Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 74 of 276
Found at i:22647623 original size:75 final size:74
Alignment explanation
Indices: 22647473--22647883 Score: 551
Period size: 75 Copynumber: 5.5 Consensus size: 74
22647463 CATGTGATCC
* * *
22647473 GAGGCTTC-ACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAA-ACAGAGATCGAAATTACCTC
1 GAGGC-TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAAATACCTC
* *
22647535 AGCGTGTCCT
65 AACGTGTCTT
*
22647545 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTATTTTGAAAGACAGAAATTGAAATTACCTC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTTTGAAAGACAGAAATTGAAAATACCTC
*
22647610 AGCGTGTCTT
65 AACGTGTCTT
22647620 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAAATACCTCA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAAATACCTCA
22647685 ACGTGTCTT
66 ACGTGTCTT
* * * *
22647694 GTGGCTCAACTCACTTCTTGCAGTATGAGTTGAATTTTTTTGAAAGACAGAAATTGAAAATACCT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTG-A-TTTTTTGAAAGACAGAAATTGAAAATACCT
22647759 CAACGTGTCTT
64 CAACGTGTCTT
* * * * *
22647770 GAGGCTCAACTCACTTATTGCAATATGAGTTGA-TTTTTGAAAGGCAGAAATTGAAAAAACCTCA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAAATACCTCA
* *
22647834 ACATGTCAGTC
66 ACGTGTC--TT
* * *
22647845 AAGGCTCAACTCACTTCTTGCAATATGAGTTGATTTTTT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
22647884 TGAACCGTAG
Statistics
Matches: 312, Mismatches: 18, Indels: 14
0.91 0.05 0.04
Matches are distributed among these distances:
71 2 0.01
72 30 0.10
73 36 0.12
74 73 0.23
75 96 0.31
76 75 0.24
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.31
Consensus pattern (74 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAAATACCTCA
ACGTGTCTT
Found at i:22647725 original size:149 final size:147
Alignment explanation
Indices: 22647473--22647887 Score: 582
Period size: 149 Copynumber: 2.8 Consensus size: 147
22647463 CATGTGATCC
* * *
22647473 GAGGCTTC-ACTCACCTCTCGCAATATGAGTTGATTTTTGAAA-ACAGAGATCGAAATTACCTCA
1 GAGGC-TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAGACAGAAATTGAAAATACCTCA
* * * * *
22647536 GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTATTTTGAAAGACAGAAATTGA
65 ACGTGT-CTGTGGCTCAACTCACTTCTTGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGA
* *
22647601 AATTACCTCAGCGTGTCTT
129 AAATACCTCAACGTGTCTT
22647620 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAAATACCTCA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAGACAGAAATTGAAAATACCTCA
*
22647685 ACGTGTCTTGTGGCTCAACTCACTTCTTGCAGTATGAGTTGAATTTTTTTGAAAGACAGAAATTG
65 ACGTGTC-TGTGGCTCAACTCACTTCTTGCAATATGAGTTG-ATTTTTTTGAAAGACAGAAATTG
22647750 AAAATACCTCAACGTGTCTT
128 AAAATACCTCAACGTGTCTT
* * * * *
22647770 GAGGCTCAACTCACTTATTGCAATATGAGTTGATTTTTGAAAGGCAGAAATTGAAAAAACCTCAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAGACAGAAATTGAAAATACCTCAA
* *
22647835 CATGTCAGTCAAGGCTCAACTCACTTCTTGCAATATGAGTTGATTTTTTTGAA
66 CGTGTCTGT---GGCTCAACTCACTTCTTGCAATATGAGTTGATTTTTTTGAA
22647888 CCGTAGAAAT
Statistics
Matches: 241, Mismatches: 19, Indels: 13
0.88 0.07 0.05
Matches are distributed among these distances:
146 2 0.01
147 30 0.12
148 12 0.05
149 87 0.36
150 81 0.34
151 29 0.12
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.31
Consensus pattern (147 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAGACAGAAATTGAAAATACCTCAA
CGTGTCTGTGGCTCAACTCACTTCTTGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAA
ATACCTCAACGTGTCTT
Found at i:22652215 original size:232 final size:231
Alignment explanation
Indices: 22651808--22652264 Score: 842
Period size: 232 Copynumber: 2.0 Consensus size: 231
22651798 GTACTTTGCT
* *
22651808 GTCTTTCTTTGGTACCGGGACTATGTTAGCCACCTATTCTGGATATTTGGAGGCTTGTAGGAAGT
1 GTCTTTCTTTGGTACCGGGACTATGTTAGCCACCCATTCTGGATATTTGGAGGCTTGTAGGAAGC
*
22651873 CAACATCAAATTGTTTCTTGACTTCCTCTTTTATCTTCAACAACATCTCAGGCCTCATCCGTCTT
66 CAACATCAAATTGCTTCTTGACTTCCTCTTTTATCTTCAACAACATCTCAGGCCTCATCCGTCTT
* *
22651938 AGTTTTTGTTGAATGGGCTTGCATTCTGGCTTTAATGGGAGCTTATGGACCGCTACATCTTCATC
131 AGTTTTTGTTGAATGGGCTTGCATTCTGGCTTTAATGGAAGCTTATGGACCACTACATCTTCATC
22652003 CAATCCTGGCATGTCCTGATATGACCATGCGAATNCC
196 CAATCCTGGCATGTCCTGATATGACCATGCGAAT-CC
22652040 GTCTTTCTTTGGTACCGGGACTATGTTAGCCACCCATTCTGGATATTTGGAGGCTTGTAGGAAGC
1 GTCTTTCTTTGGTACCGGGACTATGTTAGCCACCCATTCTGGATATTTGGAGGCTTGTAGGAAGC
*
22652105 CAGCATCAAATTGCTTCTTGACTTCCTCTTTTATCTTCAACAACATCTCAGGCCTCATCCGTCTT
66 CAACATCAAATTGCTTCTTGACTTCCTCTTTTATCTTCAACAACATCTCAGGCCTCATCCGTCTT
22652170 AGTTTTTGTTGAATGGGCTTGCATTCTGGCTTTAATGGAAGCTTATGGACCACTACATCTTCATC
131 AGTTTTTGTTGAATGGGCTTGCATTCTGGCTTTAATGGAAGCTTATGGACCACTACATCTTCATC
*
22652235 CAATCCTGGTATGTCCTGATATGACCATGC
196 CAATCCTGGCATGTCCTGATATGACCATGC
22652265 AAATACATCT
Statistics
Matches: 218, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
232 218 1.00
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.36
Consensus pattern (231 bp):
GTCTTTCTTTGGTACCGGGACTATGTTAGCCACCCATTCTGGATATTTGGAGGCTTGTAGGAAGC
CAACATCAAATTGCTTCTTGACTTCCTCTTTTATCTTCAACAACATCTCAGGCCTCATCCGTCTT
AGTTTTTGTTGAATGGGCTTGCATTCTGGCTTTAATGGAAGCTTATGGACCACTACATCTTCATC
CAATCCTGGCATGTCCTGATATGACCATGCGAATCC
Found at i:22660113 original size:16 final size:15
Alignment explanation
Indices: 22660087--22660121 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
22660077 TGATGTGAAT
22660087 AATATAAAATATTAA
1 AATATAAAATATTAA
*
22660102 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
22660118 AATA
1 AATA
22660122 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:22660293 original size:20 final size:20
Alignment explanation
Indices: 22660236--22660295 Score: 59
Period size: 23 Copynumber: 2.9 Consensus size: 20
22660226 AATACTACAT
22660236 AAATATGTACAT-ATATAAA
1 AAATATGTACATAATATAAA
** *
22660255 AAATAAATACGTGATAATATTAA
1 AAATATGTAC---ATAATATAAA
22660278 AAATATGTACATAATATA
1 AAATATGTACATAATATA
22660296 GTGTAAAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 2 0.06
23 14 0.45
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32
Consensus pattern (20 bp):
AAATATGTACATAATATAAA
Found at i:22660304 original size:25 final size:25
Alignment explanation
Indices: 22660249--22660421 Score: 124
Period size: 25 Copynumber: 7.0 Consensus size: 25
22660239 TATGTACATA
* * *
22660249 TATAAAAAATAAATACGTGATA-A-
1 TATAAAAAATATATACATAATATAG
* *
22660272 TATTAAAAATATGTACATAATATAG
1 TATAAAAAATATATACATAATATAG
* *
22660297 TGTAAAAAATACATACATAATATA-
1 TATAAAAAATATATACATAATATAG
* *
22660321 -AT-TAAAATATATACATAAAGTAACATG
1 TATAAAAAATATATACAT-AA-T-ATA-G
*
22660348 TA-AAAAAATATATAAATAATATAG
1 TATAAAAAATATATACATAATATAG
* * *
22660372 TATTAAAGATATATACATAAAATAG
1 TATAAAAAATATATACATAATATAG
* * *
22660397 TATAATATATATATACGTAATATAG
1 TATAAAAAATATATACATAATATAG
22660422 AATTTAGAAT
Statistics
Matches: 115, Mismatches: 25, Indels: 18
0.73 0.16 0.11
Matches are distributed among these distances:
22 12 0.10
23 20 0.17
24 5 0.04
25 62 0.54
26 1 0.01
27 2 0.02
28 13 0.11
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32
Consensus pattern (25 bp):
TATAAAAAATATATACATAATATAG
Found at i:22660325 original size:48 final size:48
Alignment explanation
Indices: 22660251--22660420 Score: 148
Period size: 50 Copynumber: 3.5 Consensus size: 48
22660241 TGTACATATA
* * * *
22660251 TAAAAAATAAATACGTGATA-ATATTAAAAATATGTACATAATATAGTG
1 TAAAAAATATATACATAATATATATTAAAAATATATACATAA-ATAGTG
* *
22660299 TAAAAAATACATACATAATATA-ATT-AAAATATATACATAAAGTAACATG
1 TAAAAAATATATACATAATATATATTAAAAATATATACATAAA-T-A-GTG
* * *
22660348 TAAAAAAATATATAAATAATATAGTATTAAAGATATATACATAAAATAGTA
1 T-AAAAAATATATACATAATATA-TATTAAAAATATATACAT-AAATAGTG
* * *
22660399 TAATATATATATACGTAATATA
1 TAAAAAATATATACATAATATA
22660421 GAATTTAGAA
Statistics
Matches: 99, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
46 1 0.01
47 15 0.15
48 21 0.21
49 4 0.04
50 36 0.36
51 2 0.02
52 4 0.04
53 13 0.13
54 3 0.03
ACGTcount: A:0.57, C:0.05, G:0.06, T:0.32
Consensus pattern (48 bp):
TAAAAAATATATACATAATATATATTAAAAATATATACATAAATAGTG
Found at i:22660484 original size:23 final size:25
Alignment explanation
Indices: 22660441--22660486 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
22660431 TATACCTAAT
22660441 ATATTAAAAGAATATATATAATATA
1 ATATTAAAAGAATATATATAATATA
*
22660466 ATATTAAGA-AATATA-ATAATA
1 ATATTAAAAGAATATATATAATA
22660487 ACAAAAAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATTAAAAGAATATATATAATATA
Found at i:22661410 original size:12 final size:13
Alignment explanation
Indices: 22661387--22661411 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22661377 AGCTAAGATA
22661387 AAATTAAAAAAAG
1 AAATTAAAAAAAG
22661400 AAATTAAAAAAA
1 AAATTAAAAAAA
22661412 CTTTCATATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (13 bp):
AAATTAAAAAAAG
Found at i:22664765 original size:37 final size:35
Alignment explanation
Indices: 22664697--22664765 Score: 86
Period size: 38 Copynumber: 1.9 Consensus size: 35
22664687 AATTAAATTT
*
22664697 ATATAATAAAAATTATTTTTAATTTTAATTATAAA
1 ATATAATAAAAATTATTTTTAATATTAATTATAAA
*
22664732 ATATCAATTAAAATATACTTTTTAATATT-ATTAT
1 ATAT-AATAAAAAT-TA-TTTTTAATATTAATTAT
22664766 TTTTTGAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
35 4 0.14
36 8 0.28
37 7 0.24
38 10 0.34
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (35 bp):
ATATAATAAAAATTATTTTTAATATTAATTATAAA
Found at i:22669578 original size:4 final size:4
Alignment explanation
Indices: 22669569--22669593 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
22669559 ATACTCCATG
22669569 ACAT ACAT ACAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT A
22669594 TAAAAAAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:22672437 original size:219 final size:219
Alignment explanation
Indices: 22672058--22672503 Score: 874
Period size: 219 Copynumber: 2.0 Consensus size: 219
22672048 CCCCCCCCCC
*
22672058 TTTTTTTTTTTTTTTTTTTTTTTTAGCTTTTCTTATAAAAAATCCTTTTGAAAGGATCTTAATTA
1 TTTTTTTTTTTTTTTTCTTTTTTTAGCTTTTCTTATAAAAAATCCTTTTGAAAGGATCTTAATTA
22672123 TGCTTCTCAAGAGAAAATAACAGGAGAAATTTTGGTATGAGTTATGAAAGAAAAAATTATTTAAC
66 TGCTTCTCAAGAGAAAATAACAGGAGAAATTTTGGTATGAGTTATGAAAGAAAAAATTATTTAAC
22672188 TAATATTAAATTGGGTTGAAATTTGCTTTAAATTTATTCCTATAGAAAATTTTAAACTAATAATA
131 TAATATTAAATTGGGTTGAAATTTGCTTTAAATTTATTCCTATAGAAAATTTTAAACTAATAATA
22672253 AAAATGGTTATGAAAGAAAATATA
196 AAAATGGTTATGAAAGAAAATATA
22672277 TTTTTTTTTTTTTTTTCTTTTTTTAGCTTTTCTTATAAAAAATCCTTTTGAAAGGATCTTAATTA
1 TTTTTTTTTTTTTTTTCTTTTTTTAGCTTTTCTTATAAAAAATCCTTTTGAAAGGATCTTAATTA
22672342 TGCTTCTCAAGAGAAAATAACAGGAGAAATTTTGGTATGAGTTATGAAAGAAAAAATTATTTAAC
66 TGCTTCTCAAGAGAAAATAACAGGAGAAATTTTGGTATGAGTTATGAAAGAAAAAATTATTTAAC
22672407 TAATATTAAATTGGGTTGAAATTTGCTTTAAATTTATTCCTATAGAAAATTTTAAACTAATAATA
131 TAATATTAAATTGGGTTGAAATTTGCTTTAAATTTATTCCTATAGAAAATTTTAAACTAATAATA
22672472 AAAATGGTTATGAAAGAAAATATA
196 AAAATGGTTATGAAAGAAAATATA
*
22672496 TATTTTTT
1 TTTTTTTT
22672504 AAATTAATAT
Statistics
Matches: 225, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
219 225 1.00
ACGTcount: A:0.38, C:0.07, G:0.12, T:0.43
Consensus pattern (219 bp):
TTTTTTTTTTTTTTTTCTTTTTTTAGCTTTTCTTATAAAAAATCCTTTTGAAAGGATCTTAATTA
TGCTTCTCAAGAGAAAATAACAGGAGAAATTTTGGTATGAGTTATGAAAGAAAAAATTATTTAAC
TAATATTAAATTGGGTTGAAATTTGCTTTAAATTTATTCCTATAGAAAATTTTAAACTAATAATA
AAAATGGTTATGAAAGAAAATATA
Found at i:22678269 original size:26 final size:26
Alignment explanation
Indices: 22678240--22678291 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
22678230 AGAGCTAACT
22678240 TCGGATCTCTTGTAATCAACAAATTC
1 TCGGATCTCTTGTAATCAACAAATTC
22678266 TCGGATCTCTTGTAATCAACAAATTC
1 TCGGATCTCTTGTAATCAACAAATTC
22678292 ACTATCTCCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.35
Consensus pattern (26 bp):
TCGGATCTCTTGTAATCAACAAATTC
Found at i:22679897 original size:28 final size:28
Alignment explanation
Indices: 22679866--22679924 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
22679856 ATATATATAT
*
22679866 ATATATAAATAAA-AGTTTAAGATAAGGA
1 ATATATAAA-AAATAGTTTAAAATAAGGA
* *
22679894 ATATATAAAAAATATTTTAAAATAAGTA
1 ATATATAAAAAATAGTTTAAAATAAGGA
22679922 ATA
1 ATA
22679925 CATGTAGAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 3 0.11
28 24 0.89
ACGTcount: A:0.59, C:0.00, G:0.08, T:0.32
Consensus pattern (28 bp):
ATATATAAAAAATAGTTTAAAATAAGGA
Found at i:22685437 original size:26 final size:26
Alignment explanation
Indices: 22685408--22685458 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
22685398 AAATCAAATA
* *
22685408 GTTTAAAATAAATAATATTTAAAAGG
1 GTTTAAAATAAATAACATGTAAAAGG
*
22685434 GTTTAAGATAAATAACATGTAAAAG
1 GTTTAAAATAAATAACATGTAAAAG
22685459 AGAAATTTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.53, C:0.02, G:0.14, T:0.31
Consensus pattern (26 bp):
GTTTAAAATAAATAACATGTAAAAGG
Found at i:22685592 original size:30 final size:29
Alignment explanation
Indices: 22685540--22685605 Score: 71
Period size: 30 Copynumber: 2.2 Consensus size: 29
22685530 GGATAATAAA
* *
22685540 TAAAATATATTAAAATAAATAAATAGAGTT
1 TAAAATATATTAAAATAAATAAA-ACAATT
* *
22685570 TAAAATATA-TATATATATATAAAACAATT
1 TAAAATATATTA-AAATAAATAAAACAATT
22685599 TAAAATA
1 TAAAATA
22685606 AATAGTTTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
29 13 0.42
30 18 0.58
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.35
Consensus pattern (29 bp):
TAAAATATATTAAAATAAATAAAACAATT
Found at i:22685736 original size:38 final size:36
Alignment explanation
Indices: 22685676--22685754 Score: 97
Period size: 36 Copynumber: 2.1 Consensus size: 36
22685666 AAAGGTCTAC
*
22685676 ATATAAATATTATACATATAAAAATATTTAAAATAGATA
1 ATATAAATAGTATACATAT-AAAA-ATTTAAAATA-ATA
* *
22685715 ATATAAAT-GTATACATGTAAAAGTTTAAAATAATA
1 ATATAAATAGTATACATATAAAAATTTAAAATAATA
22685750 ATATA
1 ATATA
22685755 CAAAACTTAC
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
35 8 0.22
36 9 0.24
37 4 0.11
38 8 0.22
39 8 0.22
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.35
Consensus pattern (36 bp):
ATATAAATAGTATACATATAAAAATTTAAAATAATA
Found at i:22685791 original size:20 final size:20
Alignment explanation
Indices: 22685739--22685798 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 20
22685729 ATGTAAAAGT
* *
22685739 TTAAAATAATAATATACAAAAC
1 TTAAAAAAATAAT-TA-AAAAA
*
22685761 TTACAACAAATAATTAAAAAA
1 TTA-AAAAAATAATTAAAAAA
*
22685782 TTAAAAAAATAAATAAA
1 TTAAAAAAATAATTAAA
22685799 TATGTATATA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
20 12 0.38
21 7 0.22
22 5 0.16
23 8 0.25
ACGTcount: A:0.68, C:0.07, G:0.00, T:0.25
Consensus pattern (20 bp):
TTAAAAAAATAATTAAAAAA
Found at i:22685921 original size:19 final size:18
Alignment explanation
Indices: 22685869--22685924 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 18
22685859 AAAACAATTC
*
22685869 AATACAAAAGTTTAAAATA
1 AATAAAAAAGTTT-AAATA
* *
22685888 AATAAAATGATTTTAAATA
1 AATAAAA-AAGTTTAAATA
22685907 AATAGAAAAAGTTTAAAT
1 AATA-AAAAAGTTTAAAT
22685925 TCACACCAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
19 23 0.77
20 7 0.23
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.30
Consensus pattern (18 bp):
AATAAAAAAGTTTAAATA
Found at i:22688654 original size:13 final size:13
Alignment explanation
Indices: 22688636--22688661 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
22688626 AAAAGTTAAA
22688636 ATTATGGATTGGT
1 ATTATGGATTGGT
22688649 ATTATGGATTGGT
1 ATTATGGATTGGT
22688662 CCCTAAAGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.00, G:0.31, T:0.46
Consensus pattern (13 bp):
ATTATGGATTGGT
Found at i:22689302 original size:27 final size:27
Alignment explanation
Indices: 22689271--22689325 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
22689261 TTTTACTAAA
*
22689271 ATTCCATTCGGAGAAACAACATGAATG
1 ATTCCATTAGGAGAAACAACATGAATG
22689298 ATTCCATTAGGAGAAACAACATGAATG
1 ATTCCATTAGGAGAAACAACATGAATG
22689325 A
1 A
22689326 AATTAAAAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.44, C:0.16, G:0.18, T:0.22
Consensus pattern (27 bp):
ATTCCATTAGGAGAAACAACATGAATG
Found at i:22691527 original size:12 final size:12
Alignment explanation
Indices: 22691512--22691623 Score: 51
Period size: 12 Copynumber: 9.3 Consensus size: 12
22691502 TTTTCACCCA
22691512 TATTATATTTAT
1 TATTATATTTAT
22691524 TATTA-A--TAT
1 TATTATATTTAT
*
22691533 TAGTATATATT-T
1 TATTATAT-TTAT
*
22691545 TATTATACGTGTA-
1 TATTATA--TTTAT
22691558 TATATATACTTT-T
1 TAT-TATA-TTTAT
22691571 TATATATAGTATTAT
1 TAT-TATA-T-TTAT
*
22691586 T-TT-TATATAT
1 TATTATATTTAT
*
22691596 CATTATATTTAT
1 TATTATATTTAT
*
22691608 TATTATACTTAT
1 TATTATATTTAT
22691620 TATT
1 TATT
22691624 TTCACTATTG
Statistics
Matches: 76, Mismatches: 11, Indels: 26
0.67 0.10 0.23
Matches are distributed among these distances:
9 7 0.09
10 4 0.05
11 4 0.05
12 34 0.45
13 17 0.22
14 8 0.11
15 2 0.03
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.59
Consensus pattern (12 bp):
TATTATATTTAT
Found at i:22691590 original size:18 final size:18
Alignment explanation
Indices: 22691567--22691625 Score: 68
Period size: 18 Copynumber: 3.2 Consensus size: 18
22691557 ATATATATAC
*
22691567 TTTTTATATATAGTATTA
1 TTTTTATATATATTATTA
22691585 TTTTTATATATCATTA-TA
1 TTTTTATATAT-ATTATTA
22691603 TTTATTAT-TATACTTATTA
1 TTT-TTATATATA-TTATTA
22691622 TTTT
1 TTTT
22691626 CACTATTGTT
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
17 1 0.03
18 23 0.64
19 12 0.33
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (18 bp):
TTTTTATATATATTATTA
Found at i:22691612 original size:3 final size:3
Alignment explanation
Indices: 22691580--22691671 Score: 50
Period size: 3 Copynumber: 30.3 Consensus size: 3
22691570 TTATATATAG
* *
22691580 TAT TAT TTT TAT ATAT CAT TA- TATT TAT TAT TA- TACT TAT TAT T-T
1 TAT TAT TAT TAT -TAT TAT TAT TA-T TAT TAT TAT TA-T TAT TAT TAT
* * *
22691625 TCAC TAT TGT TACT TAT TAT T-T TAT T-T TAA TAT TAT TAT GTAT TAT
1 T-AT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT
22691671 T
1 T
22691672 TGGTATACAT
Statistics
Matches: 68, Mismatches: 10, Indels: 22
0.68 0.10 0.22
Matches are distributed among these distances:
2 10 0.15
3 44 0.65
4 14 0.21
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:22693190 original size:15 final size:15
Alignment explanation
Indices: 22693143--22693190 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
22693133 TTTTTTGAAC
* *
22693143 AAAAAAATGAAAATA
1 AAAAAAAAGGAAATA
*
22693158 AAAAATAAA-GAAACA
1 AAAAA-AAAGGAAATA
22693173 AAAAAAAAGGAAATA
1 AAAAAAAAGGAAATA
22693188 AAA
1 AAA
22693191 TTCAACCTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
14 3 0.11
15 22 0.81
16 2 0.07
ACGTcount: A:0.81, C:0.02, G:0.08, T:0.08
Consensus pattern (15 bp):
AAAAAAAAGGAAATA
Found at i:22693625 original size:23 final size:21
Alignment explanation
Indices: 22693573--22693630 Score: 71
Period size: 23 Copynumber: 2.6 Consensus size: 21
22693563 GGGTTTGTAA
* *
22693573 ATTGGGCTCAGGTAGTTTTAGG
1 ATTGGGCT-AGGTTGGTTTAGG
22693595 ATTGGGCTAGGTTGGTTTAGGG
1 ATTGGGCTAGGTTGGTTTA-GG
22693617 TATTGGGCTAGGTT
1 -ATTGGGCTAGGTT
22693631 AGTTGGGTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
21 9 0.28
22 10 0.31
23 13 0.41
ACGTcount: A:0.16, C:0.07, G:0.40, T:0.38
Consensus pattern (21 bp):
ATTGGGCTAGGTTGGTTTAGG
Found at i:22696979 original size:15 final size:15
Alignment explanation
Indices: 22696932--22696979 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
22696922 TTTTTTGAAC
* *
22696932 AAAAAAATGAAAATA
1 AAAAAAAAGGAAATA
*
22696947 AAAAATAAA-GAAACA
1 AAAAA-AAAGGAAATA
22696962 AAAAAAAAGGAAATA
1 AAAAAAAAGGAAATA
22696977 AAA
1 AAA
22696980 TTCAACCTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
14 3 0.11
15 22 0.81
16 2 0.07
ACGTcount: A:0.81, C:0.02, G:0.08, T:0.08
Consensus pattern (15 bp):
AAAAAAAAGGAAATA
Found at i:22697414 original size:23 final size:21
Alignment explanation
Indices: 22697362--22697423 Score: 72
Period size: 23 Copynumber: 2.8 Consensus size: 21
22697352 GGGTTTGTAA
22697362 ATTGGGCTCAGG-TAGTTTTAGG
1 ATTGGGCT-AGGTTAG-TTTAGG
22697384 ATTGGGCTAGGTTAGTTTAGGG
1 ATTGGGCTAGGTTAGTTTA-GG
*
22697406 TATTGGGCTAGATTAGTT
1 -ATTGGGCTAGGTTAGTT
22697424 GGGTCAATCG
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
21 7 0.19
22 13 0.36
23 16 0.44
ACGTcount: A:0.19, C:0.06, G:0.35, T:0.39
Consensus pattern (21 bp):
ATTGGGCTAGGTTAGTTTAGG
Found at i:22698380 original size:219 final size:205
Alignment explanation
Indices: 22698113--22698602 Score: 599
Period size: 219 Copynumber: 2.4 Consensus size: 205
22698103 TTTTTTTGAC
* *
22698113 AACAGAAATTGAAATTACCTCAGCGTGTTCTGAGGTTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAAAAATTGAAATTACCTCAGCGTGTTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
22698178 TTTGAAAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTTTTGAAAA
66 TTTGAAAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTTTT-----
* *
22698243 CAGAATTTGCCAAA-CAGATTTTGAAAATACCTCGGCATGTGACCCGAGGTTCAACTCACCTCTC
126 -----TTTG--AAAGCAGAATTTGAAAATACCTCGGC--GTGACCCGAGGCTCAACTCACCTCTC
22698307 GCAATATGAGTTGA-AACT-AAAA
182 GCAATATGAGTTGATAACTGAAAA
* ** * *
22698329 CACACAAAAAATTGAAAATACCTCAGCGTGCCCCT-AGGCTCAACTCACCTCTAGCAATATGAGC
1 -A-AC-AAAAATTGAAATTACCTCAGCGTG-TTCTGAGGCTCAACTCACCTCTCGCAATATGAGT
22698393 TGATTTTG---AAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTTTTT
62 TGATTTTGAAAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTTTTT
* *
22698455 TTGAAAGTAGAATTTGAAAATACCTCGGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAG
127 TTGAAAGCAGAATTTGAAAATACCTCGGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
***
22698520 TTGATTTTTGAAAA
192 TTGATAACTGAAAA
*
22698534 AACAGAAATTGAAATTACCTCAGCGTGTTCTGAGGCTC-A---A-CTCTCGCAATATGAGTTGAT
1 AACAAAAATTGAAATTACCTCAGCGTGTTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
22698594 TTTGAAAAA
66 TTTGAAAAA
22698603 CAAAAATTGA
Statistics
Matches: 243, Mismatches: 20, Indels: 37
0.81 0.07 0.12
Matches are distributed among these distances:
197 22 0.09
198 1 0.00
200 2 0.01
201 3 0.01
202 28 0.12
203 40 0.16
204 5 0.02
205 24 0.10
206 4 0.02
216 53 0.22
217 1 0.00
218 2 0.01
219 56 0.23
220 2 0.01
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (205 bp):
AACAAAAATTGAAATTACCTCAGCGTGTTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTGAAAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTTTTTTTGA
AAGCAGAATTTGAAAATACCTCGGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TAACTGAAAA
Found at i:22698702 original size:73 final size:72
Alignment explanation
Indices: 22698468--22698747 Score: 336
Period size: 73 Copynumber: 3.9 Consensus size: 72
22698458 AAAGTAGAAT
* * * * ** *
22698468 TTGAAAATACCTCGGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
1 TTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTG-AA
*
22698533 AAACAGAAA
64 AAACAAAAA
* *
22698542 TTGAAATTACCTCAGCGTGTTCTGAGGCTCAA--C---TCTCGCAATATGAGTTGATTTTGAAAA
1 TTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTGAAAA
22698602 ACAAAAA
66 ACAAAAA
* * *
22698609 TTGAAATTACCTCAGCGTGTCCTGAGGCTCAACCCATTTCTCGCAACATGAGTTGAAATTTGGAA
1 TTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTG-AATTTGAAA
22698674 AACAAAAA
65 AACAAAAA
* ** *
22698682 TTGAAATTATCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAA
1 TTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA-TTTGAAA
22698747 A
65 A
22698748 GATATGAGTT
Statistics
Matches: 182, Mismatches: 17, Indels: 15
0.85 0.08 0.07
Matches are distributed among these distances:
67 41 0.23
68 5 0.03
69 19 0.10
72 19 0.10
73 71 0.39
74 27 0.15
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (72 bp):
TTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTGAAAA
ACAAAAA
Found at i:22698752 original size:22 final size:22
Alignment explanation
Indices: 22698727--22698769 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
22698717 ATTTCTCGCA
22698727 ATATGAGTTGAATTTTGAAAAG
1 ATATGAGTTGAATTTTGAAAAG
*
22698749 ATATGAGTTGATTTTTGAAAA
1 ATATGAGTTGAATTTTGAAAA
22698770 AACAGAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.21, T:0.40
Consensus pattern (22 bp):
ATATGAGTTGAATTTTGAAAAG
Found at i:22699212 original size:145 final size:144
Alignment explanation
Indices: 22698749--22699701 Score: 1337
Period size: 145 Copynumber: 6.6 Consensus size: 144
22698739 TTTTGAAAAG
* * *
22698749 ATATGAGTTGATTTTTGAAAAAACAGAAATTGAAATTACCTCAGCGTGTTCTGAGGTTCAACTCA
1 ATATGAGTTGA-TTTTG-AAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCA
** ** * * *
22698814 CCTCTCGCAATATGAGTTGATTTTTGAAAAAACAGAAATTGAAATTACCTCAGCGTGTTCTGAGG
64 TTTCTCGCAATATGAGTTGAAATTTG-GAAAACAAAAATTGAAATTACCTCAACGTG-TCTGAGG
* **
22698879 TTCAACTCACCTCTCGCA
127 CTCAACTCATTTCTCGCA
* * *
22698897 ATATGAGTTGATTTTTGAAAAAACAGAAATTGAAATTACCTCAGCGTGTTCTGAGGTTCAACTCA
1 ATATGAGTTGA-TTTTG-AAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCA
** ** * * *
22698962 CCTCTCGCAATATGAGTTGATTTTTGAAAAAACAGAAATTGAAATTACCTCAGCGTGTTCTGAGG
64 TTTCTCGCAATATGAGTTGAAATTTG-GAAAACAAAAATTGAAATTACCTCAACGTG-TCTGAGG
22699027 CTCAA--C---TCTCGCA
127 CTCAACTCATTTCTCGCA
*
22699040 ATATGAGTTGATTTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACCCATT
1 ATATGAGTTGATTTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATT
* **
22699105 TCTCGCAACATGAGTTGAAATTTGGAAAACAAAAATTGAAATTACCTCAATTTGTCTAGAGGCTC
66 TCTCGCAATATGAGTTGAAATTTGGAAAACAAAAATTGAAATTACCTCAACGTGTCT-GAGGCTC
22699170 AACTCATTTCTCGCA
130 AACTCATTTCTCGCA
*
22699185 ATATGAGTTGATTTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACCCATT
1 ATATGAGTTGATTTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATT
* **
22699250 TCTCGCAACATGAGTTGAAATTTGGAAAACAAAAATTGAAATTACCTCAATTTGTCTAGAGGCTC
66 TCTCGCAATATGAGTTGAAATTTGGAAAACAAAAATTGAAATTACCTCAACGTGTCT-GAGGCTC
22699315 AACTCATTTCTCGCA
130 AACTCATTTCTCGCA
*
22699330 ATATGAGTTGATTTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACCCATT
1 ATATGAGTTGATTTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATT
* **
22699395 TCTCGCAACATGAGTTGAAATTTGGAAAACAAAAATTGAAATTACCTCAATTTGTCTTGAGGCTC
66 TCTCGCAATATGAGTTGAAATTTGGAAAACAAAAATTGAAATTACCTCAACGTGTC-TGAGGCTC
22699460 AACTCATTTCTCGCA
130 AACTCATTTCTCGCA
* * *
22699475 ATATGAGTTGAATTTTG-AAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAT
1 ATATGAGTTG-ATTTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCAT
* *
22699539 TTCTCGCAATATGAGTTG-AATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCT
65 TTCTCGCAATATGAGTTGAAATTTGGAAAACAAAAATTGAAATTACCTCAACGTGTC-TGAGGCT
22699603 CAACTCATTTCTCGCA
129 CAACTCATTTCTCGCA
* * *
22699619 ATATGAGTTGAATTTTG-AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCAT
1 ATATGAGTTG-ATTTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCAT
22699683 TTCTCGCAATATGAGTTGA
65 TTCTCGCAATATGAGTTGA
22699702 TTTTCCTTGG
Statistics
Matches: 770, Mismatches: 26, Indels: 21
0.94 0.03 0.03
Matches are distributed among these distances:
139 3 0.00
140 34 0.04
141 64 0.08
142 6 0.01
143 18 0.02
144 138 0.18
145 365 0.47
146 8 0.01
148 134 0.17
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.31
Consensus pattern (144 bp):
ATATGAGTTGATTTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATT
TCTCGCAATATGAGTTGAAATTTGGAAAACAAAAATTGAAATTACCTCAACGTGTCTGAGGCTCA
ACTCATTTCTCGCA
Found at i:22699241 original size:72 final size:72
Alignment explanation
Indices: 22698749--22699705 Score: 1268
Period size: 72 Copynumber: 13.2 Consensus size: 72
22698739 TTTTGAAAAG
* * *
22698749 ATATGAGTTGATTTTTGAAAAAACAGAAATTGAAATTACCTCAGCGTGTTCTGAGGTTCAACTCA
1 ATATGAGTTGA-TTTTG-AAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCA
**
22698814 CCTCTCGCA
64 TTTCTCGCA
* * *
22698823 ATATGAGTTGATTTTTGAAAAAACAGAAATTGAAATTACCTCAGCGTGTTCTGAGGTTCAACTCA
1 ATATGAGTTGA-TTTTG-AAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCA
**
22698888 CCTCTCGCA
64 TTTCTCGCA
* * *
22698897 ATATGAGTTGATTTTTGAAAAAACAGAAATTGAAATTACCTCAGCGTGTTCTGAGGTTCAACTCA
1 ATATGAGTTGA-TTTTG-AAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCA
**
22698962 CCTCTCGCA
64 TTTCTCGCA
* *
22698971 ATATGAGTTGATTTTTGAAAAAACAGAAATTGAAATTACCTCAGCGTGTTCTGAGGCTCAA--C-
1 ATATGAGTTGA-TTTTG-AAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCA
22699033 --TCTCGCA
64 TTTCTCGCA
*
22699040 ATATGAGTTGATTTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACCCATT
1 ATATGAGTTGATTTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATT
22699105 TCTCGCA
66 TCTCGCA
* * * ***
22699112 ACATGAGTTGAAATTTGGAAAACAAAAATTGAAATTACCTCAATTTGT-CTAGAGGCTCAACTCA
1 ATATGAGTTG-ATTTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCT-GAGGCTCAACTCA
22699176 TTTCTCGCA
64 TTTCTCGCA
*
22699185 ATATGAGTTGATTTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACCCATT
1 ATATGAGTTGATTTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATT
22699250 TCTCGCA
66 TCTCGCA
* * * ***
22699257 ACATGAGTTGAAATTTGGAAAACAAAAATTGAAATTACCTCAATTTGT-CTAGAGGCTCAACTCA
1 ATATGAGTTG-ATTTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCT-GAGGCTCAACTCA
22699321 TTTCTCGCA
64 TTTCTCGCA
*
22699330 ATATGAGTTGATTTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACCCATT
1 ATATGAGTTGATTTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATT
22699395 TCTCGCA
66 TCTCGCA
* * * *** *
22699402 ACATGAGTTGAAATTTGGAAAACAAAAATTGAAATTACCTCAATTTGTCTTGAGGCTCAACTCAT
1 ATATGAGTTG-ATTTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCAT
22699467 TTCTCGCA
65 TTCTCGCA
* * *
22699475 ATATGAGTTGAATTTTG-AAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAT
1 ATATGAGTTG-ATTTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCAT
22699539 TTCTCGCA
65 TTCTCGCA
* * *
22699547 ATATGAGTTGAATTTTG-AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCAT
1 ATATGAGTTG-ATTTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCAT
22699611 TTCTCGCA
65 TTCTCGCA
* * *
22699619 ATATGAGTTGAATTTTG-AAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCAT
1 ATATGAGTTG-ATTTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCAT
22699683 TTCTCGCA
65 TTCTCGCA
22699691 ATATGAGTTGATTTT
1 ATATGAGTTGATTTT
22699706 CCTTGGAAAG
Statistics
Matches: 825, Mismatches: 46, Indels: 27
0.92 0.05 0.03
Matches are distributed among these distances:
67 41 0.05
68 5 0.01
69 19 0.02
71 5 0.01
72 349 0.42
73 198 0.24
74 208 0.25
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (72 bp):
ATATGAGTTGATTTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATT
TCTCGCA
Found at i:22713064 original size:21 final size:23
Alignment explanation
Indices: 22713038--22713098 Score: 83
Period size: 23 Copynumber: 2.7 Consensus size: 23
22713028 GGGTTTGTAA
22713038 ATTGGGCTCAGG-TAGTTTA-GG-
1 ATTGGGCT-AGGTTAGTTTAGGGT
*
22713059 ATTGGGCTAGGTTGGTTTAGGGT
1 ATTGGGCTAGGTTAGTTTAGGGT
22713082 ATTGGGCTAGGTTAGTT
1 ATTGGGCTAGGTTAGTT
22713099 GGGTCAATCG
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.09
21 14 0.40
22 2 0.06
23 16 0.46
ACGTcount: A:0.16, C:0.07, G:0.39, T:0.38
Consensus pattern (23 bp):
ATTGGGCTAGGTTAGTTTAGGGT
Found at i:22722750 original size:28 final size:28
Alignment explanation
Indices: 22722691--22722750 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
22722681 TATAGATACA
* * *
22722691 TAAATATATAAAAATTTAGAACACAAAT
1 TAAATATATAAAAATTTAAAACAAAAAC
* * *
22722719 TAAATTTATTAAAATTTAAAATAAAAAC
1 TAAATATATAAAAATTTAAAACAAAAAC
22722747 TAAA
1 TAAA
22722751 AGTTGCTTTA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.32
Consensus pattern (28 bp):
TAAATATATAAAAATTTAAAACAAAAAC
Found at i:22723585 original size:19 final size:20
Alignment explanation
Indices: 22723515--22723583 Score: 61
Period size: 19 Copynumber: 3.3 Consensus size: 20
22723505 ATAAAAATTA
22723515 ATAAAATATTTG-AAAGTTT
1 ATAAAATATTTGAAAAGTTT
* *
22723534 AAAAAATATTTAAAAAGTTATT
1 ATAAAATATTTGAAAAG-T-TT
22723556 CATTCAAAA-ATTTGAAAAGTTT
1 -A-T-AAAATATTTGAAAAGTTT
22723578 ATAAAA
1 ATAAAA
22723584 ATCTAAAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
19 14 0.35
20 5 0.12
21 2 0.05
22 4 0.10
23 2 0.05
24 9 0.22
25 4 0.10
ACGTcount: A:0.54, C:0.03, G:0.07, T:0.36
Consensus pattern (20 bp):
ATAAAATATTTGAAAAGTTT
Found at i:22727486 original size:17 final size:17
Alignment explanation
Indices: 22727466--22727498 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
22727456 ATTTGAAATA
22727466 TTATTAAATTATATTTT
1 TTATTAAATTATATTTT
22727483 TTATTAAATTATATTT
1 TTATTAAATTATATTT
22727499 AATAATAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TTATTAAATTATATTTT
Found at i:22727497 original size:27 final size:27
Alignment explanation
Indices: 22727461--22727536 Score: 75
Period size: 27 Copynumber: 2.8 Consensus size: 27
22727451 AAAAAATTTG
*
22727461 AAATATTATTAAATTATATTTTTTATTA
1 AAATA-TATTAAATTATATTTTATATTA
* * * *
22727489 AATTATATTTAATAATA-ATTATATTA
1 AAATATATTAAATTATATTTTATATTA
22727515 AAATATGATTAAATTAT-TTTTA
1 AAATAT-ATTAAATTATATTTTA
22727537 AAAATAATCC
Statistics
Matches: 37, Mismatches: 9, Indels: 5
0.73 0.18 0.10
Matches are distributed among these distances:
26 12 0.32
27 21 0.57
28 4 0.11
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (27 bp):
AAATATATTAAATTATATTTTATATTA
Found at i:22727530 original size:37 final size:37
Alignment explanation
Indices: 22727485--22727555 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 37
22727475 TATATTTTTT
* *
22727485 ATTAAATTATATTTAATAATAATTATATTAAAATATG
1 ATTAAATTATATTTAAAAATAATCATATTAAAATATG
* *
22727522 ATTAAATTATTTTTAAAAATAATCCTATTAAAAT
1 ATTAAATTATATTTAAAAATAATCATATTAAAAT
22727556 TTAATAACAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (37 bp):
ATTAAATTATATTTAAAAATAATCATATTAAAATATG
Found at i:22728273 original size:16 final size:16
Alignment explanation
Indices: 22728252--22728299 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 16
22728242 TTTTTGTATG
* *
22728252 ATATAAATTACATAAT
1 ATATAAATTAAAAAAT
*
22728268 ATATAAAATAAAAAAT
1 ATATAAATTAAAAAAT
* *
22728284 ATATATATTATAAAAT
1 ATATAAATTAAAAAAT
22728300 TTAAAAAAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (16 bp):
ATATAAATTAAAAAAT
Found at i:22743237 original size:76 final size:76
Alignment explanation
Indices: 22743132--22743423 Score: 417
Period size: 76 Copynumber: 3.8 Consensus size: 76
22743122 ACTGTTTGTC
* * * *
22743132 AAAAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTCGGGGCATGCTGAGGTATTTTCAATTAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTAT
22743197 TGTTTGTAAAA
66 TGTTTGTAAAA
* * * * * *
22743208 AAAAATCAACTCATATTGCGGGAGGTGAGTTGAACCTCGGGGCACGCTAAGGTATTTTCGATTAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTAT
*
22743273 TGTTTGT-CAA
66 TGTTTGTAAAA
22743283 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATT-T
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTAT
**
22743347 CTGTCCTTCAAAAA
66 -TGT--TTGTAAAA
*
22743361 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATT
22743424 GATGTTTTTT
Statistics
Matches: 197, Mismatches: 15, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
74 1 0.01
75 62 0.31
76 68 0.35
77 2 0.01
78 64 0.32
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.29
Consensus pattern (76 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTAT
TGTTTGTAAAA
Found at i:22743699 original size:88 final size:87
Alignment explanation
Indices: 22743361--22744369 Score: 1109
Period size: 88 Copynumber: 11.4 Consensus size: 87
22743351 CCTTCAAAAA
* * **
22743361 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTGA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
* *
22743426 TGTTTTTTCAATTTACGCTTTTC
66 TG-TTTTTCAATTTATGTTTTTC
* *
22743449 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTC-GGGTCATACGCTGAGGTATTTTCCAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGG-C--ACGCTGAGGTATTTTCAAT
* * ***
22743513 TTCTGTTCTTT-AATTTCTACGGTTCAA
63 TTCTGTT-TTTCAA-TT-TATGTTTTTC
* * * * * **
22743540 AAAAATTAGCTCATATTGCGAGAGGTGAGTTGAGCCTTGACTGACACGCTGAGGTATTTTTGATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCA-GGGCACGCTGAGGTATTTTCAATT
*
22743605 TCCGTTTTTCAATTTATGTTTTTC
64 TCTGTTTTTCAATTTATGTTTTTC
**
22743629 AAAAATCAACTCATAATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTTGATTT
1 AAAAATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
*
22743694 CCGTTTTTCAATTTATGTTTTTC
65 CTGTTTTTCAATTTATGTTTTTC
*
22743717 AAAAATCAACTCATAATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTTAATTT
1 AAAAATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
* * * *
22743782 CTG-CTTTCTGATTTCTGCTTTTC
65 CTGTTTTTC-AATTTATGTTTTTC
* * **
22743805 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAAGCTGAGGTATTTTTTATT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATT
22743870 TCTGTTTTTCAATTTATGTTTTTC
64 TCTGTTTTTCAATTTATGTTTTTC
22743894 AAAAATCAACTCATAATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 AAAAATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
* * *
22743959 CTG-CTTTCTGATTT-TTTCTTTTC
65 CTGTTTTTC-AATTTATGT-TTTTC
* * * *
22743982 AAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTAGGACACGCTGAGGTATTTTCGATT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATT
*
22744047 TCCGTTTTTCAATTTATGTTTTTC
64 TCTGTTTTTCAATTTATGTTTTTC
* * * **
22744071 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGTTATTCTCAATTAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
*
22744136 TGTTTTTCAATTTATGCTTTTC
66 TGTTTTTCAATTTATGTTTTTC
* * *
22744158 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTC-GGGTCACATGCCGAGGTATTTTCAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGG-CAC--GCTGAGGTATTTTCAAT
* * * *
22744222 ATCTGTTTTGCAAATTCTG-TTTTC
63 TTCTGTTTTTCAATTTATGTTTTTC
** ** ** *
22744246 AAAAATCAACTCATATTGCGAGAATTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC--GCTGAGGTATTTTCAATT
* * *
22744311 TCTATTTTTTATGTTTA-GTTTTT-
64 TCTGTTTTTCA-ATTTATGTTTTTC
* * **
22744334 AAAGAGTCAATTCATATTGCGAGAAATGAGTTGAGC
1 AAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGC
22744370 TCGAGATCAC
Statistics
Matches: 793, Mismatches: 99, Indels: 57
0.84 0.10 0.06
Matches are distributed among these distances:
86 3 0.00
87 142 0.18
88 287 0.36
89 203 0.26
90 91 0.11
91 64 0.08
92 1 0.00
93 1 0.00
94 1 0.00
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (87 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
TGTTTTTCAATTTATGTTTTTC
Found at i:22743862 original size:177 final size:174
Alignment explanation
Indices: 22743361--22744369 Score: 1130
Period size: 177 Copynumber: 5.7 Consensus size: 174
22743351 CCTTCAAAAA
* * **
22743361 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTGA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
* * * *
22743426 TGTTTTTTCAATTTACGCTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGT
66 TG-TTTTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
* * * ***
22743491 CATACGCTGAGGTATTTTCCATTTCTGTTCTTT-AATTTCTACGGTTCAA
130 CA-A-GCTGAGGTATTTTCGATTTCTGTT-TTTCAA-TT-TATGTTTTTC
* * * * * **
22743540 AAAAATTAGCTCATATTGCGAGAGGTGAGTTGAGCCTTGACTGACACGCTGAGGTATTTTTGATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCA-GGGCACGCTGAGGTATTTTCAATT
* *
22743605 TCCGTTTTTCAATTTATGTTTTTCAAAAATCAACTCATAATTGCGAGAGGTGAGTTGAGCCTCAG
64 TCTGTTTTTCAATTTATGCTTTTCAAAAATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCCTCAG
* * * *
22743670 GGCACGCTGAGGTATTTTTGATTTCCGTTTTTCAATTTATGTTTTTC
128 GACAAGCTGAGGTATTTTCGATTTCTGTTTTTCAATTTATGTTTTTC
*
22743717 AAAAATCAACTCATAATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTTAATTT
1 AAAAATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
* * *
22743782 CTG-CTTTCTGATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
65 CTGTTTTTC-AATTTATGCTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
**
22743846 GGACAAGCTGAGGTATTTTTTATTTCTGTTTTTCAATTTATGTTTTTC
127 GGACAAGCTGAGGTATTTTCGATTTCTGTTTTTCAATTTATGTTTTTC
22743894 AAAAATCAACTCATAATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 AAAAATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
* * * * * *
22743959 CTG-CTTTCTGATTTTTTCTTTTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTA
65 CTGTTTTTC-AATTTATGCTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
* *
22744023 GGACACGCTGAGGTATTTTCGATTTCCGTTTTTCAATTTATGTTTTTC
127 GGACAAGCTGAGGTATTTTCGATTTCTGTTTTTCAATTTATGTTTTTC
* * * **
22744071 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGTTATTCTCAATTAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
* *
22744136 TGTTTTTCAATTTATGCTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTC
66 TGTTTTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--
* * * ** * * *
22744201 ACATGCCGAGGTATTTTCAAAATCTGTTTTGCAAATTCTG-TTTTC
129 ACAAGCTGAGGTATTTTCGATTTCTGTTTTTCAATTTATGTTTTTC
** ** ** *
22744246 AAAAATCAACTCATATTGCGAGAATTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC--GCTGAGGTATTTTCAATT
* * * * * * **
22744311 TCTATTTTTTATGTTTA-G-TTTTTAAAGAGTCAATTCATATTGCGAGAAATGAGTTGAGC
64 TCTGTTTTTCA-ATTTATGCTTTTCAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGC
22744370 TCGAGATCAC
Statistics
Matches: 726, Mismatches: 89, Indels: 32
0.86 0.11 0.04
Matches are distributed among these distances:
174 37 0.05
175 48 0.07
176 132 0.18
177 325 0.45
178 45 0.06
179 56 0.08
180 34 0.05
181 49 0.07
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (174 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
TGTTTTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
AAGCTGAGGTATTTTCGATTTCTGTTTTTCAATTTATGTTTTTC
Found at i:22744240 original size:14 final size:13
Alignment explanation
Indices: 22744214--22744249 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
22744204 TGCCGAGGTA
22744214 TTTTCAAAATCTG
1 TTTTCAAAATCTG
*
22744227 TTTTGCAAATTCTG
1 TTTT-CAAAATCTG
22744241 TTTTCAAAA
1 TTTTCAAAA
22744250 ATCAACTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.31, C:0.14, G:0.08, T:0.47
Consensus pattern (13 bp):
TTTTCAAAATCTG
Found at i:22746099 original size:3 final size:3
Alignment explanation
Indices: 22746084--22746122 Score: 62
Period size: 3 Copynumber: 13.0 Consensus size: 3
22746074 GTTATTTTCA
22746084 TAT TAT TGA- TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
22746123 GTACTTTTGT
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 1 0.03
3 32 0.94
4 1 0.03
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:22761628 original size:44 final size:44
Alignment explanation
Indices: 22761564--22761860 Score: 154
Period size: 44 Copynumber: 6.7 Consensus size: 44
22761554 ATTTTACTTT
* * *
22761564 CTTCAGTCTGCTCTACTGCAACTTCAGGGAGATAAGACTTGTAA
1 CTTCAATCTGCCCCACTGCAACTTCAGGGAGATAAGACTTGTAA
* * ** **
22761608 CTTCAA-CTTGCCCCACTGCAATTTCTGAGG-GATAAGGTTTGTGG
1 CTTCAATC-TGCCCCACTGCAACTTCAG-GGAGATAAGACTTGTAA
* * * * *
22761652 CTTCAATCTACTCCTCTACAACTTCAGGGAGATAAGA-TT-CACCA
1 CTTCAATCTGCCCCACTGCAACTTCAGGGAGATAAGACTTGTA--A
* * * * *
22761696 TCTTCTATCTGCTCTACTGCAACTTCAGGGAAATAAGACATGTAA
1 -CTTCAATCTGCCCCACTGCAACTTCAGGGAGATAAGACTTGTAA
* * ** * *
22761741 CTTCAACCTGCCCCACTGCAACATCAAGGG-GATAAGGTTTATAG
1 CTTCAATCTGCCCCACTGCAACTTC-AGGGAGATAAGACTTGTAA
* * * * * * * *
22761785 CTTTAACTCTGCTCTACTACAATTTCAGAGAGATAAGATTTGCTAT
1 CTTCAA-TCTGCCCCACTGCAACTTCAGGGAGATAAGACTTG-TAA
* * * *
22761831 CTTCGATCCGCTCCACTGCAACTTTAGGGA
1 CTTCAATCTGCCCCACTGCAACTTCAGGGA
22761861 AATATGATTC
Statistics
Matches: 183, Mismatches: 57, Indels: 25
0.69 0.22 0.09
Matches are distributed among these distances:
43 5 0.03
44 91 0.50
45 79 0.43
46 7 0.04
47 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (44 bp):
CTTCAATCTGCCCCACTGCAACTTCAGGGAGATAAGACTTGTAA
Found at i:22761861 original size:134 final size:133
Alignment explanation
Indices: 22761573--22761864 Score: 372
Period size: 133 Copynumber: 2.2 Consensus size: 133
22761563 TCTTCAGTCT
* * * ** *
22761573 GCTCTACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACTTGCCCCACTGCAATTTCTGAGG
1 GCTCTACTGCAACTTCAGGGAAATAAGACATGTAACTTCAACCTGCCCCACTGCAACATCAGAGG
* * * *
22761638 GATAAGGTTTGTGGCTTCAATCTACTCCTCTACAACTTCAGGGAGATAAGATTCACCATCTTCTA
66 GATAAGGTTTATAGCTTCAATCTACTCCTCTACAACTTCAGAGAGATAAGATTCACCATCTTCGA
*
22761703 TCT
131 TCC
22761706 GCTCTACTGCAACTTCAGGGAAATAAGACATGTAACTTCAACCTGCCCCACTGCAACATCA-AGG
1 GCTCTACTGCAACTTCAGGGAAATAAGACATGTAACTTCAACCTGCCCCACTGCAACATCAGA-G
* * * ** *
22761770 GGATAAGGTTTATAGCTTTAACTCTGCT-CTACTACAATTTCAGAGAGATAAGATTTGCTATCTT
65 GGATAAGGTTTATAGCTTCAA-TCTACTCCT-CTACAACTTCAGAGAGATAAGATTCACCATCTT
22761834 CGATCC
128 CGATCC
* *
22761840 GCTCCACTGCAACTTTAGGGAAATA
1 GCTCTACTGCAACTTCAGGGAAATA
22761865 TGATTCATAG
Statistics
Matches: 137, Mismatches: 19, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
132 1 0.01
133 76 0.55
134 60 0.44
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (133 bp):
GCTCTACTGCAACTTCAGGGAAATAAGACATGTAACTTCAACCTGCCCCACTGCAACATCAGAGG
GATAAGGTTTATAGCTTCAATCTACTCCTCTACAACTTCAGAGAGATAAGATTCACCATCTTCGA
TCC
Found at i:22762194 original size:42 final size:43
Alignment explanation
Indices: 22762146--22762258 Score: 120
Period size: 44 Copynumber: 2.6 Consensus size: 43
22762136 GATTTCAACT
* *
22762146 TGCTCCACTACTGCTTAGGGAGATAGGA-TGATGGCTTAAATC
1 TGCTCCACTACTGCTTAGGGAGATAAGATTGATAGCTTAAATC
* * * * * **
22762188 TGCTCCACTATTGCTTAGAGAGACAAGATTTGTTATCTTTGATC
1 TGCTCCACTACTGCTTAGGGAGATAAGA-TTGATAGCTTAAATC
*
22762232 TGCTCTACTACTGCTTAGGGAGATAAG
1 TGCTCCACTACTGCTTAGGGAGATAAG
22762259 CTCTACAATT
Statistics
Matches: 56, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
42 24 0.43
44 32 0.57
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.33
Consensus pattern (43 bp):
TGCTCCACTACTGCTTAGGGAGATAAGATTGATAGCTTAAATC
Found at i:22762330 original size:88 final size:88
Alignment explanation
Indices: 22762223--22762418 Score: 268
Period size: 88 Copynumber: 2.2 Consensus size: 88
22762213 AGATTTGTTA
* * *
22762223 TCTTTGATCTGCTCTACTACTGCTTAGGGAGATAAGCTCTACAA-TTTCTAGCCTGTTATCCTAC
1 TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTC-AGCCTGTTACCCTAC
22762287 TGCTTAGGGGGTTAAGGCTCATCG
65 TGCTTAGGGGGTTAAGGCTCATCG
* * **
22762311 TCTTTGATTTTCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACT
1 TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAGCCTGTTACCCTACT
*
22762376 GCTTAGGGGGTTAAGGCTCACCG
66 GCTTAGGGGGTTAAGGCTCATCG
* ** *
22762399 TATTCAATCTGTTCCACTAC
1 TCTTTGATCTGCTCCACTAC
22762419 AACTTTAGGA
Statistics
Matches: 93, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
88 89 0.96
89 4 0.04
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (88 bp):
TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAGCCTGTTACCCTACT
GCTTAGGGGGTTAAGGCTCATCG
Found at i:22762469 original size:89 final size:88
Alignment explanation
Indices: 22762282--22762472 Score: 224
Period size: 88 Copynumber: 2.2 Consensus size: 88
22762272 AGCCTGTTAT
* * ** * ** * *
22762282 CCTACTGCTTAGGGGGTTAAGGCTCATCGTCTTTGATTTTCTCCACTACTGCTTAGGGAGATAAG
1 CCTACTGCTTAGGGGGTTAAGGCTCACCGTATTCAATTGTCTCCACTACAACTTAGGAAGACAAG
* **
22762347 ATCTGTAATTTTCAGCCTGTTAC
66 ATCTGTAATCTTCAGCCTACTAC
22762370 CCTACTGCTTAGGGGGTTAAGGCTCACCGTATTCAATCTGT-TCCACTACAACTTTAGGAAGACA
1 CCTACTGCTTAGGGGGTTAAGGCTCACCGTATTCAAT-TGTCTCCACTACAAC-TTAGGAAGACA
*
22762434 AGATTTGTAATCTTCAGCCTACT-C
64 AGATCTGTAATCTTCAGCCTACTAC
22762458 CACTACTGCTTAGGG
1 C-CTACTGCTTAGGG
22762473 AGATAGGATG
Statistics
Matches: 87, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
88 44 0.51
89 43 0.49
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.33
Consensus pattern (88 bp):
CCTACTGCTTAGGGGGTTAAGGCTCACCGTATTCAATTGTCTCCACTACAACTTAGGAAGACAAG
ATCTGTAATCTTCAGCCTACTAC
Found at i:22762621 original size:130 final size:131
Alignment explanation
Indices: 22762396--22762876 Score: 716
Period size: 131 Copynumber: 3.7 Consensus size: 131
22762386 TTAAGGCTCA
* * * * * * *
22762396 CCGTATTCAATCTGTTCCACTACAACTTTAGGAAGACAAGATTTGTAATCTTCAGCCTACTCCAC
1 CCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTGCAATCTTCAGCCTACTCCAC
* *
22762461 TACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGGTTAGGAAGGCAAGATTC
66 TACTGCTTAGGGAGATAGGATGGTGACTTAAATCTGCTCCACTACTGGTTAGGAAGACAAGATTC
22762526 G
131 G
* **
22762527 TCGTCTTCGATCTGTTTTACTGCAACTTCAGGGAGACAAGATCTGCAATCTT-AGCCTACTCCAC
1 CCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTGCAATCTTCAGCCTACTCCAC
*
22762591 TACTGCTTAGGGAGATAGGATGGTGACTTAAATCTGCTCCACTACTGGTTA-GAGAGATAAGATT
66 TACTGCTTAGGGAGATAGGATGGTGACTTAAATCTGCTCCACTACTGGTTAGGA-AGACAAGATT
22762655 CG
130 CG
* *
22762657 CCATCTTCGATCTGTTCCACTGCAACTTCAAGGAGACAAGATCTGCAATCTTCAGCCTACTCCAC
1 CCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTGCAATCTTCAGCCTACTCCAC
* * * * * *
22762722 TACTACTTAGGAAGATAGGACGGTGACTTAAATCTGCCCCATTACTGATTAGGGAA-ACAAGATT
66 TACTGCTTAGGGAGATAGGATGGTGACTTAAATCTGCTCCACTACTGGTTA-GGAAGACAAGATT
22762786 CG
130 CG
* *
22762788 CCGTCTTCGATCTGTTCCACTGCAACTTCAGAGAGACAAGATCTGTAATCTTCAGCCTACTCCAC
1 CCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTGCAATCTTCAGCCTACTCCAC
22762853 TACTGCTTAGGGAGATAGGATGGT
66 TACTGCTTAGGGAGATAGGATGGT
22762877 CAATCCTCAG
Statistics
Matches: 314, Mismatches: 32, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
129 2 0.01
130 119 0.38
131 190 0.61
132 1 0.00
133 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (131 bp):
CCGTCTTCGATCTGTTCCACTGCAACTTCAGGGAGACAAGATCTGCAATCTTCAGCCTACTCCAC
TACTGCTTAGGGAGATAGGATGGTGACTTAAATCTGCTCCACTACTGGTTAGGAAGACAAGATTC
G
Found at i:22762719 original size:261 final size:262
Alignment explanation
Indices: 22762405--22762876 Score: 752
Period size: 261 Copynumber: 1.8 Consensus size: 262
22762395 ACCGTATTCA
* * * *
22762405 ATCTGTTCCACTACAACTTTAGGAAGACAAGATTTGTAATCTTCAGCCTACTCCACTACTGCTTA
1 ATCTGTTCCACTACAACTTAAGGAAGACAAGATCTGCAATCTTCAGCCTACTCCACTACTACTTA
* * * * * * *
22762470 GGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGGTTA-GGAAGGCAAGATTCGTCGTCTT
66 GGAAGATAGGACGGTGACTTAAATCTGCCCCACTACTGATTAGGGAA-ACAAGATTCGCCGTCTT
** *
22762534 CGATCTGTTTTACTGCAACTTCAGGGAGACAAGATCTGCAATCTT-AGCCTACTCCACTACTGCT
130 CGATCTGTTCCACTGCAACTTCAGAGAGACAAGATCTGCAATCTTCAGCCTACTCCACTACTGCT
22762598 TAGGGAGATAGGATGGTGACTTAAATCTGCTCCACTACTGGTTAGAGAGATAAGATTCGCCATCT
195 TAGGGAGATAGGATGGTGACTTAAATCTGCTCCACTACTGGTTAGAGAGATAAGATTCGCCATCT
22762663 TCG
260 TCG
*
22762666 ATCTGTTCCACTGCAACTTCAAGG-AGACAAGATCTGCAATCTTCAGCCTACTCCACTACTACTT
1 ATCTGTTCCACTACAACTT-AAGGAAGACAAGATCTGCAATCTTCAGCCTACTCCACTACTACTT
*
22762730 AGGAAGATAGGACGGTGACTTAAATCTGCCCCATTACTGATTAGGGAAACAAGATTCGCCGTCTT
65 AGGAAGATAGGACGGTGACTTAAATCTGCCCCACTACTGATTAGGGAAACAAGATTCGCCGTCTT
*
22762795 CGATCTGTTCCACTGCAACTTCAGAGAGACAAGATCTGTAATCTTCAGCCTACTCCACTACTGCT
130 CGATCTGTTCCACTGCAACTTCAGAGAGACAAGATCTGCAATCTTCAGCCTACTCCACTACTGCT
22762860 TAGGGAGATAGGATGGT
195 TAGGGAGATAGGATGGT
22762877 CAATCCTCAG
Statistics
Matches: 191, Mismatches: 17, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
261 148 0.77
262 43 0.23
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (262 bp):
ATCTGTTCCACTACAACTTAAGGAAGACAAGATCTGCAATCTTCAGCCTACTCCACTACTACTTA
GGAAGATAGGACGGTGACTTAAATCTGCCCCACTACTGATTAGGGAAACAAGATTCGCCGTCTTC
GATCTGTTCCACTGCAACTTCAGAGAGACAAGATCTGCAATCTTCAGCCTACTCCACTACTGCTT
AGGGAGATAGGATGGTGACTTAAATCTGCTCCACTACTGGTTAGAGAGATAAGATTCGCCATCTT
CG
Found at i:22767278 original size:253 final size:253
Alignment explanation
Indices: 22766828--22767293 Score: 639
Period size: 253 Copynumber: 1.8 Consensus size: 253
22766818 GTGAATATTG
* * * *
22766828 AGATTCTCTTATTTCGAAGAAATGAAACATCACATCCAGCATGTAGGACATAACATTTCAAACCT
1 AGATTCTCTTATTTCGAAGAAATAAAACATCACATCCAACACGTAGGACACAACATTTCAAACCT
* * *
22766893 TCGATATCAAAATCATCTCATAATTCCCAGAATTTATGCATTCAAAATTTAAAAAGGATACTTGG
66 TCGATACCAAAATCATCTCATAATTCCCAGAACTCATGCATTCAAAATTTAAAAAGGATACTTGG
* * * * *
22766958 TCGTTCGGTCAAACGATAAATCGAAACCCAACACATAGGGCACAATTTCTCGAAATTTCCGAACA
131 TCGTTCAGTCAAACGACAAATCAAAACCCAACACATAGGGCACAATCTCTCGAAATTTCCAAACA
* *
22767023 CGAAATATTGCCTTGTTTAAAAAATCTTGAATAAAAATGTAATAGTATGAAACGATTA
196 CGAAATATTACATTGTTTAAAAAATCTTGAATAAAAATGTAATAGTATGAAACGATTA
* ** *** *
22767081 AGATTCTCTTGTTTCGAAGAAATAAAATGTCACATCCAACACGTAGGACACGTTATTTCGAACCT
1 AGATTCTCTTATTTCGAAGAAATAAAACATCACATCCAACACGTAGGACACAACATTTCAAACCT
* * * * *
22767146 TTGATACCAAAATCATCTCATAATTTCC-GAAACTCATGTC-TTGAAATTTTAAAAAGGATATTT
66 TCGATACCAAAATCATCTCATAATTCCCAG-AACTCATG-CATTCAAAATTTAAAAAGGATACTT
* * *
22767209 GGTTGTTCAGTCAAACGACAAATCAAAACCCAGCACGTAGGGCACAATCTCTCGAAATTTCCAAA
129 GGTCGTTCAGTCAAACGACAAATCAAAACCCAACACATAGGGCACAATCTCTCGAAATTTCCAAA
22767274 CACGAAATATTACATTGTTT
194 CACGAAATATTACATTGTTT
22767294 TGAATAAAAC
Statistics
Matches: 182, Mismatches: 29, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
252 1 0.01
253 180 0.99
254 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.13, T:0.29
Consensus pattern (253 bp):
AGATTCTCTTATTTCGAAGAAATAAAACATCACATCCAACACGTAGGACACAACATTTCAAACCT
TCGATACCAAAATCATCTCATAATTCCCAGAACTCATGCATTCAAAATTTAAAAAGGATACTTGG
TCGTTCAGTCAAACGACAAATCAAAACCCAACACATAGGGCACAATCTCTCGAAATTTCCAAACA
CGAAATATTACATTGTTTAAAAAATCTTGAATAAAAATGTAATAGTATGAAACGATTA
Found at i:22767536 original size:21 final size:22
Alignment explanation
Indices: 22767512--22767559 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
22767502 AAAAGAAATA
*
22767512 AAATGAACAATAAGACAATT-T
1 AAATAAACAATAAGACAATTCT
*
22767533 AAATAAACAATGAGACAATTCT
1 AAATAAACAATAAGACAATTCT
22767555 AAATA
1 AAATA
22767560 GATAATAGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 18 0.75
22 6 0.25
ACGTcount: A:0.58, C:0.10, G:0.08, T:0.23
Consensus pattern (22 bp):
AAATAAACAATAAGACAATTCT
Found at i:22769093 original size:18 final size:18
Alignment explanation
Indices: 22769070--22769104 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
22769060 TTGATATTTC
22769070 TCTGCTACTGTTTCTTTT
1 TCTGCTACTGTTTCTTTT
**
22769088 TCTGCTGTTGTTTCTTT
1 TCTGCTACTGTTTCTTT
22769105 GTTGCTCTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.03, C:0.20, G:0.14, T:0.63
Consensus pattern (18 bp):
TCTGCTACTGTTTCTTTT
Found at i:22769973 original size:19 final size:18
Alignment explanation
Indices: 22769949--22769997 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 18
22769939 GTGAAAATCT
22769949 AATGCAAATGATGCAATG
1 AATGCAAATGATGCAATG
*
22769967 CAATGCAAATGCATGGAATG
1 -AATGCAAATG-ATGCAATG
22769987 AATGCAAATGA
1 AATGCAAATGA
22769998 AAGAAAGACG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 1 0.04
19 20 0.71
20 7 0.25
ACGTcount: A:0.45, C:0.12, G:0.22, T:0.20
Consensus pattern (18 bp):
AATGCAAATGATGCAATG
Found at i:22771390 original size:5 final size:5
Alignment explanation
Indices: 22771375--22771405 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
22771365 AAATAGATTT
*
22771375 ATAAA AAAAA ATAAA ATAAA ATAAA ATAAA A
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA A
22771406 AACAAAAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (5 bp):
ATAAA
Found at i:22776412 original size:32 final size:31
Alignment explanation
Indices: 22776376--22776455 Score: 97
Period size: 31 Copynumber: 2.5 Consensus size: 31
22776366 TTTTTGGCCC
* * **
22776376 AATTTATTACTTGAACTTGAATTTTTTTTCCT
1 AATTTAATACTTAAACTT-AATACTTTTTCCT
*
22776408 AATTTAATATTTAAACTTAATACTTTTTCCT
1 AATTTAATACTTAAACTTAATACTTTTTCCT
*
22776439 AATTTAGTACTTAAACT
1 AATTTAATACTTAAACT
22776456 AGCAATGTTA
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
31 26 0.63
32 15 0.37
ACGTcount: A:0.33, C:0.12, G:0.04, T:0.51
Consensus pattern (31 bp):
AATTTAATACTTAAACTTAATACTTTTTCCT
Found at i:22776581 original size:31 final size:31
Alignment explanation
Indices: 22776526--22776596 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 31
22776516 TGTTTAAAAA
* * *
22776526 TATCAAATTAAGAAATTGTATCAAGT-TCATG
1 TATCAAATTAAGAAAATATATCAAGTCT-AAG
*
22776557 TATCAAATTAAGAAAATATGTCAAGTCTAAG
1 TATCAAATTAAGAAAATATATCAAGTCTAAG
22776588 TATCAAATT
1 TATCAAATT
22776597 GAATAAAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 34 0.97
32 1 0.03
ACGTcount: A:0.45, C:0.10, G:0.11, T:0.34
Consensus pattern (31 bp):
TATCAAATTAAGAAAATATATCAAGTCTAAG
Found at i:22776773 original size:31 final size:31
Alignment explanation
Indices: 22776734--22776803 Score: 81
Period size: 30 Copynumber: 2.3 Consensus size: 31
22776724 TTCCTTTTGA
* **
22776734 TAAG-AAAATGTGTCAAGTTCATGTACTAAAT
1 TAAGAAAAATG-GTCAAATTCAAATACTAAAT
*
22776765 TAA-AAAAATGGTCAAATTTAAATACTAAAT
1 TAAGAAAAATGGTCAAATTCAAATACTAAAT
22776795 TAAGAAAAA
1 TAAGAAAAA
22776804 AAATATTAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
30 19 0.58
31 14 0.42
ACGTcount: A:0.53, C:0.07, G:0.11, T:0.29
Consensus pattern (31 bp):
TAAGAAAAATGGTCAAATTCAAATACTAAAT
Found at i:22783435 original size:25 final size:25
Alignment explanation
Indices: 22783415--22783465 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
22783405 GGCTTGGTTT
22783415 GGTAAGTAAATCAACCACTTGGTCC
1 GGTAAGTAAATCAACCACTTGGTCC
22783440 GGTAAGTAAATCAACCACTTGGTCC
1 GGTAAGTAAATCAACCACTTGGTCC
22783465 G
1 G
22783466 TTGAATAGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.24
Consensus pattern (25 bp):
GGTAAGTAAATCAACCACTTGGTCC
Found at i:22784858 original size:21 final size:22
Alignment explanation
Indices: 22784817--22784860 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
22784807 AATAAAAAAA
22784817 TCATGTCTCGAGACAATACACC
1 TCATGTCTCGAGACAATACACC
**
22784839 TCATGTCTTTAGAC-ATACACC
1 TCATGTCTCGAGACAATACACC
22784860 T
1 T
22784861 AAGAATGCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.30, C:0.30, G:0.11, T:0.30
Consensus pattern (22 bp):
TCATGTCTCGAGACAATACACC
Found at i:22786411 original size:21 final size:21
Alignment explanation
Indices: 22786387--22786432 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
22786377 TTAGGCTTCG
22786387 CGGCGGCAGGTTTCTTAGCTA
1 CGGCGGCAGGTTTCTTAGCTA
* *
22786408 CGGCGGCTGGTTTCTTAGCTG
1 CGGCGGCAGGTTTCTTAGCTA
22786429 CGGC
1 CGGC
22786433 ATAAGCCGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.09, C:0.26, G:0.37, T:0.28
Consensus pattern (21 bp):
CGGCGGCAGGTTTCTTAGCTA
Found at i:22791180 original size:24 final size:24
Alignment explanation
Indices: 22791129--22791180 Score: 88
Period size: 23 Copynumber: 2.2 Consensus size: 24
22791119 TGAATGAATG
22791129 GTTTTAAATGGAAATTTTTCCATA
1 GTTTTAAATGGAAATTTTTCCATA
*
22791153 -TTTTAAATGGCAATTTTTCCATA
1 GTTTTAAATGGAAATTTTTCCATA
22791176 GTTTT
1 GTTTT
22791181 TATAGTGGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 22 0.85
24 4 0.15
ACGTcount: A:0.29, C:0.10, G:0.12, T:0.50
Consensus pattern (24 bp):
GTTTTAAATGGAAATTTTTCCATA
Found at i:22797823 original size:12 final size:13
Alignment explanation
Indices: 22797800--22797829 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
22797790 AATTTGTGTG
22797800 TTTTTTATTTTTA
1 TTTTTTATTTTTA
22797813 TTTTTTA-TTTTA
1 TTTTTTATTTTTA
22797825 TTTTT
1 TTTTT
22797830 CACAATTGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (13 bp):
TTTTTTATTTTTA
Found at i:22802466 original size:19 final size:20
Alignment explanation
Indices: 22802424--22802466 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
22802414 TTTTTTTTCA
* *
22802424 TTTTAAAATATTTTTTATAG
1 TTTTTAAATATTTTTAATAG
22802444 -TTTTAAATATTTTTAAT-G
1 TTTTTAAATATTTTTAATAG
22802462 TTTTT
1 TTTTT
22802467 TGACTGGTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
18 1 0.05
19 19 0.95
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.65
Consensus pattern (20 bp):
TTTTTAAATATTTTTAATAG
Found at i:22803177 original size:172 final size:169
Alignment explanation
Indices: 22802870--22803356 Score: 459
Period size: 171 Copynumber: 2.8 Consensus size: 169
22802860 CCCCTTCCTC
* * *
22802870 TCTTTTTTTTGACATTATAAAAAAAGGGTTAAATTTT-AAATTTGATCTCTCTACTTTTTTTTGA
1 TCTTTTTTTTGACATTAT--AAAAATGGTTAAATTTTCAAATTTGATCCCTCTAC--TTTTTTAA
* * *** * * * * *
22802934 ATTACATAATAATGGTCAAATTTTAATTACAATT-CTTATATTATGTTTAAGTTTGAGTTTTGAT
62 ATTATATAAAAATGGTCAAATTTTAATT-TTGTTCCTTATACTACGTTTAAATTTGAGATTTAAT
* * *
22802998 ATCTATATTTTAATTATCGAAGGCCTTTCGATAAGGCACATCG-GT-T
126 CTCTATATTTTAATT-TCGAAGGCCTTTCAAT-A-GAACAT-GTGTCT
* *
22803044 TCTTTTTATTTGACATTATAAGAAATGG-TCAATTTTCAAATTTGATCCCTCTACATTTTTAAAT
1 TCTTTTT-TTTGACATTATAA-AAATGGTTAAATTTTCAAATTTGATCCCTCTACTTTTTTAAAT
* * **
22803108 AATATAAAAATGGTTAAATTTTAATTTTGTTCCTTATACTACGTCCAAATTTGAGATTTAATCTC
64 TATATAAAAATGGTCAAATTTTAATTTTGTTCCTTATACTACGTTTAAATTTGAGATTTAATCTC
**
22803173 TATATTTTAATTTTTAAGGCCTTTCAATAGAACATGTGTCCT
129 TATATTTTAATTTCGAAGGCCTTTCAATAGAACATGTGT-CT
* *
22803215 TCCCCTTTTTTTTGACATTAT--AAATGGTTGAA-TTTCAAATTTGATCCCTCTATTTTTTTCAA
1 T---CTTTTTTTTGACATTATAAAAATGGTTAAATTTTCAAATTTGATCCCTCTACTTTTTT-AA
* * * * * * * * *
22803277 GTTATATAACAATGGTCAAAATTCAATTTTGATCCCTATACTACATTTAAATTTAAGATTTAAAC
62 ATTATATAAAAATGGTCAAATTTTAATTTTGTTCCTTATACTACGTTTAAATTTGAGATTTAATC
22803342 TCTATATTTTAATTT
127 TCTATATTTTAATTT
22803357 TTGACAAACT
Statistics
Matches: 261, Mismatches: 40, Indels: 27
0.80 0.12 0.08
Matches are distributed among these distances:
168 1 0.00
169 7 0.03
170 32 0.12
171 89 0.34
172 67 0.26
173 20 0.08
174 34 0.13
175 11 0.04
ACGTcount: A:0.32, C:0.13, G:0.10, T:0.46
Consensus pattern (169 bp):
TCTTTTTTTTGACATTATAAAAATGGTTAAATTTTCAAATTTGATCCCTCTACTTTTTTAAATTA
TATAAAAATGGTCAAATTTTAATTTTGTTCCTTATACTACGTTTAAATTTGAGATTTAATCTCTA
TATTTTAATTTCGAAGGCCTTTCAATAGAACATGTGTCT
Found at i:22803884 original size:14 final size:14
Alignment explanation
Indices: 22803859--22803893 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
22803849 TTAAACTATG
22803859 TTTAAA-TTTATAA
1 TTTAAATTTTATAA
*
22803872 TTTAAATTTTATAT
1 TTTAAATTTTATAA
22803886 TTTAAATT
1 TTTAAATT
22803894 GATATAGTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 6 0.30
14 14 0.70
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (14 bp):
TTTAAATTTTATAA
Found at i:22803898 original size:13 final size:13
Alignment explanation
Indices: 22803859--22803898 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
22803849 TTAAACTATG
*
22803859 TTTAAATTTATAA
1 TTTAAATTTATAT
22803872 TTTAAATTTTATAT
1 TTTAAA-TTTATAT
*
22803886 TTTAAATTGATAT
1 TTTAAATTTATAT
22803899 AGTTCGCACC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 12 0.50
14 12 0.50
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (13 bp):
TTTAAATTTATAT
Found at i:22810722 original size:41 final size:41
Alignment explanation
Indices: 22810646--22810723 Score: 95
Period size: 41 Copynumber: 1.9 Consensus size: 41
22810636 ATCCCTCAAC
* * *
22810646 ATTTATACATTGGTAATATTTACACATCATGTAATTTGATT
1 ATTTATACATTGATAATATTTACACAACATATAATTTGATT
* *
22810687 ATTTATACATTGATATTATTTAC-CAAGATAATAATTT
1 ATTTATACATTGATAATATTTACACAACAT-ATAATTT
22810724 TCATATTTTC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
40 4 0.13
41 27 0.87
ACGTcount: A:0.37, C:0.09, G:0.08, T:0.46
Consensus pattern (41 bp):
ATTTATACATTGATAATATTTACACAACATATAATTTGATT
Found at i:22831030 original size:22 final size:23
Alignment explanation
Indices: 22831005--22831069 Score: 62
Period size: 23 Copynumber: 2.8 Consensus size: 23
22830995 CAACCAAATC
22831005 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
22831027 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
** *
22831050 ACGTCATCACATATCTATAA
1 AATTCAT-ACATATTTATAA
22831070 CCAGGTTTGT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
22 6 0.17
23 18 0.51
24 11 0.31
ACGTcount: A:0.43, C:0.15, G:0.06, T:0.35
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:22834126 original size:18 final size:18
Alignment explanation
Indices: 22834100--22834138 Score: 69
Period size: 18 Copynumber: 2.1 Consensus size: 18
22834090 CTAAGATAAT
22834100 TTAAAAAAAATTTAGAACA
1 TTAAAAAAAA-TTAGAACA
22834119 TTAAAAAAAATTAGAACA
1 TTAAAAAAAATTAGAACA
22834137 TT
1 TT
22834139 CGTAGATTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.28
Consensus pattern (18 bp):
TTAAAAAAAATTAGAACA
Found at i:22834632 original size:3 final size:3
Alignment explanation
Indices: 22834624--22834770 Score: 103
Period size: 3 Copynumber: 49.0 Consensus size: 3
22834614 ATAAACATGA
22834624 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
22834672 AAGT ATT ATGT AA- AACGT -AT AA- ACA- AAT -AT GA- AAT -TT AAGT
1 AA-T AAT A-AT AAT AA--T AAT AAT A-AT AAT AAT AAT AAT AAT AA-T
* * *
22834713 AAT ATAT GATT AA- CAT ATT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT A-AT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
22834759 AAT AAT AAT AAT
1 AAT AAT AAT AAT
22834771 GCAAATAAGT
Statistics
Matches: 117, Mismatches: 12, Indels: 30
0.74 0.08 0.19
Matches are distributed among these distances:
2 10 0.09
3 95 0.81
4 11 0.09
5 1 0.01
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:22834766 original size:105 final size:105
Alignment explanation
Indices: 22834583--22834818 Score: 352
Period size: 105 Copynumber: 2.2 Consensus size: 105
22834573 AAAAATTAAT
* *
22834583 TATAAACGAATGTGAAATTTAAAG-AAAAATGATAAACATGAAATAATAATAATAATAATAATAA
1 TATAAACAAATATGAAATTT-AAGTAAAAATGATAAACAT-AAATAATAATAATAATAATAATAA
22834647 TAATAATAATAATAATAAT-AATAATAAGTATTATGTAAAACG
64 TAATAATAATAATAATAATGAA-AATAAGTATTATGTAAAACG
* * *
22834689 TATAAACAAATATGAAATTTAAGTAATATATGATTAACAT-ATTAATAATAATAATAATAATAAT
1 TATAAACAAATATGAAATTTAAGTAA-AAATGATAAACATAAATAATAATAATAATAATAATAAT
* *
22834753 AATAATAATAATAATAATGCAAATAAGTATTATGTAAAATG
65 AATAATAATAATAATAATGAAAATAAGTATTATGTAAAACG
22834794 TATAAACAAATATGAAATTTAAGTA
1 TATAAACAAATATGAAATTTAAGTA
22834819 GTAGTAATAA
Statistics
Matches: 120, Mismatches: 7, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
105 88 0.73
106 21 0.17
107 11 0.09
ACGTcount: A:0.58, C:0.03, G:0.08, T:0.32
Consensus pattern (105 bp):
TATAAACAAATATGAAATTTAAGTAAAAATGATAAACATAAATAATAATAATAATAATAATAATA
ATAATAATAATAATAATGAAAATAAGTATTATGTAAAACG
Found at i:22836387 original size:44 final size:44
Alignment explanation
Indices: 22836303--22836388 Score: 102
Period size: 44 Copynumber: 2.0 Consensus size: 44
22836293 CGCTTTAATC
* * * *
22836303 TGCTCCACTGTAACTTCAGGGAGATAGGATTAATAGTTTCAATA
1 TGCTCCACTGCAACTTCAGGAAGATAAGATTAATAATTTCAATA
* *
22836347 TGCTCCGCTGCAACTTCAGGAAGATAAGACTT-GTAATTTCAA
1 TGCTCCACTGCAACTTCAGGAAGATAAGA-TTAATAATTTCAA
22836389 CCTACTCTAT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
44 33 0.94
45 2 0.06
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (44 bp):
TGCTCCACTGCAACTTCAGGAAGATAAGATTAATAATTTCAATA
Found at i:22836555 original size:45 final size:45
Alignment explanation
Indices: 22836486--22836862 Score: 243
Period size: 45 Copynumber: 8.4 Consensus size: 45
22836476 TTTAATCTAT
* * *
22836486 TCCACTGCAACTTCAGGGAAATAAGATTTTCTATCTTCAGTCTGC
1 TCCACTGCAACTTCAGAGAGATAAGATTTTCTATCTTCAATCTGC
* * *
22836531 TCCACTGCAACTTCAGAGAGATAAGACTTGT-AAT-TTCAACCTGC
1 TCCACTGCAACTTCAGAGAGATAAGA-TTTTCTATCTTCAATCTGC
* ** * *
22836575 TCCACTGCAACTTCATG-GAAATAAGATTCGCTATCTTTAGTCTGC
1 TCCACTGCAACTTCA-GAGAGATAAGATTTTCTATCTTCAATCTGC
* * *
22836620 TCCACTGCAACTTCAGGGAGATAAGA-TTT-TAACTTCAACCTGC
1 TCCACTGCAACTTCAGAGAGATAAGATTTTCTATCTTCAATCTGC
* * * * *
22836663 TCCACTGCACCTTCA-AGGCGATAAGCTTTGCTA---T-GATCTGC
1 TCCACTGCAACTTCAGA-GAGATAAGATTTTCTATCTTCAATCTGC
* * * **
22836704 TCTACTGCAACTTTAGAGAGATAAGATCTGTTTATTTATAGCTTCAATCTAT
1 TCCACTGCAACTTCAGAGAGATAAGA----TTT-TCTAT--CTTCAATCTGC
* * * * * * *
22836756 TCCACTGTAATTTCAGGGAAATAAGATTTGCTATCTTCAGTCTAC
1 TCCACTGCAACTTCAGAGAGATAAGATTTTCTATCTTCAATCTGC
* * ** ** * *
22836801 TCCACTGCAACTTCAGGGAGATAAGGTTTAGTGGCTTTAATCTGG
1 TCCACTGCAACTTCAGAGAGATAAGATTTTCTATCTTCAATCTGC
22836846 TCCACTGCAACTTCAGA
1 TCCACTGCAACTTCAGA
22836863 AAGAATAGAT
Statistics
Matches: 252, Mismatches: 60, Indels: 40
0.72 0.17 0.11
Matches are distributed among these distances:
41 24 0.10
42 2 0.01
43 33 0.13
44 37 0.15
45 120 0.48
46 5 0.02
47 3 0.01
48 3 0.01
51 1 0.00
52 24 0.10
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (45 bp):
TCCACTGCAACTTCAGAGAGATAAGATTTTCTATCTTCAATCTGC
Found at i:22836641 original size:89 final size:89
Alignment explanation
Indices: 22836486--22836825 Score: 375
Period size: 89 Copynumber: 3.8 Consensus size: 89
22836476 TTTAATCTAT
*
22836486 TCCACTGCAACTTCAGGGAAATAAGATTTTCTATCTTCAGTCTGCTCCACTGCAACTTCAGAGAG
1 TCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGAGAG
*
22836551 ATAAGACTTGTAATTTCAACCTGC
66 ATAAGACTTTTAATTTCAACCTGC
* * * *
22836575 TCCACTGCAACTTCATGGAAATAAGATTCGCTATCTTTAGTCTGCTCCACTGCAACTTCAGGGAG
1 TCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGAGAG
*
22836640 ATAAGA-TTTTAACTTCAACCTGC
66 ATAAGACTTTTAATTTCAACCTGC
* * ** * * * *
22836663 TCCACTGCACCTTCAAGGCGATAAGCTTTGCTA---TGA-TCTGCTCTACTGCAACTTTAGAGAG
1 TCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGAGAG
* **
22836724 ATAAGATCTGTTTATTTATAGCTTCAATCTAT
66 ATAAGA-CT-TTTA---AT---TTCAACCTGC
* * * *
22836756 TCCACTGTAATTTCAGGGAAATAAGATTTGCTATCTTCAGTCTACTCCACTGCAACTTCAGGGAG
1 TCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGAGAG
22836821 ATAAG
66 ATAAG
22836826 GTTTAGTGGC
Statistics
Matches: 205, Mismatches: 33, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
84 28 0.14
85 2 0.01
86 1 0.00
87 4 0.02
88 42 0.20
89 66 0.32
90 1 0.00
93 33 0.16
96 2 0.01
97 26 0.13
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (89 bp):
TCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGAGAG
ATAAGACTTTTAATTTCAACCTGC
Found at i:22838080 original size:53 final size:53
Alignment explanation
Indices: 22837989--22838090 Score: 152
Period size: 53 Copynumber: 1.9 Consensus size: 53
22837979 AAACCCCTTT
*
22837989 GGTCTCAAAGTGCCCTTTACGGGTTTTCGCCCCGGCCTCTCTTTTTTTTTAAA
1 GGTCTCAAAGTGCCCTTTACGGGTTTTCGCCCCGGCCTCTCCTTTTTTTTAAA
* **
22838042 GGTCTCAAAGTGCCCTTTGCGGGTTTTCGCATTC-GCCTCTCCTTTTTTT
1 GGTCTCAAAGTGCCCTTTACGGGTTTTCGC-CCCGGCCTCTCCTTTTTTT
22838091 AGGTGAAGTA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
53 43 0.98
54 1 0.02
ACGTcount: A:0.11, C:0.28, G:0.20, T:0.41
Consensus pattern (53 bp):
GGTCTCAAAGTGCCCTTTACGGGTTTTCGCCCCGGCCTCTCCTTTTTTTTAAA
Found at i:22842090 original size:47 final size:47
Alignment explanation
Indices: 22842036--22842461 Score: 753
Period size: 47 Copynumber: 9.1 Consensus size: 47
22842026 TTAGGATTTT
** * * *
22842036 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
22842083 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
22842130 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
22842177 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
22842224 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
22842271 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
22842318 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
22842365 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
22842412 ATGTGATGAATGTGAACATGCATATGTGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
22842459 ATG
1 ATG
22842462 CGAAACGTGT
Statistics
Matches: 369, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 369 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:22842502 original size:46 final size:46
Alignment explanation
Indices: 22842438--22842525 Score: 122
Period size: 46 Copynumber: 1.9 Consensus size: 46
22842428 CATGCATATG
* * *
22842438 TGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATA
1 TGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGGATA
* * *
22842484 TGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 TGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATG
22842526 TGTATATATA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 36 1.00
ACGTcount: A:0.32, C:0.09, G:0.33, T:0.26
Consensus pattern (46 bp):
TGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGGATA
Found at i:22842532 original size:141 final size:138
Alignment explanation
Indices: 22842067--22842510 Score: 683
Period size: 141 Copynumber: 3.2 Consensus size: 138
22842057 ATATATGAGA
*
22842067 TAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAAT
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAAT
22842132 GTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
66 GTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGA-GAATGTGAACATG
22842197 CATATGTGTG
130 CATATGTG-G
*
22842207 ATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAA
1 -TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAA
*
22842272 TGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAT
65 TGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGA-GAATGTGAACAT
*
22842337 GCATATATGTGA
129 GC--ATATGTGG
22842349 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAAT
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAAT
* * * * *
22842414 GTGATGAATGTGAACATGCATATGTGTGGTAAGGCCGAATGGCTAATGCGA-AACGTGTATGAGA
66 GTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGAGAATGTG-A--ACA
*
22842478 TGGATATGTGG
128 TGCATATGTGG
* * *
22842489 TAAAGCCAAATGGCTAATGTGA
1 TAAGGCCGAATGGCCAATGTGA
22842511 GATATGTATG
Statistics
Matches: 282, Mismatches: 16, Indels: 11
0.91 0.05 0.04
Matches are distributed among these distances:
139 5 0.02
140 27 0.10
141 239 0.85
142 4 0.01
143 7 0.02
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.25
Consensus pattern (138 bp):
TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAAT
GTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGAGAATGTGAACATGC
ATATGTGG
Found at i:22849672 original size:40 final size:41
Alignment explanation
Indices: 22849625--22849720 Score: 117
Period size: 40 Copynumber: 2.4 Consensus size: 41
22849615 TATCTCAGTA
*
22849625 TCGTACACTTAGTGCC-TCTTATAGCCAAAGTTA-TTCCAAC
1 TCGTACACTTAGTGCCAT-TTATAGCCAAAGCTATTTCCAAC
* * *
22849665 TCGTACACTTAGTGCCATTTGTAGCCAGAGCTATTTCGAAC
1 TCGTACACTTAGTGCCATTTATAGCCAAAGCTATTTCCAAC
*
22849706 -CGCACACTTAGTGCC
1 TCGTACACTTAGTGCC
22849721 GAACATAGTC
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
40 42 0.86
41 7 0.14
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (41 bp):
TCGTACACTTAGTGCCATTTATAGCCAAAGCTATTTCCAAC
Found at i:22855269 original size:37 final size:37
Alignment explanation
Indices: 22855214--22855291 Score: 120
Period size: 37 Copynumber: 2.1 Consensus size: 37
22855204 TATTACGAAA
** *
22855214 TCTTACCCGGACGTAATCTCCACACGAAGTTATCGGG
1 TCTTACCCGGACAAAATCTCCACACGAAGTCATCGGG
*
22855251 TCTTACCCGGACAAAATCTCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCTCCACACGAAGTCATCGGG
22855288 TCTT
1 TCTT
22855292 TAGAGCTCAG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCTCCACACGAAGTCATCGGG
Found at i:22855537 original size:49 final size:47
Alignment explanation
Indices: 22855410--22855771 Score: 544
Period size: 49 Copynumber: 7.6 Consensus size: 47
22855400 CCCTTCGGGA
* * * * * *
22855410 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
22855457 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22855504 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
22855553 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22855600 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22855649 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22855698 CCTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22855746 CTTATCACATATATACACTTTCACAT
1 CTTATCACATATATACACTTTCACAT
22855772 ATGGGTTTAA
Statistics
Matches: 292, Mismatches: 18, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
47 111 0.38
48 42 0.14
49 135 0.46
50 4 0.01
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:22855589 original size:96 final size:96
Alignment explanation
Indices: 22855410--22855771 Score: 561
Period size: 96 Copynumber: 3.8 Consensus size: 96
22855400 CCCTTCGGGA
* * * * * * *
22855410 CTTATCACAT-T-TATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
22855473 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
22855504 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
22855569 ACTTTCACATTCATCACATCGGCCATTAAGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
22855600 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
22855665 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
22855698 CCTATTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 CTTA-TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
22855761 CACTTTCACAT
65 CACTTTCACAT
22855772 ATGGGTTTAA
Statistics
Matches: 247, Mismatches: 16, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
94 10 0.04
95 19 0.08
96 128 0.52
97 46 0.19
98 40 0.16
99 4 0.02
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:22858651 original size:45 final size:45
Alignment explanation
Indices: 22858602--22858770 Score: 205
Period size: 45 Copynumber: 3.8 Consensus size: 45
22858592 GGCCGGTTCG
* * * *
22858602 TCCATTTCTCTTCGGCATGGTACCGAACAGGACTAGAGGGCCTAT
1 TCCATTTCTCTTCGACATGATACCGAACAGGACTAGAAGGCTTAT
* * *
22858647 TCCATTTCTCTTCGACACGATACCGAACAGGACTCGATGGCTTAT
1 TCCATTTCTCTTCGACATGATACCGAACAGGACTAGAAGGCTTAT
* * * * *
22858692 TCCATTTCTCTTCGACGTCATACTGAACGGGGCTAGAAGGCTTAT
1 TCCATTTCTCTTCGACATGATACCGAACAGGACTAGAAGGCTTAT
*
22858737 TCCATTTCTCTTC-AGTATGATACCGAACAGGACT
1 TCCATTTCTCTTCGA-CATGATACCGAACAGGACT
22858771 TGAACTCTCC
Statistics
Matches: 103, Mismatches: 20, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
44 1 0.01
45 102 0.99
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.30
Consensus pattern (45 bp):
TCCATTTCTCTTCGACATGATACCGAACAGGACTAGAAGGCTTAT
Found at i:22860701 original size:29 final size:29
Alignment explanation
Indices: 22860667--22860724 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
22860657 GGTGATGGAG
22860667 ATTACATCTTGTTTACACAGTGATGATGT
1 ATTACATCTTGTTTACACAGTGATGATGT
*
22860696 ATTACATCTTGTTTACACTGTGATGATGT
1 ATTACATCTTGTTTACACAGTGATGATGT
22860725 TAAAAGCTAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.43
Consensus pattern (29 bp):
ATTACATCTTGTTTACACAGTGATGATGT
Found at i:22861091 original size:44 final size:44
Alignment explanation
Indices: 22861042--22861132 Score: 182
Period size: 44 Copynumber: 2.1 Consensus size: 44
22861032 TTCATCCATT
22861042 CATGAATCTATGAACTATATATAAAAGGGAGGCCCAAATTAACA
1 CATGAATCTATGAACTATATATAAAAGGGAGGCCCAAATTAACA
22861086 CATGAATCTATGAACTATATATAAAAGGGAGGCCCAAATTAACA
1 CATGAATCTATGAACTATATATAAAAGGGAGGCCCAAATTAACA
22861130 CAT
1 CAT
22861133 ACCTATACTA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.45, C:0.16, G:0.15, T:0.23
Consensus pattern (44 bp):
CATGAATCTATGAACTATATATAAAAGGGAGGCCCAAATTAACA
Found at i:22870716 original size:2 final size:2
Alignment explanation
Indices: 22870709--22870762 Score: 108
Period size: 2 Copynumber: 27.0 Consensus size: 2
22870699 TCAGTGTTAA
22870709 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
22870751 AG AG AG AG AG AG
1 AG AG AG AG AG AG
22870763 CTTAATTAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:22871223 original size:7 final size:7
Alignment explanation
Indices: 22871213--22871240 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
22871203 TTATAATTTT
22871213 AAATTAA
1 AAATTAA
22871220 AAATTAA
1 AAATTAA
22871227 AAATTAA
1 AAATTAA
22871234 AAATTAA
1 AAATTAA
22871241 TTTTTTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
AAATTAA
Found at i:22871275 original size:6 final size:6
Alignment explanation
Indices: 22871242--22871274 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
22871232 AAAAATTAAT
*
22871242 TTTTTA TTTTTA TTTTTA TTTTTA TTTGTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
22871275 GGACCATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (6 bp):
TTTTTA
Found at i:22886506 original size:46 final size:46
Alignment explanation
Indices: 22886454--22886629 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
22886444 TGGTTGAGCA
22886454 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
22886500 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
22886545 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
22886593 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
22886630 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 64 0.58
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:22886610 original size:93 final size:93
Alignment explanation
Indices: 22886451--22886621 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
22886441 GGATGGTTGA
* **
22886451 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
22886516 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
22886544 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
22886609 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
22886622 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:22893312 original size:19 final size:19
Alignment explanation
Indices: 22893247--22893314 Score: 68
Period size: 18 Copynumber: 3.7 Consensus size: 19
22893237 AATTGATCGG
* *
22893247 TTATCCAGTAACAGTC-AA
1 TTATTCAGTAACAATCAAA
* *
22893265 TTATTCAGTAAAAATCAGA
1 TTATTCAGTAACAATCAAA
* *
22893284 -TATACAGTAACAATTAAA
1 TTATTCAGTAACAATCAAA
22893302 TTATTCAGTAACA
1 TTATTCAGTAACA
22893315 GTCGATCTTT
Statistics
Matches: 39, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
18 27 0.69
19 12 0.31
ACGTcount: A:0.46, C:0.15, G:0.09, T:0.31
Consensus pattern (19 bp):
TTATTCAGTAACAATCAAA
Found at i:22896255 original size:12 final size:11
Alignment explanation
Indices: 22896233--22896271 Score: 53
Period size: 12 Copynumber: 3.5 Consensus size: 11
22896223 TTGAATAGGT
22896233 AATTGGTATTG
1 AATTGGTATTG
22896244 AATTGAGTATTG
1 AATTG-GTATTG
*
22896256 AATTTG-ATTG
1 AATTGGTATTG
22896266 AATTGG
1 AATTGG
22896272 ATATGGTATG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
10 9 0.36
11 6 0.24
12 10 0.40
ACGTcount: A:0.31, C:0.00, G:0.26, T:0.44
Consensus pattern (11 bp):
AATTGGTATTG
Found at i:22897858 original size:22 final size:23
Alignment explanation
Indices: 22897833--22897891 Score: 61
Period size: 23 Copynumber: 2.6 Consensus size: 23
22897823 CAACCAAATC
22897833 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
22897855 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
22897878 ACA-TCATCACATAT
1 A-ATTCAT-ACATAT
22897892 CTAAAACCAG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
22 6 0.19
23 18 0.58
24 7 0.23
ACGTcount: A:0.44, C:0.15, G:0.05, T:0.36
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:22905479 original size:78 final size:77
Alignment explanation
Indices: 22905325--22905479 Score: 202
Period size: 78 Copynumber: 2.0 Consensus size: 77
22905315 CCGAAGCAAT
* * * *
22905325 TGCAACGTTTCATTGAACTGTTTCTAGGAACTACTATGGTCATCATACAGAAGAATCAATGGATC
1 TGCAAAGTTTCATTGAACTGTTCCTAGGAACTACCATGGCCATCATACAGAAGAATCAATGGATC
*
22905390 AGATGACTGATG
66 AGACGACTGATG
** * * *
22905402 TGCAAAGTTTCATTGGTCTGTTCCTAGGAAGCTACCATGGCCTTCATACAGGATAATCAATGGAT
1 TGCAAAGTTTCATTGAACTGTTCCTAGGAA-CTACCATGGCCATCATACAGAAGAATCAATGGAT
*
22905467 CAGACGATTGATG
65 CAGACGACTGATG
22905480 CTTGCCATGG
Statistics
Matches: 66, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
77 26 0.39
78 40 0.61
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (77 bp):
TGCAAAGTTTCATTGAACTGTTCCTAGGAACTACCATGGCCATCATACAGAAGAATCAATGGATC
AGACGACTGATG
Found at i:22913328 original size:44 final size:45
Alignment explanation
Indices: 22913277--22913379 Score: 127
Period size: 44 Copynumber: 2.3 Consensus size: 45
22913267 TGTCTTTGAC
* * *
22913277 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATA-TATAAT
1 ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAAT
** *
22913321 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATA-TTATAAT
*
22913367 ATCGACTTACATG
1 ATGGACTTACATG
22913380 GCTCATTTCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
44 33 0.66
46 17 0.34
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.34
Consensus pattern (45 bp):
ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAAT
Found at i:22913382 original size:46 final size:44
Alignment explanation
Indices: 22913296--22913384 Score: 133
Period size: 46 Copynumber: 2.0 Consensus size: 44
22913286 CATGAATTAT
* *
22913296 TCCTGTCTCCAATGCCATATATAATATGGACTTACATGGCTCAA
1 TCCTGTCTCCAAAGCCATATATAATATCGACTTACATGGCTCAA
*
22913340 TCCTGTCTCCAAAGCCATATTTCTAATATCGACTTACATGGCTCA
1 TCCTGTCTCCAAAGCCATA--TATAATATCGACTTACATGGCTCA
22913385 TTTCTGTTCT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
44 18 0.45
46 22 0.55
ACGTcount: A:0.28, C:0.27, G:0.12, T:0.33
Consensus pattern (44 bp):
TCCTGTCTCCAAAGCCATATATAATATCGACTTACATGGCTCAA
Found at i:22919865 original size:78 final size:77
Alignment explanation
Indices: 22919734--22919882 Score: 226
Period size: 78 Copynumber: 1.9 Consensus size: 77
22919724 CGATTGTGAC
* * **
22919734 GTTTCATTGAACTATTTCTAGGAACTACTATGGTCATCATACAGGAGAATCAATGGATCAGGTGA
1 GTTTCATTGAACTATTTCTAGGAACTACCATGGCCATCATACAGGAGAATCAATGGATCAGACGA
22919799 TTGATGTGCAAA
66 TTGATGTGCAAA
* * *
22919811 GTTTCATTGGACTGTTTCTAGGAAGCTACCATGGCCATCATACAGGATAATCAATGGATCAGACG
1 GTTTCATTGAACTATTTCTAGGAA-CTACCATGGCCATCATACAGGAGAATCAATGGATCAGACG
22919876 ATTGATG
65 ATTGATG
22919883 CTTGCCATGG
Statistics
Matches: 64, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
77 22 0.34
78 42 0.66
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (77 bp):
GTTTCATTGAACTATTTCTAGGAACTACCATGGCCATCATACAGGAGAATCAATGGATCAGACGA
TTGATGTGCAAA
Found at i:22922372 original size:29 final size:28
Alignment explanation
Indices: 22922319--22922412 Score: 89
Period size: 29 Copynumber: 3.1 Consensus size: 28
22922309 TAACAATTAT
*
22922319 AATTACATTTTAAAATCTGAAAAATAAAAA
1 AATTAAATTTTAAAAT-T-AAAAATAAAAA
* **
22922349 AATTAAATTTCTAAAATTAAAAATACAGT
1 AATTAAATTT-TAAAATTAAAAATAAAAA
*
22922378 AATTAAATTTTAAATTTATAAAGAGTAAAAA
1 AATTAAATTTTAAAATTA-AAA-A-TAAAAA
22922409 AATT
1 AATT
22922413 GATAGTATAT
Statistics
Matches: 52, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
28 7 0.13
29 21 0.40
30 11 0.21
31 13 0.25
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.34
Consensus pattern (28 bp):
AATTAAATTTTAAAATTAAAAATAAAAA
Found at i:22923069 original size:30 final size:30
Alignment explanation
Indices: 22923020--22923078 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
22923010 CTTAACAAGT
22923020 AAATACCTCTAAAACAATAACAAAATTAAC
1 AAATACCTCTAAAACAATAACAAAATTAAC
* * *
22923050 AAATGCCTTTAAAATAATAACAAAATTAA
1 AAATACCTCTAAAACAATAACAAAATTAA
22923079 TAATAAAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.59, C:0.15, G:0.02, T:0.24
Consensus pattern (30 bp):
AAATACCTCTAAAACAATAACAAAATTAAC
Found at i:22927471 original size:31 final size:31
Alignment explanation
Indices: 22927412--22927467 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
22927402 TTTTTATTTT
22927412 TAAAATATTTAAAATTATTAATATATTAATA
1 TAAAATATTTAAAATTATTAATATATTAATA
*
22927443 TAAAATA-TTATAATT-TTAA-ATATTA
1 TAAAATATTTAAAATTATTAATATATTA
22927468 TTAAACATAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 6 0.25
29 4 0.17
30 7 0.29
31 7 0.29
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (31 bp):
TAAAATATTTAAAATTATTAATATATTAATA
Found at i:22927586 original size:13 final size:13
Alignment explanation
Indices: 22927569--22927612 Score: 54
Period size: 13 Copynumber: 3.3 Consensus size: 13
22927559 ATTTAAATTT
22927569 TATTTTAATAATAA
1 TATTTTAA-AATAA
22927583 -ATTTTAACAATAA
1 TATTTTAA-AATAA
*
22927596 TAATTTAAAATAA
1 TATTTTAAAATAA
22927609 TATT
1 TATT
22927613 CTTCACATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
13 20 0.77
14 6 0.23
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (13 bp):
TATTTTAAAATAA
Found at i:22930058 original size:21 final size:21
Alignment explanation
Indices: 22930032--22930074 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
22930022 GGCCGTGTAA
22930032 CTCATTGTTTGGATTTTGGGT
1 CTCATTGTTTGGATTTTGGGT
22930053 CTCATTGTTTGGATTTTGGGT
1 CTCATTGTTTGGATTTTGGGT
22930074 C
1 C
22930075 AACGGGCTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.09, C:0.12, G:0.28, T:0.51
Consensus pattern (21 bp):
CTCATTGTTTGGATTTTGGGT
Found at i:22932486 original size:36 final size:30
Alignment explanation
Indices: 22932380--22932475 Score: 156
Period size: 30 Copynumber: 3.2 Consensus size: 30
22932370 AGTTAGGCCA
*
22932380 TTTGGGCCACCAAATGGACCGCCTTCGCCT
1 TTTGGGCCACCAAGTGGACCGCCTTCGCCT
* **
22932410 TTTCGTTCACCAAGTGGACCGCCTTCGCCT
1 TTTGGGCCACCAAGTGGACCGCCTTCGCCT
22932440 TTTGGGCCACCAAGTGGACCGCCTTCGCCT
1 TTTGGGCCACCAAGTGGACCGCCTTCGCCT
22932470 TTTGGG
1 TTTGGG
22932476 ACTAGACCAC
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 59 1.00
ACGTcount: A:0.14, C:0.34, G:0.25, T:0.27
Consensus pattern (30 bp):
TTTGGGCCACCAAGTGGACCGCCTTCGCCT
Found at i:22940816 original size:23 final size:22
Alignment explanation
Indices: 22940764--22940816 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
22940754 TCCTCGTCTT
*
22940764 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
22940786 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
22940809 TTTCTTTT
1 TTTCTTTT
22940817 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:22950185 original size:12 final size:13
Alignment explanation
Indices: 22950168--22950204 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
22950158 GAACCGGACA
22950168 CGAACCGAA-CTC
1 CGAACCGAAGCTC
22950180 CGAACC-AAGCTC
1 CGAACCGAAGCTC
*
22950192 CGAACCGTAGCTC
1 CGAACCGAAGCTC
22950205 TGATGCCACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
11 2 0.09
12 15 0.68
13 5 0.23
ACGTcount: A:0.30, C:0.41, G:0.19, T:0.11
Consensus pattern (13 bp):
CGAACCGAAGCTC
Found at i:22954368 original size:16 final size:18
Alignment explanation
Indices: 22954349--22954382 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
22954339 TTAGAAACCT
22954349 ATTTTAA-TTTT-TTAAA
1 ATTTTAACTTTTATTAAA
22954365 ATTTTAACTTTTATTAAA
1 ATTTTAACTTTTATTAAA
22954383 CTATTTTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (18 bp):
ATTTTAACTTTTATTAAA
Found at i:22964851 original size:20 final size:20
Alignment explanation
Indices: 22964828--22964868 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
22964818 ATCAAGTTCT
22964828 GCATCACAACTTGAAGTCAC
1 GCATCACAACTTGAAGTCAC
22964848 GCATCACAACTTGAAGTCAC
1 GCATCACAACTTGAAGTCAC
22964868 G
1 G
22964869 AAACTGATCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.29, G:0.17, T:0.20
Consensus pattern (20 bp):
GCATCACAACTTGAAGTCAC
Found at i:22973209 original size:22 final size:22
Alignment explanation
Indices: 22973183--22973227 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
22973173 TTTTAATAAA
22973183 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
22973205 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
22973227 A
1 A
22973228 CACTCCCCTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:22976533 original size:22 final size:22
Alignment explanation
Indices: 22976508--22976552 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
22976498 TTTAATAAAA
22976508 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
22976530 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
22976552 A
1 A
22976553 CAAGCTTTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:22995274 original size:19 final size:18
Alignment explanation
Indices: 22995237--22995279 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
22995227 AAGAAATCAA
*
22995237 TAAATATATTTAGATATG
1 TAAATATATTTAAATATG
*
22995255 TAAATATTTCTTAAATATG
1 TAAATATAT-TTAAATATG
22995274 TAAATA
1 TAAATA
22995280 ATATATTTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.47, C:0.02, G:0.07, T:0.44
Consensus pattern (18 bp):
TAAATATATTTAAATATG
Found at i:22998500 original size:127 final size:126
Alignment explanation
Indices: 22998303--22998752 Score: 469
Period size: 127 Copynumber: 3.6 Consensus size: 126
22998293 TTTTCGTTCA
* * * * * * *
22998303 GCTAAAATACGCAATCTCCTTTGAAAATTTTGTCCAATTTTTTTTTAAAAATTAAAACGATGCAA
1 GCTAAAATACGGAATATCCTTTGGAAATTTCGTCC-ATATTTTTTTAAAAATTAAAATGAGGCAA
* *
22998368 TATTTCGTGTTTGGAAGGTTGGGAGGTCGTGCCCAAACGTGTTGGGCTTCAATTTTCCATTCG
65 TATTTCGTATTTGG-AGGTTGGGAGGTCGTGCCCAATCGTGTTGGGCTTCAATTTTCCATTCG
* * *
22998431 GCTAAAATATGGAATATCTTTTGGAAATTTCGTCCATATTTTTTTAAAAATTAAAATGAGCCAAT
1 GCTAAAATACGGAATATCCTTTGGAAATTTCGTCCATATTTTTTTAAAAATTAAAATGAGGCAAT
* * *
22998496 ATTTCGTA--T-----TTGGGA-GTTGTGCCCAATTGTGCTT-GGCTTCAATTTTCCATTCA
66 ATTTCGTATTTGGAGGTTGGGAGGTCGTGCCCAATCGTG-TTGGGCTTCAATTTTCCATTCG
**
22998549 GCTAAAATACGGAATATCCTTTGGAAATTTCGTCCAT-TTTTTAAAAAAAATTAAAATGAGGCAA
1 GCTAAAATACGGAATATCCTTTGGAAATTTCGTCCATATTTTT-TTAAAAATTAAAATGAGGCAA
* * * *
22998613 TATTTTGTATTTGGGGAGTTGGG-GAGTCGTGCCCAATCGTGCTGGGCTTCAATTTTCCATCCG
65 TATTTCGTATTTGGAG-GTTGGGAG-GTCGTGCCCAATCGTGTTGGGCTTCAATTTTCCATTCG
* ** * * * * *
22998676 ACTAAAATACATAATATCCTTTTGAAGTTTCAT-C-TATGTTTTCT-CAAATTAAAATGAGGCAA
1 GCTAAAATACGGAATATCCTTTGGAAATTTCGTCCATAT-TTTTTTAAAAATTAAAATGAGGCAA
*
22998738 TGTTTCGTATTTGGA
65 TATTTCGTATTTGGA
22998753 AATTCGATAA
Statistics
Matches: 269, Mismatches: 38, Indels: 33
0.79 0.11 0.10
Matches are distributed among these distances:
117 5 0.02
118 92 0.34
119 8 0.03
120 1 0.00
125 31 0.12
126 8 0.03
127 95 0.35
128 29 0.11
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (126 bp):
GCTAAAATACGGAATATCCTTTGGAAATTTCGTCCATATTTTTTTAAAAATTAAAATGAGGCAAT
ATTTCGTATTTGGAGGTTGGGAGGTCGTGCCCAATCGTGTTGGGCTTCAATTTTCCATTCG
Found at i:22998541 original size:118 final size:118
Alignment explanation
Indices: 22998386--22998751 Score: 384
Period size: 118 Copynumber: 3.0 Consensus size: 118
22998376 GTTTGGAAGG
* * *
22998386 TTGGGAGGTCGTGCCCAAACGTG-TTGGGCTTCAATTTTCCATTCGGCTAAAATATGGAATATCT
1 TTGGGA-GTTGTGCCCAATCGTGCTT-GGCTTCAATTTTCCATTCGGCTAAAATACGGAATATCT
* *
22998450 TTTGGAAATTTCGTCCATATTTTTTTAAAAATTAAAATGAGCCAATATTTCGTAT
64 TTTGGAAATTTCGTCCATATTTTTATAAAAATTAAAATGAGGCAATATTTCGTAT
* * *
22998505 TTGGGAGTTGTGCCCAATTGTGCTTGGCTTCAATTTTCCATTCAGCTAAAATACGGAATATCCTT
1 TTGGGAGTTGTGCCCAATCGTGCTTGGCTTCAATTTTCCATTCGGCTAAAATACGGAATATCTTT
* *
22998570 TGGAAATTTCGTCCAT-TTTTTAAAAAAAATTAAAATGAGGCAATATTTTGTAT
66 TGGAAATTTCGTCCATATTTTT-ATAAAAATTAAAATGAGGCAATATTTCGTAT
* * * **
22998623 TTGGGGAGTTGGGGAGTCGTGCCCAATCGTGCTGGGCTTCAATTTTCCATCCGACTAAAATACAT
1 TT-GGGAG-T------T-GTGCCCAATCGTGCTTGGCTTCAATTTTCCATTCGGCTAAAATACGG
* * * * *
22998688 AATATCCTTTT-GAAGTTTCAT-C-TATGTTTTCT-CAAATTAAAATGAGGCAATGTTTCGTAT
57 AATAT-CTTTTGGAAATTTCGTCCATAT-TTTTATAAAAATTAAAATGAGGCAATATTTCGTAT
22998748 TTGG
1 TTGG
22998752 AAATTCGATA
Statistics
Matches: 208, Mismatches: 25, Indels: 23
0.81 0.10 0.09
Matches are distributed among these distances:
117 5 0.02
118 95 0.46
119 13 0.06
120 1 0.00
124 2 0.01
125 28 0.13
126 3 0.01
127 57 0.27
128 4 0.02
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (118 bp):
TTGGGAGTTGTGCCCAATCGTGCTTGGCTTCAATTTTCCATTCGGCTAAAATACGGAATATCTTT
TGGAAATTTCGTCCATATTTTTATAAAAATTAAAATGAGGCAATATTTCGTAT
Found at i:23001114 original size:31 final size:30
Alignment explanation
Indices: 23001065--23001132 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 30
23001055 ACTTTTATAT
23001065 ATAATTATTTTACTTCATA-AATCTTAAATTC
1 ATAATTATTTTACTTCATACAA-C-TAAATTC
*
23001096 ATAATTCATTTTTC-TCATACTAACTAAATTC
1 ATAATT-ATTTTACTTCATAC-AACTAAATTC
23001127 ATAATT
1 ATAATT
23001133 TAGTTCATAC
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
31 24 0.73
32 7 0.21
33 2 0.06
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.47
Consensus pattern (30 bp):
ATAATTATTTTACTTCATACAACTAAATTC
Found at i:23002340 original size:14 final size:14
Alignment explanation
Indices: 23002316--23002348 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
23002306 TCCCTGCTTC
23002316 GTTTCTGTTTCTTTT
1 GTTTCTGTTTC-TTT
23002331 GTTT-TGTTTCTTT
1 GTTTCTGTTTCTTT
23002344 GTTTC
1 GTTTC
23002349 CTTAATTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 7 0.41
14 6 0.35
15 4 0.24
ACGTcount: A:0.00, C:0.12, G:0.15, T:0.73
Consensus pattern (14 bp):
GTTTCTGTTTCTTT
Found at i:23002679 original size:15 final size:14
Alignment explanation
Indices: 23002661--23002691 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
23002651 TTAATTTATT
23002661 TAATAATAATGCTAA
1 TAATAATAAT-CTAA
23002676 TAATAATAATCTAA
1 TAATAATAATCTAA
23002690 TA
1 TA
23002692 TAAAACCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.35
Consensus pattern (14 bp):
TAATAATAATCTAA
Found at i:23002702 original size:21 final size:20
Alignment explanation
Indices: 23002678--23002746 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 20
23002668 AATGCTAATA
23002678 ATAATAATCTAATATAAAACC
1 ATAATAAT-TAATATAAAACC
* **
23002699 ATAAT-GTTAAT-TAATAATT
1 ATAATAATTAATATAA-AACC
23002718 ATAATAATTTAATATAAAACC
1 ATAATAA-TTAATATAAAACC
23002739 ATAATAAT
1 ATAATAAT
23002747 AATCATTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
18 3 0.08
19 11 0.29
20 2 0.05
21 19 0.50
22 3 0.08
ACGTcount: A:0.55, C:0.07, G:0.01, T:0.36
Consensus pattern (20 bp):
ATAATAATTAATATAAAACC
Found at i:23005848 original size:131 final size:131
Alignment explanation
Indices: 23005676--23005956 Score: 287
Period size: 131 Copynumber: 2.1 Consensus size: 131
23005666 AACATCGGAC
* * **
23005676 ATCGCCTTCGTTTTGAAAGGTTTTTAATAAACATGAATGAAAACCTAAAGGAATATTAGATTGTT
1 ATCGCCTTCGTTTT-AAAGGTTTTTAATAAACACGAATGAAAACCTAAAGGAACATTAGATTACT
* * * ***
23005741 TTGAGCAAACGAGAAATCACAACCCAGCTCGATAGGGCATGATTCC-CGAATTGTTAAAAATCGA
65 TTGAGCAAACGAGAAATCACAACCCAACACGATAGGGCACGATTCCGCGAATTACCAAAAATCGA
23005805 AT
130 AT
* * ** ** * * *
23005807 ATTGCCTTCGTTTTAAAGGATTTTTAGA-AGACACGGGTGAAATTCTAAAGGGACCTTCGATTAC
1 ATCGCCTTCGTTTTAAAGG-TTTTTA-ATAAACACGAATGAAAACCTAAAGGAACATTAGATTAC
* ** * **
23005871 TTTGAGCAAACGAGATATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTACCAAGTATCG
64 TTTGAGCAAACGAGAAATCACAACCCAACACGATAGGGCACGATTCCGCGAATTACCAAAAATCG
23005936 AAT
129 AAT
*
23005939 ATCGCTTTCGTTTTAAAG
1 ATCGCCTTCGTTTTAAAG
23005957 AATACCTACA
Statistics
Matches: 120, Mismatches: 27, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
130 5 0.04
131 83 0.69
132 32 0.27
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.29
Consensus pattern (131 bp):
ATCGCCTTCGTTTTAAAGGTTTTTAATAAACACGAATGAAAACCTAAAGGAACATTAGATTACTT
TGAGCAAACGAGAAATCACAACCCAACACGATAGGGCACGATTCCGCGAATTACCAAAAATCGAA
T
Done.