGCTAGTGTAAGATCATGTCTGG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCACTGAAAGGAGAGCTAGTGTAAGACCATGTCTGG
* * * *
18077733 GACATGGCATCAGCCTCGA-CATGTGAGCCAA
66 GACATGACATCAGCCACGATTATGAGAGCCAA
*
18077764 TGTAAGACCATGTCTGGAACATGGCATCGG
1 TGTAAGACCATGTCTGGGACATGGCATCGG
18077794 TAATTTACCC
Statistics
Matches: 178, Mismatches: 38, Indels: 11
0.78 0.17 0.05
Matches are distributed among these distances:
95 32 0.18
96 142 0.80
97 4 0.02
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (97 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCACTGAAAGGAGAGCTAGTGTAAGACCATGTCTGG
GACATGACATCAGCCACGATTATGAGAGCCAA
Found at i:18077735 original size:144 final size:143
Alignment explanation
Indices: 18077476--18077792 Score: 352
Period size: 144 Copynumber: 2.2 Consensus size: 143
18077466 ATGTGTCCTG
* * * *
18077476 GTGTAAGACCATGTCTGGGACATGGCATCGCCACGATATAAAAGCCAGTATAAGACCATGTTTGG
1 GTGTAAGACCATGTCTGGGACATGACATCGCCACGATATAAAAGCCAATATAAAACCATGTCTGG
**
18077541 AACATGGCATCGACAATGTTATGAGAGCCAGTGTAAGACCATGTCCGGGACATGGCATCGGCGCT
66 AACATGGCATCGACAATGAAATGAGAGCCAGTGTAAGACCATGTCCGGGACATGGCATCGGCGCT
18077606 GTTAGGTGTGCTA
131 GTTAGGTGTGCTA
* * * * *
18077619 GTGTAAGACCATGTCTGGGACATGACAATGGCCAC-ATTATGAGAGCCAATGTAAAACTATGTCT
1 GTGTAAGACCATGTCTGGGACATGAC-ATCGCCACGA-TATAAAAGCCAATATAAAACCATGTCT
* * * * * *
18077683 GGGACATGGCATC-AGCATTGAAATGAGAGCTAGTGTAAGATCATGTCTGGGACATGGCATCAGC
64 GGAACATGGCATCGA-CAATGAAATGAGAGCCAGTGTAAGACCATGTCCGGGACATGGCATCGGC
** * * *
18077747 -CTCGACATGTGAGCCA
128 GCT-GTTAGGTGTGCTA
* * *
18077763 ATGTAAGACCATGTCTGGAACATGGCATCG
1 GTGTAAGACCATGTCTGGGACATGACATCG
18077793 GTAATTTACC
Statistics
Matches: 144, Mismatches: 26, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
143 32 0.22
144 112 0.78
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (143 bp):
GTGTAAGACCATGTCTGGGACATGACATCGCCACGATATAAAAGCCAATATAAAACCATGTCTGG
AACATGGCATCGACAATGAAATGAGAGCCAGTGTAAGACCATGTCCGGGACATGGCATCGGCGCT
GTTAGGTGTGCTA
Found at i:18081149 original size:19 final size:20
Alignment explanation
Indices: 18081101--18081158 Score: 66
Period size: 21 Copynumber: 2.9 Consensus size: 20
18081091 AGATTTACAT
18081101 TATAAAA-AAATAAATTATA
1 TATAAAATAAATAAATTATA
*
18081120 TATAATTAATAAA-AAATTTTA
1 TATAA--AATAAATAAATTATA
*
18081141 TATAAAATAATTAAATTA
1 TATAAAATAAATAAATTA
18081159 CTAATTGCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
19 10 0.31
20 5 0.16
21 14 0.44
22 3 0.09
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
TATAAAATAAATAAATTATA
Found at i:18084197 original size:46 final size:47
Alignment explanation
Indices: 18084089--18084212 Score: 151
Period size: 46 Copynumber: 2.6 Consensus size: 47
18084079 CATGTCTTCG
** * *
18084089 ACATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTA
1 ACATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTA
*
18084139 ACATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTA
1 ACATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTA
* *
18084185 ATATGGACTTACATGGCTCATTTCTGTC
1 ACATGGACTTACATGGCTCATTCCTGTC
18084213 CTATCCTATC
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
46 34 0.52
50 32 0.48
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (47 bp):
ACATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTA
Found at i:18088540 original size:46 final size:47
Alignment explanation
Indices: 18088436--18088555 Score: 152
Period size: 46 Copynumber: 2.6 Consensus size: 47
18088426 TGTCTTCGAC
** * *
18088436 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATATATATAAT
* * *
18088484 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
*
18088530 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
18088556 CTGTCCTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 33 0.52
48 30 0.48
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
Found at i:18091731 original size:17 final size:18
Alignment explanation
Indices: 18091699--18091733 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
18091689 AATAGAATTT
18091699 TATCATTATAAATTTTTA
1 TATCATTATAAATTTTTA
*
18091717 TATCTTTAT-AATTTTTA
1 TATCATTATAAATTTTTA
18091734 AAGGATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (18 bp):
TATCATTATAAATTTTTA
Found at i:18092214 original size:14 final size:14
Alignment explanation
Indices: 18092195--18092224 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
18092185 GCTACCATTT
18092195 TACTATTATGTTGC
1 TACTATTATGTTGC
*
18092209 TACTATTTTGTTGC
1 TACTATTATGTTGC
18092223 TA
1 TA
18092225 TTGTTTGGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.13, G:0.13, T:0.53
Consensus pattern (14 bp):
TACTATTATGTTGC
Found at i:18092405 original size:18 final size:18
Alignment explanation
Indices: 18092370--18092409 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 18
18092360 GAAATATTTA
*
18092370 TTTTGATGTTTTTAATAT
1 TTTTGATGTTTATAATAT
18092388 TTTTGATGTATTATATATAT
1 TTTTGATGT-TTATA-ATAT
18092408 TT
1 TT
18092410 AAAAATTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 9 0.47
19 4 0.21
20 6 0.32
ACGTcount: A:0.25, C:0.00, G:0.10, T:0.65
Consensus pattern (18 bp):
TTTTGATGTTTATAATAT
Found at i:18092442 original size:12 final size:11
Alignment explanation
Indices: 18092409--18092442 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
18092399 TATATATATT
*
18092409 TAAAAATTATA
1 TAAAAATAATA
18092420 TAAAAATAATA
1 TAAAAATAATA
18092431 TAAAAATCAATA
1 TAAAAAT-AATA
18092443 CAGATGAGCC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 17 0.81
12 4 0.19
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (11 bp):
TAAAAATAATA
Found at i:18103271 original size:17 final size:18
Alignment explanation
Indices: 18103244--18103284 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
18103234 ATTAAAATTT
18103244 TAAATATTGGTAAAGA-AA
1 TAAA-ATTGGTAAAGATAA
*
18103262 TAAAATTGGTAAATATAA
1 TAAAATTGGTAAAGATAA
18103280 TAAAA
1 TAAAA
18103285 GTGCCATATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.59, C:0.00, G:0.12, T:0.29
Consensus pattern (18 bp):
TAAAATTGGTAAAGATAA
Found at i:18105445 original size:40 final size:40
Alignment explanation
Indices: 18105385--18105513 Score: 138
Period size: 40 Copynumber: 3.3 Consensus size: 40
18105375 AACACACCAG
* * *
18105385 TTTGGCACCCAGTGCCTCATCGGATAATTCGAAGTAATAA
1 TTTGACACCCAATGCCTCATCGGATAAATCGAAGTAATAA
* * *
18105425 TTTGACACCCAATGTCTCATCGGCTAAACCGAAGT-A-AA
1 TTTGACACCCAATGCCTCATCGGATAAATCGAAGTAATAA
* * *
18105463 -TTGACACCGAATGCCTCATCGAATAAATCTGAAGTAGTAA
1 TTTGACACCCAATGCCTCATCGGATAAATC-GAAGTAATAA
*
18105503 ATTGACACCCA
1 TTTGACACCCA
18105514 GTGTTTCATT
Statistics
Matches: 72, Mismatches: 13, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
37 24 0.33
38 7 0.10
39 1 0.01
40 31 0.43
41 9 0.12
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (40 bp):
TTTGACACCCAATGCCTCATCGGATAAATCGAAGTAATAA
Found at i:18105693 original size:19 final size:20
Alignment explanation
Indices: 18105638--18105697 Score: 67
Period size: 19 Copynumber: 3.1 Consensus size: 20
18105628 AATACAACCA
18105638 ATAT-TCAATTCAATTCAA-
1 ATATATCAATTCAATTCAAT
18105656 ATA-ATCAATAT-ATATTCAAT
1 ATATATCAAT-TCA-ATTCAAT
18105676 ATATATCAATTCAA-TCAAT
1 ATATATCAATTCAATTCAAT
18105695 ATA
1 ATA
18105698 AATTTAATAA
Statistics
Matches: 36, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
18 9 0.25
19 15 0.42
20 5 0.14
21 7 0.19
ACGTcount: A:0.48, C:0.13, G:0.00, T:0.38
Consensus pattern (20 bp):
ATATATCAATTCAATTCAAT
Found at i:18105696 original size:15 final size:15
Alignment explanation
Indices: 18105640--18105701 Score: 51
Period size: 15 Copynumber: 4.2 Consensus size: 15
18105630 TACAACCAAT
18105640 ATTCAATTCAAT-TCA
1 ATTCAA-TCAATATCA
*
18105655 AAT-AATCAATAT-A
1 ATTCAATCAATATCA
18105668 TATTCAAT-ATATATCA
1 -ATTCAATCA-ATATCA
*
18105684 ATTCAATCAATATAA
1 ATTCAATCAATATCA
18105699 ATT
1 ATT
18105702 TAATAAATTC
Statistics
Matches: 38, Mismatches: 3, Indels: 12
0.72 0.06 0.23
Matches are distributed among these distances:
13 6 0.16
14 6 0.16
15 24 0.63
16 2 0.05
ACGTcount: A:0.48, C:0.13, G:0.00, T:0.39
Consensus pattern (15 bp):
ATTCAATCAATATCA
Found at i:18111643 original size:59 final size:61
Alignment explanation
Indices: 18111572--18111688 Score: 157
Period size: 62 Copynumber: 1.9 Consensus size: 61
18111562 ATCACTTTAA
* * * *
18111572 TATTAAATTAATATAATATTTA-T-CAAGATAAATGTTAGATTAAATTTAATATTAAATCT
1 TATTAAAATAATAGAATATTTACTACAAGATAAATATTAAATTAAATTTAATATTAAATCT
* *
18111631 TATTAAAATAATAGAATGTTTATCTACAATATAAATATTAAATTAAATTTAATATTAA
1 TATTAAAATAATAGAATATTTA-CTACAAGATAAATATTAAATTAAATTTAATATTAA
18111689 TATAATCACT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
59 19 0.39
61 1 0.02
62 29 0.59
ACGTcount: A:0.50, C:0.03, G:0.04, T:0.43
Consensus pattern (61 bp):
TATTAAAATAATAGAATATTTACTACAAGATAAATATTAAATTAAATTTAATATTAAATCT
Found at i:18111714 original size:20 final size:18
Alignment explanation
Indices: 18111664--18111715 Score: 63
Period size: 20 Copynumber: 2.8 Consensus size: 18
18111654 CTACAATATA
18111664 AATATTAAATTAA-ATTT
1 AATATTAAATTAATATTT
18111681 AATATT-AATATAATCACTTT
1 AATATTAAAT-TAAT-A-TTT
18111701 AATATTAAATTAATA
1 AATATTAAATTAATA
18111716 AAATACTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
16 3 0.10
17 9 0.30
19 2 0.07
20 13 0.43
21 3 0.10
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (18 bp):
AATATTAAATTAATATTT
Found at i:18113642 original size:18 final size:17
Alignment explanation
Indices: 18113615--18113650 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
18113605 CCCTCCCCTC
18113615 TCCCCTCTCTCCTTTCT
1 TCCCCTCTCTCCTTTCT
*
18113632 TCCCTCTCTCTCTTTTCT
1 TCCC-CTCTCTCCTTTCT
18113650 T
1 T
18113651 TTTTTTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (17 bp):
TCCCCTCTCTCCTTTCT
Found at i:18114131 original size:3 final size:3
Alignment explanation
Indices: 18114123--18114160 Score: 67
Period size: 3 Copynumber: 12.3 Consensus size: 3
18114113 TGTATTTCCA
18114123 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT ATAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT T
18114161 GTATATTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 31 0.91
4 3 0.09
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:18116655 original size:15 final size:15
Alignment explanation
Indices: 18116635--18116665 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
18116625 GACCCATACA
18116635 CCCATGATGTTGTTT
1 CCCATGATGTTGTTT
18116650 CCCATGATGTTGTTT
1 CCCATGATGTTGTTT
18116665 C
1 C
18116666 TTAGAAGAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.23, G:0.19, T:0.45
Consensus pattern (15 bp):
CCCATGATGTTGTTT
Found at i:18124925 original size:91 final size:92
Alignment explanation
Indices: 18124818--18124995 Score: 243
Period size: 93 Copynumber: 1.9 Consensus size: 92
18124808 AAGGGTTTCT
*
18124818 ACGTAAAATTTGTGTGTTCTTTATTTTAATTTTAATGAAATGT-A-ATATATATATGTATGTATG
1 ACGTAAAATTTGTGTGTTCTTTATTTT-ATTTTAATGAAATGTCACATATATATATATATGTATG
*
18124881 TATGTAACATAAGTAAAGTATATGGGAA
65 TATATAACATAAGTAAAGTATATGGGAA
* ** * * *
18124909 ACGTAAAATTTGTGTGTTCTTTATTTTATTTTATTTTATTTTCACTATATATATATATGTGTATG
1 ACGTAAAATTTGTGTGTTCTTTATTTTATTTTAATGAAATGTCAC-ATATATATATATATGTATG
*
18124974 TATATAACATATGTAAAGTATA
65 TATATAACATAAGTAAAGTATA
18124996 GGGTAATATT
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
90 10 0.13
91 28 0.37
93 37 0.49
ACGTcount: A:0.35, C:0.04, G:0.13, T:0.47
Consensus pattern (92 bp):
ACGTAAAATTTGTGTGTTCTTTATTTTATTTTAATGAAATGTCACATATATATATATATGTATGT
ATATAACATAAGTAAAGTATATGGGAA
Found at i:18135347 original size:60 final size:60
Alignment explanation
Indices: 18135280--18135399 Score: 197
Period size: 60 Copynumber: 2.0 Consensus size: 60
18135270 TAATTTATAA
* *
18135280 TGTCATCATTTTAGTCTGTAATAA-TTTCGAGTTGACACATGACGTTTTATAATTGATATG
1 TGTCATCATTTTAGTATGTAATAATTTTC-ACTTGACACATGACGTTTTATAATTGATATG
*
18135340 TGTCATCATTTTAGTATGTAATAATTTTCACTTGACACATGATGTTTTATAATTGATATG
1 TGTCATCATTTTAGTATGTAATAATTTTCACTTGACACATGACGTTTTATAATTGATATG
18135400 AACTTTTTTG
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
60 52 0.93
61 4 0.07
ACGTcount: A:0.29, C:0.11, G:0.15, T:0.45
Consensus pattern (60 bp):
TGTCATCATTTTAGTATGTAATAATTTTCACTTGACACATGACGTTTTATAATTGATATG
Found at i:18149474 original size:15 final size:15
Alignment explanation
Indices: 18149454--18149484 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
18149444 GTCGCAGCAT
18149454 GTTTTTCAACTAAAA
1 GTTTTTCAACTAAAA
18149469 GTTTTTCAACTAAAA
1 GTTTTTCAACTAAAA
18149484 G
1 G
18149485 CTGGTTGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.13, G:0.10, T:0.39
Consensus pattern (15 bp):
GTTTTTCAACTAAAA
Found at i:18155177 original size:24 final size:24
Alignment explanation
Indices: 18155145--18155190 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
18155135 ATGAAGTTAG
18155145 TTAAGTGTAAAAAAGATGCTAAAA
1 TTAAGTGTAAAAAAGATGCTAAAA
18155169 TTAAGTGTAAAAAAGATGCTAA
1 TTAAGTGTAAAAAAGATGCTAA
18155191 CTTTTTCTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.52, C:0.04, G:0.17, T:0.26
Consensus pattern (24 bp):
TTAAGTGTAAAAAAGATGCTAAAA
Found at i:18155498 original size:28 final size:28
Alignment explanation
Indices: 18155464--18155525 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
18155454 GTTAAATTAT
*
18155464 TTAAATCTTACTTTTTAAGAATATGGAC
1 TTAAATCTTACTTTTTAAGAATACGGAC
* *
18155492 TTAAATCTTACTTTTTATGAATACGGAG
1 TTAAATCTTACTTTTTAAGAATACGGAC
18155520 TTAAAT
1 TTAAAT
18155526 ACATTATAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.35, C:0.10, G:0.11, T:0.44
Consensus pattern (28 bp):
TTAAATCTTACTTTTTAAGAATACGGAC
Found at i:18156468 original size:19 final size:19
Alignment explanation
Indices: 18156422--18156469 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
18156412 GTGTATATTT
18156422 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
* *
18156440 TAAATCTTATTTGGGTAGA
1 TAAATTTTATTTAGGTAGA
*
18156459 TAAGTTTTATT
1 TAAATTTTATT
18156470 CATATTTTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.33, C:0.02, G:0.17, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:18156531 original size:43 final size:43
Alignment explanation
Indices: 18156478--18156575 Score: 135
Period size: 43 Copynumber: 2.3 Consensus size: 43
18156468 TTCATATTTT
*
18156478 AGAAATATTTT-TATTTTATCTTTTAGTAGTTTACTAGAATAAG
1 AGAACTATTTTCT-TTTTATCTTTTAGTAGTTTACTAGAATAAG
* * *
18156521 GGAACTATTTTCTTTTTATGTTTTAGTAGTTTATTAGAATAAG
1 AGAACTATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAG
*
18156564 ATAACTATTTTC
1 AGAACTATTTTC
18156576 CCAATTAGGA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
43 47 0.98
44 1 0.02
ACGTcount: A:0.32, C:0.06, G:0.12, T:0.50
Consensus pattern (43 bp):
AGAACTATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAG
Found at i:18165871 original size:13 final size:13
Alignment explanation
Indices: 18165853--18165880 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
18165843 AAGTTGCTCA
18165853 AATAATAAATAAG
1 AATAATAAATAAG
18165866 AATAATAAATAAG
1 AATAATAAATAAG
18165879 AA
1 AA
18165881 AGATTTAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.07, T:0.21
Consensus pattern (13 bp):
AATAATAAATAAG
Found at i:18167581 original size:28 final size:28
Alignment explanation
Indices: 18167534--18167589 Score: 64
Period size: 28 Copynumber: 2.0 Consensus size: 28
18167524 CTTTCTTTTA
18167534 TATTAATTTTTTTATTTTAATAAA-ATTT
1 TATTAATTTTTTTATTTTAA-AAATATTT
18167562 TATT-ATTTTATTT-TTATTAAAAATATTT
1 TATTAATTTT-TTTATT-TTAAAAATATTT
18167590 AAATATATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
27 10 0.40
28 15 0.60
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (28 bp):
TATTAATTTTTTTATTTTAAAAATATTT
Found at i:18168045 original size:24 final size:20
Alignment explanation
Indices: 18167995--18168051 Score: 59
Period size: 17 Copynumber: 3.0 Consensus size: 20
18167985 CTACCGGAAG
*
18167995 AGAAAGAAAAGAGAGAAAGG
1 AGAAAGAAAAGAGAGAAAGA
*
18168015 AGAAA-AGAAGA-AG-AAGA
1 AGAAAGAAAAGAGAGAAAGA
*
18168032 AGAAAG-AAAGAAAGAAAGA
1 AGAAAGAAAAGAGAGAAAGA
18168051 A
1 A
18168052 AAAAAGTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
17 12 0.39
18 4 0.13
19 10 0.32
20 5 0.16
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (20 bp):
AGAAAGAAAAGAGAGAAAGA
Found at i:18168046 original size:21 final size:23
Alignment explanation
Indices: 18167995--18168048 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 23
18167985 CTACCGGAAG
18167995 AGAAAGAAAAGAGAGAAAGGAGA
1 AGAAAGAAAAGAGAGAAAGGAGA
*
18168018 AAAGAAGAAGAAGA-AGAAA-GA-A
1 AGA-AAGAA-AAGAGAGAAAGGAGA
18168040 AGAAAGAAA
1 AGAAAGAAA
18168049 GAAAAAAAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
20 1 0.04
21 5 0.19
22 3 0.11
23 4 0.15
24 10 0.37
25 4 0.15
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (23 bp):
AGAAAGAAAAGAGAGAAAGGAGA
Found at i:18168280 original size:60 final size:60
Alignment explanation
Indices: 18168210--18168324 Score: 194
Period size: 60 Copynumber: 1.9 Consensus size: 60
18168200 AATTTTTTTA
* * *
18168210 TAATTATTTTAAAATTAATTTGTTAATAATTTGGGATTATGTTATAAATTTTTGTCTTCG
1 TAATTATTTTAAAATTAATTTATTAATAATTTAGGATTATGTTATAAATTATTGTCTTCG
*
18168270 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTATGTTATAAATTATTGT
1 TAATTATTTTAAAATTAATTTATTAATAATTTAGGATTATGTTATAAATTATTGT
18168325 GTTTAGTTTA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
60 51 1.00
ACGTcount: A:0.35, C:0.02, G:0.10, T:0.53
Consensus pattern (60 bp):
TAATTATTTTAAAATTAATTTATTAATAATTTAGGATTATGTTATAAATTATTGTCTTCG
Found at i:18168448 original size:14 final size:14
Alignment explanation
Indices: 18168429--18168455 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
18168419 TTTTTAAATG
18168429 TAAAATTATTTTGT
1 TAAAATTATTTTGT
18168443 TAAAATTATTTTG
1 TAAAATTATTTTG
18168456 CACCATGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (14 bp):
TAAAATTATTTTGT
Found at i:18169167 original size:16 final size:16
Alignment explanation
Indices: 18169143--18169174 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
18169133 TTCTATTTCT
*
18169143 ATTCTTATTTTTTTTA
1 ATTCATATTTTTTTTA
18169159 ATTCATATTTTTTTTA
1 ATTCATATTTTTTTTA
18169175 TGTTTAGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.06, G:0.00, T:0.72
Consensus pattern (16 bp):
ATTCATATTTTTTTTA
Found at i:18170905 original size:12 final size:12
Alignment explanation
Indices: 18170888--18170922 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
18170878 GCATCATGCA
18170888 CCAAAGCCGGAG
1 CCAAAGCCGGAG
**
18170900 CCAAAGTTGGAG
1 CCAAAGCCGGAG
18170912 CCAAAGCCGGA
1 CCAAAGCCGGA
18170923 ACTACACTCT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.34, C:0.29, G:0.31, T:0.06
Consensus pattern (12 bp):
CCAAAGCCGGAG
Found at i:18171126 original size:33 final size:33
Alignment explanation
Indices: 18171089--18171200 Score: 125
Period size: 33 Copynumber: 3.4 Consensus size: 33
18171079 CCTTCCAGCT
* *
18171089 TGTATCCACCACCGTACTCAATTTCTCCCGGCC
1 TGTATCCACCGCCGTACTCCATTTCTCCCGGCC
* * *
18171122 TGTATCTACCGCTGTACTCCATTTTTCCCGGCC
1 TGTATCCACCGCCGTACTCCATTTCTCCCGGCC
* * * * * *
18171155 AGTATCCACTGCCATACTCCACTCCTCCTGGCC
1 TGTATCCACCGCCGTACTCCATTTCTCCCGGCC
18171188 TGTATCCACCGCC
1 TGTATCCACCGCC
18171201 ATACCCACTC
Statistics
Matches: 63, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
33 63 1.00
ACGTcount: A:0.16, C:0.42, G:0.13, T:0.29
Consensus pattern (33 bp):
TGTATCCACCGCCGTACTCCATTTCTCCCGGCC
Found at i:18171202 original size:33 final size:33
Alignment explanation
Indices: 18171070--18171210 Score: 113
Period size: 33 Copynumber: 4.3 Consensus size: 33
18171060 TCCACCTCAG
* * * * * *
18171070 TACTCCGCTCCTTCCAGCTTGTATCCACCACCG
1 TACTCCACTCCTCCCGGCCTGTATCCACCGCCA
* * * * **
18171103 TACTCAATTTCTCCCGGCCTGTATCTACCGCTG
1 TACTCCACTCCTCCCGGCCTGTATCCACCGCCA
* ** * *
18171136 TACTCCATTTTTCCCGGCCAGTATCCACTGCCA
1 TACTCCACTCCTCCCGGCCTGTATCCACCGCCA
*
18171169 TACTCCACTCCTCCTGGCCTGTATCCACCGCCA
1 TACTCCACTCCTCCCGGCCTGTATCCACCGCCA
18171202 TAC-CCACTC
1 TACTCCACTC
18171211 TTCTCGGCTC
Statistics
Matches: 85, Mismatches: 23, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
32 6 0.07
33 79 0.93
ACGTcount: A:0.16, C:0.43, G:0.12, T:0.28
Consensus pattern (33 bp):
TACTCCACTCCTCCCGGCCTGTATCCACCGCCA
Found at i:18171464 original size:24 final size:25
Alignment explanation
Indices: 18171426--18171474 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
18171416 TAATGAATTT
18171426 TTTGTATTTTTATTTAT-CAATTTAA
1 TTTGTATTTTTATTT-TGCAATTTAA
18171451 TTTGT-TTTTTATTTTGCAATTTAA
1 TTTGTATTTTTATTTTGCAATTTAA
18171475 ATATTCAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 1 0.04
24 17 0.74
25 5 0.22
ACGTcount: A:0.24, C:0.04, G:0.06, T:0.65
Consensus pattern (25 bp):
TTTGTATTTTTATTTTGCAATTTAA
Found at i:18174787 original size:58 final size:57
Alignment explanation
Indices: 18174710--18174865 Score: 186
Period size: 57 Copynumber: 2.7 Consensus size: 57
18174700 ATATGATTCT
* * * *
18174710 GCATATGTTGCAGATAGGATATAGCCCGGACGGGTAATCCTGATATGAGCCCTCTCGA
1 GCATATGTTGCATAAAGGATTTAGCCCGGACGGGTAATCCTGAT-TAAGCCCTCTCGA
* * * * ** *
18174768 GCATACGTTGCATAAAGGATTTAGCCCGAACGGGTAATTCTGATTAATCTTTCTCTA
1 GCATATGTTGCATAAAGGATTTAGCCCGGACGGGTAATCCTGATTAAGCCCTCTCGA
* *
18174825 GCATATGCTGTATAAAGGATTTAGCCCGGACGGGTAATCCT
1 GCATATGTTGCATAAAGGATTTAGCCCGGACGGGTAATCCT
18174866 AGCATATGTT
Statistics
Matches: 82, Mismatches: 16, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
57 44 0.54
58 38 0.46
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (57 bp):
GCATATGTTGCATAAAGGATTTAGCCCGGACGGGTAATCCTGATTAAGCCCTCTCGA
Found at i:18174886 original size:42 final size:42
Alignment explanation
Indices: 18174822--18174908 Score: 113
Period size: 42 Copynumber: 2.1 Consensus size: 42
18174812 TAATCTTTCT
* *
18174822 CTAGCATATGCTGTATAAAGGATTTAGCCCGGACGGGTAATC
1 CTAGCATATGCTGCATAAAGGATTTAGCCCGGACGAGTAATC
* * *
18174864 CTAGCATATGTTGCA-AACAGGATTTAGCTCGGATGAGTAATC
1 CTAGCATATGCTGCATAA-AGGATTTAGCCCGGACGAGTAATC
18174906 CTA
1 CTA
18174909 TTATAATTCT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
41 2 0.05
42 37 0.95
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (42 bp):
CTAGCATATGCTGCATAAAGGATTTAGCCCGGACGAGTAATC
Found at i:18179430 original size:46 final size:46
Alignment explanation
Indices: 18179392--18180266 Score: 1707
Period size: 46 Copynumber: 19.0 Consensus size: 46
18179382 ATGAAATGTG
* *
18179392 TAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
18179438 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
18179484 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
18179530 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
18179576 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
18179622 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
18179668 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
18179714 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
18179760 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
18179806 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
18179852 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
18179898 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
18179944 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
18179990 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
18180036 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
18180082 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
18180128 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
18180174 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
*
18180220 TAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAA-GAA
18180266 T
1 T
18180267 GAGTAAGACT
Statistics
Matches: 825, Mismatches: 3, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
45 5 0.01
46 820 0.99
ACGTcount: A:0.43, C:0.15, G:0.24, T:0.18
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
Found at i:18183245 original size:18 final size:20
Alignment explanation
Indices: 18183222--18183279 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
18183212 TTTGGTCAGG
*
18183222 CCGTGTAG-TT-GTACACGC
1 CCGTGTAGCTTGGAACACGC
*
18183240 CCGTGTGGCTTGGAACACGC
1 CCGTGTAGCTTGGAACACGC
*
18183260 CCGTGTGGCTTGGAACACGC
1 CCGTGTAGCTTGGAACACGC
18183280 TAGTGTTCTC
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.19
19 2 0.06
20 27 0.75
ACGTcount: A:0.16, C:0.29, G:0.33, T:0.22
Consensus pattern (20 bp):
CCGTGTAGCTTGGAACACGC
Found at i:18183259 original size:20 final size:20
Alignment explanation
Indices: 18183234--18183279 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
18183224 GTGTAGTTGT
18183234 ACACGCCCGTGTGGCTTGGA
1 ACACGCCCGTGTGGCTTGGA
18183254 ACACGCCCGTGTGGCTTGGA
1 ACACGCCCGTGTGGCTTGGA
18183274 ACACGC
1 ACACGC
18183280 TAGTGTTCTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.17
Consensus pattern (20 bp):
ACACGCCCGTGTGGCTTGGA
Found at i:18183285 original size:20 final size:20
Alignment explanation
Indices: 18183234--18183285 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
18183224 GTGTAGTTGT
*
18183234 ACACGCCCGTGTGGCTTGGA
1 ACACGCCAGTGTGGCTTGGA
*
18183254 ACACGCCCGTGTGGCTTGGA
1 ACACGCCAGTGTGGCTTGGA
*
18183274 ACACGCTAGTGT
1 ACACGCCAGTGT
18183286 TCTCACCCTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.17, C:0.29, G:0.33, T:0.21
Consensus pattern (20 bp):
ACACGCCAGTGTGGCTTGGA
Found at i:18184384 original size:33 final size:33
Alignment explanation
Indices: 18184347--18184428 Score: 137
Period size: 33 Copynumber: 2.5 Consensus size: 33
18184337 GTGCATATTC
*
18184347 CCTTTTCCAGTGGTACACTCAAGGTGTACATTT
1 CCTTTTCCAGTAGTACACTCAAGGTGTACATTT
* *
18184380 CCTTTTCCAGTAGTACACTCGAGGTGTACGTTT
1 CCTTTTCCAGTAGTACACTCAAGGTGTACATTT
18184413 CCTTTTCCAGTAGTAC
1 CCTTTTCCAGTAGTAC
18184429 CTTTTAGGGA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.20, C:0.26, G:0.18, T:0.37
Consensus pattern (33 bp):
CCTTTTCCAGTAGTACACTCAAGGTGTACATTT
Found at i:18186551 original size:11 final size:11
Alignment explanation
Indices: 18186535--18186559 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
18186525 ATACCAGAAT
18186535 AGAAATGGGAA
1 AGAAATGGGAA
18186546 AGAAATGGGAA
1 AGAAATGGGAA
18186557 AGA
1 AGA
18186560 TGCCATTTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.36, T:0.08
Consensus pattern (11 bp):
AGAAATGGGAA
Found at i:18189072 original size:27 final size:27
Alignment explanation
Indices: 18189042--18189126 Score: 100
Period size: 27 Copynumber: 3.1 Consensus size: 27
18189032 CCTATTTGAC
* * *
18189042 AGGCTCAACCAATCGCACCTGTCAGAT
1 AGGCACAACCAATCGCGCCTGTCAAAT
*
18189069 AGGCACAACCAGTCGCGCCTGTCAAAT
1 AGGCACAACCAATCGCGCCTGTCAAAT
* *
18189096 AGG-AGCAACTACTCGCGCCTGTCAAAT
1 AGGCA-CAACCAATCGCGCCTGTCAAAT
18189123 AGGC
1 AGGC
18189127 GCCACTTACC
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
26 1 0.02
27 49 0.98
ACGTcount: A:0.29, C:0.32, G:0.22, T:0.16
Consensus pattern (27 bp):
AGGCACAACCAATCGCGCCTGTCAAAT
Found at i:18192833 original size:43 final size:43
Alignment explanation
Indices: 18192772--18193008 Score: 203
Period size: 43 Copynumber: 5.5 Consensus size: 43
18192762 TTTATTTGAA
* *
18192772 AAAAATGCCGCTATAGAACATGA-CATATAGCAGCGCTTTTCCC
1 AAAAATGCCGCTATAGAACGTGATC-TTTAGCAGCGCTTTTCCC
* * * *
18192815 AAAAATGCCACTATAGAAC-TGACCTTTAG-AGGTGCTTTTGCC
1 AAAAATGCCGCTATAGAACGTGATCTTTAGCA-GCGCTTTTCCC
** *
18192857 GCAAATGCCGCTATAGAACGCGATCTTTAGC-GACGCTTTTCCC
1 AAAAATGCCGCTATAGAACGTGATCTTTAGCAG-CGCTTTTCCC
* * * * * *
18192900 ACAAACGCCACTATAGAATGTAATCTTTAGCGGCGCTTTTCCC
1 AAAAATGCCGCTATAGAACGTGATCTTTAGCAGCGCTTTTCCC
* * * ** * *
18192943 ATAAATGCCGCTATAGAATGTGATCTTTTGTGGCACTTTCCCC
1 AAAAATGCCGCTATAGAACGTGATCTTTAGCAGCGCTTTTCCC
* *
18192986 ACAAATGGCGCTATAGAACGTGA
1 AAAAATGCCGCTATAGAACGTGA
18193009 CCTCCAGCGG
Statistics
Matches: 160, Mismatches: 28, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
41 1 0.01
42 33 0.21
43 125 0.78
44 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (43 bp):
AAAAATGCCGCTATAGAACGTGATCTTTAGCAGCGCTTTTCCC
Found at i:18192917 original size:85 final size:85
Alignment explanation
Indices: 18192774--18193011 Score: 239
Period size: 86 Copynumber: 2.8 Consensus size: 85
18192764 TATTTGAAAA
* * *
18192774 AAATGCCGCTATAGAACATGA-CATATAGC-AGCGCTTTTCCCAAAAATGCCACTATAGAACTGA
1 AAATGCCGCTATAGAACGTGATC-TTTAGCGA-CGCTTTTCCCACAAATGCCACTATAGAACTGA
* * *
18192837 CCTTTAGAGGTGCTTTTGCCGC
64 CCTTTAGAGGCGCTTTTCCCAC
* *
18192859 AAATGCCGCTATAGAACGCGATCTTTAGCGACGCTTTTCCCACAAACGCCACTATAGAA-TGTAA
1 AAATGCCGCTATAGAACGTGATCTTTAGCGACGCTTTTCCCACAAATGCCACTATAGAACTG--A
* * *
18192923 TCTTTAGCGGCGCTTTTCCCAT
64 CCTTTAGAGGCGCTTTTCCCAC
* * * * * * * *
18192945 AAATGCCGCTATAGAATGTGATCTTTTGTGGCACTTTCCCCACAAATGGCGCTATAGAACGTGAC
1 AAATGCCGCTATAGAACGTGATCTTTAGCGACGCTTTTCCCACAAATGCCACTATAGAAC-TGAC
18193010 CT
65 CT
18193012 CCAGCGGCGG
Statistics
Matches: 125, Mismatches: 22, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
84 2 0.02
85 50 0.40
86 71 0.57
88 2 0.02
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (85 bp):
AAATGCCGCTATAGAACGTGATCTTTAGCGACGCTTTTCCCACAAATGCCACTATAGAACTGACC
TTTAGAGGCGCTTTTCCCAC
Found at i:18193300 original size:25 final size:25
Alignment explanation
Indices: 18193227--18193294 Score: 100
Period size: 25 Copynumber: 2.7 Consensus size: 25
18193217 CTTCCTGTAA
*
18193227 CAACCAAAAACAGCAAGTACAAATC
1 CAACCAAAAACAGCAAATACAAATC
* **
18193252 CAACAAAAAACAAAAAATACAAATC
1 CAACCAAAAACAGCAAATACAAATC
18193277 CAACCAAAAACAGCAAAT
1 CAACCAAAAACAGCAAAT
18193295 CTAAATGATA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.63, C:0.25, G:0.04, T:0.07
Consensus pattern (25 bp):
CAACCAAAAACAGCAAATACAAATC
Found at i:18196007 original size:24 final size:24
Alignment explanation
Indices: 18195975--18196032 Score: 98
Period size: 24 Copynumber: 2.4 Consensus size: 24
18195965 AGTATTTTAT
18195975 AATATAATATTAATTTTAGATACA
1 AATATAATATTAATTTTAGATACA
*
18195999 AATATAATATTAATTTTAGTTACA
1 AATATAATATTAATTTTAGATACA
*
18196023 AATATTATAT
1 AATATAATAT
18196033 ACATAGTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (24 bp):
AATATAATATTAATTTTAGATACA
Found at i:18197366 original size:23 final size:23
Alignment explanation
Indices: 18197335--18197378 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
18197325 TAAAATGATA
18197335 TTTTACGGCATTTGTATCATACC
1 TTTTACGGCATTTGTATCATACC
*
18197358 TTTTGCGGCATTTGTATCATA
1 TTTTACGGCATTTGTATCATA
18197379 AACACCGCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.20, C:0.18, G:0.16, T:0.45
Consensus pattern (23 bp):
TTTTACGGCATTTGTATCATACC
Found at i:18197985 original size:8 final size:8
Alignment explanation
Indices: 18197972--18198042 Score: 65
Period size: 8 Copynumber: 9.1 Consensus size: 8
18197962 TAACACCCAT
18197972 AAACCTTA
1 AAACCTTA
18197980 AAACCTTA
1 AAACCTTA
*
18197988 AAACCCT-
1 AAACCTTA
*
18197995 AAACTTTA
1 AAACCTTA
*
18198003 AAACTTTA
1 AAACCTTA
**
18198011 AAACCCCA
1 AAACCTTA
*
18198019 AAA-CTTT
1 AAACCTTA
18198026 AAACCTTA
1 AAACCTTA
*
18198034 AACCCTTA
1 AAACCTTA
18198042 A
1 A
18198043 CCATAGGCCA
Statistics
Matches: 50, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
7 9 0.18
8 41 0.82
ACGTcount: A:0.48, C:0.27, G:0.00, T:0.25
Consensus pattern (8 bp):
AAACCTTA
Found at i:18197997 original size:23 final size:23
Alignment explanation
Indices: 18197966--18198044 Score: 88
Period size: 23 Copynumber: 3.4 Consensus size: 23
18197956 TTTTAGTAAC
18197966 ACCCATAAACCTTAAAACCTTAAA
1 ACCC-TAAACCTTAAAACCTTAAA
* *
18197990 ACCCTAAACTTTAAAACTTTAAA
1 ACCCTAAACCTTAAAACCTTAAA
* * *
18198013 ACCCCAAAACTTTAAACCTT-AA
1 ACCCTAAACCTTAAAACCTTAAA
*
18198035 ACCCTTAACC
1 ACCCTAAACC
18198045 ATAGGCCATA
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
22 9 0.20
23 32 0.71
24 4 0.09
ACGTcount: A:0.46, C:0.30, G:0.00, T:0.24
Consensus pattern (23 bp):
ACCCTAAACCTTAAAACCTTAAA
Found at i:18198012 original size:15 final size:15
Alignment explanation
Indices: 18197980--18198035 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 15
18197970 ATAAACCTTA
**
18197980 AAACCTTAAAACCCT
1 AAACCTTAAAACTTT
*
18197995 AAACTTTAAAACTTT
1 AAACCTTAAAACTTT
**
18198010 AAAACCCCAAAACTTT
1 -AAACCTTAAAACTTT
18198026 AAACCTTAAA
1 AAACCTTAAA
18198036 CCCTTAACCA
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
15 20 0.62
16 12 0.38
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (15 bp):
AAACCTTAAAACTTT
Found at i:18198089 original size:21 final size:21
Alignment explanation
Indices: 18198032--18198078 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
18198022 CTTTAAACCT
** **
18198032 TAAACCCTTAACCATAGGCCA
1 TAAACCCAAAACCATATACCA
18198053 TAAACCCAAAACCATATACCA
1 TAAACCCAAAACCATATACCA
18198074 TAAAC
1 TAAAC
18198079 TCAATAACAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.47, C:0.32, G:0.04, T:0.17
Consensus pattern (21 bp):
TAAACCCAAAACCATATACCA
Found at i:18198428 original size:40 final size:40
Alignment explanation
Indices: 18198346--18198430 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
18198336 GGCGTTTATG
* * * *
18198346 AAAAACGCCACTAATGCATAACCTTTGTGGCGTTTCTAGT
1 AAAAACGCCACCAATGCATAACATTTGCGGCATTTCTAGT
* * * *
18198386 AAAAACGCCACCAATGTATAACATTTGCGGTATTTGTTGT
1 AAAAACGCCACCAATGCATAACATTTGCGGCATTTCTAGT
18198426 AAAAA
1 AAAAA
18198431 AATGCCACAA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.29
Consensus pattern (40 bp):
AAAAACGCCACCAATGCATAACATTTGCGGCATTTCTAGT
Found at i:18199847 original size:43 final size:45
Alignment explanation
Indices: 18199779--18199868 Score: 130
Period size: 43 Copynumber: 2.0 Consensus size: 45
18199769 AATAGAATAA
*
18199779 GACATTAGGTTATTGAATTGTGATTACATGTAAGACCATGTCTGG
1 GACATTAGGTTATTGAATTGAGATTACATGTAAGACCATGTCTGG
* * *
18199824 GACATT-GG-TATTGTATTGAGATTACGTGTAAGACTATGTCTGG
1 GACATTAGGTTATTGAATTGAGATTACATGTAAGACCATGTCTGG
18199867 GA
1 GA
18199869 TTTGGCATCA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
43 33 0.80
44 2 0.05
45 6 0.15
ACGTcount: A:0.28, C:0.10, G:0.27, T:0.36
Consensus pattern (45 bp):
GACATTAGGTTATTGAATTGAGATTACATGTAAGACCATGTCTGG
Found at i:18199937 original size:43 final size:43
Alignment explanation
Indices: 18199797--18199942 Score: 140
Period size: 43 Copynumber: 3.4 Consensus size: 43
18199787 GTTATTGAAT
* * *
18199797 TGTGATTACATGTAAGACCATGTCTGGGACATTGGTATTG-TA
1 TGTGATTACATGTAAGACCTTGTCTGGGACATTGGCATCGATA
* * *
18199839 TTGAGATTACGTGTAAGA-CTATGTCTGGGA-TTTGGCATC-AT-
1 -TGTGATTACATGTAAGACCT-TGTCTGGGACATTGGCATCGATA
* *
18199880 TAGTTGATTTCATGTAAGACCTTGTCTGGGACAATGGCATCGATA
1 T-G-TGATTACATGTAAGACCTTGTCTGGGACATTGGCATCGATA
*
18199925 TGTGATAACATGTAAGAC
1 TGTGATTACATGTAAGAC
18199943 TATATATGAG
Statistics
Matches: 82, Mismatches: 13, Indels: 16
0.74 0.12 0.14
Matches are distributed among these distances:
40 1 0.01
41 1 0.01
42 29 0.35
43 47 0.57
44 3 0.04
45 1 0.01
ACGTcount: A:0.27, C:0.13, G:0.25, T:0.34
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCTTGTCTGGGACATTGGCATCGATA
Found at i:18199960 original size:85 final size:85
Alignment explanation
Indices: 18199799--18199961 Score: 202
Period size: 85 Copynumber: 1.9 Consensus size: 85
18199789 TATTGAATTG
* * * * * * *
18199799 TGATTACATGTAAGACCATGTCTGGGACATTGGTATTGTATTGAGATTACGTGTAAGACTATGTC
1 TGATTACATGTAAGACCATGTCTGGGACAATGGCATCGTATTGAGATAACATGTAAGACTATATA
* *
18199864 TGGGATTTGGCATCATTAGT
66 TGAGATATGGCATCATTAGT
* * *
18199884 TGATTTCATGTAAGACCTTGTCTGGGACAATGGCATCG-ATATGTGATAACATGTAAGACTATAT
1 TGATTACATGTAAGACCATGTCTGGGACAATGGCATCGTAT-TGAGATAACATGTAAGACTATAT
18199948 ATGAGATATGGCAT
65 ATGAGATATGGCAT
18199962 TGTACGAACT
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
84 2 0.03
85 63 0.97
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.34
Consensus pattern (85 bp):
TGATTACATGTAAGACCATGTCTGGGACAATGGCATCGTATTGAGATAACATGTAAGACTATATA
TGAGATATGGCATCATTAGT
Found at i:18202176 original size:24 final size:23
Alignment explanation
Indices: 18202143--18202189 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
18202133 TACATAAGTC
*
18202143 AAAGATTTCTTG-ATTAGAAACAT
1 AAAGATTTCTGGAATT-GAAACAT
18202166 AAAGAGTTTCTGGAATTGAAACAT
1 AAAGA-TTTCTGGAATTGAAACAT
18202190 GGCCGAATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 5 0.24
24 13 0.62
25 3 0.14
ACGTcount: A:0.43, C:0.09, G:0.17, T:0.32
Consensus pattern (23 bp):
AAAGATTTCTGGAATTGAAACAT
Found at i:18207551 original size:43 final size:44
Alignment explanation
Indices: 18207491--18207606 Score: 148
Period size: 43 Copynumber: 2.7 Consensus size: 44
18207481 TAGGTTATCG
* * *
18207491 AATTGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTG-T
1 AATTG-GATTACGTGTAAGACCATGTCTAGGACATTGGCATCGTT
18207535 -ATTGAGATTACGTGTAAGACCATGTCTAGGACATTGGCATCGTT
1 AATTG-GATTACGTGTAAGACCATGTCTAGGACATTGGCATCGTT
* *
18207579 AATT-GATTTCGTGTAAGACCCTGTCTAG
1 AATTGGATTACGTGTAAGACCATGTCTAG
18207607 AACAGTGACA
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
43 60 0.94
44 1 0.02
45 3 0.05
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.34
Consensus pattern (44 bp):
AATTGGATTACGTGTAAGACCATGTCTAGGACATTGGCATCGTT
Found at i:18207619 original size:43 final size:43
Alignment explanation
Indices: 18207494--18207643 Score: 124
Period size: 43 Copynumber: 3.5 Consensus size: 43
18207484 GTTATCGAAT
* * * * * * *
18207494 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TA
1 TGTGATTTCGTGTAAGACCATGTCTAGAACAGTGACATCGATA
* * * * * *
18207536 TTGAGATTACGTGTAAGACCATGTCTAGGACATTGGCATCGTTAA
1 -TGTGATTTCGTGTAAGACCATGTCTAGAACAGTGACATCGAT-A
*
18207581 T-TGATTTCGTGTAAGACCCTGTCTAGAACAGTGACATCGATA
1 TGTGATTTCGTGTAAGACCATGTCTAGAACAGTGACATCGATA
* *
18207623 TGTGATATCATGTAAGACCAT
1 TGTGATTTCGTGTAAGACCAT
18207644 ATATGAGATA
Statistics
Matches: 90, Mismatches: 14, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
42 2 0.02
43 85 0.94
44 2 0.02
45 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (43 bp):
TGTGATTTCGTGTAAGACCATGTCTAGAACAGTGACATCGATA
Found at i:18210524 original size:22 final size:22
Alignment explanation
Indices: 18210493--18210542 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
18210483 TTGAAATTTT
18210493 GTGCACAGTGTGCATGTGTCTC
1 GTGCACAGTGTGCATGTGTCTC
*
18210515 GTGCAGAGTGTGCATGTGTCTC
1 GTGCACAGTGTGCATGTGTCTC
*
18210537 ATGCAC
1 GTGCAC
18210543 CTCTTCCAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.16, C:0.22, G:0.32, T:0.30
Consensus pattern (22 bp):
GTGCACAGTGTGCATGTGTCTC
Found at i:18212061 original size:29 final size:27
Alignment explanation
Indices: 18211993--18212061 Score: 66
Period size: 29 Copynumber: 2.4 Consensus size: 27
18211983 TTTTTTTACC
*
18211993 AAATGTATATAAACATTAAAAATTATA
1 AAATATATATAAACATTAAAAATTATA
* * * *
18212020 AAAAATAAAATAAATATATAAAAATTTTGA
1 AAATAT-ATATAAACAT-TAAAAATTAT-A
18212050 AAATATATATAA
1 AAATATATATAA
18212062 TCTAGGAAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
27 4 0.12
28 8 0.25
29 14 0.44
30 6 0.19
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (27 bp):
AAATATATATAAACATTAAAAATTATA
Found at i:18215841 original size:48 final size:48
Alignment explanation
Indices: 18215723--18215861 Score: 138
Period size: 48 Copynumber: 2.9 Consensus size: 48
18215713 ACTCTGGAGT
* *
18215723 CTCGCACCCTAAGTGCTAAAATCATGGCCCAAAGCCAAATCAAGGTAA
1 CTCGCACCCGAAGTGCTAATATCATGGCCCAAAGCCAAATCAAGGTAA
* ** * * * * *
18215771 CTTG-TGCTGAAAGTACTGATATCATGGACCGAAGCCAAATC-AGTGTAA
1 CTCGCACCCG-AAGTGCTAATATCATGGCCCAAAGCCAAATCAAG-GTAA
* *
18215819 CTCGCACCCGAAGTGCTAATATCATGGCCCTAAGCCAACTCAA
1 CTCGCACCCGAAGTGCTAATATCATGGCCCAAAGCCAAATCAA
18215862 TATAAACCCT
Statistics
Matches: 68, Mismatches: 19, Indels: 7
0.72 0.20 0.07
Matches are distributed among these distances:
47 3 0.04
48 62 0.91
49 3 0.04
ACGTcount: A:0.34, C:0.27, G:0.19, T:0.20
Consensus pattern (48 bp):
CTCGCACCCGAAGTGCTAATATCATGGCCCAAAGCCAAATCAAGGTAA
Found at i:18220817 original size:41 final size:36
Alignment explanation
Indices: 18220737--18220811 Score: 132
Period size: 36 Copynumber: 2.1 Consensus size: 36
18220727 ATGGCATGTA
*
18220737 TAAGTTAATAAAGTATAAGCTAAGGTGTAATGAATG
1 TAAGTTAATAAAGTAAAAGCTAAGGTGTAATGAATG
*
18220773 TAAGTTAATAAAGTAAAAGTTAAGGTGTAATGAATG
1 TAAGTTAATAAAGTAAAAGCTAAGGTGTAATGAATG
18220809 TAA
1 TAA
18220812 AGTAAGCCAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.47, C:0.01, G:0.21, T:0.31
Consensus pattern (36 bp):
TAAGTTAATAAAGTAAAAGCTAAGGTGTAATGAATG
Found at i:18222588 original size:2 final size:2
Alignment explanation
Indices: 18222583--18222609 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
18222573 CATATATATA
18222583 TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG T
18222610 TAAACTTGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:18234081 original size:21 final size:21
Alignment explanation
Indices: 18234049--18234091 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
18234039 ATTTCGTTTT
18234049 ATTTTGTTTATTAAATTATTA
1 ATTTTGTTTATTAAATTATTA
* *
18234070 ATTTT-TTCTATTTAGTTATTA
1 ATTTTGTT-TATTAAATTATTA
18234091 A
1 A
18234092 ACTTTTTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.63
Consensus pattern (21 bp):
ATTTTGTTTATTAAATTATTA
Found at i:18238236 original size:36 final size:33
Alignment explanation
Indices: 18238196--18238272 Score: 84
Period size: 36 Copynumber: 2.2 Consensus size: 33
18238186 TAAAATACTA
18238196 TTTTAAAAATAAATTAAACATATT-TTAACCAAAT
1 TTTTAAAAATAAATTAAA-ATATTCTTAA-CAAAT
* **
18238230 CGTTTTAAATATTTATTAAAATATTCTTAACAAAT
1 --TTTTAAAAATAAATTAAAATATTCTTAACAAAT
18238265 TTTTAAAA
1 TTTTAAAA
18238273 GTTTCACTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
33 7 0.19
35 10 0.28
36 19 0.53
ACGTcount: A:0.48, C:0.08, G:0.01, T:0.43
Consensus pattern (33 bp):
TTTTAAAAATAAATTAAAATATTCTTAACAAAT
Found at i:18250668 original size:19 final size:20
Alignment explanation
Indices: 18250624--18250669 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
18250614 AAATAAACAT
*
18250624 ATAAAAATATTAAAAATTAG
1 ATAAAAATATTAAAAATTAC
*
18250644 AAAAAAAT-TTATAAAA-TAC
1 ATAAAAATATTA-AAAATTAC
18250663 ATAAAAA
1 ATAAAAA
18250670 AGACCCTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
19 11 0.50
20 11 0.50
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (20 bp):
ATAAAAATATTAAAAATTAC
Found at i:18250668 original size:20 final size:19
Alignment explanation
Indices: 18250608--18250670 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 19
18250598 AAAATTTATT
18250608 AAATTTAAATAA-ACATATAA
1 AAATTTAAA-AATACATA-AA
*
18250628 AAATATTAAAAATTAGA-AAA
1 AAAT-TTAAAAA-TACATAAA
18250648 AAATTTATAAAATACATAAA
1 AAATTTA-AAAATACATAAA
18250668 AAA
1 AAA
18250671 GACCCTTTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
19 6 0.17
20 22 0.61
21 6 0.17
22 2 0.06
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.27
Consensus pattern (19 bp):
AAATTTAAAAATACATAAA
Found at i:18251178 original size:22 final size:20
Alignment explanation
Indices: 18251132--18251179 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 20
18251122 TTTTGATGAT
*
18251132 TTTTATATTTTCTTTTACAAT
1 TTTTATATTTT-TTTTACAAA
*
18251153 TTTTATACTTTTTTTTTCTAAA
1 TTTTATA-TTTTTTTTAC-AAA
18251175 TTTTA
1 TTTTA
18251180 GTAATTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 12 0.52
22 11 0.48
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (20 bp):
TTTTATATTTTTTTTACAAA
Found at i:18254099 original size:15 final size:15
Alignment explanation
Indices: 18254075--18254105 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
18254065 GAATATGTCA
18254075 TTTTCAATATTTAAG
1 TTTTCAATATTTAAG
*
18254090 TTTTCGATATTTAAG
1 TTTTCAATATTTAAG
18254105 T
1 T
18254106 AGCAACTGTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.06, G:0.10, T:0.55
Consensus pattern (15 bp):
TTTTCAATATTTAAG
Found at i:18255201 original size:40 final size:41
Alignment explanation
Indices: 18255132--18255210 Score: 101
Period size: 40 Copynumber: 2.0 Consensus size: 41
18255122 AAATACATAT
*
18255132 ATAATATAATGTTAAAACATTTACATAAT-ATA-TACATGC
1 ATAATATAATGTTAAAACACTTACATAATAATATTACATGC
*
18255171 ATAATAATAATGTTGAAAACACTTA-TTAATAATATTACAT
1 ATAAT-ATAATGTT-AAAACACTTACATAATAATATTACAT
18255211 AAACATATAC
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
39 5 0.15
40 12 0.35
41 12 0.35
42 5 0.15
ACGTcount: A:0.49, C:0.09, G:0.05, T:0.37
Consensus pattern (41 bp):
ATAATATAATGTTAAAACACTTACATAATAATATTACATGC
Found at i:18255273 original size:21 final size:21
Alignment explanation
Indices: 18255200--18255275 Score: 61
Period size: 21 Copynumber: 3.6 Consensus size: 21
18255190 CACTTATTAA
18255200 TAATATTACAT-AAACATATACC
1 TAATATTA-ATAAAACATATA-C
* *
18255222 T-ATATGTATTAAAGATATATAC
1 TAATAT-TAATAAA-ACATATAC
18255244 ATAA-A-TAATAAAACATATAC
1 -TAATATTAATAAAACATATAC
18255264 TAATATTAATAA
1 TAATATTAATAA
18255276 TAATAAGAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 15
0.69 0.06 0.24
Matches are distributed among these distances:
19 3 0.07
20 8 0.19
21 17 0.40
22 6 0.14
23 8 0.19
24 1 0.02
ACGTcount: A:0.54, C:0.09, G:0.03, T:0.34
Consensus pattern (21 bp):
TAATATTAATAAAACATATAC
Found at i:18255466 original size:20 final size:19
Alignment explanation
Indices: 18255443--18255508 Score: 51
Period size: 22 Copynumber: 3.2 Consensus size: 19
18255433 TACGAAAATA
*
18255443 ATACTATATATAAAATATGT
1 ATACTA-ATATAAAATATAT
*
18255463 ATACAAGAATAATAAAATATAT
1 ATAC--TAAT-ATAAAATATAT
*
18255485 ATACTAATATTAATAATAAAT
1 ATACTAATA-TAA-AATATAT
18255506 ATA
1 ATA
18255509 GTAGGAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
19 1 0.03
20 10 0.27
21 11 0.30
22 15 0.41
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.35
Consensus pattern (19 bp):
ATACTAATATAAAATATAT
Found at i:18255657 original size:22 final size:25
Alignment explanation
Indices: 18255612--18255685 Score: 66
Period size: 21 Copynumber: 3.0 Consensus size: 25
18255602 GATGATATGG
*
18255612 AAATATGTACATAGAATAGTATATAAAA
1 AAATATATACAT--AATA-TATATAAAA
**
18255640 AAATATA-AC-TAATA-ATAT-TGA
1 AAATATATACATAATATATATAAAA
18255661 AAATATATACATAATATATATAAAA
1 AAATATATACATAATATATATAAAA
18255686 CATATACGAT
Statistics
Matches: 37, Mismatches: 5, Indels: 11
0.70 0.09 0.21
Matches are distributed among these distances:
21 8 0.22
22 6 0.16
23 5 0.14
24 8 0.22
25 1 0.03
26 1 0.03
27 2 0.05
28 6 0.16
ACGTcount: A:0.59, C:0.04, G:0.05, T:0.31
Consensus pattern (25 bp):
AAATATATACATAATATATATAAAA
Found at i:18255690 original size:22 final size:22
Alignment explanation
Indices: 18255631--18255706 Score: 59
Period size: 23 Copynumber: 3.4 Consensus size: 22
18255621 CATAGAATAG
18255631 TATATA-AAAAAATATA-ACTAA
1 TATATATAAAAAATATACA-TAA
*
18255652 TA-ATATTGAAAATATATACATAA
1 TATATA-T-AAAAAATATACATAA
*
18255675 TATATATAAAACATATACGATATA
1 TATATATAAAAAATATAC-ATA-A
*
18255699 TACATATA
1 TATATATA
18255707 CATTAGAAAT
Statistics
Matches: 45, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
20 3 0.07
21 2 0.04
22 10 0.22
23 18 0.40
24 12 0.27
ACGTcount: A:0.58, C:0.07, G:0.03, T:0.33
Consensus pattern (22 bp):
TATATATAAAAAATATACATAA
Found at i:18255690 original size:24 final size:23
Alignment explanation
Indices: 18255589--18255691 Score: 75
Period size: 24 Copynumber: 4.3 Consensus size: 23
18255579 AATGTTTAAG
* **
18255589 AATATATACATAAGATGATATGGA
1 AATATATACATAATAT-ATATAAA
*
18255613 AATATGTACATAGAATAGTATATAAA
1 AATATATACAT--AATA-TATATAAA
* *
18255639 AAAATATA-ACTAATA-ATATTGAA
1 AATATATACA-TAATATATA-TAAA
18255662 AATATATACATAATATATATAAA
1 AATATATACATAATATATATAAA
18255685 ACATATA
1 A-ATATA
18255692 CGATATATAC
Statistics
Matches: 62, Mismatches: 9, Indels: 16
0.71 0.10 0.18
Matches are distributed among these distances:
22 3 0.05
23 19 0.31
24 23 0.37
25 1 0.02
26 15 0.24
27 1 0.02
ACGTcount: A:0.56, C:0.05, G:0.08, T:0.31
Consensus pattern (23 bp):
AATATATACATAATATATATAAA
Found at i:18255841 original size:19 final size:20
Alignment explanation
Indices: 18255803--18255846 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
18255793 GAAATACTTA
* *
18255803 ATATACAATATTAGAAATAT
1 ATATACAACATTAAAAATAT
18255823 ATATACAACA-TAAAAATAT
1 ATATACAACATTAAAAATAT
18255842 ATATA
1 ATATA
18255847 ATGTAGTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.59, C:0.07, G:0.02, T:0.32
Consensus pattern (20 bp):
ATATACAACATTAAAAATAT
Found at i:18256175 original size:16 final size:16
Alignment explanation
Indices: 18256154--18256184 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
18256144 ATAAGTATAC
18256154 ATATATATGTACTAAA
1 ATATATATGTACTAAA
18256170 ATATATATGTACTAA
1 ATATATATGTACTAA
18256185 TATCATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (16 bp):
ATATATATGTACTAAA
Found at i:18258410 original size:13 final size:14
Alignment explanation
Indices: 18258374--18258408 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
18258364 GAGTTGATTT
*
18258374 TTGAAAAATATAAA
1 TTGAAAAATAGAAA
18258388 TTGAAAAATAGAAA
1 TTGAAAAATAGAAA
18258402 TTGAAAA
1 TTGAAAA
18258409 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.63, C:0.00, G:0.11, T:0.26
Consensus pattern (14 bp):
TTGAAAAATAGAAA
Found at i:18258447 original size:87 final size:85
Alignment explanation
Indices: 18258211--18258462 Score: 274
Period size: 91 Copynumber: 2.8 Consensus size: 85
18258201 AACAGACATT
* * *
18258211 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCACAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAG-ACGTGA-CCGAGGCTCAACTCACCTCTCGCAATATGAG
* * *
18258276 TTGTTTTTTTTTTGAAACTTAATTTG
64 TTG----ATTTTTGAAAATTAAATTG
* **
18258302 AAAAGCAGATTTTGAAAATACCTC-GACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGAAATTGAAAATACCTCAGAC--GTGA-CCGAGGCTCAACTCACCTCTCGCAATATGA
18258366 GTTGATTTTTGAAAAATATAAATTG
63 GTTGATTTTTG-AAAAT-TAAATTG
* * *
18258391 AAAAATAGAAATTGAAAATACCTCAG-CGTGTCCTGAGGCTGAACTCACCTCTCGCAATATGAGT
1 AAAAACAGAAATTGAAAATACCTCAGACGTGACC-GAGGCTCAACTCACCTCTCGCAATATGAGT
18258455 TGATTTTT
65 TGATTTTT
18258463 TTTGAAAAGC
Statistics
Matches: 139, Mismatches: 16, Indels: 16
0.81 0.09 0.09
Matches are distributed among these distances:
86 2 0.01
87 46 0.33
88 4 0.03
89 29 0.21
90 2 0.01
91 56 0.40
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (85 bp):
AAAAACAGAAATTGAAAATACCTCAGACGTGACCGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAATTAAATTG
Found at i:18258514 original size:76 final size:75
Alignment explanation
Indices: 18258392--18258772 Score: 403
Period size: 76 Copynumber: 4.9 Consensus size: 75
18258382 TATAAATTGA
* * *
18258392 AAAATAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTGAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCGGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
18258457 ATTTTTTTTG
66 ATTTTTTTTG
*
18258467 AAAAGCAGAAATTGAAAATACCTCGGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAATT
1 AAAA-CAGAAATTGAAAATACCTCGGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
18258532 GA-TTTTTTTG
65 GATTTTTTTTG
* * * *
18258542 AAAAGCAGAAATTGAAAATACCTTGGCGTGCCCTGAGGCGAGGCTCAACTCGCCTCTCGCAATAC
1 AAAA-CAGAAATTGAAAATACCTCGGCGTGTCCT-----GAGGCTCAACTCACCTCTCGCAATAT
18258607 GAGTTGACTTTTTTTTTTAG
60 GAGTTGA---TTTTTTTT-G
* * * *
18258627 AAAACAGGAATTAAAAATACCTCAGCGTGTGTCCTGAGGCTTAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTC-G-GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
18258692 TGA---TTTTTG
64 TGATTTTTTTTG
** * ** * * * *
18258701 -AAACATTAATTGAAAATACCTCGGCATGTGACCCAACGCTCAACTTACCTCTAGCAATATGAAT
1 AAAACAGAAATTGAAAATACCTCGGC--GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
18258765 TGATTTTT
64 TGATTTTT
18258773 GAAAAACATA
Statistics
Matches: 259, Mismatches: 29, Indels: 35
0.80 0.09 0.11
Matches are distributed among these distances:
71 1 0.00
72 1 0.00
73 51 0.20
74 1 0.00
75 49 0.19
76 60 0.23
80 30 0.12
81 30 0.12
84 23 0.09
85 6 0.02
86 7 0.03
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (75 bp):
AAAACAGAAATTGAAAATACCTCGGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTTTG
Found at i:18258697 original size:161 final size:153
Alignment explanation
Indices: 18258399--18258879 Score: 510
Period size: 161 Copynumber: 3.1 Consensus size: 153
18258389 TGAAAAATAG
* * * *
18258399 AAATTGAAAATACCTCAGC--GTGTCCTGAGGCTGAACTCACCTCTCGCAATATGAGTTGA--TT
1 AAATTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*
18258460 TTTTTTGAAAAGCAGAAATTGAAAATACCTCGGC-GTGTCCTGAGGCTCAACTCACCTCTCGCAA
66 TTTTTTGAAAA-CAGAAATTGAAAATACCTCAGCGGTGTCCTGAGGCTCAACTCACCTCTCGCAA
* *
18258524 TATGAATTGATTTTTTTGAAAAGCAG
130 TATGAGTTGA-TTTTTTGAAAA-CAT
* * ** * *
18258550 AAATTGAAAATACCTTGGCGTGCCCTGAGGCGAGGCTCAACTCGCCTCTCGCAATACGAGTTGAC
1 AAATTGAAAATACCTCGGCATG---TGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
* * *
18258615 TTTTTTTTTTAGAAAACAGGAATTAAAAATACCTCAGCGTGTGTCCTGAGGCTTAACTCACCTCT
62 TTTTTTTTTT-GAAAACAGAAATTGAAAATACCTCAGCG-GTGTCCTGAGGCTCAACTCACCTCT
18258680 CGCAATATGAGTTGA-TTTTTG-AAACAT
125 CGCAATATGAGTTGATTTTTTGAAAACAT
* * * * * *
18258707 TAATTGAAAATACCTCGGCATGTGACCCAACGCTCAACTTACCTCTAGCAATATGAATTGATTTT
1 AAATTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
**
18258772 TGAAAAACATAAATTGAAAAACAGAAATTGAAAATACCTCAGC-GTGTCCTGAGGCTCAACTCAC
66 T--------T-TTTTG-AAAACAGAAATTGAAAATACCTCAGCGGTGTCCTGAGGCTCAACTCAC
18258836 CTCTCGCAATATGAGTTGATTTTTTGAAAAACAT
121 CTCTCGCAATATGAGTTGATTTTTTG-AAAACAT
18258870 AAATTGAAAA
1 AAATTGAAAA
18258880 ACAGAAATTG
Statistics
Matches: 273, Mismatches: 33, Indels: 36
0.80 0.10 0.11
Matches are distributed among these distances:
151 17 0.06
153 6 0.02
154 30 0.11
156 32 0.12
157 21 0.08
158 3 0.01
159 33 0.12
160 44 0.16
161 46 0.17
162 26 0.10
163 15 0.05
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (153 bp):
AAATTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TTTTTTGAAAACAGAAATTGAAAATACCTCAGCGGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
ATGAGTTGATTTTTTGAAAACAT
Found at i:18258751 original size:73 final size:75
Alignment explanation
Indices: 18258392--18258791 Score: 382
Period size: 75 Copynumber: 5.2 Consensus size: 75
18258382 TATAAATTGA
* * * *
18258392 AAAATAGAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTGAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGT
18258455 TGATTTTTTTTG
66 TGA--TTTTTTG
* *
18258467 AAAAGCAGAAATTGAAAATACCTCGGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAA
1 AAAA-CAGAAATTGAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
18258530 TTGATTTTTTTG
65 TTGA-TTTTTTG
* ** * *
18258542 AAAAGCAGAAATTGAAAATACCTTGGCGTGCCCTGAGGCGAGGCTCAACTCGCCTCTCGCAATAC
1 AAAA-CAGAAATTGAAAATACCTCGGCGTG---TGACCCGAGGCTCAACTCACCTCTCGCAATAT
18258607 GAGTTGACTTTTTTTTTTAG
62 GAGTTGA-----TTTTTT-G
* * * * * *
18258627 AAAACAGGAATTAAAAATACCTCAGCGTGTGTCCTGAGGCTTAACTCACCTCTCGCAATATGAGT
1 AAAACAGAAATTGAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGT
18258692 TGA-TTTTTG
66 TGATTTTTTG
** * * * * * *
18258701 -AAACATTAATTGAAAATACCTCGGCATGTGACCCAACGCTCAACTTACCTCTAGCAATATGAAT
1 AAAACAGAAATTGAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGT
18258765 TGA-TTTTTG
66 TGATTTTTTG
*
18258774 AAAAACATAAATTGAAAA
1 -AAAACAGAAATTGAAAA
18258792 ACAGAAATTG
Statistics
Matches: 276, Mismatches: 36, Indels: 26
0.82 0.11 0.08
Matches are distributed among these distances:
73 60 0.22
74 1 0.00
75 61 0.22
76 58 0.21
78 1 0.00
80 30 0.11
81 32 0.12
84 28 0.10
85 5 0.02
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (75 bp):
AAAACAGAAATTGAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTG
Found at i:18258790 original size:14 final size:14
Alignment explanation
Indices: 18258771--18258805 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
18258761 GAATTGATTT
*
18258771 TTGAAAAACATAAA
1 TTGAAAAACAGAAA
18258785 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
18258799 TTGAAAA
1 TTGAAAA
18258806 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.63, C:0.06, G:0.11, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:18258878 original size:14 final size:14
Alignment explanation
Indices: 18258859--18258893 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
18258849 AGTTGATTTT
*
18258859 TTGAAAAACATAAA
1 TTGAAAAACAGAAA
18258873 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
18258887 TTGAAAA
1 TTGAAAA
18258894 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.63, C:0.06, G:0.11, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:18258887 original size:88 final size:88
Alignment explanation
Indices: 18258738--18258962 Score: 416
Period size: 88 Copynumber: 2.6 Consensus size: 88
18258728 GTGACCCAAC
* * *
18258738 GCTCAACTTACCTCTAGCAATATGAATTGA-TTTTTGAAAAACATAAATTGAAAAACAGAAATTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATTGAAAAACAGAAATTG
18258802 AAAATACCTCAGCGTGTCCTGAG
66 AAAATACCTCAGCGTGTCCTGAG
18258825 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATTGAAAAACAGAAATTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATTGAAAAACAGAAATTG
18258890 AAAATACCTCAGCGTGTCCTGAG
66 AAAATACCTCAGCGTGTCCTGAG
18258913 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATT
18258963 CAAACATCAG
Statistics
Matches: 134, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
87 27 0.20
88 107 0.80
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.29
Consensus pattern (88 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATTGAAAAACAGAAATTG
AAAATACCTCAGCGTGTCCTGAG
Found at i:18261934 original size:19 final size:19
Alignment explanation
Indices: 18261910--18261950 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
18261900 ATTGAACATG
18261910 TCGTATGATACAACATATA
1 TCGTATGATACAACATATA
18261929 TCGTATGATACAACATATA
1 TCGTATGATACAACATATA
18261948 TCG
1 TCG
18261951 CCTTTTCTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (19 bp):
TCGTATGATACAACATATA
Found at i:18270965 original size:359 final size:358
Alignment explanation
Indices: 18270300--18271008 Score: 1215
Period size: 359 Copynumber: 2.0 Consensus size: 358
18270290 AGTCGCCAGC
18270300 TGTAGCGACGGAAAAATTTTACTTTGGTCACTAATTGAGGTGACTTATTAGAAATTTAAAAAACC
1 TGTAGCGACGGAAAAATTTTACTTTGGTCACTAATTGAGGTGACTTATTAGAAATTTAAAAAACC
18270365 GACTTTCGGTTCTATTAAAAAAAGAGTCGCCACCGATCTTTTTTCTAGATGTGATCGGACACCTA
66 GACTTTCGGTTCTATTAAAAAAAGAGTCGCCACCGATCTTTTTTCTAGATGTGATCGGACACCTA
18270430 ATAAATCATCTTTTTTTGAAAAGAAAATTTATTCTTGAACAAAAATGAAGGCCAAATTTGGGTCT
131 ATAAATCATCTTTTTTTGAAAAGAAAATTTATTCTTGAACAAAAATGAAGGCCAAATTTGGGTCT
* *
18270495 ATGCGAAAATCTAGAGAAAAATAGGGTTCAAGAGTCGGTTACGTGCGAGGAAGGTATTAGCACCT
196 ACGCGAAAATCCAGAGAAAAATAGGGTTCAAGAGTCGGTTACGTGCGAGGAAGGTATTAGCACCT
* **
18270560 TCGCGACGCCCAAAATTGGTATCTTTATTAAACATGCGTTGTCTTGATTTTCAAAAATACGAGTT
261 TCGCGACGCCCAAAATTGGTATCTTTATTAAACATGCGTCGTCTTGATTTAAAAAAATACGAGTT
18270625 CAATTTGACATTTACTCGTGATCCGTTCCTTGT
326 CAATTTGACATTTACTCGTGATCCGTTCCTTGT
* * * * *
18270658 TGTAGCGACGTAAAAATTTTGCTTTGGTCGCTAATTGAGGTGACTTATTGGAAATTTAAAAAATC
1 TGTAGCGACGGAAAAATTTTACTTTGGTCACTAATTGAGGTGACTTATTAGAAATTTAAAAAACC
* *
18270723 GACTTTCGGTTTTATTAAAAAAAGAGTCGCCACCGATCTTTTTT-TAGGTGTGATCGGACACCTA
66 GACTTTCGGTTCTATTAAAAAAAGAGTCGCCACCGATCTTTTTTCTAGATGTGATCGGACACCTA
* * *
18270787 ATAAATCTTTTTTTTTTTTGAAAAGAAAATTTATTTTTGAACAAAAATGAAGGCCAAATTTGGGT
131 ATAAATC--ATCTTTTTTTGAAAAGAAAATTTATTCTTGAACAAAAATGAAGGCCAAATTTGGGT
**
18270852 CTACGCGAAAATCCAGAGAAAAATAGGGTTCGGGAGTCGGTTACGTGCGAGGAAGGTATTAGCAC
194 CTACGCGAAAATCCAGAGAAAAATAGGGTTCAAGAGTCGGTTACGTGCGAGGAAGGTATTAGCA-
*
18270917 CCTT-TCGACGCCCAAAATTGGTATCTTTATTAAACATGCGTCGTCTTGATTTAAAAAAATACGA
258 CCTTCGCGACGCCCAAAATTGGTATCTTTATTAAACATGCGTCGTCTTGATTTAAAAAAATACGA
18270981 GTTCAATTTGACATTTACTCGTGATCCG
323 GTTCAATTTGACATTTACTCGTGATCCG
18271009 ATTGAAAAAT
Statistics
Matches: 330, Mismatches: 18, Indels: 5
0.93 0.05 0.01
Matches are distributed among these distances:
357 26 0.08
358 103 0.31
359 197 0.60
360 4 0.01
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.33
Consensus pattern (358 bp):
TGTAGCGACGGAAAAATTTTACTTTGGTCACTAATTGAGGTGACTTATTAGAAATTTAAAAAACC
GACTTTCGGTTCTATTAAAAAAAGAGTCGCCACCGATCTTTTTTCTAGATGTGATCGGACACCTA
ATAAATCATCTTTTTTTGAAAAGAAAATTTATTCTTGAACAAAAATGAAGGCCAAATTTGGGTCT
ACGCGAAAATCCAGAGAAAAATAGGGTTCAAGAGTCGGTTACGTGCGAGGAAGGTATTAGCACCT
TCGCGACGCCCAAAATTGGTATCTTTATTAAACATGCGTCGTCTTGATTTAAAAAAATACGAGTT
CAATTTGACATTTACTCGTGATCCGTTCCTTGT
Found at i:18273266 original size:17 final size:18
Alignment explanation
Indices: 18273225--18273310 Score: 131
Period size: 18 Copynumber: 4.9 Consensus size: 18
18273215 NNNNNNNNNN
18273225 TATCATATCTAAGATTGC
1 TATCATATCTAAGATTGC
*
18273243 AATCATATCTAAGATTG-
1 TATCATATCTAAGATTGC
18273260 TATCATATCTAAGATTGC
1 TATCATATCTAAGATTGC
* *
18273278 AATCATATTTAAGATTG-
1 TATCATATCTAAGATTGC
18273295 TATCATATCTAAGATT
1 TATCATATCTAAGATT
18273311 ACATATCATT
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
17 30 0.49
18 31 0.51
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.40
Consensus pattern (18 bp):
TATCATATCTAAGATTGC
Found at i:18273271 original size:35 final size:35
Alignment explanation
Indices: 18273225--18273319 Score: 163
Period size: 35 Copynumber: 2.7 Consensus size: 35
18273215 NNNNNNNNNN
18273225 TATCATATCTAAGATTGCAATCATATCTAAGATTG
1 TATCATATCTAAGATTGCAATCATATCTAAGATTG
*
18273260 TATCATATCTAAGATTGCAATCATATTTAAGATTG
1 TATCATATCTAAGATTGCAATCATATCTAAGATTG
*
18273295 TATCATATCTAAGATTACATATCAT
1 TATCATATCTAAGATTGCA-ATCAT
18273320 TGAATATTAT
Statistics
Matches: 57, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
35 52 0.91
36 5 0.09
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.39
Consensus pattern (35 bp):
TATCATATCTAAGATTGCAATCATATCTAAGATTG
Found at i:18273914 original size:83 final size:83
Alignment explanation
Indices: 18273704--18273973 Score: 441
Period size: 83 Copynumber: 3.2 Consensus size: 83
18273694 TTCGATTTGT
* * *
18273704 AAGGATGTCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAATCATATCTGCAAGGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
*
18273769 CTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
* * *
18273787 AAGGATGCCTAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATGTCTACAGGGTCCTCG
1 AAGGATGCC-AAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCG
*
18273852 ATTTGTTCCTTGTAAGCAA
65 ATTTGTTCCTTGTAAGCAC
*
18273871 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
*
18273936 TTTGTTTCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
18273954 AAGGATGCCAAACCATCTTG
1 AAGGATGCCAAACCATCTTG
18273974 GATCTGCTTC
Statistics
Matches: 172, Mismatches: 14, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
83 96 0.56
84 76 0.44
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (83 bp):
AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
TTTGTTCCTTGTAAGCAC
Found at i:18274112 original size:119 final size:119
Alignment explanation
Indices: 18273897--18274490 Score: 981
Period size: 119 Copynumber: 5.0 Consensus size: 119
18273887 CTTGAGTCTG
* * * * * * *
18273897 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTTCTTGTAAGCACAAGGATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
*
18273962 CAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* * * *
18274016 TTTAAGAACGTCTGAGAGTCAAATCTGTTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
* *
18274081 CAAATCATCTTGGATCTGCTTTAGTATAAACATCTGAAGGTTAGATCTGTTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* * *
18274135 TTTGAGAACGTCTGAGAGTCAAATCTGCCATGTCCTTGATTTGTTCCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
*
18274200 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGTTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* *
18274254 TTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCAATTTGTTCCTTGTAAACACAAGAATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
*
18274319 CAAATCATCTTGGATCTACTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
*
18274373 TTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
*
18274438 CAAATCATCTTGGATCTGCTTCAGTATAAACATATGAAGGTTAGATCTGCTAT
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTAT
18274491 CTTCGATCTG
Statistics
Matches: 447, Mismatches: 28, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
119 447 1.00
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (119 bp):
TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
Found at i:18274533 original size:44 final size:44
Alignment explanation
Indices: 18274482--18274661 Score: 186
Period size: 44 Copynumber: 4.1 Consensus size: 44
18274472 TGAAGGTTAG
18274482 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
* * *
18274526 ATTTGCTATCTTC-AACTTGTTCCTTATAAACACAGGGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAACACAGGGATGCCAA
** * * * * * *
18274568 ATGCTGAAATCTTCAATCTGCTTCGCTATAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAACACAGGGATGCCAA
* * *
18274614 ATCTACTATCTTTGATCTGTTCCCTATAAACATAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
18274658 ATCT
1 ATCT
18274662 TGTTTCTTTG
Statistics
Matches: 107, Mismatches: 23, Indels: 12
0.75 0.16 0.08
Matches are distributed among these distances:
42 2 0.02
43 12 0.11
44 79 0.74
45 12 0.11
46 2 0.02
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
Found at i:18275548 original size:21 final size:21
Alignment explanation
Indices: 18275524--18275565 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
18275514 TCACCTTGGC
18275524 CTCTCCATTTTTTTCTTTTTT
1 CTCTCCATTTTTTTCTTTTTT
**
18275545 CTCTTTATTTTTTTCTTTTTT
1 CTCTCCATTTTTTTCTTTTTT
18275566 TTTGAAATAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.05, C:0.19, G:0.00, T:0.76
Consensus pattern (21 bp):
CTCTCCATTTTTTTCTTTTTT
Done.