Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 75 of 276
Found at i:23008385 original size:44 final size:44
Alignment explanation
Indices: 23008337--23008665 Score: 303
Period size: 44 Copynumber: 7.5 Consensus size: 44
23008327 GTTGTTTTCA
* * * *
23008337 ATCTGCTCTCTGCCAATATAAATACTCCAAATCTGTCATCTTCG
1 ATCTGCTCTCCGCCAATACAGAGACTCCAAATCTGTCATCTTCG
* * * *
23008381 ATCTGCTCTCTGTCAACACAGAGA-TGCCAAATCTGTCATCTTCA
1 ATCTGCTCTCCGCCAATACAGAGACT-CCAAATCTGTCATCTTCG
* * * *
23008425 ATCTGCTCTCCGCTACTACAGAGA-TGGCAAATCTGTTAT-TTCG
1 ATCTGCTCTCCGCCAATACAGAGACT-CCAAATCTGTCATCTTCG
* * **
23008468 ATCTGCTCTCCGCCACTACAGA-AATGCCAAATCTGTTGTCTTCG
1 ATCTGCTCTCCGCCAATACAGAGACT-CCAAATCTGTCATCTTCG
* * * * *
23008512 ATCTGCTCTCCACCACTACAGAGACGCCAAATCTG-CTATATTTG
1 ATCTGCTCTCCGCCAATACAGAGACTCCAAATCTGTC-ATCTTCG
* *
23008556 ATCTGCTCTCCGCCAATACAGAGACGCCAAATCTG-CTATCTTCT
1 ATCTGCTCTCCGCCAATACAGAGACTCCAAATCTGTC-ATCTTCG
* * * *
23008600 ATCTACTCTCCGCCAACACAAAGACGCCAAATCTG-CTATCTTCG
1 ATCTGCTCTCCGCCAATACAGAGACTCCAAATCTGTC-ATCTTCG
*
23008644 ATCTGCTCTCCGCCAACACAGA
1 ATCTGCTCTCCGCCAATACAGA
23008666 AACGCTATCT
Statistics
Matches: 245, Mismatches: 35, Indels: 10
0.84 0.12 0.03
Matches are distributed among these distances:
42 1 0.00
43 38 0.16
44 205 0.84
45 1 0.00
ACGTcount: A:0.26, C:0.32, G:0.14, T:0.28
Consensus pattern (44 bp):
ATCTGCTCTCCGCCAATACAGAGACTCCAAATCTGTCATCTTCG
Found at i:23008521 original size:131 final size:131
Alignment explanation
Indices: 23008363--23008670 Score: 354
Period size: 131 Copynumber: 2.3 Consensus size: 131
23008353 TATAAATACT
* * * *
23008363 CCAAATCTGTCATCTTCGATCTGCTCTCTGTCAACACAGAGATGCCAAATCTG-TCATCTTCAAT
1 CCAAATCTGTTATCTTCGATCTGCTCTC-GACAACACAGAGACGCCAAATCTGCT-ATATTCAAT
* * * * * *
23008427 CTGCTCTCCGCTACTACAGAGATGGCAAATCTGTTAT-TTCGATCTGCTCTCCGCC-ACTACAGA
64 CTGCTCTCCGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTACTCTCCGCCAAC-ACA-A
*
23008490 A-ATG
127 AGACG
* * * **
23008494 CCAAATCTGTTGTCTTCGATCTGCTCTCCACCACTACAGAGACGCCAAATCTGCTATATTTGATC
1 CCAAATCTGTTATCTTCGATCTGCTCTCGACAAC-ACAGAGACGCCAAATCTGCTATATTCAATC
*
23008559 TGCTCTCCGCCAATACAGAGACGCCAAATCTGCTATCTTCTATCTACTCTCCGCCAACACAAAGA
65 TGCTCTCCGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTACTCTCCGCCAACACAAAGA
23008624 CG
130 CG
* * *
23008626 CCAAATCTGCTATCTTCGATCTGCTCTCCGCCAACACAGAAACGC
1 CCAAATCTGTTATCTTCGATCTGCTCT-CGACAACACAGAGACGC
23008671 TATCTTCGAT
Statistics
Matches: 148, Mismatches: 23, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
130 3 0.02
131 83 0.56
132 56 0.38
133 6 0.04
ACGTcount: A:0.26, C:0.32, G:0.14, T:0.27
Consensus pattern (131 bp):
CCAAATCTGTTATCTTCGATCTGCTCTCGACAACACAGAGACGCCAAATCTGCTATATTCAATCT
GCTCTCCGCCAATACAGAGACGCCAAATCTGCTATCTTCGATCTACTCTCCGCCAACACAAAGAC
G
Found at i:23008598 original size:88 final size:86
Alignment explanation
Indices: 23008333--23008670 Score: 349
Period size: 88 Copynumber: 3.9 Consensus size: 86
23008323 ATCTGTTGTT
* * * * * * * * *
23008333 TTCAATCTGCTCTCTGCCAATATAAATACTCCAAATCTGTCATCTTCGATCTGCTCTCTGTCAAC
1 TTCAATCTGCTCTCCGCCACTACAGAGACGCCAAATCTGT-ATATTCGATCTGCTCTCCGCCAAC
* *
23008398 ACAGAGATGCCAAATCTGTCATC
65 ACAGAAACGCCAAATCTGT-ATC
* * *
23008421 TTCAATCTGCTCTCCGCTACTACAGAGATGGCAAATCTGT-TATTTCGATCTGCTCTCCGCC-AC
1 TTCAATCTGCTCTCCGCCACTACAGAGACGCCAAATCTGTATA-TTCGATCTGCTCTCCGCCAAC
* *
23008484 TACAGAAATGCCAAATCTGTTGTC
65 -ACAGAAACGCCAAATCTG-TATC
* * * *
23008508 TTCGATCTGCTCTCCACCACTACAGAGACGCCAAATCTGCTATATTTGATCTGCTCTCCGCCAAT
1 TTCAATCTGCTCTCCGCCACTACAGAGACGCCAAATCTG-TATATTCGATCTGCTCTCCGCCAAC
*
23008573 ACAGAGACGCCAAATCTGCTATC
65 ACAGAAACGCCAAATCTG-TATC
* * * *
23008596 TTCTATCTACTCTCCGCCAAC-ACAAAGACGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCAA
1 TTCAATCTGCTCTCCGCC-ACTACAGAGACGCCAAATCTG-TATATTCGATCTGCTCTCCGCCAA
23008660 CACAGAAACGC
64 CACAGAAACGC
23008671 TATCTTCGAT
Statistics
Matches: 210, Mismatches: 33, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
86 3 0.01
87 69 0.33
88 133 0.63
89 5 0.02
ACGTcount: A:0.26, C:0.32, G:0.14, T:0.28
Consensus pattern (86 bp):
TTCAATCTGCTCTCCGCCACTACAGAGACGCCAAATCTGTATATTCGATCTGCTCTCCGCCAACA
CAGAAACGCCAAATCTGTATC
Found at i:23008633 original size:175 final size:176
Alignment explanation
Indices: 23008322--23008667 Score: 423
Period size: 175 Copynumber: 2.0 Consensus size: 176
23008312 CGGGAACACC
* ** * * * *
23008322 AATCTGTTGTTTTCAATCTGCTCTCTGCCAATATAAATACTCCAAATCTGTCATCTTCGATCTGC
1 AATCTGTTGTCTTCAATCTGCTCTCCACCAATACAAAGACGCCAAATCTGTCATATTCGATCTGC
* * * * * * * *
23008387 TCTCTGTCAACACAGAGATGCCAAATCTGTCATCTTCAATCTGCTCTCCGCTACTACAGAGATGG
66 TCTCCGCCAACACAGAGACGCCAAATCTGTCATCTTCAATCTACTCTCCGCAACTACAAAGACGC
*
23008452 CAAATCTGTTAT-TTCGATCTGCTCTCCGCC-ACTACAGAAATGCCA
131 CAAATCTGCTATCTTCGATCTGCTCTCCGCCAAC-ACAGAAATGCCA
* * * *
23008497 AATCTGTTGTCTTCGATCTGCTCTCCACCACTACAGAGACGCCAAATCTG-CTATATTTGATCTG
1 AATCTGTTGTCTTCAATCTGCTCTCCACCAATACAAAGACGCCAAATCTGTC-ATATTCGATCTG
* *
23008561 CTCTCCGCCAATACAGAGACGCCAAATCTG-CTATCTTCTATCTACTCTCCGCCAAC-ACAAAGA
65 CTCTCCGCCAACACAGAGACGCCAAATCTGTC-ATCTTCAATCTACTCTCCG-CAACTACAAAGA
23008624 CGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCAACACAGAAA
128 CGCCAAATCTGCTATCTTCGATCTGCTCTCCGCCAACACAGAAA
23008668 CGCTATCTTC
Statistics
Matches: 144, Mismatches: 22, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
174 2 0.01
175 112 0.78
176 28 0.19
177 2 0.01
ACGTcount: A:0.26, C:0.31, G:0.14, T:0.29
Consensus pattern (176 bp):
AATCTGTTGTCTTCAATCTGCTCTCCACCAATACAAAGACGCCAAATCTGTCATATTCGATCTGC
TCTCCGCCAACACAGAGACGCCAAATCTGTCATCTTCAATCTACTCTCCGCAACTACAAAGACGC
CAAATCTGCTATCTTCGATCTGCTCTCCGCCAACACAGAAATGCCA
Found at i:23008674 original size:35 final size:35
Alignment explanation
Indices: 23008634--23009545 Score: 1815
Period size: 35 Copynumber: 26.1 Consensus size: 35
23008624 CGCCAAATCT
23008634 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
1 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
23008669 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
1 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
23008704 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
1 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
23008739 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
1 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
23008774 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
1 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
23008809 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
1 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
23008844 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
1 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
23008879 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
1 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
23008914 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
1 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
23008949 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
1 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
23008984 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
1 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
23009019 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
1 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
23009054 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
1 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
23009089 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
1 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
23009124 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
1 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
23009159 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
1 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
23009194 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
1 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
23009229 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
1 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
23009264 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
1 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
23009299 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
1 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
23009334 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
1 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
23009369 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
1 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
23009404 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
1 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
23009439 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
1 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
23009474 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
1 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
*
23009509 GCTATCTTCGATCTGCTCTCCGCCAACACAGAGAC
1 GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
23009544 GC
1 GC
23009546 CAAATCTGCT
Statistics
Matches: 876, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 876 1.00
ACGTcount: A:0.26, C:0.37, G:0.14, T:0.23
Consensus pattern (35 bp):
GCTATCTTCGATCTGCTCTCCGCCAACACAGAAAC
Found at i:23009572 original size:44 final size:44
Alignment explanation
Indices: 23009509--23009729 Score: 334
Period size: 44 Copynumber: 5.0 Consensus size: 44
23009499 ACACAGAAAC
*
23009509 GCTATCTTCGATCTGCTCTCCGCCAACACAGAGACGCCAAATCT
1 GCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCAAATCT
* *
23009553 GCTATCTTCGATCTGCTCTCCGCTAATACAGAAACGCCAAATCT
1 GCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCAAATCT
* *
23009597 GCTATTTTCGATCTGCTCTCCGCCAATATAGAGACGCCAAATCT
1 GCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCAAATCT
* * *
23009641 GCTATCTTCGATTTGCTCTCCGCCACTACAGAGATGCCAAATCT
1 GCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCAAATCT
* * * *
23009685 GCTATATTCGATTTGCTCTCCGCTATTACAGAGACGCCAAATCT
1 GCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCAAATCT
23009729 G
1 G
23009730 TCTGGTCTTG
Statistics
Matches: 161, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 161 1.00
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.28
Consensus pattern (44 bp):
GCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCAAATCT
Found at i:23010640 original size:132 final size:131
Alignment explanation
Indices: 23009925--23011111 Score: 1415
Period size: 132 Copynumber: 9.0 Consensus size: 131
23009915 TACAATCTTC
* * * * * *
23009925 AGCCCACTTCACTACAACTTTAGGGAGCTAGGACT--T-GCTTAAATCTACTTCGCTGCATCTTC
1 AGCCTACTCCACTACAACTTTAGGGAGCTAGG-TTGGTGGCTTAAATCTGCTTCACTGCAACTTC
* * * * * * *
23009987 AGGAAGC-CAAGATTTATCATCTTTGATTTG-TCTCACTGCAACTTCAGGGAGACGAGATCTACA
65 AGGAAGCTC-AGATTCACCGTCTTCGATCTGCT-TCACTGCAACTTCAGGGAAACAAGATCTA-A
* *
23010050 ATCCTC
127 AT-TTT
* * * *
23010056 AGCCTACTCCACTACAACTTTAGAGAGCTAGGACT--T-GCTTAAATCTGCTTTACTGCAACATC
1 AGCCTACTCCACTACAACTTTAGGGAGCTAGG-TTGGTGGCTTAAATCTGCTTCACTGCAACTTC
* **
23010118 AGGAAGC-CTAGATTCGCCGTCTTCGATCTGCCCCACTGCAA-TATCAGGGAAACAAGATCTATA
65 AGGAAGCTC-AGATTCACCGTCTTCGATCTGCTTCACTGCAACT-TCAGGGAAACAAGATCTA-A
*
23010181 ATCTTC
127 AT-TTT
* * * *
23010187 AGCCTACTCCACTACAACCTTAGGGAGCTA-G--GAT-GCTTAAATCTGCTTCGCTGCATCTTCA
1 AGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCA
* * * * * * * ** *
23010248 GGAAGC-CAATATTTATCGTCTTTGATTTGCCTCACTGCAACTTCAAGGAGGCGAGATCTACAAT
66 GGAAGCTC-AGATTCACCGTCTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCTA-AAT
*
23010312 CTTC
129 -TTT
* * * *
23010316 AGCCTACTCCACTACAACTTTAGAGAGCTAGGACT--T-GCTTAAATCTACTTCACTGCAACATC
1 AGCCTACTCCACTACAACTTTAGGGAGCTAGG-TTGGTGGCTTAAATCTGCTTCACTGCAACTTC
* ** *
23010378 AGGAAGC-CTAGATTCGCCGTCTTCGATCTGCCCCACTGCAA-TCTCAAGGAAACAAGATCTATA
65 AGGAAGCTC-AGATTCACCGTCTTCGATCTGCTTCACTGCAACT-TCAGGGAAACAAGATCTA-A
*
23010441 ATCTTC
127 AT-TTT
* * *
23010447 AGCCTATTCCACTACAACCTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCA
1 AGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCA
* *
23010512 GGAAGCTCAGATTCACCATCTTCGATCTGTTTCACTGCAACTTCAGGGAAACAAGATCTGAAATT
66 GGAAGCTCAGATTCACCGTCTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCT-AAATT
23010577 TT
130 TT
*
23010579 AGCCTACTCCACTACAACTTTAGGAAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCA
1 AGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCA
* * *
23010644 AGAAGCTCAGATTCACCGTCTTCGATCTGCTTCATTGTAACTTCAGGGAAACAAGATCTAAAATT
66 GGAAGCTCAGATTCACCGTCTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCT-AAATT
23010709 TT
130 TT
23010711 AGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCA
1 AGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCA
* * *
23010776 AGAAGCTCAGATTCACCGTCTTCGATCTGCTTCATTGTAACTTCAGGGAAACAAGATCTAAAATT
66 GGAAGCTCAGATTCACCGTCTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCT-AAATT
23010841 TT
130 TT
23010843 AGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCA
1 AGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCA
* * *
23010908 AGAAGCTCAGATTCACCGTCTTCGATCTGCTTCATTGTAACTTCAGGGAAACAAGATCTAAAATT
66 GGAAGCTCAGATTCACCGTCTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCT-AAATT
23010973 TT
130 TT
*
23010975 AGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTTA
1 AGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCA
* * * * *
23011040 GGAAGCTAAAATTCGCCGTCTTCGATCTGCTTCACTTCAATTTCAGGGAAACAAGATCTAAAATT
66 GGAAGCTCAGATTCACCGTCTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCT-AAATT
23011105 TT
130 TT
23011107 AGCCT
1 AGCCT
23011112 CATAGGCCCA
Statistics
Matches: 949, Mismatches: 91, Indels: 31
0.89 0.08 0.03
Matches are distributed among these distances:
129 105 0.11
130 6 0.01
131 242 0.26
132 516 0.54
133 77 0.08
134 3 0.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (131 bp):
AGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCA
GGAAGCTCAGATTCACCGTCTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCTAAATTT
T
Found at i:23012346 original size:13 final size:14
Alignment explanation
Indices: 23012330--23012361 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
23012320 TCTTTCCTTC
23012330 TTTTTATTTTATT-
1 TTTTTATTTTATTA
23012343 TTTTTATTTTATTA
1 TTTTTATTTTATTA
23012357 TTTTT
1 TTTTT
23012362 TGAAGATCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 13 0.72
14 5 0.28
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (14 bp):
TTTTTATTTTATTA
Found at i:23014937 original size:5 final size:5
Alignment explanation
Indices: 23014927--23014963 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
23014917 AATGCAAATG
23014927 ATGCA ATGCA ATGCA ATGCAA ATG-- ATGCA ATGCA ATG
1 ATGCA ATGCA ATGCA ATGC-A ATGCA ATGCA ATGCA ATG
23014964 TAAATGCATG
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
3 3 0.10
5 22 0.76
6 4 0.14
ACGTcount: A:0.41, C:0.16, G:0.22, T:0.22
Consensus pattern (5 bp):
ATGCA
Found at i:23014941 original size:19 final size:19
Alignment explanation
Indices: 23014932--23014969 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
23014922 AAATGATGCA
23014932 ATGCAATGCAATGCAAATG
1 ATGCAATGCAATGCAAATG
*
23014951 ATGCAATGCAATGTAAATG
1 ATGCAATGCAATGCAAATG
23014970 CATGGGATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.13, G:0.21, T:0.24
Consensus pattern (19 bp):
ATGCAATGCAATGCAAATG
Found at i:23014949 original size:24 final size:24
Alignment explanation
Indices: 23014917--23014963 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
23014907 TGGGAAATTT
23014917 AATGCAAATGATGCAATGCAATGC
1 AATGCAAATGATGCAATGCAATGC
23014941 AATGCAAATGATGCAATGCAATG
1 AATGCAAATGATGCAATGCAATG
23014964 TAAATGCATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.43, C:0.15, G:0.21, T:0.21
Consensus pattern (24 bp):
AATGCAAATGATGCAATGCAATGC
Found at i:23016751 original size:131 final size:132
Alignment explanation
Indices: 23016582--23016827 Score: 291
Period size: 131 Copynumber: 1.9 Consensus size: 132
23016572 ATCAGACATC
* * **
23016582 GCCTTCGTTTTGAAAGGTTTTTAATAAACATGAATGAAAACCTAAAGGAATATTAGATTGTTTTG
1 GCCTTCGTTTTGAAAGGTTTTTAATAAACACGAATGAAAACCTAAAGGAACATTAGATTACTTTG
* ** *
23016647 AGCAAACGAGAAATCACAACCCAGCTTGATAGGGCATGATTCC-CGAATTGTTAAACACCGAATA
66 AGCAAACGAGAAATCACAACCCAACACGATAGGGCACGATTCCGCGAATTGTTAAACACCGAATA
23016711 TT
131 TT
** ** * * *
23016713 GCCTTCGTTTT-AAAGGATTTTTAGA-AAACACGGGTGAAATTCTAAAGGGACCTTCGATTACTT
1 GCCTTCGTTTTGAAAGG-TTTTTA-ATAAACACGAATGAAAACCTAAAGGAACATTAGATTACTT
** *
23016776 TGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATT
64 TGAGCAAACGAGAAATCACAACCCAACACGATAGGGCACGATTCCGCGAATT
23016828 ACCAAGTATC
Statistics
Matches: 94, Mismatches: 18, Indels: 5
0.80 0.15 0.04
Matches are distributed among these distances:
130 5 0.05
131 82 0.87
132 7 0.07
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.28
Consensus pattern (132 bp):
GCCTTCGTTTTGAAAGGTTTTTAATAAACACGAATGAAAACCTAAAGGAACATTAGATTACTTTG
AGCAAACGAGAAATCACAACCCAACACGATAGGGCACGATTCCGCGAATTGTTAAACACCGAATA
TT
Found at i:23019270 original size:11 final size:9
Alignment explanation
Indices: 23019240--23019282 Score: 52
Period size: 9 Copynumber: 4.6 Consensus size: 9
23019230 TTTTAAGTAT
23019240 TATATATATG
1 TATAT-TATG
23019250 TATA-TATG
1 TATATTATG
23019258 TATACTTTATG
1 TATA--TTATG
23019269 TATATTATG
1 TATATTATG
23019278 TATAT
1 TATAT
23019283 ATTTTTATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
8 8 0.27
9 10 0.33
10 4 0.13
11 8 0.27
ACGTcount: A:0.35, C:0.02, G:0.09, T:0.53
Consensus pattern (9 bp):
TATATTATG
Found at i:23019296 original size:23 final size:26
Alignment explanation
Indices: 23019240--23019333 Score: 79
Period size: 28 Copynumber: 3.5 Consensus size: 26
23019230 TTTTAAGTAT
*
23019240 TATATATATGTATATATGTATACTTTAT-G
1 TATAT-TATGTATATA--TATA-TTTATAA
23019269 TATATTATGTATATAT-T-TTTATAA
1 TATATTATGTATATATATATTTATAA
*
23019293 -ATATTATATGTATATATATATTTTTAA
1 TATA-T-TATGTATATATATATTTATAA
*
23019320 TATATTATGCATAT
1 TATATTATGTATAT
23019334 TGTGTACATA
Statistics
Matches: 56, Mismatches: 3, Indels: 15
0.76 0.04 0.20
Matches are distributed among these distances:
23 8 0.14
24 1 0.02
25 12 0.21
26 10 0.18
27 7 0.12
28 13 0.23
29 5 0.09
ACGTcount: A:0.37, C:0.02, G:0.06, T:0.54
Consensus pattern (26 bp):
TATATTATGTATATATATATTTATAA
Found at i:23019786 original size:18 final size:18
Alignment explanation
Indices: 23019765--23019806 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
23019755 ATATTCTTAC
23019765 TATTATCATTACTATAT-T
1 TATTATCATTACTAT-TGT
*
23019783 TATTATCATTATTATTGT
1 TATTATCATTACTATTGT
23019801 TATTAT
1 TATTAT
23019807 TTTTATCTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 1 0.05
18 21 0.95
ACGTcount: A:0.31, C:0.07, G:0.02, T:0.60
Consensus pattern (18 bp):
TATTATCATTACTATTGT
Found at i:23025111 original size:9 final size:8
Alignment explanation
Indices: 23025095--23025204 Score: 52
Period size: 8 Copynumber: 13.9 Consensus size: 8
23025085 TTTATATGTT
23025095 AATTTAAA
1 AATTTAAA
23025103 AATTATAAA
1 AATT-TAAA
23025112 AATATTCAAAAA
1 AAT-TT---AAA
*
23025124 AAATT-AA
1 AATTTAAA
23025131 AATTTAAA
1 AATTTAAA
23025139 AA--TAAA
1 AATTTAAA
**
23025145 AAAATAAA
1 AATTTAAA
*
23025153 AA-ATAAA
1 AATTTAAA
* *
23025160 AAATAAAA
1 AATTTAAA
23025168 AATTT-AA
1 AATTTAAA
*
23025175 AATTTAGA
1 AATTTAAA
*
23025183 AA-TAAAA
1 AATTTAAA
*
23025190 AACTTAAA
1 AATTTAAA
23025198 AATTTAA
1 AATTTAA
23025205 TATTTAATAT
Statistics
Matches: 80, Mismatches: 11, Indels: 22
0.71 0.10 0.19
Matches are distributed among these distances:
6 6 0.08
7 25 0.31
8 33 0.41
9 8 0.10
10 1 0.01
11 2 0.03
12 5 0.06
ACGTcount: A:0.70, C:0.02, G:0.01, T:0.27
Consensus pattern (8 bp):
AATTTAAA
Found at i:23025137 original size:7 final size:7
Alignment explanation
Indices: 23025122--23025201 Score: 61
Period size: 7 Copynumber: 11.0 Consensus size: 7
23025112 AATATTCAAA
23025122 AAAAATT
1 AAAAATT
*
23025129 AAAATTT
1 AAAAATT
*
23025136 AAAAATAA
1 AAAAAT-T
*
23025144 AAAAATA
1 AAAAATT
*
23025151 AAAAATA
1 AAAAATT
*
23025158 AAAAATA
1 AAAAATT
23025165 AAAAATTT
1 AAAAA-TT
*
23025173 AAAATTT
1 AAAAATT
* *
23025180 AGAAATA
1 AAAAATT
23025187 AAAAACTT
1 AAAAA-TT
23025195 AAAAATT
1 AAAAATT
23025202 TAATATTTAA
Statistics
Matches: 60, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
7 43 0.72
8 17 0.28
ACGTcount: A:0.72, C:0.01, G:0.01, T:0.25
Consensus pattern (7 bp):
AAAAATT
Found at i:23025145 original size:22 final size:22
Alignment explanation
Indices: 23025120--23025204 Score: 107
Period size: 22 Copynumber: 3.8 Consensus size: 22
23025110 AAAATATTCA
23025120 AAAAAAATTAAAATTTAAAAAT
1 AAAAAAATTAAAATTTAAAAAT
* * *
23025142 AAAAAAATAAAAAATAAAAAAT
1 AAAAAAATTAAAATTTAAAAAT
* *
23025164 AAAAAATTTAAAATTTAGAAAT
1 AAAAAAATTAAAATTTAAAAAT
*
23025186 AAAAAACTTAAAAATTTAA
1 AAAAAAATT-AAAATTTAA
23025205 TATTTAATAT
Statistics
Matches: 52, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
22 44 0.85
23 8 0.15
ACGTcount: A:0.73, C:0.01, G:0.01, T:0.25
Consensus pattern (22 bp):
AAAAAAATTAAAATTTAAAAAT
Found at i:23025146 original size:6 final size:7
Alignment explanation
Indices: 23025121--23025170 Score: 64
Period size: 7 Copynumber: 7.0 Consensus size: 7
23025111 AAATATTCAA
23025121 AAAAAAT
1 AAAAAAT
* *
23025128 TAAAATT
1 AAAAAAT
*
23025135 TAAAAAT
1 AAAAAAT
23025142 AAAAAAAT
1 -AAAAAAT
23025150 AAAAAAT
1 AAAAAAT
23025157 AAAAAAT
1 AAAAAAT
23025164 AAAAAAT
1 AAAAAAT
23025171 TTAAAATTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
7 32 0.84
8 6 0.16
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (7 bp):
AAAAAAT
Found at i:23025201 original size:30 final size:29
Alignment explanation
Indices: 23025153--23025210 Score: 89
Period size: 30 Copynumber: 2.0 Consensus size: 29
23025143 AAAAAATAAA
23025153 AAATAAAAAATAAAAAATTTAAAATTTAG
1 AAATAAAAAATAAAAAATTTAAAATTTAG
* *
23025182 AAATAAAAAACTTAAAAATTTAATATTTA
1 AAATAAAAAA-TAAAAAATTTAAAATTTA
23025211 ATATTTTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 10 0.38
30 16 0.62
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (29 bp):
AAATAAAAAATAAAAAATTTAAAATTTAG
Found at i:23025211 original size:15 final size:15
Alignment explanation
Indices: 23025121--23025211 Score: 58
Period size: 15 Copynumber: 6.1 Consensus size: 15
23025111 AAATATTCAA
*
23025121 AAAAAATTAAAATTT
1 AAAAATTTAAAATTT
* **
23025136 AAAAA-TAAAAAAAT
1 AAAAATTTAAAATTT
* * * *
23025150 AAAAAATAAAAAATA
1 AAAAATTTAAAATTT
23025165 AAAAATTTAAAATTT
1 AAAAATTTAAAATTT
* ** *
23025180 AGAAATAAAAAACTT
1 AAAAATTTAAAATTT
*
23025195 AAAAATTTAATATTT
1 AAAAATTTAAAATTT
23025210 AA
1 AA
23025212 TATTTTAATT
Statistics
Matches: 57, Mismatches: 18, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
14 11 0.19
15 46 0.81
ACGTcount: A:0.70, C:0.01, G:0.01, T:0.27
Consensus pattern (15 bp):
AAAAATTTAAAATTT
Found at i:23025301 original size:17 final size:18
Alignment explanation
Indices: 23025263--23025300 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
23025253 ATTTAAAAAT
**
23025263 AAATAAAAAAAATGTTAA
1 AAATAAAAAAAAAATTAA
23025281 AAATAAAAAAAAAATTAA
1 AAATAAAAAAAAAATTAA
23025299 AA
1 AA
23025301 TTGAACAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (18 bp):
AAATAAAAAAAAAATTAA
Found at i:23029622 original size:19 final size:21
Alignment explanation
Indices: 23029594--23029641 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
23029584 TTATTATTTA
23029594 TTTTAGTTTTGATTCTAA-AT
1 TTTTAGTTTTGATTCTAATAT
* *
23029614 TTTTA-TTTTTATTTTAATAT
1 TTTTAGTTTTGATTCTAATAT
23029634 TTTTAGTT
1 TTTTAGTT
23029642 AAAATTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.42
20 12 0.50
21 2 0.08
ACGTcount: A:0.23, C:0.02, G:0.06, T:0.69
Consensus pattern (21 bp):
TTTTAGTTTTGATTCTAATAT
Found at i:23043547 original size:18 final size:16
Alignment explanation
Indices: 23043507--23043548 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 16
23043497 GCAAATTAGC
23043507 TTAAAT-AAAGGATAA
1 TTAAATAAAAGGATAA
*
23043522 TTAGATAAAAGGATTAAA
1 TTAAATAAAAGGA-T-AA
23043540 TTAAATAAA
1 TTAAATAAA
23043549 GTGTAGTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 5 0.23
16 6 0.27
17 1 0.05
18 10 0.45
ACGTcount: A:0.60, C:0.00, G:0.12, T:0.29
Consensus pattern (16 bp):
TTAAATAAAAGGATAA
Found at i:23045905 original size:46 final size:46
Alignment explanation
Indices: 23045851--23046036 Score: 230
Period size: 46 Copynumber: 4.0 Consensus size: 46
23045841 GTGTGCTCTC
* *
23045851 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * *
23045897 TTATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
** * *
23045943 TGATATGAAATGAACAAAACCATGGTTGAAAGCTACCATGGCAACA
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * * * *
23045989 TGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCA
1 TGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
23046035 TG
1 TG
23046037 TCAAAGATAA
Statistics
Matches: 121, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
45 1 0.01
46 120 0.99
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.23
Consensus pattern (46 bp):
TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
Found at i:23051658 original size:21 final size:21
Alignment explanation
Indices: 23051629--23051668 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
23051619 TAATATCATA
* *
23051629 TCAATATTTTTATCTTAAATT
1 TCAACATTTTTAACTTAAATT
23051650 TCAACATTTTTAACTTAAA
1 TCAACATTTTTAACTTAAA
23051669 AAAATAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (21 bp):
TCAACATTTTTAACTTAAATT
Found at i:23054141 original size:32 final size:32
Alignment explanation
Indices: 23054100--23054165 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
23054090 TCCTACATTG
23054100 TATATACTGCGCCTAAAGATGCATGAGCAAGC
1 TATATACTGCGCCTAAAGATGCATGAGCAAGC
23054132 TATATACTGCGCCTAAAGATGCATGAGCAAGC
1 TATATACTGCGCCTAAAGATGCATGAGCAAGC
23054164 TA
1 TA
23054166 ACTTCTAGTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (32 bp):
TATATACTGCGCCTAAAGATGCATGAGCAAGC
Found at i:23056459 original size:23 final size:23
Alignment explanation
Indices: 23056428--23056475 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
23056418 TTGTCGGAGT
*
23056428 AACTTATGACAAATACACAGTAA
1 AACTAATGACAAATACACAGTAA
23056451 AACTAATGACAAATACACAGTAA
1 AACTAATGACAAATACACAGTAA
23056474 AA
1 AA
23056476 ATATCATTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.56, C:0.17, G:0.08, T:0.19
Consensus pattern (23 bp):
AACTAATGACAAATACACAGTAA
Found at i:23070782 original size:63 final size:64
Alignment explanation
Indices: 23070683--23070808 Score: 191
Period size: 63 Copynumber: 2.0 Consensus size: 64
23070673 CATTCATAGT
* * * *
23070683 ACATCTAGTTAGGAGCATCTGATTCATTTTGATCATAGCATCCTAA-TTTTTGGCATAAGCATC
1 ACATCTAGCTAGGAGCATCTGATTCATGTCGATCATAGCATCCTAACTATTTGGCATAAGCATC
* *
23070746 ACATCTAGCTAGGAGCGTTTGATTCATGTCGATCATAGCATCCTAACTATTTGGCATAAGCAT
1 ACATCTAGCTAGGAGCATCTGATTCATGTCGATCATAGCATCCTAACTATTTGGCATAAGCAT
23070809 ATATACATGA
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
63 41 0.73
64 15 0.27
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (64 bp):
ACATCTAGCTAGGAGCATCTGATTCATGTCGATCATAGCATCCTAACTATTTGGCATAAGCATC
Found at i:23070987 original size:45 final size:44
Alignment explanation
Indices: 23070923--23071395 Score: 195
Period size: 45 Copynumber: 10.7 Consensus size: 44
23070913 AAGTTACGGA
23070923 TCTTATCTCCATGTATCGGCTATGGAGCAGATTAGAAATGACAAG
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATT-GAAATGACAAG
* ** **
23070968 TCTTATCTCCATGTATCGGCTATGGAGCATATT-TTATCCTCTAA-
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTGAAAT-GAC-AAG
* * * * * *
23071012 TCTTATCTTCC-TGAAGT-TGC-AGGGAGCAGACTGCAAATTA-TAG
1 TCTTATC-TCCATGTA-TCGGCTATGGAGCAGATTG-AAATGACAAG
* ** * *
23071055 ATCTTATCTCCATGTATCAGCTATGGAGCAGATAAAAAATGGCGAG
1 -TCTTATCTCCATGTATCGGCTATGGAGCAGAT-TGAAATGACAAG
** *** *
23071101 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACTAG
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTGAAATGACAAG
* * * * * ** * * *
23071145 TCTTATTTTCTTGAAGT-TGC-AAAGAGCAGACTGCAAATTA-TAG
1 TCTTATCTCCATGTA-TCGGCTATGGAGCAGATTG-AAATGACAAG
* * *
23071188 ATCTTATCTCCATGTATCGGCTATGAAGCAGATCAGAAATGGCAAG
1 -TCTTATCTCCATGTATCGGCTATGGAGCAGAT-TGAAATGACAAG
* ** * *
23071234 TCTTATCTCCATGTATCGGCTATGAAGCAGATT-TTA-GCCATTAA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTGAAATGACA--AG
* * * * * *
23071278 TCTTACTTTCC-TGAAGT-TGC-AGGGAGCAGACTGCAAATTAC-AG
1 TCTTA-TCTCCATGTA-TCGGCTATGGAGCAGATTG-AAATGACAAG
* ** *
23071321 ATCTTATCTCCATGTATCGGCTATGGAGTAGATCAAAGATGGA-GAG
1 -TCTTATCTCCATGTATCGGCTATGGAGCAGATTGAA-AT-GACAAG
*
23071367 TCTTATCTTCATGTATCGGCTATGGAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCA
23071396 AATTTAAGCC
Statistics
Matches: 308, Mismatches: 86, Indels: 68
0.67 0.19 0.15
Matches are distributed among these distances:
42 4 0.01
43 44 0.14
44 80 0.26
45 171 0.56
46 9 0.03
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.32
Consensus pattern (44 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAGATTGAAATGACAAG
Found at i:23071160 original size:133 final size:133
Alignment explanation
Indices: 23070921--23071407 Score: 733
Period size: 133 Copynumber: 3.7 Consensus size: 133
23070911 GAAAGTTACG
* * *
23070921 GATCTTATCTCCATGTATCGGCTATGGAGCAGATTAGAAATGACAAGTCTTATCTCCATGTATCG
1 GATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCAAGTCTTATCTCCATGTATCG
* * * *
23070986 GCTATGGAGCATATTTTATCCTCTAATCTTATCTTCCTGAAGTTGCAGGGAGCAGACTGCAAATT
66 GCTATGGAGCAGATTTTAGCCACTAATCTTATTTTCCTGAAGTTGCAGGGAGCAGACTGCAAATT
23071051 ATA
131 ATA
* * *
23071054 GATCTTATCTCCATGTATCAGCTATGGAGCAGATAAAAAATGGCGAGTCTTATCTCCATGTATCG
1 GATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCAAGTCTTATCTCCATGTATCG
* * **
23071119 GCTATGGAGCAGATTTTAGCCACTAGTCTTATTTTCTTGAAGTTGCAAAGAGCAGACTGCAAATT
66 GCTATGGAGCAGATTTTAGCCACTAATCTTATTTTCCTGAAGTTGCAGGGAGCAGACTGCAAATT
23071184 ATA
131 ATA
* *
23071187 GATCTTATCTCCATGTATCGGCTATGAAGCAGATCAGAAATGGCAAGTCTTATCTCCATGTATCG
1 GATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCAAGTCTTATCTCCATGTATCG
* * *
23071252 GCTATGAAGCAGATTTTAGCCATTAATCTTACTTTCCTGAAGTTGCAGGGAGCAGACTGCAAATT
66 GCTATGGAGCAGATTTTAGCCACTAATCTTATTTTCCTGAAGTTGCAGGGAGCAGACTGCAAATT
*
23071317 ACA
131 ATA
* * *
23071320 GATCTTATCTCCATGTATCGGCTATGGAGTAGATCAAAGATGG-AGAGTCTTATCTTCATGTATC
1 GATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCA-AGTCTTATCTCCATGTATC
* *
23071384 GGCTATGGAGCAAATTTAAGCCAC
65 GGCTATGGAGCAGATTTTAGCCAC
23071408 CGGCTTTATC
Statistics
Matches: 318, Mismatches: 35, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
132 1 0.00
133 317 1.00
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (133 bp):
GATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCAAGTCTTATCTCCATGTATCG
GCTATGGAGCAGATTTTAGCCACTAATCTTATTTTCCTGAAGTTGCAGGGAGCAGACTGCAAATT
ATA
Found at i:23071395 original size:266 final size:266
Alignment explanation
Indices: 23070921--23071407 Score: 807
Period size: 266 Copynumber: 1.8 Consensus size: 266
23070911 GAAAGTTACG
* *
23070921 GATCTTATCTCCATGTATCGGCTATGGAGCAGATTAGAAATGACAAGTCTTATCTCCATGTATCG
1 GATCTTATCTCCATGTATCGGCTATGAAGCAGATCAGAAATGACAAGTCTTATCTCCATGTATCG
* * *
23070986 GCTATGGAGCATATTTTATCCTCTAATCTTATCTTCCTGAAGTTGCAGGGAGCAGACTGCAAATT
66 GCTATGAAGCAGATTTTAGCCTCTAATCTTATCTTCCTGAAGTTGCAGGGAGCAGACTGCAAATT
* *
23071051 ATAGATCTTATCTCCATGTATCAGCTATGGAGCAGATAAAAAATGGCGAGTCTTATCTCCATGTA
131 ACAGATCTTATCTCCATGTATCAGCTATGGAGCAGATAAAAAATGGAGAGTCTTATCTCCATGTA
* *
23071116 TCGGCTATGGAGCAGATTTTAGCCACTAGTCTTATTTTCTTGAAGTTGCAAAGAGCAGACTGCAA
196 TCGGCTATGGAGCAAATTTAAGCCACTAGTCTTATTTTCTTGAAGTTGCAAAGAGCAGACTGCAA
23071181 ATTATA
261 ATTATA
*
23071187 GATCTTATCTCCATGTATCGGCTATGAAGCAGATCAGAAATGGCAAGTCTTATCTCCATGTATCG
1 GATCTTATCTCCATGTATCGGCTATGAAGCAGATCAGAAATGACAAGTCTTATCTCCATGTATCG
23071252 GCTATGAAGCAGATTTTAGCCAT-TAATCTTA-CTTTCCTGAAGTTGCAGGGAGCAGACTGCAAA
66 GCTATGAAGCAGATTTTAGCC-TCTAATCTTATC-TTCCTGAAGTTGCAGGGAGCAGACTGCAAA
* * * * *
23071315 TTACAGATCTTATCTCCATGTATCGGCTATGGAGTAGATCAAAGATGGAGAGTCTTATCTTCATG
129 TTACAGATCTTATCTCCATGTATCAGCTATGGAGCAGATAAAAAATGGAGAGTCTTATCTCCATG
23071380 TATCGGCTATGGAGCAAATTTAAGCCAC
194 TATCGGCTATGGAGCAAATTTAAGCCAC
23071408 CGGCTTTATC
Statistics
Matches: 204, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
265 1 0.00
266 202 0.99
267 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (266 bp):
GATCTTATCTCCATGTATCGGCTATGAAGCAGATCAGAAATGACAAGTCTTATCTCCATGTATCG
GCTATGAAGCAGATTTTAGCCTCTAATCTTATCTTCCTGAAGTTGCAGGGAGCAGACTGCAAATT
ACAGATCTTATCTCCATGTATCAGCTATGGAGCAGATAAAAAATGGAGAGTCTTATCTCCATGTA
TCGGCTATGGAGCAAATTTAAGCCACTAGTCTTATTTTCTTGAAGTTGCAAAGAGCAGACTGCAA
ATTATA
Found at i:23071754 original size:177 final size:176
Alignment explanation
Indices: 23071286--23071972 Score: 756
Period size: 177 Copynumber: 3.9 Consensus size: 176
23071276 AATCTTACTT
* *
23071286 TCCTGAAGTTGCAGGGAGCAGACTGCAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGTA
1 TCCTGAAGTTGCAGGAAGCAGACTGCAAATTACAGATCTTATCTCCATGTACCGGCTATGGAGTA
* * * * * *
23071351 GATCAAAGATGGAGAGTCTTATCTTCATGTATCGGCTATGGAGCAAATTTAAGCCACCGGCTTTA
66 GATCAAAGATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTA
* * * *
23071416 TCTCTCTGAGGTAGCAAGAGAACAGGTTGAAGATACAAGCCTTAACC
131 TCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAAATACAAGTC-TAATC
** * * ** * * **
23071463 TCCT-AAGCAGTAAGGTAA-CAGGCTAAAAAATTTCAGATCTTATCTCCATGTATCTACTATGGA
1 TCCTGAAGTTG-CAGG-AAGCAGACT-GCAAATTACAGATCTTATCTCCATGTACCGGCTATGGA
* *
23071526 GTAGATCAAAGATGGCGAGTCTTATCTCTATGTATCGACTATGGAGCAGATTTTAGCCACCAGCC
63 GTAGATCAAAGATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCC
* * *
23071591 TTATCTCTCTAAGATAGCAAGAGAGCAGGTTGAAAATACAAGTCTCATC
128 TTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAAATACAAGTCTAATC
* * *
23071640 TGCCTGAAGTTGTAGGAAGCAGACTGGAAATTACAGATCTTATCTCCATGTACCGGCTATGAAGT
1 T-CCTGAAGTTGCAGGAAGCAGACTGCAAATTACAGATCTTATCTCCATGTACCGGCTATGGAGT
* * *
23071705 AGATCAGAA-ATGGCGAGTCTTATCTCCATGTATTGGCTATGGGGCAGATTTTAGCCACCAGTCT
65 AGATCA-AAGATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCT
* *
23071769 TATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATC
129 TATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAAATACAAGTCTAATC
* * * * *
23071817 TTCCTGAAGTCGCAAGAAGTAGGCTGCAAATTACAGATC---T-T--A--T-CCGGCTATGGAGC
1 -TCCTGAAGTTGCAGGAAGCAGACTGCAAATTACAGATCTTATCTCCATGTACCGGCTATGGAGT
* ** * *
23071873 AGATCAGAA-ATGGTGAGTCTTATCTCCATGTATCGGCTAAAGAGCAGATTTTAG-CAACTGACC
65 AGATCA-AAGATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAG-CC
* *
23071936 TTATCTCTCTGAGGTAGC-AGTGGAGCAGATTGAAAAT
128 TTATCTCTCTGAGGTAGCAAG-AGAGCAGGTTGAAAAT
23071973 GAGTTCCTAT
Statistics
Matches: 436, Mismatches: 64, Indels: 29
0.82 0.12 0.05
Matches are distributed among these distances:
167 6 0.01
168 92 0.21
169 1 0.00
171 1 0.00
173 1 0.00
174 1 0.00
176 4 0.01
177 182 0.42
178 144 0.33
179 4 0.01
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (176 bp):
TCCTGAAGTTGCAGGAAGCAGACTGCAAATTACAGATCTTATCTCCATGTACCGGCTATGGAGTA
GATCAAAGATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTA
TCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAAATACAAGTCTAATC
Found at i:23079078 original size:13 final size:13
Alignment explanation
Indices: 23079060--23079089 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
23079050 ATATAATAAC
*
23079060 ATAATTACTAAAT
1 ATAATTACGAAAT
23079073 ATAATTACGAAAT
1 ATAATTACGAAAT
23079086 ATAA
1 ATAA
23079090 AAATCCAGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.57, C:0.07, G:0.03, T:0.33
Consensus pattern (13 bp):
ATAATTACGAAAT
Found at i:23079721 original size:29 final size:28
Alignment explanation
Indices: 23079672--23079727 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 28
23079662 ATTTTAGAAA
*
23079672 ATTTTTAAAATATTAATTTTTTATATAT
1 ATTTTTAAAATATTAAATTTTTATATAT
* *
23079700 ATTTTTAAAATTTTTAAATTTTTTTATA
1 ATTTTTAAAA-TATTAAATTTTTATATA
23079728 AATATAAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 10 0.42
29 14 0.58
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (28 bp):
ATTTTTAAAATATTAAATTTTTATATAT
Found at i:23079747 original size:54 final size:52
Alignment explanation
Indices: 23079679--23079782 Score: 124
Period size: 53 Copynumber: 2.0 Consensus size: 52
23079669 AAAATTTTTA
* *
23079679 AAATATTAATTTTTTATATATAT-TTTTAAAATTTT-TAAATTTTTTTATAAATAT
1 AAATATTAATTTTTTATA-A-ATGTTTT-AAATTTTAAAAATTATTTTA-AAATAT
23079733 AAATATTGAA-TTTTTATAAATGTTTTAAATTTTAAAAATTATTTTAAAAT
1 AAATATT-AATTTTTTATAAATGTTTTAAATTTTAAAAATTATTTTAAAAT
23079783 TTTTTTGTAA
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
52 13 0.29
53 15 0.33
54 15 0.33
55 2 0.04
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (52 bp):
AAATATTAATTTTTTATAAATGTTTTAAATTTTAAAAATTATTTTAAAATAT
Found at i:23088319 original size:5 final size:5
Alignment explanation
Indices: 23088298--23088330 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
23088288 TTTAAGTATG
23088298 TATA- TATAT TATA- TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT
23088331 AATAAAACAA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 8 0.30
5 19 0.70
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
TATAT
Found at i:23089118 original size:13 final size:13
Alignment explanation
Indices: 23089100--23089124 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23089090 ATTGAATTGG
23089100 TATATATATTGAA
1 TATATATATTGAA
23089113 TATATATATTGA
1 TATATATATTGA
23089125 TTATTTGAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TATATATATTGAA
Found at i:23092012 original size:93 final size:93
Alignment explanation
Indices: 23091899--23092256 Score: 689
Period size: 93 Copynumber: 3.8 Consensus size: 93
23091889 CGCCCATAAG
* * *
23091899 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
23091964 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
23091992 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
23092057 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
23092085 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
23092150 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
23092178 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
23092243 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
23092257 TCAACCATCC
Statistics
Matches: 262, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 262 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:23092014 original size:47 final size:49
Alignment explanation
Indices: 23091892--23092256 Score: 391
Period size: 46 Copynumber: 7.8 Consensus size: 49
23091882 TGTAACCCGC
* * *
23091892 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
23091938 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
* *
23091988 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
23092031 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
* *
23092081 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
23092124 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
* *
23092174 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
23092217 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
23092257 TCAACCATCC
Statistics
Matches: 268, Mismatches: 21, Indels: 57
0.77 0.06 0.16
Matches are distributed among these distances:
42 6 0.02
43 12 0.04
44 6 0.02
45 6 0.02
46 121 0.45
47 87 0.32
48 7 0.03
49 6 0.02
50 11 0.04
51 6 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:23094977 original size:16 final size:16
Alignment explanation
Indices: 23094956--23095023 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
23094946 TTTGGTTCGC
23094956 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
23094972 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
23094988 TGTAATGGATTAGAGG
1 TGTATTGGATTAGAGG
*
23095004 TGTATTGGAATAGAGG
1 TGTATTGGATTAGAGG
23095020 TGTA
1 TGTA
23095024 ATAGCAAATC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:23095275 original size:16 final size:16
Alignment explanation
Indices: 23095238--23095279 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
23095228 TTAATCATAT
*
23095238 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
23095254 TT-AAATATATTATAA
1 TTAAAATATATTATAA
23095269 TTAAAATATAT
1 TTAAAATATAT
23095280 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:23095286 original size:14 final size:15
Alignment explanation
Indices: 23095247--23095288 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
23095237 TTTAAACATA
*
23095247 ATTATTATTAAATAT
1 ATTATAATTAAATAT
23095262 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
23095276 A-TATAATTTAATA
1 ATTATAATTAAATA
23095289 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:23101738 original size:15 final size:15
Alignment explanation
Indices: 23101718--23101749 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
23101708 CATTTCACTA
*
23101718 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
23101733 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
23101748 TT
1 TT
23101750 TGCATGTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:23108363 original size:24 final size:24
Alignment explanation
Indices: 23108336--23108387 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
23108326 TTAGTAAGTC
*
23108336 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
23108360 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
23108384 AAAT
1 AAAT
23108388 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:23113872 original size:36 final size:36
Alignment explanation
Indices: 23113825--23113897 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
23113815 CACATGCTAA
* *
23113825 TTATGATCAATGGCCCATTTATCCTCTAAGTTTTTT
1 TTATGATCAATGGCCCACTGATCCTCTAAGTTTTTT
*
23113861 TTATGATCAATGGCCTACTGATCCTCTAAGTTTTTT
1 TTATGATCAATGGCCCACTGATCCTCTAAGTTTTTT
23113897 T
1 T
23113898 GTATTTAACG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.22, C:0.19, G:0.12, T:0.47
Consensus pattern (36 bp):
TTATGATCAATGGCCCACTGATCCTCTAAGTTTTTT
Found at i:23117097 original size:23 final size:21
Alignment explanation
Indices: 23117041--23117117 Score: 64
Period size: 21 Copynumber: 3.6 Consensus size: 21
23117031 TACGACACAT
* * *
23117041 AAGTACCTGAAACGACACACG
1 AAGTGCCTGATACAACACACG
23117062 AAGTGCCTGATACAACACACG
1 AAGTGCCTGATACAACACACG
* * * **
23117083 AGGTGCTTGACATACGACACATA
1 AAGTGCCTG--ATACAACACACG
23117106 AAGTGCCTGATA
1 AAGTGCCTGATA
23117118 TACGACACAT
Statistics
Matches: 44, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
21 28 0.64
23 16 0.36
ACGTcount: A:0.38, C:0.25, G:0.21, T:0.17
Consensus pattern (21 bp):
AAGTGCCTGATACAACACACG
Found at i:23117120 original size:23 final size:22
Alignment explanation
Indices: 23117030--23117136 Score: 94
Period size: 23 Copynumber: 4.9 Consensus size: 22
23117020 CCTGATCAGT
*
23117030 ATACGACACAT-AAGTACCTGA
1 ATACGACACATAAAGTGCCTGA
**
23117051 A-ACGACACACGAAGTGCCTG-
1 ATACGACACATAAAGTGCCTGA
* ** * *
23117071 ATACAACACACGAGGTGCTTGA
1 ATACGACACATAAAGTGCCTGA
23117093 CATACGACACATAAAGTGCCTGA
1 -ATACGACACATAAAGTGCCTGA
*
23117116 TATACGACACATATAGTGCCT
1 -ATACGACACATAAAGTGCCT
23117137 AATCGGCAAA
Statistics
Matches: 70, Mismatches: 12, Indels: 6
0.80 0.14 0.07
Matches are distributed among these distances:
20 9 0.13
21 25 0.36
23 36 0.51
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.19
Consensus pattern (22 bp):
ATACGACACATAAAGTGCCTGA
Found at i:23119891 original size:36 final size:36
Alignment explanation
Indices: 23119810--23119880 Score: 97
Period size: 36 Copynumber: 2.0 Consensus size: 36
23119800 TTATATAAAT
* * *
23119810 ACATATACTTTCATAAACTTCCATTCACTTGAATTA
1 ACATATACATCCATAAACTTCCATTCAATTGAATTA
**
23119846 ACATATACATCCATAAACTTTTATTCAATTGAATT
1 ACATATACATCCATAAACTTCCATTCAATTGAATT
23119881 GACAATTACA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.38, C:0.20, G:0.03, T:0.39
Consensus pattern (36 bp):
ACATATACATCCATAAACTTCCATTCAATTGAATTA
Found at i:23127135 original size:35 final size:36
Alignment explanation
Indices: 23127085--23127154 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 36
23127075 CATTATAATC
* *
23127085 ACTGTCACATTGCATGAA-AACATACCTACATATTT
1 ACTGTCACATGGCATGAATAACATACCCACATATTT
*
23127120 ACTGTCTCATGGCATGAATAACATACCCACATATT
1 ACTGTCACATGGCATGAATAACATACCCACATATT
23127155 CTCATTCACA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
35 16 0.52
36 15 0.48
ACGTcount: A:0.36, C:0.24, G:0.10, T:0.30
Consensus pattern (36 bp):
ACTGTCACATGGCATGAATAACATACCCACATATTT
Found at i:23130842 original size:41 final size:42
Alignment explanation
Indices: 23130726--23130842 Score: 143
Period size: 41 Copynumber: 2.8 Consensus size: 42
23130716 TTGTATAAAA
* * *
23130726 CACCGGCATAAAGCCTGTTAGGCACAAAGCCTG-ATACATTT
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTGAATACATTT
*
23130767 CACCGGCA-CAAAGCCTGCTAGGCATAAAGTCTGAATTA-A-TT
1 CACCGGCATC-AAGCCTGCTAGGCATAAAGCCTGAA-TACATTT
*
23130808 CACCGGCATCAAGCCTGCTAGGCATTAAGCCTGAA
1 CACCGGCATCAAGCCTGCTAGGCATAAAGCCTGAA
23130843 AATCTCAAAT
Statistics
Matches: 66, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
41 61 0.92
42 3 0.05
43 2 0.03
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.21
Consensus pattern (42 bp):
CACCGGCATCAAGCCTGCTAGGCATAAAGCCTGAATACATTT
Found at i:23131049 original size:64 final size:64
Alignment explanation
Indices: 23130928--23131049 Score: 181
Period size: 64 Copynumber: 1.9 Consensus size: 64
23130918 TCGAACCATA
* * *
23130928 CACATATGTATGTAAAATTCATAAATTAAATTCAGCTCAAGAACTTTATAACCTATATTTGAAT
1 CACATATGTATATAAAATTCATAAATTAAATTCAGCTCAAGAACTTTAAAACATATATTTGAAT
* * * *
23130992 CACATATGTATATAAAATTCGTACATTAATTTCAGCTCAAGAACTTTAAAATATATAT
1 CACATATGTATATAAAATTCATAAATTAAATTCAGCTCAAGAACTTTAAAACATATAT
23131050 ATATTCGAAC
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
64 51 1.00
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.36
Consensus pattern (64 bp):
CACATATGTATATAAAATTCATAAATTAAATTCAGCTCAAGAACTTTAAAACATATATTTGAAT
Found at i:23131193 original size:60 final size:60
Alignment explanation
Indices: 23131072--23131198 Score: 150
Period size: 60 Copynumber: 2.1 Consensus size: 60
23131062 TATGTGTGTA
* * * **
23131072 TATATATATATATTTCATAATATTAAGTTCAACTCAAAGAACTTGTATCATACATTCAAC
1 TATATATATATAATTCATAATATTAAATTCAACTCAAAGAAATTAAATCATACATTCAAC
* *
23131132 TATATATATATAATTCATAACT-TTAAATTCAACTC-ATGAAATTAAATCTTACATTCGAAC
1 TATATATATATAATTCATAA-TATTAAATTCAACTCAAAGAAATTAAATCATACATTC-AAC
*
23131192 TACATAT
1 TATATAT
23131199 CCATGTAAAT
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
59 16 0.28
60 40 0.70
61 1 0.02
ACGTcount: A:0.43, C:0.15, G:0.04, T:0.39
Consensus pattern (60 bp):
TATATATATATAATTCATAATATTAAATTCAACTCAAAGAAATTAAATCATACATTCAAC
Found at i:23133682 original size:78 final size:78
Alignment explanation
Indices: 23133450--23133675 Score: 389
Period size: 78 Copynumber: 2.9 Consensus size: 78
23133440 TCTGACTTTT
*
23133450 ACCTTGAACTTTTCTAGTAAATTTTTACGCAAATTCAACCAATTTGATGCTCTTTATGAATGCAA
1 ACCTTGGACTTTTCTAGTAAATTTTTACGCAAATTCAACCAATTTGATGCTCTTTATGAATGCAA
23133515 TGCTTACAGGATC
66 TGCTTACAGGATC
* *
23133528 ACCTTGGACTTTTCTAGTAAATTTTCACACAAATTCAACCAATTTGATGCTCTTTATGAATGCAA
1 ACCTTGGACTTTTCTAGTAAATTTTTACGCAAATTCAACCAATTTGATGCTCTTTATGAATGCAA
*
23133593 TTCTTACAGGATC
66 TGCTTACAGGATC
* * *
23133606 ACCTTGGACTTTTCTAGTAAATTTTTACGCATATTCATCCAAATTGATGCTCTTTATGAATGCAA
1 ACCTTGGACTTTTCTAGTAAATTTTTACGCAAATTCAACCAATTTGATGCTCTTTATGAATGCAA
23133671 TGCTT
66 TGCTT
23133676 GTAGGATGAA
Statistics
Matches: 138, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
78 138 1.00
ACGTcount: A:0.30, C:0.19, G:0.12, T:0.38
Consensus pattern (78 bp):
ACCTTGGACTTTTCTAGTAAATTTTTACGCAAATTCAACCAATTTGATGCTCTTTATGAATGCAA
TGCTTACAGGATC
Found at i:23139730 original size:51 final size:51
Alignment explanation
Indices: 23139654--23139757 Score: 190
Period size: 51 Copynumber: 2.0 Consensus size: 51
23139644 ACACCACAAT
*
23139654 AATGCATTTGAAATCTAAAAAAACATGAAACTTCAAAGGTGCATCAGCAGG
1 AATGCATTTGAAATCTAAAAAAACATGAAACTTCAAAGGTGCAACAGCAGG
*
23139705 AATGCATTTGAAATCTAAAAAAACATGAAACTTCACAGGTGCAACAGCAGG
1 AATGCATTTGAAATCTAAAAAAACATGAAACTTCAAAGGTGCAACAGCAGG
23139756 AA
1 AA
23139758 CATGGCCAAA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.46, C:0.16, G:0.17, T:0.20
Consensus pattern (51 bp):
AATGCATTTGAAATCTAAAAAAACATGAAACTTCAAAGGTGCAACAGCAGG
Found at i:23142010 original size:3 final size:3
Alignment explanation
Indices: 23142002--23142053 Score: 95
Period size: 3 Copynumber: 17.3 Consensus size: 3
23141992 CTCAAGCTGT
*
23142002 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA CTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
23142050 TTA T
1 TTA T
23142054 ATTTTGGTCC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:23154634 original size:36 final size:36
Alignment explanation
Indices: 23154594--23154666 Score: 121
Period size: 36 Copynumber: 2.0 Consensus size: 36
23154584 CTAGAAGATA
23154594 TAATTATGGAA-TCTTAGAGTTCTAATTGTATATAGC
1 TAATTATGGAAGT-TTAGAGTTCTAATTGTATATAGC
*
23154630 TAATTATGTAAGTTTAGAGTTCTAATTGTATATAGC
1 TAATTATGGAAGTTTAGAGTTCTAATTGTATATAGC
23154666 T
1 T
23154667 TTTAATTGTA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 34 0.97
37 1 0.03
ACGTcount: A:0.33, C:0.07, G:0.16, T:0.44
Consensus pattern (36 bp):
TAATTATGGAAGTTTAGAGTTCTAATTGTATATAGC
Found at i:23154968 original size:49 final size:47
Alignment explanation
Indices: 23154892--23154988 Score: 133
Period size: 49 Copynumber: 2.0 Consensus size: 47
23154882 TAAGGGAATT
*
23154892 CTGTTGAATCCTTTATCGTTACGAGTTAAAGCTGACTTAGGCGTTTTTA
1 CTGTTGAATCCTTTATCCTTAC-AGTT-AAGCTGACTTAGGCGTTTTTA
*
23154941 CTGTTGAATCCTTTATCACTCTA-AGTTAGGCTGACTTAGGCGTTTTTA
1 CTGTTGAATCCTTTATC-CT-TACAGTTAAGCTGACTTAGGCGTTTTTA
23154989 AGCAAAGAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
48 20 0.45
49 21 0.48
50 1 0.02
51 2 0.05
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.41
Consensus pattern (47 bp):
CTGTTGAATCCTTTATCCTTACAGTTAAGCTGACTTAGGCGTTTTTA
Found at i:23159773 original size:36 final size:36
Alignment explanation
Indices: 23159733--23159805 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
23159723 CTAGAAGATA
* * *
23159733 TAATTATGGAATCTTAGAGTTCTAATTGTATATAGC
1 TAATTATGGAAGCTTAGAATTCTAATTGTATACAGC
*
23159769 TAATTATGTAAGCTTAGAATTCTAATTGTATACAGC
1 TAATTATGGAAGCTTAGAATTCTAATTGTATACAGC
23159805 T
1 T
23159806 TTTAATTGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.34, C:0.10, G:0.15, T:0.41
Consensus pattern (36 bp):
TAATTATGGAAGCTTAGAATTCTAATTGTATACAGC
Found at i:23160107 original size:49 final size:48
Alignment explanation
Indices: 23160031--23160127 Score: 131
Period size: 49 Copynumber: 2.0 Consensus size: 48
23160021 TAAGGGAATT
** *
23160031 CTGTTAAATCCTTTATCGTTGCGAGTTAAAACTGACTTAGGCGTTTTTA
1 CTGTTAAATCCTTTATCACTGCAAGTT-AAACTGACTTAGGCGTTTTTA
* **
23160080 CTGTTGAATCCTTTATCACTGCAAGTTAGGCTGACTTAGGCGTTTTTA
1 CTGTTAAATCCTTTATCACTGCAAGTTAAACTGACTTAGGCGTTTTTA
23160128 AGCAAAGAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
48 19 0.45
49 23 0.55
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.40
Consensus pattern (48 bp):
CTGTTAAATCCTTTATCACTGCAAGTTAAACTGACTTAGGCGTTTTTA
Found at i:23161294 original size:62 final size:63
Alignment explanation
Indices: 23161218--23161343 Score: 236
Period size: 63 Copynumber: 2.0 Consensus size: 63
23161208 GCGGTGATAA
*
23161218 AGAAACAGGTGAAGTTGCAATTT-GGGGGATATAGATATTGCTCCACTTCCAAACTTTAACTT
1 AGAAACAGGTGAAGTTGCAATTTGGGGGGATATAGATATTGCTCCACTTCCAAACGTTAACTT
23161280 AGAAACAGGTGAAGTTGCAATTTGGGGGGATATAGATATTGCTCCACTTCCAAACGTTAACTT
1 AGAAACAGGTGAAGTTGCAATTTGGGGGGATATAGATATTGCTCCACTTCCAAACGTTAACTT
23161343 A
1 A
23161344 CTTGATTCTT
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
62 23 0.37
63 39 0.63
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (63 bp):
AGAAACAGGTGAAGTTGCAATTTGGGGGGATATAGATATTGCTCCACTTCCAAACGTTAACTT
Found at i:23177636 original size:27 final size:27
Alignment explanation
Indices: 23177605--23177657 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
23177595 ATTTAATTAA
*
23177605 AATTTTAAAG-TTTTATACTTTTTAAAT
1 AATTTTAAAGATTTT-TAATTTTTAAAT
*
23177632 AATTTTAATGATTTTTAATTTTTAAA
1 AATTTTAAAGATTTTTAATTTTTAAA
23177658 AATAAATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 19 0.83
28 4 0.17
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.57
Consensus pattern (27 bp):
AATTTTAAAGATTTTTAATTTTTAAAT
Found at i:23195695 original size:16 final size:16
Alignment explanation
Indices: 23195674--23195707 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
23195664 TATATTGTCA
23195674 ATATAAAAAATATATT
1 ATATAAAAAATATATT
*
23195690 ATATAAAATATATATT
1 ATATAAAAAATATATT
23195706 AT
1 AT
23195708 TTATTTCGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
ATATAAAAAATATATT
Found at i:23197893 original size:41 final size:41
Alignment explanation
Indices: 23197848--23197949 Score: 143
Period size: 41 Copynumber: 2.5 Consensus size: 41
23197838 GCTTAGAGCT
*
23197848 TAGCAGGCTTATTGCCGGTGAAACACTTCAGACAAAATGTC
1 TAGCAGGCTTAATGCCGGTGAAACACTTCAGACAAAATGTC
* * * *
23197889 TAGCAGGCTTAATGCCGGTGAAATATTTCAGACTATATGTC
1 TAGCAGGCTTAATGCCGGTGAAACACTTCAGACAAAATGTC
23197930 TAGCAGGC-TAAGTGCCGGTG
1 TAGCAGGCTTAA-TGCCGGTG
23197950 TACTGAATCA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
40 3 0.05
41 52 0.95
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (41 bp):
TAGCAGGCTTAATGCCGGTGAAACACTTCAGACAAAATGTC
Found at i:23205508 original size:41 final size:41
Alignment explanation
Indices: 23205463--23205564 Score: 143
Period size: 41 Copynumber: 2.5 Consensus size: 41
23205453 GCTTAGAGCT
*
23205463 TAGCAGGCTTATTGCCGGTGAAACACTTCAGACAAAATGTC
1 TAGCAGGCTTAATGCCGGTGAAACACTTCAGACAAAATGTC
* * * *
23205504 TAGCAGGCTTAATGCCGGTGAAATATTTCAGACTATATGTC
1 TAGCAGGCTTAATGCCGGTGAAACACTTCAGACAAAATGTC
23205545 TAGCAGGC-TAAGTGCCGGTG
1 TAGCAGGCTTAA-TGCCGGTG
23205565 TACTGAATCA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
40 3 0.05
41 52 0.95
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (41 bp):
TAGCAGGCTTAATGCCGGTGAAACACTTCAGACAAAATGTC
Found at i:23208505 original size:12 final size:12
Alignment explanation
Indices: 23208488--23208514 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
23208478 ACAATTTTTT
23208488 TATACATATATA
1 TATACATATATA
23208500 TATACATATATA
1 TATACATATATA
23208512 TAT
1 TAT
23208515 TACTTTTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.44
Consensus pattern (12 bp):
TATACATATATA
Found at i:23212952 original size:41 final size:41
Alignment explanation
Indices: 23212902--23213129 Score: 321
Period size: 41 Copynumber: 5.6 Consensus size: 41
23212892 TTAAACAGGT
* * * * *
23212902 TCACTGGCACTTAGCTTGTTAGGCTTAAAGCCTGATTTAGA
1 TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGA
* * * *
23212943 TCATCGGCACTTAGCCTGCTAGGCTTATAGCCTAATCCAGT
1 TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGA
*
23212984 TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAAA
1 TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGA
* * *
23213025 TCACCGGCACTTAGCTTGCTAGGCTTATAGCCTAATTCAGT
1 TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGA
* *
23213066 TCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTTAGA
1 TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGA
23213107 TCACCGGCACTTAGCCTGCTAGG
1 TCACCGGCACTTAGCCTGCTAGG
23213130 TTTTAAAACC
Statistics
Matches: 164, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 164 1.00
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (41 bp):
TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGA
Found at i:23213037 original size:82 final size:82
Alignment explanation
Indices: 23212900--23213129 Score: 370
Period size: 82 Copynumber: 2.8 Consensus size: 82
23212890 ATTTAAACAG
* * * * *
23212900 GTTCACTGGCACTTAGCTTGTTAGGCTTAAAGCCTGATTTAGATCATCGGCACTTAGCCTGCTAG
1 GTTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTTAGATCACCGGCACTTAGCCTGCTAG
23212965 GCTTATAGCCTAATCCA
66 GCTTATAGCCTAATCCA
* * *
23212982 GTTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAAATCACCGGCACTTAGCTTGCTAG
1 GTTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTTAGATCACCGGCACTTAGCCTGCTAG
*
23213047 GCTTATAGCCTAATTCA
66 GCTTATAGCCTAATCCA
*
23213064 GTTCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTTAGATCACCGGCACTTAGCCTGCTAG
1 GTTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTTAGATCACCGGCACTTAGCCTGCTAG
23213129 G
66 G
23213130 TTTTAAAACC
Statistics
Matches: 135, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
82 135 1.00
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.30
Consensus pattern (82 bp):
GTTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTTAGATCACCGGCACTTAGCCTGCTAG
GCTTATAGCCTAATCCA
Found at i:23222260 original size:23 final size:23
Alignment explanation
Indices: 23222234--23222278 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
23222224 TAGGTATGTG
*
23222234 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
23222257 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
23222279 TTGAATTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:23231800 original size:46 final size:44
Alignment explanation
Indices: 23231741--23231855 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
23231731 ACAGGACAGA
* *
23231741 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
23231787 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
23231831 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
23231856 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:23231836 original size:44 final size:45
Alignment explanation
Indices: 23231741--23231874 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
23231731 ACAGGACAGA
* *
23231741 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
23231787 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
23231831 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
23231875 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:23245043 original size:5 final size:5
Alignment explanation
Indices: 23245033--23245104 Score: 64
Period size: 5 Copynumber: 14.8 Consensus size: 5
23245023 TGTTAAAAAA
* *
23245033 ATATT ATATT ATAGTA ATGATT ATGTT -T-TT ATATT ATATT ATTATT
1 ATATT ATATT ATA-TT AT-ATT ATATT ATATT ATATT ATATT A-TATT
23245079 A-A-T ATATT ATATT ATATT ATA-T ATAT
1 ATATT ATATT ATATT ATATT ATATT ATAT
23245105 ACATAAAACA
Statistics
Matches: 56, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
3 4 0.07
4 8 0.14
5 32 0.57
6 11 0.20
7 1 0.02
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (5 bp):
ATATT
Found at i:23245086 original size:19 final size:19
Alignment explanation
Indices: 23245062--23245104 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
23245052 ATTATGTTTT
23245062 TATATTATATTATTATTA-A
1 TATATTATATTA-TATTATA
23245081 TATATTATATTATATTATA
1 TATATTATATTATATTATA
23245100 TATAT
1 TATAT
23245105 ACATAAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 5 0.22
19 18 0.78
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
TATATTATATTATATTATA
Found at i:23246078 original size:46 final size:44
Alignment explanation
Indices: 23246019--23246133 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
23246009 ACAGGACAGA
* *
23246019 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
23246065 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
23246109 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
23246134 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:23246114 original size:44 final size:45
Alignment explanation
Indices: 23246019--23246152 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
23246009 ACAGGACAGA
* *
23246019 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
23246065 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
23246109 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
23246153 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:23250213 original size:22 final size:22
Alignment explanation
Indices: 23250188--23250240 Score: 97
Period size: 22 Copynumber: 2.4 Consensus size: 22
23250178 TTTACAAGCC
23250188 CTCTCAACTAGAATGACAAATT
1 CTCTCAACTAGAATGACAAATT
23250210 CTCTCAACTAGAATGACAAATT
1 CTCTCAACTAGAATGACAAATT
*
23250232 CTTTCAACT
1 CTCTCAACT
23250241 CTAGAATTCC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.38, C:0.25, G:0.08, T:0.30
Consensus pattern (22 bp):
CTCTCAACTAGAATGACAAATT
Found at i:23254920 original size:16 final size:16
Alignment explanation
Indices: 23254899--23254948 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
23254889 AATGTGTAAG
23254899 ACCATGGTTGAAAGAT
1 ACCATGGTTGAAAGAT
*
23254915 ACCAT-G--GCAAG--
1 ACCATGGTTGAAAGAT
23254926 ACCATGGTTGAAAGAT
1 ACCATGGTTGAAAGAT
23254942 ACCATGG
1 ACCATGG
23254949 AAACATGATA
Statistics
Matches: 27, Mismatches: 2, Indels: 10
0.69 0.05 0.26
Matches are distributed among these distances:
11 5 0.19
12 1 0.04
13 4 0.15
14 4 0.15
15 1 0.04
16 12 0.44
ACGTcount: A:0.36, C:0.18, G:0.26, T:0.20
Consensus pattern (16 bp):
ACCATGGTTGAAAGAT
Found at i:23254929 original size:27 final size:27
Alignment explanation
Indices: 23254896--23254948 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
23254886 TGAAATGTGT
23254896 AAGACCATGGTTGAAAGATACCATGGC
1 AAGACCATGGTTGAAAGATACCATGGC
23254923 AAGACCATGGTTGAAAGATACCATGG
1 AAGACCATGGTTGAAAGATACCATGG
23254949 AAACATGATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.38, C:0.17, G:0.26, T:0.19
Consensus pattern (27 bp):
AAGACCATGGTTGAAAGATACCATGGC
Found at i:23254969 original size:73 final size:73
Alignment explanation
Indices: 23254850--23254997 Score: 269
Period size: 73 Copynumber: 2.0 Consensus size: 73
23254840 TGAAATGTGT
* *
23254850 AAGACCATGGGTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGAT
1 AAGACCATGGGTGAAAGATACCATGGAAACATGATATAAAATGTGTAAGACCATGGTTGAAAGAT
23254915 ACCATGGC
66 ACCATGGC
*
23254923 AAGACCATGGTTGAAAGATACCATGGAAACATGATATAAAATGTGTAAGACCATGGTTGAAAGAT
1 AAGACCATGGGTGAAAGATACCATGGAAACATGATATAAAATGTGTAAGACCATGGTTGAAAGAT
23254988 ACCATGGC
66 ACCATGGC
23254996 AA
1 AA
23254998 CATGACGGGA
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 72 1.00
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (73 bp):
AAGACCATGGGTGAAAGATACCATGGAAACATGATATAAAATGTGTAAGACCATGGTTGAAAGAT
ACCATGGC
Found at i:23254975 original size:46 final size:46
Alignment explanation
Indices: 23254923--23255123 Score: 235
Period size: 46 Copynumber: 4.4 Consensus size: 46
23254913 ATACCATGGC
* * * **
23254923 AAGACCATGGTTGAAAGATACCATGGAAACATGATATAAAATGTGT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAAT
**
23254969 AAGACCATGGTTGAAAGATACCATGGCAACATGAC-GGGAATGAAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAAT
* * ** * *
23255014 ATGACCATGGTTGAAAGATACCATTGCAATGTAACATG-AAATGAAC
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAAT
* *
23255060 AAGACCATGGTTGAAAGATACCATGGCAACCTGACAGAAAATGAGT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAAT
*
23255106 AAGACCATAGTTGAAAGA
1 AAGACCATGGTTGAAAGA
23255124 CATTATGGCA
Statistics
Matches: 130, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
45 36 0.28
46 93 0.72
47 1 0.01
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.20
Consensus pattern (46 bp):
AAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAAT
Found at i:23255029 original size:91 final size:92
Alignment explanation
Indices: 23254923--23255123 Score: 251
Period size: 91 Copynumber: 2.2 Consensus size: 92
23254913 ATACCATGGC
* * ***
23254923 AAGACCATGGTTGAAAGATACCATGGAAACATGATATAAAATGTGTAAGACCATGGTTGAAAGAT
1 AAGACCATGGTTGAAAGATACCATGGAAACATAACATAAAATGAACAAGACCATGGTTGAAAGAT
**
23254988 ACCATGGCAACATGAC-GGGAATGAAT
66 ACCATGGCAACATGACAGAAAATGAAT
* * * ** *
23255014 ATGACCATGGTTGAAAGATACCATTGCAATGTAACATGAAATGAACAAGACCATGGTTGAAAGAT
1 AAGACCATGGTTGAAAGATACCATGGAAACATAACATAAAATGAACAAGACCATGGTTGAAAGAT
* *
23255079 ACCATGGCAACCTGACAGAAAATGAGT
66 ACCATGGCAACATGACAGAAAATGAAT
*
23255106 AAGACCATAGTTGAAAGA
1 AAGACCATGGTTGAAAGA
23255124 CATTATGGCA
Statistics
Matches: 92, Mismatches: 17, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
91 69 0.75
92 23 0.25
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.20
Consensus pattern (92 bp):
AAGACCATGGTTGAAAGATACCATGGAAACATAACATAAAATGAACAAGACCATGGTTGAAAGAT
ACCATGGCAACATGACAGAAAATGAAT
Found at i:23255995 original size:43 final size:43
Alignment explanation
Indices: 23255948--23256043 Score: 138
Period size: 43 Copynumber: 2.2 Consensus size: 43
23255938 TAACCCAACT
*
23255948 ATGGTCTTACACGAAATCAAATAACGATACTAATGTCTCAAAC
1 ATGGTCTTACACGAAATCAAATAACGATACTAATGTCCCAAAC
* * * * *
23255991 ATGGTCTTACACGTAATCACATAATGATGCTAATGTCCCAGAC
1 ATGGTCTTACACGAAATCAAATAACGATACTAATGTCCCAAAC
23256034 ATGGTCTTAC
1 ATGGTCTTAC
23256044 CCATAATCAC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (43 bp):
ATGGTCTTACACGAAATCAAATAACGATACTAATGTCCCAAAC
Found at i:23256051 original size:43 final size:43
Alignment explanation
Indices: 23255948--23256055 Score: 128
Period size: 43 Copynumber: 2.5 Consensus size: 43
23255938 TAACCCAACT
* * *
23255948 ATGGTCTTACACGA-AATCAAATAACGATACTAATGTCTCAAAC
1 ATGGTCTTAC-CCATAATCACATAACGATACTAATGTCCCAAAC
* * * * *
23255991 ATGGTCTTACACGTAATCACATAATGATGCTAATGTCCCAGAC
1 ATGGTCTTACCCATAATCACATAACGATACTAATGTCCCAAAC
23256034 ATGGTCTTACCCATAATCACAT
1 ATGGTCTTACCCATAATCACAT
23256056 CTCGTTAATC
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
43 54 1.00
ACGTcount: A:0.36, C:0.23, G:0.13, T:0.28
Consensus pattern (43 bp):
ATGGTCTTACCCATAATCACATAACGATACTAATGTCCCAAAC
Found at i:23257074 original size:25 final size:25
Alignment explanation
Indices: 23257046--23257093 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
23257036 CCACATCTCT
23257046 CATGAGCTTCCTAATATTTAGCTCG
1 CATGAGCTTCCTAATATTTAGCTCG
* **
23257071 CATGAGCTTTCTGTTATTTAGCT
1 CATGAGCTTCCTAATATTTAGCT
23257094 TATATGAGCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.21, C:0.21, G:0.17, T:0.42
Consensus pattern (25 bp):
CATGAGCTTCCTAATATTTAGCTCG
Found at i:23257345 original size:16 final size:17
Alignment explanation
Indices: 23257321--23257353 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
23257311 ACTTGATATA
23257321 TTGAAACATG-ATTTGG
1 TTGAAACATGTATTTGG
*
23257337 TTGATACATGTATTTGG
1 TTGAAACATGTATTTGG
23257354 AACTTATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.27, C:0.06, G:0.24, T:0.42
Consensus pattern (17 bp):
TTGAAACATGTATTTGG
Found at i:23259114 original size:17 final size:17
Alignment explanation
Indices: 23259092--23259133 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
23259082 AATTCATACG
23259092 AGCTTACTAAGCTTTAT
1 AGCTTACTAAGCTTTAT
23259109 AGCTTACTAAGCTTTAT
1 AGCTTACTAAGCTTTAT
23259126 AGCTTACT
1 AGCTTACT
23259134 TTGTTTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.12, T:0.40
Consensus pattern (17 bp):
AGCTTACTAAGCTTTAT
Found at i:23260360 original size:35 final size:35
Alignment explanation
Indices: 23260316--23260478 Score: 229
Period size: 35 Copynumber: 4.6 Consensus size: 35
23260306 TCCTCATTGA
* *
23260316 AATACCATACCTACATTTCACAACTCGGTATGGGA-
1 AATACCATACCTACGTTTCACAACTCAGTAT-GGAT
* **
23260351 AATGCCATACCTACGTTTCTTAACTCAGTATGGAT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
23260386 AATACCATACCTACGTTTCACAACTCAGTATGGAT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
* *
23260421 GATACCATACCTACGTTTCACAACTCAGTATGGTT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
*
23260456 AATACTATACCTTACGTTTCACA
1 AATACCATACC-TACGTTTCACA
23260479 CTTTTCCATG
Statistics
Matches: 114, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
34 3 0.03
35 100 0.88
36 11 0.10
ACGTcount: A:0.32, C:0.25, G:0.12, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACGTTTCACAACTCAGTATGGAT
Found at i:23267792 original size:143 final size:141
Alignment explanation
Indices: 23267532--23267826 Score: 385
Period size: 143 Copynumber: 2.1 Consensus size: 141
23267522 TAGAATTAAA
* * * * *
23267532 CAAGTGCATTGTTTATTCCTCTCTAAGGTTGGGCCTTTTTCGGGTTTAGTATTGTTGTTCCGACT
1 CAAGTACATGGTTTATTCCTATCTAAGGTTGGGCCTTTTCCAGGTTTAGTATTGTTGTTCCGACT
* * *
23267597 CTTCATTTTTCTCAAAGTCACCATGTCCGAGGCATACTGGGATATATGTATGTCATATTACACTC
66 CTTCATTTTGCTCAAAGTCACCATGTCCGAGGCATACCGGGATATATGTATGTCATATGACACTC
**
23267662 CATGAATATTC
131 CACAAATATTC
*
23267673 CAAGTACATGGTTTATTCCTATCTAAGGTTGGGTCTTTTCCAGGTTTAGTATT-TTGATTCTCCG
1 CAAGTACATGGTTTATTCCTATCTAAGGTTGGGCCTTTTCCAGGTTTAGTATTGTTG--T-TCCG
* * ** ** *
23267737 AGTCTTCATTTTGCTCGAAGTCACTGTGTTTGATGCATACCGGGATATATGTATGTCATATGACA
63 ACTCTTCATTTTGCTCAAAGTCACCATGTCCGAGGCATACCGGGATATATGTATGTCATATGACA
23267802 CTCCACAAATATTC
128 CTCCACAAATATTC
*
23267816 CAAATACATGG
1 CAAGTACATGG
23267827 AAAAACTTAG
Statistics
Matches: 132, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
140 3 0.02
141 47 0.36
142 1 0.01
143 81 0.61
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.39
Consensus pattern (141 bp):
CAAGTACATGGTTTATTCCTATCTAAGGTTGGGCCTTTTCCAGGTTTAGTATTGTTGTTCCGACT
CTTCATTTTGCTCAAAGTCACCATGTCCGAGGCATACCGGGATATATGTATGTCATATGACACTC
CACAAATATTC
Found at i:23285196 original size:23 final size:23
Alignment explanation
Indices: 23285166--23285216 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 23
23285156 ACTTAGCCTA
23285166 ATTTTCTT-AAATCTTTTTTATAT
1 ATTTTCTTAAAATCTTTTTT-TAT
23285189 ATTTTCTTGAAAATCTTTTTTTAT
1 ATTTTCTT-AAAATCTTTTTTTAT
23285213 -TTTT
1 ATTTT
23285217 GATTGAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
23 12 0.46
24 3 0.12
25 11 0.42
ACGTcount: A:0.24, C:0.08, G:0.02, T:0.67
Consensus pattern (23 bp):
ATTTTCTTAAAATCTTTTTTTAT
Found at i:23285222 original size:24 final size:25
Alignment explanation
Indices: 23285174--23285224 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
23285164 TAATTTTCTT
*
23285174 AAATCTTTTTTATATATTTTCTTGA
1 AAATCTTTTTTATATATTTTATTGA
23285199 AAATCTTTTTT-TAT-TTTTGATTGA
1 AAATCTTTTTTATATATTTT-ATTGA
23285223 AA
1 AA
23285225 TACTCTAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 4 0.17
24 9 0.38
25 11 0.46
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.59
Consensus pattern (25 bp):
AAATCTTTTTTATATATTTTATTGA
Found at i:23287754 original size:79 final size:81
Alignment explanation
Indices: 23287618--23287800 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
23287608 TCGAATGATG
* *
23287618 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
23287682 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
23287697 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
23287759 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
23287777 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
23287801 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:23287816 original size:40 final size:40
Alignment explanation
Indices: 23287619--23287802 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
23287609 CGAATGATGT
* * * *
23287619 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
23287659 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
23287699 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
23287737 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
23287778 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
23287803 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:23287824 original size:79 final size:79
Alignment explanation
Indices: 23287671--23287835 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
23287661 GGACTAAGAT
* **
23287671 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
23287736 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
23287750 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
23287813 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
23287829 CCGAAGG
1 CCGAAGG
23287836 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:23292176 original size:14 final size:14
Alignment explanation
Indices: 23292157--23292187 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
23292147 TATAGCTCTA
23292157 TCTTAGCTTTGCAT
1 TCTTAGCTTTGCAT
23292171 TCTTAGCTTTGCAT
1 TCTTAGCTTTGCAT
23292185 TCT
1 TCT
23292188 GACTAGAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.13, C:0.23, G:0.13, T:0.52
Consensus pattern (14 bp):
TCTTAGCTTTGCAT
Found at i:23299377 original size:4 final size:4
Alignment explanation
Indices: 23299368--23299395 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
23299358 TGGAAGCTAT
23299368 TTTC TTTC TTTC TTTC TTTC TTTC TTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC
23299396 GTTTTGCATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTC
Found at i:23301146 original size:2 final size:2
Alignment explanation
Indices: 23301139--23301173 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
23301129 AAGAACATGA
* *
23301139 TC TC TC TC TT TC TC TC TC TC TC TC GC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
23301174 ATCTATCTTG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.46, G:0.03, T:0.51
Consensus pattern (2 bp):
TC
Found at i:23302667 original size:18 final size:17
Alignment explanation
Indices: 23302640--23302676 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
23302630 TTAAATATGT
23302640 AAATATAAATATAACAA
1 AAATATAAATATAACAA
*
23302657 AAATAATAAATATATCAA
1 AAAT-ATAAATATAACAA
23302675 AA
1 AA
23302677 TCTAATTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.24
Consensus pattern (17 bp):
AAATATAAATATAACAA
Found at i:23303843 original size:30 final size:32
Alignment explanation
Indices: 23303808--23303874 Score: 86
Period size: 32 Copynumber: 2.2 Consensus size: 32
23303798 AGTCTATATC
*
23303808 TTTATAATTTTTAAA-AGA-TTAAAT-TAAATT
1 TTTAT-ATTTTTAAAGAGACTAAAATATAAATT
*
23303838 TTTATATTTTTAAAGGGACTAAAATATAAATT
1 TTTATATTTTTAAAGAGACTAAAATATAAATT
23303870 TTTAT
1 TTTAT
23303875 CACTATTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
29 9 0.28
30 7 0.22
31 5 0.16
32 11 0.34
ACGTcount: A:0.43, C:0.01, G:0.06, T:0.49
Consensus pattern (32 bp):
TTTATATTTTTAAAGAGACTAAAATATAAATT
Found at i:23309221 original size:38 final size:41
Alignment explanation
Indices: 23309151--23309239 Score: 121
Period size: 39 Copynumber: 2.2 Consensus size: 41
23309141 TAAAAAGTAT
* *
23309151 TTATATTAAAAAACACTACTATAAATATAAT-AATTTTTTA
1 TTATATTAAAAAACACTACAATAAATATAATAAATATTTTA
*
23309191 TTATATTAAAAAATAC-A-AATAAATATAATAAATATTTTA
1 TTATATTAAAAAACACTACAATAAATATAATAAATATTTTA
*
23309230 TTTTATTAAA
1 TTATATTAAA
23309240 TATAATTTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
38 11 0.25
39 18 0.41
40 15 0.34
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (41 bp):
TTATATTAAAAAACACTACAATAAATATAATAAATATTTTA
Found at i:23309392 original size:18 final size:18
Alignment explanation
Indices: 23309348--23309394 Score: 51
Period size: 20 Copynumber: 2.6 Consensus size: 18
23309338 ATTTAATATA
*
23309348 AATATAA-ACATATAATT
1 AATATAATATATATAATT
*
23309365 ATTATTTAATATATATAATT
1 A--ATATAATATATATAATT
23309385 AATATAATAT
1 AATATAATAT
23309395 TTTTTATAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
17 1 0.04
18 8 0.33
19 5 0.21
20 10 0.42
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (18 bp):
AATATAATATATATAATT
Found at i:23311392 original size:14 final size:14
Alignment explanation
Indices: 23311375--23311401 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
23311365 TATAATATCC
23311375 AAATAATAACAATA
1 AAATAATAACAATA
23311389 AAATAATAACAAT
1 AAATAATAACAAT
23311402 TAATAGCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.22
Consensus pattern (14 bp):
AAATAATAACAATA
Found at i:23312837 original size:18 final size:18
Alignment explanation
Indices: 23312810--23312845 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
23312800 TAGAATAAAG
23312810 ATATAAAGAAATCAACAA
1 ATATAAAGAAATCAACAA
*
23312828 ATATACAGAAATCAACAA
1 ATATAAAGAAATCAACAA
23312846 GAAACAGTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.64, C:0.14, G:0.06, T:0.17
Consensus pattern (18 bp):
ATATAAAGAAATCAACAA
Found at i:23319266 original size:2 final size:2
Alignment explanation
Indices: 23319259--23319285 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
23319249 GCAAAATTTG
23319259 AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC A
23319286 ATGTATTTGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:23321845 original size:22 final size:22
Alignment explanation
Indices: 23321790--23321852 Score: 53
Period size: 22 Copynumber: 2.9 Consensus size: 22
23321780 ATAGTTTAAG
* *
23321790 AAATATATACATGAAAACAT-TA
1 AAATATATACAT-AATATATATA
23321812 AAA-ATAAGTACATAATATATATA
1 AAATAT-A-TACATAATATATATA
23321835 AAATATATAC--AATATATA
1 AAATATATACATAATATATA
23321853 CCTATATTAG
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
20 8 0.23
21 2 0.06
22 12 0.34
23 11 0.31
24 2 0.06
ACGTcount: A:0.60, C:0.06, G:0.03, T:0.30
Consensus pattern (22 bp):
AAATATATACATAATATATATA
Found at i:23322086 original size:16 final size:17
Alignment explanation
Indices: 23322044--23322091 Score: 64
Period size: 16 Copynumber: 2.9 Consensus size: 17
23322034 AATGTACGTA
23322044 ATATACATAA-ATATAT
1 ATATACATAATATATAT
23322060 ATATACATAATATA-AT
1 ATATACATAATATATAT
* *
23322076 ATTTACATAATGTATA
1 ATATACATAATATATA
23322092 CATACAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 24 0.86
17 4 0.14
ACGTcount: A:0.52, C:0.06, G:0.02, T:0.40
Consensus pattern (17 bp):
ATATACATAATATATAT
Found at i:23322165 original size:27 final size:28
Alignment explanation
Indices: 23322135--23322210 Score: 86
Period size: 28 Copynumber: 2.8 Consensus size: 28
23322125 AATATATGCG
23322135 TATATATAAAAAATATATATATACAT-A
1 TATATATAAAAAATATATATATACATAA
* *
23322162 TATAATATTAAAAA-ATGTATATACATAA
1 TAT-ATATAAAAAATATATATATACATAA
*
23322190 TATATATGAAAACATA-ATATA
1 TATATAT-AAAAAATATATATA
23322211 GTATTAGAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
27 18 0.45
28 21 0.52
29 1 0.03
ACGTcount: A:0.58, C:0.04, G:0.03, T:0.36
Consensus pattern (28 bp):
TATATATAAAAAATATATATATACATAA
Found at i:23322192 original size:42 final size:39
Alignment explanation
Indices: 23322136--23322262 Score: 105
Period size: 42 Copynumber: 3.1 Consensus size: 39
23322126 ATATATGCGT
* *
23322136 ATATATAAAAAATATATATATACATATATAATATTAAAAA
1 ATATATACATAATATATATA-ACATATATAATATTAAAAA
* *
23322176 ATGTATATACATAATATATATGAAAACATAATATAGTATT-AGAA
1 A--TATATACATAATATATAT---AACAT-ATATAATATTAAAAA
* * *
23322220 ATATATACATGACATATATAA-AGATATAATATTAAAAA
1 ATATATACATAATATATATAACATATATAATATTAAAAA
23322258 GATAT
1 -ATAT
23322263 GTATATATAT
Statistics
Matches: 70, Mismatches: 9, Indels: 17
0.73 0.09 0.18
Matches are distributed among these distances:
37 9 0.13
38 4 0.06
39 6 0.09
40 1 0.01
42 32 0.46
44 8 0.11
45 10 0.14
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.34
Consensus pattern (39 bp):
ATATATACATAATATATATAACATATATAATATTAAAAA
Found at i:23322414 original size:18 final size:19
Alignment explanation
Indices: 23322387--23322423 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
23322377 GTATACACAC
23322387 ACATATATA-TATATAAAAA
1 ACATATATATTAT-TAAAAA
23322406 ACATA-ATATTATTAAAAA
1 ACATATATATTATTAAAAA
23322424 TACGTTCATA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.32
Consensus pattern (19 bp):
ACATATATATTATTAAAAA
Found at i:23322533 original size:15 final size:15
Alignment explanation
Indices: 23322510--23322539 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
23322500 AACACAATAT
*
23322510 ATATGGTATTAAAAA
1 ATATAGTATTAAAAA
23322525 ATATAGTATTAAAAA
1 ATATAGTATTAAAAA
23322540 CATAACATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.10, T:0.33
Consensus pattern (15 bp):
ATATAGTATTAAAAA
Found at i:23322956 original size:20 final size:20
Alignment explanation
Indices: 23322931--23323039 Score: 68
Period size: 20 Copynumber: 5.3 Consensus size: 20
23322921 CTAATAACAT
23322931 TAAAATACATACATAATATA
1 TAAAATACATACATAATATA
*
23322951 TAAAATACATATAATATATATA
1 TAAAATACATA-CATA-ATATA
*
23322973 TTAGAAAT-GATA-ATAATATA
1 -TA-AAATACATACATAATATA
**
23322993 -AAAACTATTCATAC-GCA-ATA
1 TAAAA-TA--CATACATAATATA
23323013 T-AAATACATACATATATATA
1 TAAAATACATACATA-ATATA
23323033 TAAAATA
1 TAAAATA
23323040 ATGATGTTAG
Statistics
Matches: 68, Mismatches: 7, Indels: 27
0.67 0.07 0.26
Matches are distributed among these distances:
17 8 0.12
18 2 0.03
19 3 0.04
20 26 0.38
21 15 0.22
22 5 0.07
23 5 0.07
24 4 0.06
ACGTcount: A:0.57, C:0.08, G:0.03, T:0.32
Consensus pattern (20 bp):
TAAAATACATACATAATATA
Found at i:23322966 original size:18 final size:19
Alignment explanation
Indices: 23322922--23322970 Score: 66
Period size: 18 Copynumber: 2.6 Consensus size: 19
23322912 TATATGTAAC
*
23322922 TAATAACAT-TAAAATACA
1 TAATAATATATAAAATACA
23322940 TACATAATATATAAAATACA
1 TA-ATAATATATAAAATACA
23322960 T-ATAATATATA
1 TAATAATATATA
23322971 TATTAGAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 12 0.43
19 6 0.21
20 10 0.36
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.33
Consensus pattern (19 bp):
TAATAATATATAAAATACA
Found at i:23323063 original size:19 final size:19
Alignment explanation
Indices: 23323039--23323075 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
23323029 TATATAAAAT
*
23323039 AATGATGTTAGAAATATAC
1 AATGATATTAGAAATATAC
23323058 AATGATATTAGAAATATA
1 AATGATATTAGAAATATA
23323076 TATAAAATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.03, G:0.14, T:0.32
Consensus pattern (19 bp):
AATGATATTAGAAATATAC
Found at i:23323173 original size:24 final size:26
Alignment explanation
Indices: 23323129--23323197 Score: 74
Period size: 24 Copynumber: 2.8 Consensus size: 26
23323119 TATAAACAAT
*
23323129 AATATATATAACATACA-ATAT-TGAA
1 AATATATAT-ACATACATATATAGGAA
23323154 AATATATATACATA-ATATATAGGAA
1 AATATATATACATACATATATAGGAA
* *
23323179 AA-ATATATAGATATATATA
1 AATATATATACATACATATA
23323198 ATATAATATT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
23 1 0.03
24 19 0.49
25 19 0.49
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.33
Consensus pattern (26 bp):
AATATATATACATACATATATAGGAA
Found at i:23332343 original size:58 final size:58
Alignment explanation
Indices: 23332234--23332343 Score: 159
Period size: 58 Copynumber: 1.9 Consensus size: 58
23332224 CTTCAGACTA
* * *
23332234 GTTGGTGAATTTAATTGAGTTGTTTTTTTTTTTAATTTGCATTAAAGAATTTTAAATT
1 GTTGGTGAATTTAATTGAGTTGTTTTTATTTTTAATTTACATCAAAGAATTTTAAATT
* *
23332292 GTTGGTGAATTTAATTGGGTTGCTTTTTATTTTTAATTTATATCAAA-AATTT
1 GTTGGTGAATTTAATTGAGTTG-TTTTTATTTTTAATTTACATCAAAGAATTT
23332344 AAAAAGTTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
58 26 0.57
59 20 0.43
ACGTcount: A:0.27, C:0.03, G:0.15, T:0.55
Consensus pattern (58 bp):
GTTGGTGAATTTAATTGAGTTGTTTTTATTTTTAATTTACATCAAAGAATTTTAAATT
Found at i:23332673 original size:26 final size:26
Alignment explanation
Indices: 23332607--23332699 Score: 84
Period size: 26 Copynumber: 3.6 Consensus size: 26
23332597 AACATGTGAC
* *
23332607 AAAAAAAA-ATAAAAA-AATAAAATT
1 AAAAAAAATATAAAAATATTTAAATT
** *
23332631 AATAAAAGTTATAAAAAGTA-TTAATTTT
1 AA-AAAAAATATAAAAA-TATTTAA-ATT
*
23332659 AACAAAAATATAAAAATATTTAAATT
1 AAAAAAAATATAAAAATATTTAAATT
23332685 AAAAAAAATATAAAA
1 AAAAAAAATATAAAA
23332700 TCGTAAAAAA
Statistics
Matches: 54, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
24 2 0.04
25 4 0.07
26 25 0.46
27 18 0.33
28 5 0.09
ACGTcount: A:0.70, C:0.01, G:0.02, T:0.27
Consensus pattern (26 bp):
AAAAAAAATATAAAAATATTTAAATT
Found at i:23332700 original size:17 final size:17
Alignment explanation
Indices: 23332686--23332734 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
23332676 ATTTAAATTA
23332686 AAAAAAATATAAAATCGT
1 AAAAAAATATAAAATC-T
* *
23332704 AAAAAATTATAAAATAT
1 AAAAAAATATAAAATCT
* *
23332721 ATAGAAATATAAAA
1 AAAAAAATATAAAA
23332735 AAATATATAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
17 12 0.46
18 14 0.54
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.24
Consensus pattern (17 bp):
AAAAAAATATAAAATCT
Found at i:23332710 original size:27 final size:27
Alignment explanation
Indices: 23332657--23332736 Score: 74
Period size: 27 Copynumber: 3.0 Consensus size: 27
23332647 AGTATTAATT
* * **
23332657 TTAACAAAAATATAAAAATAT-TTAAA
1 TTAAAAAAAATATAGAAATATAAAAAA
*
23332683 TTAAAAAAAATATA-AAATCGTAAAAAA
1 TTAAAAAAAATATAGAAAT-ATAAAAAA
* *
23332710 TTATAAAATATATAGAAATATAAAAAA
1 TTAAAAAAAATATAGAAATATAAAAAA
23332737 ATATATAAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
25 4 0.09
26 14 0.32
27 22 0.50
28 4 0.09
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.28
Consensus pattern (27 bp):
TTAAAAAAAATATAGAAATATAAAAAA
Found at i:23332997 original size:10 final size:10
Alignment explanation
Indices: 23332984--23333059 Score: 55
Period size: 10 Copynumber: 7.5 Consensus size: 10
23332974 ATTTTTTGGA
23332984 TTTTTATTAT
1 TTTTTATTAT
* *
23332994 TTTTTATAAA
1 TTTTTATTAT
*
23333004 TTTTTATTAA
1 TTTTTATTAT
** * *
23333014 AATTTAATAA
1 TTTTTATTAT
*
23333024 TTTTTATAATT
1 TTTTTATTA-T
23333035 TTTTTATT-T
1 TTTTTATTAT
23333044 TTATTTATTAT
1 TT-TTTATTAT
23333055 TTTTT
1 TTTTT
23333060 TACCACATGT
Statistics
Matches: 51, Mismatches: 12, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
9 3 0.06
10 38 0.75
11 10 0.20
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (10 bp):
TTTTTATTAT
Found at i:23333057 original size:30 final size:29
Alignment explanation
Indices: 23332986--23333058 Score: 74
Period size: 30 Copynumber: 2.4 Consensus size: 29
23332976 TTTTTGGATT
23332986 TTTATTATTTTTTATAAATTTTTATTAAAA
1 TTTATTA-TTTTTATAAATTTTTATTAAAA
* * ***
23333016 TTTAATAATTTTTATAATTTTTTTATTTTTA
1 TTT-ATTATTTTTATAA-ATTTTTATTAAAA
23333047 TTTATTATTTTT
1 TTTATTATTTTT
23333059 TTACCACATG
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
30 20 0.57
31 15 0.43
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (29 bp):
TTTATTATTTTTATAAATTTTTATTAAAA
Found at i:23334454 original size:32 final size:33
Alignment explanation
Indices: 23334389--23334454 Score: 80
Period size: 32 Copynumber: 2.0 Consensus size: 33
23334379 CAACCCAATT
* *
23334389 TAAAATTAAATTATACAAAAAATATATATTTTAG
1 TAAAATTAAATTATA-AAAAAATATAAAATTTAG
* *
23334423 TAAAATTGAATTAT-AAATAATATAAAATTTAG
1 TAAAATTAAATTATAAAAAAATATAAAATTTAG
23334455 AGTAAATTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
32 15 0.54
34 13 0.46
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.38
Consensus pattern (33 bp):
TAAAATTAAATTATAAAAAAATATAAAATTTAG
Done.