Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91551117
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2824764 characters in sequence are not A, C, G, or T
File 84 of 276
Found at i:26028474 original size:21 final size:21
Alignment explanation
Indices: 26028450--26028494 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
26028440 AATGAAATTT
26028450 AGCAAATAAACAAATAAATAA
1 AGCAAATAAACAAATAAATAA
26028471 AGCAAATAAACAAATAAATAA
1 AGCAAATAAACAAATAAATAA
26028492 AGC
1 AGC
26028495 GATATTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.69, C:0.11, G:0.07, T:0.13
Consensus pattern (21 bp):
AGCAAATAAACAAATAAATAA
Found at i:26028478 original size:13 final size:12
Alignment explanation
Indices: 26028453--26028492 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
26028443 GAAATTTAGC
26028453 AAATAAACAAAT
1 AAATAAACAAAT
26028465 AAATAAAGCAAAT
1 AAATAAA-CAAAT
* *
26028478 AAACAAATAAAT
1 AAATAAACAAAT
26028490 AAA
1 AAA
26028493 GCGATATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 14 0.56
13 11 0.44
ACGTcount: A:0.75, C:0.07, G:0.03, T:0.15
Consensus pattern (12 bp):
AAATAAACAAAT
Found at i:26028593 original size:29 final size:30
Alignment explanation
Indices: 26028546--26028602 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 30
26028536 TAATAACAAA
26028546 ATAAATGAAAAAAAGAAAAAAAAAGAATAT
1 ATAAATGAAAAAAAGAAAAAAAAAGAATAT
* * * *
26028576 ATAAA-GAATAAAATAAAATAATAGAAT
1 ATAAATGAAAAAAAGAAAAAAAAAGAAT
26028603 CTAATAATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
29 18 0.78
30 5 0.22
ACGTcount: A:0.74, C:0.00, G:0.09, T:0.18
Consensus pattern (30 bp):
ATAAATGAAAAAAAGAAAAAAAAAGAATAT
Found at i:26028660 original size:3 final size:3
Alignment explanation
Indices: 26028652--26028736 Score: 80
Period size: 3 Copynumber: 28.0 Consensus size: 3
26028642 TAGTTTTAAG
* * * * *
26028652 AAT AAT AAT TAT AAC AAT AAT GAT AAT GAT AAT AAT AAT ACT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
26028700 AAT AAT GAT AAC AAT AAT AAGA AAT AAT AAT AGT AAT
1 AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT
26028737 TAATTAATTT
Statistics
Matches: 63, Mismatches: 18, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
3 61 0.97
4 2 0.03
ACGTcount: A:0.60, C:0.04, G:0.06, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:26030845 original size:51 final size:51
Alignment explanation
Indices: 26030790--26030957 Score: 273
Period size: 51 Copynumber: 3.3 Consensus size: 51
26030780 TTGATCACAT
*
26030790 TTATCACTTGTCACTTGTCACTGATCAAATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
* * *
26030841 TTATCACTTTTCACTTGTCACTGATCAGTTAAGTGTAGCTAAAGTTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
* * *
26030892 TTATCACTTGTCACTTGTTACTGATCAGATAAGTGTAGCTGAGGCTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
26030943 TTATCACTTGTCACT
1 TTATCACTTGTCACT
26030958 GATTAGAAGT
Statistics
Matches: 107, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 107 1.00
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (51 bp):
TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
Found at i:26032285 original size:11 final size:11
Alignment explanation
Indices: 26032256--26032286 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
26032246 CATAAAAATT
*
26032256 TCAAGAAATAA
1 TCAAGAATTAA
26032267 TCAAGAATTAA
1 TCAAGAATTAA
26032278 TCAAGAATT
1 TCAAGAATT
26032287 GAACTTACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.55, C:0.10, G:0.10, T:0.26
Consensus pattern (11 bp):
TCAAGAATTAA
Found at i:26033942 original size:3 final size:3
Alignment explanation
Indices: 26033936--26033967 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
26033926 CCTAAAGTCT
26033936 CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CT
1 CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CT
26033968 TGCATCCTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.34, G:0.31, T:0.34
Consensus pattern (3 bp):
CTG
Found at i:26038800 original size:51 final size:50
Alignment explanation
Indices: 26038729--26038888 Score: 248
Period size: 51 Copynumber: 3.2 Consensus size: 50
26038719 CTGATCACAT
26038729 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCAC
* *
26038780 TTATCACTTGTCACTGATCAGATAAGAGTAGCTAAGCTACCACTTATCAT
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTACCACTTATCAC
* * *
26038830 TTGTCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCAC
*
26038881 TTGTCACT
1 TTATCACT
26038889 GATCAGAAGT
Statistics
Matches: 101, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
50 46 0.46
51 55 0.54
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (50 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTACCACTTATCAC
Found at i:26043927 original size:53 final size:54
Alignment explanation
Indices: 26043864--26044020 Score: 221
Period size: 53 Copynumber: 3.0 Consensus size: 54
26043854 AGGCTATTAC
*
26043864 AATCACATTATCACATCACACCGACGCTATAGCCCAGCTATGGTCTTATAC-AG
1 AATCACATTATCACATCACACCGACGCCATAGCCCAGCTATGGTCTTATACGAG
* * *
26043917 AATCACATTATCACATCATACCGGCGCCATAGCCCAGCTATGGTCTTATACGGG
1 AATCACATTATCACATCACACCGACGCCATAGCCCAGCTATGGTCTTATACGAG
* * * *
26043971 AA-CACA-TATCACATTACACCGATGCCATAGCTCAGATATGGTCTTATACG
1 AATCACATTATCACATCACACCGACGCCATAGCCCAGCTATGGTCTTATACG
26044021 GGCGCACATA
Statistics
Matches: 93, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
52 38 0.41
53 52 0.56
54 3 0.03
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (54 bp):
AATCACATTATCACATCACACCGACGCCATAGCCCAGCTATGGTCTTATACGAG
Found at i:26044011 original size:52 final size:53
Alignment explanation
Indices: 26043867--26044037 Score: 222
Period size: 52 Copynumber: 3.3 Consensus size: 53
26043857 CTATTACAAT
* *
26043867 CACATTATCACATCACACCGACGCTATAGCCCAGCTATGGTCTTATAC-AGAA
1 CACATTATCACATCACACCGACGCCATAGCCCAGCTATGGTCTTATACGGGAA
* *
26043919 TCACATTATCACATCATACCGGCGCCATAGCCCAGCTATGGTCTTATACGGGAA
1 -CACATTATCACATCACACCGACGCCATAGCCCAGCTATGGTCTTATACGGGAA
* * * * **
26043973 CACA-TATCACATTACACCGATGCCATAGCTCAGATATGGTCTTATACGGGCG
1 CACATTATCACATCACACCGACGCCATAGCCCAGCTATGGTCTTATACGGGAA
26044025 CACA-TATCACATC
1 CACATTATCACATC
26044038 TTTTCCGTCA
Statistics
Matches: 104, Mismatches: 13, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
52 52 0.50
53 49 0.47
54 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.24
Consensus pattern (53 bp):
CACATTATCACATCACACCGACGCCATAGCCCAGCTATGGTCTTATACGGGAA
Found at i:26044704 original size:34 final size:34
Alignment explanation
Indices: 26044666--26044734 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
26044656 TTCAGCACTT
26044666 AGTCATGGAAACTTTCGAAATTACCCATGAAATC
1 AGTCATGGAAACTTTCGAAATTACCCATGAAATC
26044700 AGTCATGGAAACTTTCGAAATTACCCATGAAATC
1 AGTCATGGAAACTTTCGAAATTACCCATGAAATC
26044734 A
1 A
26044735 AAAACTAATG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.26
Consensus pattern (34 bp):
AGTCATGGAAACTTTCGAAATTACCCATGAAATC
Found at i:26045287 original size:17 final size:18
Alignment explanation
Indices: 26045254--26045287 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26045244 TTTTATCTTA
*
26045254 TTTAATTTATAAATTTCC
1 TTTAATTCATAAATTTCC
26045272 TTTAATTCAT-AATTTC
1 TTTAATTCATAAATTTC
26045288 ACTAATTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.32, C:0.12, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTAATTCATAAATTTCC
Found at i:26048478 original size:16 final size:16
Alignment explanation
Indices: 26048456--26048524 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
26048446 TTTGGTTCGC
26048456 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
26048472 CGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
26048488 TGTATTGAGATTAGAGG
1 TGTATTG-GATTAGAGG
26048505 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
26048521 TGTA
1 TGTA
26048525 ATAGCTAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.26, C:0.01, G:0.36, T:0.36
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:26048502 original size:33 final size:32
Alignment explanation
Indices: 26048456--26048524 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
26048446 TTTGGTTCGC
26048456 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
*
26048488 TGTATTGAGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTG-GATTAGAGGCGTATTGGATTAGAGG
26048521 TGTA
1 TGTA
26048525 ATAGCTAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 7 0.20
33 28 0.80
ACGTcount: A:0.26, C:0.01, G:0.36, T:0.36
Consensus pattern (32 bp):
TGTATTGGATTAGAGGCGTATTGGATTAGAGG
Found at i:26048589 original size:44 final size:45
Alignment explanation
Indices: 26048505--26048595 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
26048495 AGATTAGAGG
* * *
26048505 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
26048550 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
26048594 TG
1 TG
26048596 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:26048781 original size:18 final size:17
Alignment explanation
Indices: 26048760--26048794 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26048750 TTATTATTAA
*
26048760 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
26048778 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
26048795 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:26048956 original size:120 final size:120
Alignment explanation
Indices: 26048743--26049005 Score: 508
Period size: 120 Copynumber: 2.2 Consensus size: 120
26048733 ATCATATTTA
26048743 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
26048808 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
26048863 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
26048928 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
26048983 AACATAATTATTATTAAATATAT
1 AACATAATTATTATTAAATATAT
26049006 AACTTGAAAA
Statistics
Matches: 141, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 141 1.00
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.44
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:26049356 original size:18 final size:18
Alignment explanation
Indices: 26049333--26049392 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
26049323 TTAAAACAAG
26049333 TTACATTCTATATTAGAA
1 TTACATTCTATATTAGAA
*** * *
26049351 TTACATAAGAAAATT-G-T
1 TTACAT-TCTATATTAGAA
26049368 TTACATTCTATATTAGAA
1 TTACATTCTATATTAGAA
26049386 TTACATT
1 TTACATT
26049393 AGAATTACAT
Statistics
Matches: 29, Mismatches: 10, Indels: 6
0.64 0.22 0.13
Matches are distributed among these distances:
16 4 0.14
17 7 0.24
18 14 0.48
19 4 0.14
ACGTcount: A:0.40, C:0.10, G:0.07, T:0.43
Consensus pattern (18 bp):
TTACATTCTATATTAGAA
Found at i:26053389 original size:39 final size:39
Alignment explanation
Indices: 26053335--26053411 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
26053325 AGGATTCGAT
*
26053335 TTAATTCCTAATTTGCTCTTGGAATTTATAGTAATTATA
1 TTAATTCCTAATTTGCTCTTGAAATTTATAGTAATTATA
26053374 TTAATTCCTAATTTGCTCTTGAAATTTATAGTAATTAT
1 TTAATTCCTAATTTGCTCTTGAAATTTATAGTAATTAT
26053412 TGAATATAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.31, C:0.10, G:0.09, T:0.49
Consensus pattern (39 bp):
TTAATTCCTAATTTGCTCTTGAAATTTATAGTAATTATA
Found at i:26057554 original size:17 final size:18
Alignment explanation
Indices: 26057532--26057570 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
26057522 TAATTTTTTG
*
26057532 AAAAATAATTT-TACAAA
1 AAAAATAATTTGAACAAA
*
26057549 AAAAATTATTTGAACAAA
1 AAAAATAATTTGAACAAA
26057567 AAAA
1 AAAA
26057571 TTATTTTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.67, C:0.05, G:0.03, T:0.26
Consensus pattern (18 bp):
AAAAATAATTTGAACAAA
Found at i:26060600 original size:10 final size:10
Alignment explanation
Indices: 26060573--26060631 Score: 84
Period size: 10 Copynumber: 5.9 Consensus size: 10
26060563 TTAAATTCTA
26060573 AAAGATAAAT
1 AAAGATAAAT
26060583 ACAA-ATAAAT
1 A-AAGATAAAT
*
26060593 AAAGATAATT
1 AAAGATAAAT
26060603 AAAGATAAAT
1 AAAGATAAAT
*
26060613 AAGGATAAAT
1 AAAGATAAAT
26060623 AAAGATAAA
1 AAAGATAAA
26060632 AGCTAAAATT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
9 2 0.05
10 39 0.91
11 2 0.05
ACGTcount: A:0.68, C:0.02, G:0.10, T:0.20
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:26064486 original size:23 final size:22
Alignment explanation
Indices: 26064444--26064486 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
26064434 ACTTCTTTAC
* *
26064444 AAAAATACTTTTTAGTAAAATA
1 AAAAATACTTTTCAATAAAATA
26064466 AAAAATACTTTTCAATCAAAA
1 AAAAATACTTTTCAAT-AAAA
26064487 AGGAAAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.56, C:0.09, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAAATACTTTTCAATAAAATA
Found at i:26066385 original size:31 final size:30
Alignment explanation
Indices: 26066344--26066401 Score: 80
Period size: 31 Copynumber: 1.9 Consensus size: 30
26066334 ATAATCCTTG
* *
26066344 TTTGGTCATTATTTGAGCAATTTTGAAAAGA
1 TTTGGCCATTATTTAAGC-ATTTTGAAAAGA
*
26066375 TTTGGCCATTATTTAATCATTTTGAAA
1 TTTGGCCATTATTTAAGCATTTTGAAA
26066402 GGTTTGCCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 9 0.38
31 15 0.62
ACGTcount: A:0.31, C:0.09, G:0.16, T:0.45
Consensus pattern (30 bp):
TTTGGCCATTATTTAAGCATTTTGAAAAGA
Found at i:26067074 original size:30 final size:30
Alignment explanation
Indices: 26067029--26067087 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
26067019 CTTAACAAGA
*
26067029 AAATACCTCTAAAATAATAATAAAATTAAC
1 AAATACCTCTAAAATAATAACAAAATTAAC
* *
26067059 AAATGCCTTTAAAATAATAACAAAATTAA
1 AAATACCTCTAAAATAATAACAAAATTAA
26067088 TAATAAAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.59, C:0.12, G:0.02, T:0.27
Consensus pattern (30 bp):
AAATACCTCTAAAATAATAACAAAATTAAC
Found at i:26069906 original size:2 final size:2
Alignment explanation
Indices: 26069899--26069929 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
26069889 CCAAAGTGAG
26069899 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
26069930 AAAGTTTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:26070442 original size:3 final size:3
Alignment explanation
Indices: 26070436--26070477 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
26070426 TAACAACAAC
26070436 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
26070478 GATGATGATG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:26071995 original size:5 final size:5
Alignment explanation
Indices: 26071985--26072011 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
26071975 GGGCCTTACA
26071985 ATTAT ATTAT ATTAT ATTAT ATTAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT AT
26072012 AAACTAAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:26073352 original size:18 final size:19
Alignment explanation
Indices: 26073329--26073367 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
26073319 ATATATAGAT
26073329 ATATATATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
26073347 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
26073366 AT
1 AT
26073368 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Found at i:26073717 original size:39 final size:39
Alignment explanation
Indices: 26073607--26073741 Score: 112
Period size: 39 Copynumber: 3.4 Consensus size: 39
26073597 GACCTCGAGT
* * * *
26073607 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AATATTACTTCGGCTAG-TC
** ** * *
26073648 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
* *
26073686 CGATGAGACACTGGGTGTCAAATATTGCTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAAATATTACTTCG-GCTAGTC
*
26073725 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
26073742 CCATATTGGT
Statistics
Matches: 73, Mismatches: 19, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
Found at i:26073885 original size:18 final size:19
Alignment explanation
Indices: 26073864--26073904 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
26073854 AATGAAATGA
26073864 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
26073882 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
26073901 GAAA
1 GAAA
26073905 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:26079398 original size:42 final size:42
Alignment explanation
Indices: 26079335--26079498 Score: 195
Period size: 42 Copynumber: 3.7 Consensus size: 42
26079325 CTTCGTTTTC
** *
26079335 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATCTTCACAT-A
* *
26079378 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATCTTCACATA
26079419 TCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC---AT--C-T-TCACATA
*
26079468 TCGATGCCATATCCCAGCTATGGTCTTACAC
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC
26079499 GAGTCACATA
Statistics
Matches: 105, Mismatches: 8, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
41 2 0.02
42 63 0.60
43 1 0.01
45 2 0.02
48 1 0.01
49 36 0.34
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATCTTCACATA
Found at i:26079485 original size:91 final size:94
Alignment explanation
Indices: 26079370--26079687 Score: 275
Period size: 94 Copynumber: 3.4 Consensus size: 94
26079360 TTACACATCT
*
26079370 TCACATAAT-GATGCCATAGCCCAGCTATGGTCTTACAC-A-T-ATTCATATAT-C-GATGCCAT
1 TCACAT-ATCGATGCCATATCCCAGCTATGGTCTTACACGAGTCA--CATATATACTGATGCCAT
* *
26079429 AGCCCAGCTATGGTCTTACAC-GTAATCACATA
63 AGCCCAGATATGGTCTTACACAGT-AGCACATA
* *
26079461 TCACATATCGATGCCATATCCCAGCTATGGTCTTACACGAGTCACATATCTCACTGATGCCATAT
1 TCACATATCGATGCCATATCCCAGCTATGGTCTTACACGAGTCACATATAT-ACTGATGCCATAG
* *
26079526 CCCAGATATGGTCTTATACAGTAGCATATA
65 CCCAGATATGGTCTTACACAGTAGCACATA
* * * * * *
26079556 TCAC--ACCGATGCCATATCCCAGATATGGTCTTATACGGAAATCAC-T-TGTCACTTGTTGCCA
1 TCACATATCGATGCCATATCCCAGCTATGGTCTTACAC-G-AGTCACATATAT-AC-TGATGCCA
* * * *
26079617 TATCCCAGATATGGTCTTATACGGTAGCATATA
62 TAGCCCAGATATGGTCTTACACAGTAGCACATA
* * * *
26079650 T--CATACCGATGCCATATCCTAGATATGGTCTTATACGA
1 TCACATATCGATGCCATATCCCAGCTATGGTCTTACACGA
26079688 AAATCACTTG
Statistics
Matches: 199, Mismatches: 15, Indels: 25
0.83 0.06 0.10
Matches are distributed among these distances:
90 2 0.01
91 34 0.17
92 9 0.05
93 36 0.18
94 75 0.38
95 41 0.21
96 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.30
Consensus pattern (94 bp):
TCACATATCGATGCCATATCCCAGCTATGGTCTTACACGAGTCACATATATACTGATGCCATAGC
CCAGATATGGTCTTACACAGTAGCACATA
Found at i:26079575 original size:47 final size:46
Alignment explanation
Indices: 26079420--26079686 Score: 261
Period size: 47 Copynumber: 5.7 Consensus size: 46
26079410 ATTCATATAT
* * * * * *
26079420 CGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATAT
1 CGATGCCATATCCCAGATATGGTCTTATACGT-AGCATATATCAC--AC
* * * *
26079469 CGATGCCATATCCCAGCTATGGTCTTACACG-AGTCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTATACGTAG-CATATATCACAC
*
26079515 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTATAC-GTAGCATATATCACAC
* * * *
26079562 CGATGCCATATCCCAGATATGGTCTTATACGGA-AATCACTTGTCAC-T
1 CGATGCCATATCCCAGATATGGTCTTATACGTAGCAT-A--TATCACAC
* * *
26079609 TGTTGCCATATCCCAGATATGGTCTTATACGGTAGCATATATCATAC
1 CGATGCCATATCCCAGATATGGTCTTATAC-GTAGCATATATCACAC
*
26079656 CGATGCCATATCCTAGATATGGTCTTATACG
1 CGATGCCATATCCCAGATATGGTCTTATACG
26079687 AAAATCACTT
Statistics
Matches: 185, Mismatches: 24, Indels: 21
0.80 0.10 0.09
Matches are distributed among these distances:
45 2 0.01
46 36 0.19
47 96 0.52
48 19 0.10
49 32 0.17
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (46 bp):
CGATGCCATATCCCAGATATGGTCTTATACGTAGCATATATCACAC
Found at i:26079647 original size:94 final size:93
Alignment explanation
Indices: 26079423--26079705 Score: 356
Period size: 94 Copynumber: 3.0 Consensus size: 93
26079413 CATATATCGA
* * * * * * *
26079423 TGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATATCGATGCCATATCCCAGCTA
1 TGCCATATCCCAGATATGGTCTTATACGT-AGCATATATCAC--ACCGATGCCATATCCCAGATA
* * * *
26079488 TGGTCTTACAC-G-AGTCACATATCTCAC-TGA
63 TGGTCTTATACGGAAATCAC-T-TGTCACTTGT
26079518 TGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACACCGATGCCATATCCCAGATATG
1 TGCCATATCCCAGATATGGTCTTATAC-GTAGCATATATCACACCGATGCCATATCCCAGATATG
26079583 GTCTTATACGGAAATCACTTGTCACTTGT
65 GTCTTATACGGAAATCACTTGTCACTTGT
* *
26079612 TGCCATATCCCAGATATGGTCTTATACGGTAGCATATATCATACCGATGCCATATCCTAGATATG
1 TGCCATATCCCAGATATGGTCTTATAC-GTAGCATATATCACACCGATGCCATATCCCAGATATG
*
26079677 GTCTTATACGAAAATCACTTGTCACTTGT
65 GTCTTATACGGAAATCACTTGTCACTTGT
26079706 AGTGTAACAC
Statistics
Matches: 169, Mismatches: 15, Indels: 9
0.88 0.08 0.05
Matches are distributed among these distances:
93 34 0.20
94 94 0.56
95 39 0.23
96 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (93 bp):
TGCCATATCCCAGATATGGTCTTATACGTAGCATATATCACACCGATGCCATATCCCAGATATGG
TCTTATACGGAAATCACTTGTCACTTGT
Found at i:26089881 original size:13 final size:13
Alignment explanation
Indices: 26089865--26089897 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
26089855 TTTAATTAAA
*
26089865 TTAGTTAATTAGT
1 TTAGATAATTAGT
26089878 TTAGATAATTAGT
1 TTAGATAATTAGT
26089891 TTA-ATAA
1 TTAGATAA
26089898 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:26113236 original size:45 final size:46
Alignment explanation
Indices: 26113172--26113284 Score: 210
Period size: 45 Copynumber: 2.5 Consensus size: 46
26113162 AGTACCTCAT
26113172 GTCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTCCC
1 GTCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCC
*
26113217 GTCATGTTTCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCC
1 GTCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCC
26113263 GTCATGTTGCCATGGTATCTTT
1 GTCATGTTGCCATGGTATCTTT
26113285 AAAACCTAAA
Statistics
Matches: 65, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
45 39 0.60
46 26 0.40
ACGTcount: A:0.17, C:0.25, G:0.16, T:0.42
Consensus pattern (46 bp):
GTCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCC
Found at i:26113311 original size:15 final size:14
Alignment explanation
Indices: 26113293--26113335 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
26113283 TTAAAACCTA
*
26113293 AAACTCTAAACCCC
1 AAACCCTAAACCCC
*
26113307 TAAACCCTAAAACCAC
1 -AAACCCT-AAACCCC
26113323 AAACCCTAAACCC
1 AAACCCTAAACCC
26113336 GCGAACCTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
14 5 0.21
15 13 0.54
16 6 0.25
ACGTcount: A:0.47, C:0.42, G:0.00, T:0.12
Consensus pattern (14 bp):
AAACCCTAAACCCC
Found at i:26115804 original size:21 final size:20
Alignment explanation
Indices: 26115778--26115833 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 20
26115768 ATGAGGATCA
*
26115778 TTAATTTTATTTGTTTTCGTT
1 TTAATTTTATTTCTTTTC-TT
*
26115799 TTAATTTTCTTTTCTTTTCTT
1 TTAATTTT-ATTTCTTTTCTT
26115820 TT-ATGTTTATTTCT
1 TTAAT-TTTATTTCT
26115834 CTTTTTAGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
20 7 0.23
21 15 0.50
22 8 0.27
ACGTcount: A:0.12, C:0.09, G:0.05, T:0.73
Consensus pattern (20 bp):
TTAATTTTATTTCTTTTCTT
Found at i:26117776 original size:30 final size:29
Alignment explanation
Indices: 26117736--26117799 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
26117726 GTTATTTTTA
* *
26117736 TTATTCTATATTTTACT-TATAAATTATATT
1 TTATTATATATTTCA-TATATAAATTAT-TT
*
26117766 TTATTATATATTTCATATATATATTATTT
1 TTATTATATATTTCATATATAAATTATTT
26117795 TTATT
1 TTATT
26117800 TTAAATTATG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 8 0.27
30 22 0.73
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (29 bp):
TTATTATATATTTCATATATAAATTATTT
Found at i:26126383 original size:39 final size:39
Alignment explanation
Indices: 26126337--26126425 Score: 160
Period size: 39 Copynumber: 2.3 Consensus size: 39
26126327 AACCCGAAAT
**
26126337 CTAACTGAAGCACATAAGTGCTAAATGGAAGCCCGAAGG
1 CTAACTGAAGCACATAAGTGCTAAACAGAAGCCCGAAGG
26126376 CTAACTGAAGCACATAAGTGCTAAACAGAAGCCCGAAGG
1 CTAACTGAAGCACATAAGTGCTAAACAGAAGCCCGAAGG
26126415 CTAACTGAAGC
1 CTAACTGAAGC
26126426 TCATCAGAGC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 48 1.00
ACGTcount: A:0.39, C:0.22, G:0.24, T:0.15
Consensus pattern (39 bp):
CTAACTGAAGCACATAAGTGCTAAACAGAAGCCCGAAGG
Found at i:26126407 original size:21 final size:21
Alignment explanation
Indices: 26126343--26126407 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
26126333 AAATCTAACT
**
26126343 GAAGCACATAAGTGCTAAATG
1 GAAGCACATAAGTGCTAAACA
** *
26126364 GAAGC-CCGAAG-GCT-AACT
1 GAAGCACATAAGTGCTAAACA
26126382 GAAGCACATAAGTGCTAAACA
1 GAAGCACATAAGTGCTAAACA
26126403 GAAGC
1 GAAGC
26126408 CCGAAGGCTA
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
18 7 0.21
19 7 0.21
20 7 0.21
21 13 0.38
ACGTcount: A:0.42, C:0.20, G:0.25, T:0.14
Consensus pattern (21 bp):
GAAGCACATAAGTGCTAAACA
Found at i:26128935 original size:18 final size:20
Alignment explanation
Indices: 26128910--26128956 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
26128900 AAATAATAAT
* *
26128910 AAATAATAAAATATCTCATTA
1 AAATAAT-ATATATCTAATTA
26128931 AAATAATATATATCTAATT-
1 AAATAATATATATCTAATTA
26128950 AAATAAT
1 AAATAAT
26128957 CATAAAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 7 0.29
20 10 0.42
21 7 0.29
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.36
Consensus pattern (20 bp):
AAATAATATATATCTAATTA
Found at i:26128943 original size:20 final size:20
Alignment explanation
Indices: 26128888--26128956 Score: 65
Period size: 18 Copynumber: 3.6 Consensus size: 20
26128878 TTATACTAAA
* *
26128888 TAATT-AATAATGAAATA-A
1 TAATTAAATAATAAAATATC
26128906 TAA-TAAATAATAAAATATC
1 TAATTAAATAATAAAATATC
* *
26128925 TCATTAAAATAAT-ATATATC
1 TAATT-AAATAATAAAATATC
26128945 TAATTAAATAAT
1 TAATTAAATAAT
26128957 CATAAAATAT
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
17 1 0.02
18 14 0.33
19 9 0.21
20 11 0.26
21 7 0.17
ACGTcount: A:0.58, C:0.04, G:0.01, T:0.36
Consensus pattern (20 bp):
TAATTAAATAATAAAATATC
Found at i:26132114 original size:15 final size:15
Alignment explanation
Indices: 26132087--26132130 Score: 52
Period size: 17 Copynumber: 2.7 Consensus size: 15
26132077 ATATATATAT
*
26132087 ATAAAAAGTAAAAGGA
1 ATAAAAAG-AAAAAGA
26132103 ATAAAAAGAAAAAGA
1 ATAAAAAGAAAAAGA
26132118 ATAGAAAAAGAAA
1 AT--AAAAAGAAA
26132131 GAAAGGATGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 8 0.32
16 8 0.32
17 9 0.36
ACGTcount: A:0.75, C:0.00, G:0.16, T:0.09
Consensus pattern (15 bp):
ATAAAAAGAAAAAGA
Found at i:26134176 original size:46 final size:46
Alignment explanation
Indices: 26134124--26134399 Score: 342
Period size: 46 Copynumber: 6.0 Consensus size: 46
26134114 GCTTTCTGAA
*
26134124 ATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
26134170 ATAAAATGTGTAAGACTATGGTTGAAAGATACCATGGTAACATG--
1 ATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
26134214 ATGAAATGTGTAACACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
26134260 ATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAC
1 ATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * *
26134306 ATGAAAA-GAATAAGACCGTGGTTGAAAGATACCAGGGCAACATGAC
1 AT-AAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * *
26134352 AGAAAATGAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATAAAATG--T--GTAAGACCATGGTTGAAAGATACCATGGCAACATG
26134400 TAAAAGATAA
Statistics
Matches: 198, Mismatches: 24, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
44 40 0.20
45 4 0.02
46 122 0.62
47 4 0.02
50 28 0.14
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
ATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:26134241 original size:90 final size:91
Alignment explanation
Indices: 26134127--26134399 Score: 359
Period size: 90 Copynumber: 3.0 Consensus size: 91
26134117 TTCTGAAATA
*
26134127 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATAAAATGTGTAAGACTATGGT
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATAAAATGTGTAAGACCATGGT
*
26134192 TGAAAGATACCATGGTAACATG-ATG
66 TGAAAGATACCATGGCAACATGAATG
*
26134217 AAATGTGTAACACCATGGTTGAAAGATACCATGGCAACATGATATAAAATGTGTAAGACCATGGT
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATAAAATGTGTAAGACCATGGT
*
26134282 TGAAAGATACCATGGCAACCTGACATG
66 TGAAAGATACCATGGCAACATGA-ATG
* ** * * * *
26134309 AAAAGAATAAGACCGTGGTTGAAAGATACCAGGGCAACATGACAGAAAATGAATGAGTAAGACCA
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATAAAATG--T--GTAAGACCA
* * * *
26134374 TAGTTGAAAGACACTATGGCATCATG
62 TGGTTGAAAGATACCATGGCAACATG
26134400 TAAAAGATAA
Statistics
Matches: 160, Mismatches: 17, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
90 83 0.52
92 46 0.29
94 1 0.01
96 30 0.19
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (91 bp):
AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATAAAATGTGTAAGACCATGGT
TGAAAGATACCATGGCAACATGAATG
Found at i:26138127 original size:35 final size:35
Alignment explanation
Indices: 26138088--26138157 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
26138078 AATCCTTGGC
26138088 CAGCTAGTTCCTTTCTGTTTATCCTCCAGCACACA
1 CAGCTAGTTCCTTTCTGTTTATCCTCCAGCACACA
*
26138123 CAGCTAGTTCCTTTTTGTTTATCCTCCAGCACACA
1 CAGCTAGTTCCTTTCTGTTTATCCTCCAGCACACA
26138158 TACTTATTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.20, C:0.33, G:0.11, T:0.36
Consensus pattern (35 bp):
CAGCTAGTTCCTTTCTGTTTATCCTCCAGCACACA
Found at i:26138833 original size:29 final size:29
Alignment explanation
Indices: 26138800--26138884 Score: 73
Period size: 29 Copynumber: 3.2 Consensus size: 29
26138790 CTGTGATTGC
26138800 CTTCACGTTGAAGGTGCTTGTGTTATTCA
1 CTTCACGTTGAAGGTGCTTGTGTTATTCA
*
26138829 CTTCAC--T--A--T-CACTGTG--ATTGC-
1 CTTCACGTTGAAGGTGC-TTGTGTTATT-CA
26138850 CTTCACGTTGAAGGTGCTTGTGTTATTCA
1 CTTCACGTTGAAGGTGCTTGTGTTATTCA
26138879 CTTCAC
1 CTTCAC
26138885 TATCCTTTCT
Statistics
Matches: 42, Mismatches: 2, Indels: 24
0.62 0.03 0.35
Matches are distributed among these distances:
21 9 0.21
22 2 0.05
23 6 0.14
25 2 0.05
27 6 0.14
28 2 0.05
29 15 0.36
ACGTcount: A:0.18, C:0.22, G:0.20, T:0.40
Consensus pattern (29 bp):
CTTCACGTTGAAGGTGCTTGTGTTATTCA
Found at i:26138848 original size:50 final size:50
Alignment explanation
Indices: 26138789--26138888 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
26138779 AAGTTGACCA
26138789 ACTGTGATTGCCTTCACGTTGAAGGTGCTTGTGTTATTCACTTCACTATC
1 ACTGTGATTGCCTTCACGTTGAAGGTGCTTGTGTTATTCACTTCACTATC
26138839 ACTGTGATTGCCTTCACGTTGAAGGTGCTTGTGTTATTCACTTCACTATC
1 ACTGTGATTGCCTTCACGTTGAAGGTGCTTGTGTTATTCACTTCACTATC
26138889 CTTTCTCATT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.18, C:0.22, G:0.20, T:0.40
Consensus pattern (50 bp):
ACTGTGATTGCCTTCACGTTGAAGGTGCTTGTGTTATTCACTTCACTATC
Found at i:26146803 original size:46 final size:46
Alignment explanation
Indices: 26146766--26147024 Score: 358
Period size: 46 Copynumber: 5.6 Consensus size: 46
26146756 ATGAAATGTG
* * * **
26146766 TAAGACCATGGTTGAAAGATACCATGACAACCTGATATGAAATGTG
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAAAGAA
*
26146812 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAAAGAA
* *
26146858 TAAGATCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAAAGAA
* *
26146904 TAAGATCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAAAGAA
* * *
26146950 TAAGATCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAG
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAAA-GAA
* * *
26146996 TAAGACCATAGTTGAAAGACACTATGGCA
1 TAAGACCATGGTTGAAAGATACCATGGCA
26147025 TCATGTCAAA
Statistics
Matches: 199, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 5 0.03
46 194 0.97
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.20
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAAAGAA
Found at i:26149270 original size:44 final size:44
Alignment explanation
Indices: 26149210--26149610 Score: 309
Period size: 44 Copynumber: 9.1 Consensus size: 44
26149200 AATCTAAGAT
26149210 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCA
* * * * * * *
26149254 GATTTGGCGTCCCTGTATTGTTAGGGAGCAGATCGAAGACATGGTA
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATC-AA-AGATAGCA
* * * * *
26149300 GATTTGGCTTTCACGTGT-TTACG-CTGA-AGCAAATCTAAGAT----
1 GATTTGGC-ATCTC-TGTATT--GTCAGAGAGCAGATCAAAGATAGCA
* *
26149341 GATTTGGCATCTCTGTATTATCAGAGAGCAGATCAAAGATAGTA
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCA
* * * * * *
26149385 GATTTGGCGTCTCTATATTTGTTAGGGAGCAGATCGAGGATAGCA
1 GATTTGGCATCTCTGTA-TTGTCAGAGAGCAGATCAAAGATAGCA
* * * *
26149430 GATTTGGCATCTCTGTATGGTCAGAGAGCAAATCAGAGATAGTA
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCA
* * * *
26149474 GATTTGACATCTTTGTATTCGAC-GAGGAGCA-AGTCCAAGA-AGCA
1 GATTTGGCATCTCTGTATT-GTCAGA-GAGCAGA-TCAAAGATAGCA
* * * *
26149518 GATTTGGCATCCCTGTATTGTCAGGGAGCAGATCGAAGACAGCA
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCA
* * * **
26149562 GGTTTGGCGTCTCTGTATTGTCAGAAAGCAGATTGAAGATAGCA
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCA
26149606 GATTT
1 GATTT
26149611 AGTGTCTTTG
Statistics
Matches: 277, Mismatches: 60, Indels: 40
0.73 0.16 0.11
Matches are distributed among these distances:
39 6 0.02
40 17 0.06
41 8 0.03
43 13 0.05
44 149 0.54
45 53 0.19
46 14 0.05
47 12 0.04
48 4 0.01
49 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (44 bp):
GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCA
Found at i:26149357 original size:131 final size:132
Alignment explanation
Indices: 26149147--26149434 Score: 474
Period size: 131 Copynumber: 2.2 Consensus size: 132
26149137 ATGTTTACAA
*
26149147 GGAGCAGATTGAAGACATAGCAGATTTAGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGA
1 GGAGCAGATCGAAGACATAGCAGATTTAGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGA
* *
26149212 TTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCGTCCCTGTA-TTGTT
66 TTTGGCATCTCTGTATTATCAGAGAGCAGATCAAAGATAGCAGATTTGGCGTCCCTATATTTGTT
26149276 AG
131 AG
* * *
26149278 GGAGCAGATCGAAGACATGGTAGATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGA
1 GGAGCAGATCGAAGACATAGCAGATTTAGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGA
* *
26149343 TTTGGCATCTCTGTATTATCAGAGAGCAGATCAAAGATAGTAGATTTGGCGTCTCTATATTTGTT
66 TTTGGCATCTCTGTATTATCAGAGAGCAGATCAAAGATAGCAGATTTGGCGTCCCTATATTTGTT
26149408 AG
131 AG
*
26149410 GGAGCAGATCG-AG-GATAGCAGATTT
1 GGAGCAGATCGAAGACATAGCAGATTT
26149435 GGCATCTCTG
Statistics
Matches: 145, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
130 9 0.06
131 118 0.81
132 18 0.12
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (132 bp):
GGAGCAGATCGAAGACATAGCAGATTTAGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGA
TTTGGCATCTCTGTATTATCAGAGAGCAGATCAAAGATAGCAGATTTGGCGTCCCTATATTTGTT
AG
Found at i:26149445 original size:89 final size:88
Alignment explanation
Indices: 26149210--26149610 Score: 295
Period size: 89 Copynumber: 4.6 Consensus size: 88
26149200 AATCTAAGAT
* * * * *
26149210 GATTTGGCATCTCTGTA-TTGTCAGAGAGCAGATCAAAGATAGCAGATTTGGCGTCCCTGTATTG
1 GATTTGGCGTCTCTGTATTTGT-AGGGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTG
* * * *
26149274 TTAGGGAGCAGATCGAAGACATGGTA
65 TCAGAGAGCAGATC-AA-AGATAGTA
* * * * * *
26149300 GATTTGGC-TTTCACGT-GTT-TACGCTGAAGCAAATCTAAGAT----GATTTGGCATCTCTGTA
1 GATTTGGCGTCTC-TGTATTTGTA-G--GGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTA
*
26149358 TTATCAGAGAGCAGATCAAAGATAGTA
62 TTGTCAGAGAGCAGATCAAAGATAGTA
* * *
26149385 GATTTGGCGTCTCTATATTTGTTAGGGAGCAGATCGAGGATAGCAGATTTGGCATCTCTGTATGG
1 GATTTGGCGTCTCTGTATTTG-TAGGGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTG
* *
26149450 TCAGAGAGCAAATCAGAGATAGTA
65 TCAGAGAGCAGATCAAAGATAGTA
* * * * * *
26149474 GATTTGACATCTTTGTATTCG-ACGAGGAGCA-AGTCCAAGA-AGCAGATTTGGCATCCCTGTAT
1 GATTTGGCGTCTCTGTATTTGTA-G-GGAGCAGA-TCGAAGATAGCAGATTTGGCATCTCTGTAT
* * * *
26149536 TGTCAGGGAGCAGATCGAAGACAGCA
63 TGTCAGAGAGCAGATCAAAGATAGTA
* ** *
26149562 GGTTTGGCGTCTCTGTA-TTGTCAGAAAGCAGATTGAAGATAGCAGATTT
1 GATTTGGCGTCTCTGTATTTGT-AGGGAGCAGATCGAAGATAGCAGATTT
26149611 AGTGTCTTTG
Statistics
Matches: 242, Mismatches: 49, Indels: 42
0.73 0.15 0.13
Matches are distributed among these distances:
85 27 0.11
86 7 0.03
87 42 0.17
88 69 0.29
89 73 0.30
90 12 0.05
91 12 0.05
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (88 bp):
GATTTGGCGTCTCTGTATTTGTAGGGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTGT
CAGAGAGCAGATCAAAGATAGTA
Found at i:26151192 original size:30 final size:29
Alignment explanation
Indices: 26151152--26151215 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
26151142 GTTATTTTTA
* *
26151152 TTATTCTATATTTTACT-TATAAATTATATT
1 TTATTATATATTTCA-TATATAAATTAT-TT
*
26151182 TTATTATATATTTCATATATATATTATTT
1 TTATTATATATTTCATATATAAATTATTT
26151211 TTATT
1 TTATT
26151216 TTAAATTATG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 8 0.27
30 22 0.73
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (29 bp):
TTATTATATATTTCATATATAAATTATTT
Found at i:26151234 original size:20 final size:20
Alignment explanation
Indices: 26151206--26151296 Score: 57
Period size: 20 Copynumber: 4.5 Consensus size: 20
26151196 ATATATATAT
*
26151206 TATTTTTATTTTAAATTATG
1 TATTATTATTTTAAATTATG
*
26151226 TATTATTATTCATT-AATTGTG
1 TATTATTATT--TTAAATTATG
*
26151247 TAAATTTTATTTTTTTAAA--A--
1 T--A--TTATTATTTTAAATTATG
*
26151267 TATTTTTATTTTAAATTATG
1 TATTATTATTTTAAATTATG
26151287 TATTATTATT
1 TATTATTATT
26151297 CATTAATTGT
Statistics
Matches: 53, Mismatches: 7, Indels: 22
0.65 0.09 0.27
Matches are distributed among these distances:
16 11 0.21
18 2 0.04
20 19 0.36
21 7 0.13
22 2 0.04
23 3 0.06
24 2 0.04
25 7 0.13
ACGTcount: A:0.32, C:0.01, G:0.04, T:0.63
Consensus pattern (20 bp):
TATTATTATTTTAAATTATG
Found at i:26151251 original size:30 final size:30
Alignment explanation
Indices: 26151217--26151313 Score: 85
Period size: 30 Copynumber: 3.2 Consensus size: 30
26151207 ATTTTTATTT
26151217 TAAATTATGTATTATTATTCATTAATTGTG
1 TAAATTATGTATTATTATTCATTAATTGTG
* * * *
26151247 TAAATTTTATTTTTTTAAAATATT--TTTATT-T-
1 TAAA--TTA-TGTATT--ATTATTCATTAATTGTG
26151278 TAAATTATGTATTATTATTCATTAATTGTG
1 TAAATTATGTATTATTATTCATTAATTGTG
26151308 TAAATT
1 TAAATT
26151314 TTATTTTTTA
Statistics
Matches: 50, Mismatches: 8, Indels: 18
0.66 0.11 0.24
Matches are distributed among these distances:
26 5 0.10
28 9 0.18
29 4 0.08
30 10 0.20
31 4 0.08
32 4 0.08
33 9 0.18
35 5 0.10
ACGTcount: A:0.34, C:0.02, G:0.06, T:0.58
Consensus pattern (30 bp):
TAAATTATGTATTATTATTCATTAATTGTG
Found at i:26151277 original size:61 final size:61
Alignment explanation
Indices: 26151206--26151327 Score: 235
Period size: 61 Copynumber: 2.0 Consensus size: 61
26151196 ATATATATAT
*
26151206 TATTTTTATTTTAAATTATGTATTATTATTCATTAATTGTGTAAATTTTATTTTTTTAAAA
1 TATTTTTATTTTAAATTATGTATTATTATTCATTAATTGTGTAAATTTTATTTTTTAAAAA
26151267 TATTTTTATTTTAAATTATGTATTATTATTCATTAATTGTGTAAATTTTATTTTTTAAAAA
1 TATTTTTATTTTAAATTATGTATTATTATTCATTAATTGTGTAAATTTTATTTTTTAAAAA
26151328 AGATTATTAT
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.34, C:0.02, G:0.05, T:0.60
Consensus pattern (61 bp):
TATTTTTATTTTAAATTATGTATTATTATTCATTAATTGTGTAAATTTTATTTTTTAAAAA
Found at i:26151292 original size:17 final size:16
Alignment explanation
Indices: 26151204--26151293 Score: 55
Period size: 16 Copynumber: 5.8 Consensus size: 16
26151194 TCATATATAT
*
26151204 ATTATTTTTATTTTAA
1 ATTATTATTATTTTAA
*
26151220 ATTATGTATTATTATT-C
1 ATTAT-TATTATT-TTAA
* *
26151237 ATTA--ATT-GTGTAA
1 ATTATTATTATTTTAA
*
26151250 ATT-TTATTTTTTTAA
1 ATTATTATTATTTTAA
* *
26151265 AATATTTTTATTTTAA
1 ATTATTATTATTTTAA
26151281 ATTATGTATTATT
1 ATTAT-TATTATT
26151294 ATTCATTAAT
Statistics
Matches: 54, Mismatches: 12, Indels: 15
0.67 0.15 0.19
Matches are distributed among these distances:
12 1 0.02
13 4 0.07
14 6 0.11
15 6 0.11
16 19 0.35
17 16 0.30
18 2 0.04
ACGTcount: A:0.32, C:0.01, G:0.04, T:0.62
Consensus pattern (16 bp):
ATTATTATTATTTTAA
Found at i:26154385 original size:26 final size:26
Alignment explanation
Indices: 26154348--26154403 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
26154338 TGATACAAAT
26154348 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
26154374 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
26154400 TGAT
1 TGAT
26154404 GGGAATTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.32, C:0.07, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:26160665 original size:26 final size:26
Alignment explanation
Indices: 26160636--26160743 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
26160626 TGATACAAAT
*
26160636 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
26160662 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26160688 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26160714 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26160740 TGAT
1 TGAT
26160744 GGGAATTTCA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:26172034 original size:51 final size:49
Alignment explanation
Indices: 26171958--26172197 Score: 348
Period size: 51 Copynumber: 4.9 Consensus size: 49
26171948 AGTGTGCTCT
26171958 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC--GC
26172009 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGC-A--GC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCGC
*
26172055 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-G-C
*
26172106 ATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA-CG-
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCGC
*** *
26172153 -TGATATGAAATGAACAAGACCAAGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
26172198 ATGACAGAAA
Statistics
Matches: 177, Mismatches: 6, Indels: 16
0.89 0.03 0.08
Matches are distributed among these distances:
46 85 0.48
47 1 0.01
49 1 0.01
50 3 0.02
51 87 0.49
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (49 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCGC
Found at i:26172073 original size:46 final size:46
Alignment explanation
Indices: 26171958--26172241 Score: 354
Period size: 46 Copynumber: 6.0 Consensus size: 46
26171948 AGTGTGCTCT
26171958 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGC-A---A-C
*
26172009 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
26172055 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
26172101 CTGATATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 C-----TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** *
26172152 GTGATATGAAATGAACAAGACCAAGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
26172198 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
26172242 TCATGTCAAA
Statistics
Matches: 212, Mismatches: 15, Indels: 17
0.87 0.06 0.07
Matches are distributed among these distances:
45 1 0.00
46 122 0.58
50 1 0.00
51 88 0.42
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:26172124 original size:97 final size:97
Alignment explanation
Indices: 26171958--26172197 Score: 392
Period size: 97 Copynumber: 2.5 Consensus size: 97
26171948 AGTGTGCTCT
*
26171958 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTAGCCTGATATGAAATGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTAGCATGATATGAAATGT
*
26172023 GTAAGACCATGGTTGAAAGATACCATGGCAGC
66 GTAAGACCATGGTTGAAAGATACCATGGCAAC
*
26172055 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCT-GATATGATATGAAATG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTAG-CATGATATGAAATG
26172119 TGTAAGACCATGGTTGAAAGATACCATGGCAAC
65 TGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** *
26172152 GTGATATGAAATGAACAAGACCAAGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
26172198 ATGACAGAAA
Statistics
Matches: 134, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
96 1 0.01
97 133 0.99
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (97 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTAGCATGATATGAAATGT
GTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:26175367 original size:35 final size:35
Alignment explanation
Indices: 26175321--26175391 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
26175311 AAAAATCTAG
* *
26175321 GATGGATTGGATTCACCGAGGAGACAGAACACCAA
1 GATGGATTGGATTCACCAAGGAGACAAAACACCAA
26175356 GATGGATTGGATTCACCAAGGAGACAAAACACCAA
1 GATGGATTGGATTCACCAAGGAGACAAAACACCAA
26175391 G
1 G
26175392 TTCTTTCATA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.39, C:0.20, G:0.27, T:0.14
Consensus pattern (35 bp):
GATGGATTGGATTCACCAAGGAGACAAAACACCAA
Found at i:26177945 original size:5 final size:5
Alignment explanation
Indices: 26177937--26177962 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
26177927 AAATTAAAAC
26177937 TTTAT TTTAT TTTAT TTTAT TTTAT T
1 TTTAT TTTAT TTTAT TTTAT TTTAT T
26177963 ATGCAAATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:26179580 original size:20 final size:21
Alignment explanation
Indices: 26179557--26179598 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
26179547 GTTATATACG
*
26179557 TATATAGTATGTGTATT-TTA
1 TATATAGTATGTATATTATTA
*
26179577 TATATATTATGTATATTATTA
1 TATATAGTATGTATATTATTA
26179598 T
1 T
26179599 TTTTACTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (21 bp):
TATATAGTATGTATATTATTA
Found at i:26179677 original size:21 final size:21
Alignment explanation
Indices: 26179648--26179687 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
26179638 ATCCGTGTAT
*
26179648 TTTATTATATATGTATATATC
1 TTTAATATATATGTATATATC
*
26179669 TTTAATATATATTTATATA
1 TTTAATATATATGTATATA
26179688 AGTATATCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (21 bp):
TTTAATATATATGTATATATC
Found at i:26179787 original size:24 final size:25
Alignment explanation
Indices: 26179760--26179810 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 25
26179750 ATGTGTGTAC
26179760 ATATTATGTAAATGTTTTA-ATATT
1 ATATTATGTAAATGTTTTATATATT
**
26179784 ATATTATGTGTATGTTTTATATATT
1 ATATTATGTAAATGTTTTATATATT
26179809 AT
1 AT
26179811 GAACATGTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 17 0.71
25 7 0.29
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (25 bp):
ATATTATGTAAATGTTTTATATATT
Found at i:26192109 original size:75 final size:75
Alignment explanation
Indices: 26192013--26192747 Score: 477
Period size: 87 Copynumber: 9.2 Consensus size: 75
26192003 TATGTGGATG
* * * *
26192013 TTTC-ATTTCTGTTT-TCAAAAAAATCAACTCATAATTGCGAGAGGTGAGTTGAGCCTTAGGGCG
1 TTTCAATTACTGTTTGTTAAAAAAATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCCTCAGGGCA
26192076 CGCTGAGGTAT
65 CGCTGAGGTAT
* * *
26192087 TTTCAATTACTGTTTGTTAAAAAAATTAACTCATATTGCGGGAGGTGAGTTGAGCCTCGGGGCAC
1 TTTCAATTACTGTTTGTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
26192152 GCTGAGGTAT
66 GCTGAGGTAT
* *
26192162 TTTCAATTACTGTTTGTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACAC
1 TTTCAATTACTGTTTGTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
*
26192227 GCTGAGATAT
66 GCTGAGGTAT
* * * * *
26192237 TTTCAATTTCTGTTT-TT-CAAAATTCAACTCATATTGCGAAAGGTAAGTTGAGCCTCAGGGCAC
1 TTTCAATTACTGTTTGTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
26192300 GCTGAGGTAT
66 GCTGAGGTAT
* ** *
26192310 TGTCAATTTTTGTGTT-TTAATTTATTTTTCAAAAATCAACTCATATCGCGAGAGGTGAGTTGAG
1 TTTCAATTACTGT-TTGTT-A---A------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* * **
26192374 CCTCAAGTCACATTGAGGTAT
55 CCTCAGGGCACGCTGAGGTAT
* * ** *
26192395 TTTTAATT--T-ATCATCAAAAAAATCAACTCATATTGCGAG-GAGTGAGTTGAGCCTTGGCTCA
1 TTTCAATTACTGTTTGTTAAAAAAATCAACTCATATTGCGAGAG-GTGAGTTGAG-C----CTCA
*
26192456 GGGCACGTTGAGGTAT
60 GGGCACGCTGAGGTAT
* *
26192472 TTTCGATTTCTGTTT-TTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
1 TTTCAATTACTGTTTGTT--A---A--------AAAAATCAACTCATATTGCGAGAGGTGAGTTG
* *
26192536 AGCCTCGGGGCACGCTGAGTTAT
53 AGCCTCAGGGCACGCTGAGGTAT
* *
26192559 TCTCAATTAATGTTT-TTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
1 TTTCAATTACTGTTTGTT--A---A--------AAAAATCAACTCATATTGCGAGAGGTGAGTTG
* *
26192623 AGCCTCGGGGCACGCTGAGTTAT
53 AGCCTCAGGGCACGCTGAGGTAT
* *
26192646 TCTCAATTAATGTTT-TTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
1 TTTCAATTACTGTTTGTT--A---A--------AAAAATCAACTCATATTGCGAGAGGTGAGTTG
* * *
26192710 AGCCTCGGGGCGCGCTGAGTTAT
53 AGCCTCAGGGCACGCTGAGGTAT
* *
26192733 TCTCAATTAATGTTT
1 TTTCAATTACTGTTT
26192748 TTCAATTTAT
Statistics
Matches: 568, Mismatches: 55, Indels: 63
0.83 0.08 0.09
Matches are distributed among these distances:
71 1 0.00
72 31 0.05
73 61 0.11
74 10 0.02
75 129 0.23
76 16 0.03
77 23 0.04
78 1 0.00
79 2 0.00
80 1 0.00
81 3 0.01
82 1 0.00
83 1 0.00
84 1 0.00
85 53 0.09
87 200 0.35
91 1 0.00
92 32 0.06
93 1 0.00
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (75 bp):
TTTCAATTACTGTTTGTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
GCTGAGGTAT
Found at i:26192301 original size:73 final size:74
Alignment explanation
Indices: 26192013--26192488 Score: 476
Period size: 75 Copynumber: 6.2 Consensus size: 74
26192003 TATGTGGATG
* * *
26192013 TTTC-ATTTCTGTTTTCAAAAAAATCAACTCATAATTGCGAGAGGTGAGTTGAGCCTTAGGGCGC
1 TTTCAATTTCTGTTTTTAAAAAAATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
26192077 GCTGAGGTAT
65 GCTGAGGTAT
* * * *
26192087 TTTCAATTACTGTTTGTTAAAAAAATTAACTCATATTGCGGGAGGTGAGTTGAGCCTCGGGGCAC
1 TTTCAATTTCTGTTT-TTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
26192152 GCTGAGGTAT
65 GCTGAGGTAT
* * *
26192162 TTTCAATTACTGTTTGTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACAC
1 TTTCAATTTCTGTTT-TTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
*
26192227 GCTGAGATAT
65 GCTGAGGTAT
* * * *
26192237 TTTCAATTTCTGTTTTT-CAAAATTCAACTCATATTGCGAAAGGTAAGTTGAGCCTCAGGGCACG
1 TTTCAATTTCTGTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACG
26192301 CTGAGGTAT
66 CTGAGGTAT
* * *
26192310 TGTCAATTTTTGTGTTTTAATTTATTTTTCAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGC
1 TTTCAATTTCTGT-TTTT-A---A------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* * **
26192375 CTCAAGTCACATTGAGGTAT
55 CTCAGGGCACGCTGAGGTAT
* * ** *
26192395 TTTTAA-TT-TATCATCAAAAAAATCAACTCATATTGCGAG-GAGTGAGTTGAGCCTTGGCTCAG
1 TTTCAATTTCTGTTTTTAAAAAAATCAACTCATATTGCGAGAG-GTGAGTTGAG-C----CTCAG
*
26192457 GGCACGTTGAGGTAT
60 GGCACGCTGAGGTAT
*
26192472 TTTCGATTTCTGTTTTT
1 TTTCAATTTCTGTTTTT
26192489 CAATTTATGT
Statistics
Matches: 332, Mismatches: 48, Indels: 39
0.79 0.11 0.09
Matches are distributed among these distances:
71 1 0.00
72 31 0.09
73 61 0.18
74 10 0.03
75 129 0.39
76 16 0.05
77 21 0.06
78 3 0.01
79 3 0.01
81 1 0.00
82 1 0.00
83 2 0.01
84 2 0.01
85 51 0.15
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.35
Consensus pattern (74 bp):
TTTCAATTTCTGTTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACG
CTGAGGTAT
Found at i:26192494 original size:14 final size:14
Alignment explanation
Indices: 26192471--26192505 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
26192461 CGTTGAGGTA
* *
26192471 TTTTCGATTTCTGT
1 TTTTCAATTTATGT
26192485 TTTTCAATTTATGT
1 TTTTCAATTTATGT
26192499 TTTTCAA
1 TTTTCAA
26192506 AAATCAACTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.17, C:0.11, G:0.09, T:0.63
Consensus pattern (14 bp):
TTTTCAATTTATGT
Found at i:26192597 original size:87 final size:87
Alignment explanation
Indices: 26192412--26192890 Score: 628
Period size: 87 Copynumber: 5.4 Consensus size: 87
26192402 TTATCATCAA
* * * *
26192412 AAAAATCAACTCATATTGCGAG-GAGTGAGTTGAGCCTTGGCTCAGGGCACGTTGAGGTATTTTC
1 AAAAATCAACTCATATTGCGAGAG-GTGAGTTGAG-C----CTCGGGGCACGCTGAGTTATTCTC
* ** *
26192476 GATTTCTGTTTTTCAATTTATGTTTTTC
60 AATTAATGTTTTTCAATTTATGCTTTTC
26192504 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGTTATTCTCAATTAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGTTATTCTCAATTAA
26192569 TGTTTTTCAATTTATGCTTTTC
66 TGTTTTTCAATTTATGCTTTTC
26192591 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGTTATTCTCAATTAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGTTATTCTCAATTAA
26192656 TGTTTTTCAATTTATGCTTTTC
66 TGTTTTTCAATTTATGCTTTTC
*
26192678 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCGCGCTGAGTTATTCTCAATTAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGTTATTCTCAATTAA
*
26192743 TGTTTTTCAATTTATTCTTTTC
66 TGTTTTTCAATTTATGCTTTTC
* * * *
26192765 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATG-TCGAGGTATTTTCAA-
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCAC--GCT-GAGTTATTCTCAAT
* * *
26192828 -AATCTATTTTTCAAATTAAG--TTTC
63 TAA--TGTTTTTCAATTTATGCTTTTC
* *
26192852 AAAAAAACCAACCCATATTGCGAGAGGTGAGTTGAGCCT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
26192891 TAGCTCACGT
Statistics
Matches: 357, Mismatches: 22, Indels: 19
0.90 0.06 0.05
Matches are distributed among these distances:
87 264 0.74
88 1 0.00
89 58 0.16
91 1 0.00
92 32 0.09
93 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.35
Consensus pattern (87 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGTTATTCTCAATTAA
TGTTTTTCAATTTATGCTTTTC
Found at i:26206417 original size:13 final size:13
Alignment explanation
Indices: 26206399--26206423 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26206389 AAATCTGTTT
26206399 TGAGTGCTGCTCA
1 TGAGTGCTGCTCA
26206412 TGAGTGCTGCTC
1 TGAGTGCTGCTC
26206424 TTGTTAAGGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.24, G:0.32, T:0.32
Consensus pattern (13 bp):
TGAGTGCTGCTCA
Found at i:26206786 original size:35 final size:35
Alignment explanation
Indices: 26206744--26206812 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 35
26206734 ATAAGATTAT
*
26206744 TAATAATTATG-TTAAATTAT-ATTTAATATATTTAA
1 TAATAATTATGTTTAAA-TATGATTAAAT-TATTTAA
26206779 TAATAATTATGTTTAAATATGATTAAATTATTTA
1 TAATAATTATGTTTAAATATGATTAAATTATTTA
26206813 TTATTGATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
35 20 0.65
36 11 0.35
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (35 bp):
TAATAATTATGTTTAAATATGATTAAATTATTTAA
Found at i:26206922 original size:18 final size:17
Alignment explanation
Indices: 26206894--26206928 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26206884 ATTATTAAGA
*
26206894 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
26206911 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
26206929 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:26207183 original size:16 final size:16
Alignment explanation
Indices: 26207162--26207200 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
26207152 TTGATTTGCT
*
26207162 ATTACACAGCTTTTCC
1 ATTACACAGCTATTCC
**
26207178 ATTACACCTCTATTCC
1 ATTACACAGCTATTCC
26207194 ATTACAC
1 ATTACAC
26207201 CTCTAATCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.28, C:0.33, G:0.03, T:0.36
Consensus pattern (16 bp):
ATTACACAGCTATTCC
Found at i:26207201 original size:16 final size:16
Alignment explanation
Indices: 26207175--26207231 Score: 87
Period size: 16 Copynumber: 3.6 Consensus size: 16
26207165 ACACAGCTTT
* *
26207175 TCCATTACACCTCTAT
1 TCCAATACACCTCTAA
*
26207191 TCCATTACACCTCTAA
1 TCCAATACACCTCTAA
26207207 TCCAATACACCTCTAA
1 TCCAATACACCTCTAA
26207223 TCCAATACA
1 TCCAATACA
26207232 GCGAACCAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.33, C:0.37, G:0.00, T:0.30
Consensus pattern (16 bp):
TCCAATACACCTCTAA
Found at i:26208107 original size:5 final size:5
Alignment explanation
Indices: 26208099--26208123 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
26208089 TGAGTTTTTA
26208099 TAATT TAATT TAATT TAATT TAATT
1 TAATT TAATT TAATT TAATT TAATT
26208124 CTATTCTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TAATT
Found at i:26209952 original size:21 final size:21
Alignment explanation
Indices: 26209927--26209967 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 21
26209917 AGATGATTGC
26209927 AAAAAGAAGT-TATTTAAAAGTT
1 AAAAA-AAGTGTA-TTAAAAGTT
26209949 AAAAAAAGTGTATTAAAAG
1 AAAAAAAGTGTATTAAAAG
26209968 AGAAGGAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.59, C:0.00, G:0.15, T:0.27
Consensus pattern (21 bp):
AAAAAAAGTGTATTAAAAGTT
Found at i:26210046 original size:19 final size:19
Alignment explanation
Indices: 26210016--26210063 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
26210006 AAAGGTTTAA
* *
26210016 TTTAATTAAATTT-ATTTT
1 TTTAATTTAATTTAAATTT
26210034 TTGTAATTTAATTTAAATTT
1 TT-TAATTTAATTTAAATTT
26210054 TTTAATTTAA
1 TTTAATTTAA
26210064 AAGTGTCACG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 2 0.08
19 18 0.69
20 6 0.23
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.62
Consensus pattern (19 bp):
TTTAATTTAATTTAAATTT
Found at i:26213499 original size:4 final size:4
Alignment explanation
Indices: 26213492--26213536 Score: 54
Period size: 4 Copynumber: 11.2 Consensus size: 4
26213482 AACAAAAGCA
* * * *
26213492 TATG TATG CATG CATG CATG CATG TATG TATG TATG TATG TATG T
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG T
26213537 TCTATGCATG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 39 1.00
ACGTcount: A:0.24, C:0.09, G:0.24, T:0.42
Consensus pattern (4 bp):
TATG
Found at i:26213536 original size:12 final size:12
Alignment explanation
Indices: 26213492--26213535 Score: 61
Period size: 12 Copynumber: 3.7 Consensus size: 12
26213482 AACAAAAGCA
26213492 TATGTATGCATG
1 TATGTATGCATG
* *
26213504 CATGCATGCATG
1 TATGTATGCATG
*
26213516 TATGTATGTATG
1 TATGTATGCATG
26213528 TATGTATG
1 TATGTATG
26213536 TTCTATGCAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.25, C:0.09, G:0.25, T:0.41
Consensus pattern (12 bp):
TATGTATGCATG
Found at i:26216616 original size:23 final size:21
Alignment explanation
Indices: 26216590--26216635 Score: 56
Period size: 23 Copynumber: 2.1 Consensus size: 21
26216580 TAAAATATCA
26216590 TATTATTAAATTATTAGTAATTT
1 TATTATTAAATTATT--TAATTT
* *
26216613 TATTTTTTAATTATTTAATTT
1 TATTATTAAATTATTTAATTT
26216634 TA
1 TA
26216636 AAAAGTTACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 8 0.38
23 13 0.62
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (21 bp):
TATTATTAAATTATTTAATTT
Found at i:26220772 original size:42 final size:42
Alignment explanation
Indices: 26220712--26220797 Score: 138
Period size: 42 Copynumber: 2.0 Consensus size: 42
26220702 TCTCTTTCCC
*
26220712 TCCCTAAACACACCCATGGACTGCTCCTTTTCC-TACTTTTGA
1 TCCCTAAACACACACATGGACTGCTCC-TTTCCTTACTTTTGA
*
26220754 TCCCTAAACAGACACATGGACTGCTCCTTTCCTTACTTTTGA
1 TCCCTAAACACACACATGGACTGCTCCTTTCCTTACTTTTGA
26220796 TC
1 TC
26220798 TTTAGGTAGT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
41 5 0.12
42 36 0.88
ACGTcount: A:0.22, C:0.34, G:0.10, T:0.34
Consensus pattern (42 bp):
TCCCTAAACACACACATGGACTGCTCCTTTCCTTACTTTTGA
Found at i:26222126 original size:30 final size:31
Alignment explanation
Indices: 26222069--26222126 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 31
26222059 ATGATGGCCT
**
26222069 TATTTCAACATTTTATGTATTTCATGTTGTC
1 TATTTCAACATTTTATGTAAGTCATGTTGTC
26222100 TATTT-AACATTTTATGTGAAGT-ATGTT
1 TATTTCAACATTTTATGT-AAGTCATGTT
26222127 CGATTTGTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 17 0.71
31 7 0.29
ACGTcount: A:0.26, C:0.09, G:0.12, T:0.53
Consensus pattern (31 bp):
TATTTCAACATTTTATGTAAGTCATGTTGTC
Found at i:26222350 original size:14 final size:16
Alignment explanation
Indices: 26222325--26222357 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
26222315 CATTGATTAC
26222325 TGAAACAGAT-AAAAT
1 TGAAACAGATAAAAAT
26222340 TGAAA-AGATAAAAAT
1 TGAAACAGATAAAAAT
26222355 TGA
1 TGA
26222358 CTGAAACAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.61, C:0.03, G:0.15, T:0.21
Consensus pattern (16 bp):
TGAAACAGATAAAAAT
Found at i:26249928 original size:25 final size:25
Alignment explanation
Indices: 26249900--26249947 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
26249890 GGTTGGGGTA
26249900 AAGGAAGAAGAAG-AAATAGAAGATG
1 AAGGAAGAA-AAGAAAATAGAAGATG
*
26249925 AAGGGAGAAAAGAAAATAGAAGA
1 AAGGAAGAAAAGAAAATAGAAGA
26249948 AGGAGGAGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 3 0.14
25 18 0.86
ACGTcount: A:0.62, C:0.00, G:0.31, T:0.06
Consensus pattern (25 bp):
AAGGAAGAAAAGAAAATAGAAGATG
Found at i:26254717 original size:19 final size:19
Alignment explanation
Indices: 26254693--26254729 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
26254683 GAATTTGGCC
*
26254693 CAATTTGTCCGTTTTTGGT
1 CAATTTGTCCATTTTTGGT
26254712 CAATTTGTCCATTTTTGG
1 CAATTTGTCCATTTTTGG
26254730 CCCGTTTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.14, C:0.16, G:0.19, T:0.51
Consensus pattern (19 bp):
CAATTTGTCCATTTTTGGT
Found at i:26257254 original size:20 final size:20
Alignment explanation
Indices: 26257229--26257267 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
26257219 CTTGTGCAAG
26257229 TTTGCACTTCAGTGCCTCTA
1 TTTGCACTTCAGTGCCTCTA
26257249 TTTGCACTTCAGTGCCTCT
1 TTTGCACTTCAGTGCCTCT
26257268 TACTGCACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.13, C:0.31, G:0.15, T:0.41
Consensus pattern (20 bp):
TTTGCACTTCAGTGCCTCTA
Found at i:26257274 original size:20 final size:21
Alignment explanation
Indices: 26257231--26257287 Score: 73
Period size: 20 Copynumber: 2.8 Consensus size: 21
26257221 TGTGCAAGTT
*
26257231 TGCACTTCAGTGCCTC-TATT
1 TGCACTTCAGTGCCTCTTATC
26257251 TGCACTTCAGTGCCTCTTA-C
1 TGCACTTCAGTGCCTCTTATC
* *
26257271 TGCACTTTAATGCCTCT
1 TGCACTTCAGTGCCTCT
26257288 GTACAATACT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
20 31 0.94
21 2 0.06
ACGTcount: A:0.16, C:0.32, G:0.14, T:0.39
Consensus pattern (21 bp):
TGCACTTCAGTGCCTCTTATC
Found at i:26259180 original size:31 final size:30
Alignment explanation
Indices: 26259111--26259180 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 30
26259101 AATAATCCAT
* *
26259111 TAATATTAAATTAATAAAATATTATTAAAA
1 TAATATTAAATTAATAAAATACTACTAAAA
*
26259141 TAAGTATTAAATTAAATTTAAAT-CTACTAAAA
1 TAA-TATTAAATT-AA-TAAAATACTACTAAAA
26259173 TAATATTA
1 TAATATTA
26259181 TTTTTGGAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
30 3 0.09
31 14 0.41
32 12 0.35
33 5 0.15
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (30 bp):
TAATATTAAATTAATAAAATACTACTAAAA
Found at i:26261179 original size:71 final size:72
Alignment explanation
Indices: 26261059--26261192 Score: 225
Period size: 71 Copynumber: 1.9 Consensus size: 72
26261049 TAATAGAAAT
*
26261059 CATTTAATATATCTCAAAAACCAACCAAACATAAGGGTTTATTATAAATTTTAATGTCTATATGA
1 CATTTAATATATCTCAAAAACCAACCAAACATAAAGGTTTATTATAAATTTTAATGTCTATATGA
26261124 TAAAGAA
66 TAAAGAA
* * *
26261131 CATTTAATATATCTCCAAAACCAGCC-AACATAAAGGTTTATTATAAATTTTAATTTCTATAT
1 CATTTAATATATCTCAAAAACCAACCAAACATAAAGGTTTATTATAAATTTTAATGTCTATAT
26261193 AAAGAATATA
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
71 34 0.59
72 24 0.41
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.36
Consensus pattern (72 bp):
CATTTAATATATCTCAAAAACCAACCAAACATAAAGGTTTATTATAAATTTTAATGTCTATATGA
TAAAGAA
Found at i:26263600 original size:30 final size:30
Alignment explanation
Indices: 26263566--26263630 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 30
26263556 GTTTTTTTTT
* * *
26263566 ATAAGAAAACTGAATATTCTTAAATGAAAA
1 ATAAGAAAACTAAATATTCTCAAACGAAAA
* * *
26263596 ATAAGGAAGCTAAATTTTCTCAAACGAAAA
1 ATAAGAAAACTAAATATTCTCAAACGAAAA
26263626 ATAAG
1 ATAAG
26263631 GCGAATTTGA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.54, C:0.09, G:0.12, T:0.25
Consensus pattern (30 bp):
ATAAGAAAACTAAATATTCTCAAACGAAAA
Found at i:26266367 original size:30 final size:30
Alignment explanation
Indices: 26266323--26266379 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
26266313 ACGACCATGA
*
26266323 CACACGAGCGTGT-GGTCTACCCGTGTGCCT
1 CACACGAGCATGTGGGT-TACCCGTGTGCCT
*
26266353 CACACGGGCATGTGGGTTACCCGTGTG
1 CACACGAGCATGTGGGTTACCCGTGTG
26266380 AAAGTGCATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 21 0.88
31 3 0.12
ACGTcount: A:0.14, C:0.30, G:0.33, T:0.23
Consensus pattern (30 bp):
CACACGAGCATGTGGGTTACCCGTGTGCCT
Found at i:26269675 original size:4 final size:4
Alignment explanation
Indices: 26269661--26269692 Score: 55
Period size: 4 Copynumber: 7.8 Consensus size: 4
26269651 AACTAAGAAA
26269661 AAAT CAAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT -AAAT AAAT AAAT AAAT AAAT AAAT AAA
26269693 ATGAAAGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 23 0.85
5 4 0.15
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:26284606 original size:42 final size:42
Alignment explanation
Indices: 26284500--26284666 Score: 147
Period size: 43 Copynumber: 3.9 Consensus size: 42
26284490 TCATACAACA
* * * * * *
26284500 CCAACGTCCCAAATATGGTCTTACATGTAGTCAAATATCGATG
1 CCAATGTCCCAGACATGGTCTTACACGAAATCAAATAT-GATG
* * * *
26284543 CCACTATCCCAAACAGGGTCTTACACGAAATCAAATATGATG
1 CCAATGTCCCAGACATGGTCTTACACGAAATCAAATATGATG
* *
26284585 CCAATGTCCCAGACATAGTCTTACACGTAAATATCAAAT-CGATG
1 CCAATGTCCCAGACATGGTCTTACACG--AA-ATCAAATATGATG
* * * *
26284629 GCAATGTCCCAGACGTGGTCTTACATGAAATCACATAT
1 CCAATGTCCCAGACATGGTCTTACACGAAATCAAATAT
26284667 TAGAATCCTA
Statistics
Matches: 100, Mismatches: 20, Indels: 9
0.78 0.16 0.07
Matches are distributed among these distances:
41 6 0.06
42 28 0.28
43 30 0.30
44 29 0.29
45 7 0.07
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.25
Consensus pattern (42 bp):
CCAATGTCCCAGACATGGTCTTACACGAAATCAAATATGATG
Found at i:26284639 original size:44 final size:42
Alignment explanation
Indices: 26284530--26284661 Score: 131
Period size: 44 Copynumber: 3.1 Consensus size: 42
26284520 TTACATGTAG
* * * **
26284530 TCAAATATCGATGCCACTATCCCAAACAGGGTCTTACACGAAA
1 TCAAATA-CGATGCCAATGTCCCAGACATAGTCTTACACGAAA
*
26284573 TCAAATATGATGCCAATGTCCCAGACATAGTCTTACACGTAAATA
1 TCAAATACGATGCCAATGTCCCAGACATAGTCTTACACG--AA-A
* * * *
26284618 TCAAAT-CGATGGCAATGTCCCAGACGTGGTCTTACATGAAA
1 TCAAATACGATGCCAATGTCCCAGACATAGTCTTACACGAAA
26284659 TCA
1 TCA
26284662 CATATTAGAA
Statistics
Matches: 75, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
41 4 0.05
42 28 0.37
43 7 0.09
44 29 0.39
45 7 0.09
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (42 bp):
TCAAATACGATGCCAATGTCCCAGACATAGTCTTACACGAAA
Found at i:26288558 original size:18 final size:18
Alignment explanation
Indices: 26288535--26288570 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
26288525 ATTTTAATTC
*
26288535 ACTTTCATATAACATATT
1 ACTTTCATAAAACATATT
26288553 ACTTTCATAAAACATATT
1 ACTTTCATAAAACATATT
26288571 TATTTAACTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.42, C:0.17, G:0.00, T:0.42
Consensus pattern (18 bp):
ACTTTCATAAAACATATT
Found at i:26288736 original size:14 final size:14
Alignment explanation
Indices: 26288719--26288746 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
26288709 TATTTCACAT
26288719 AGAAAATTTTACAC
1 AGAAAATTTTACAC
26288733 AGAAAATTTTACAC
1 AGAAAATTTTACAC
26288747 TCTTTATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.14, G:0.07, T:0.29
Consensus pattern (14 bp):
AGAAAATTTTACAC
Found at i:26293328 original size:67 final size:67
Alignment explanation
Indices: 26293220--26293550 Score: 325
Period size: 67 Copynumber: 5.0 Consensus size: 67
26293210 ACCTTCTAGT
* * * *
26293220 GGACTTTCTATGTTGTCATAGCCGAGTTTTGGTCTTACACATCATACCCCATGTTTAATGTCCTG
1 GGACTCTCTATGTTGTCATAGCTGAGCTATGGTCTTACACATCATACCCCATGTTTAATGTCCTG
26293285 GC
66 GC
* * *
26293287 GGACTCTCTATGTT-TCCATAGCTGAGTTATGATTTTACACATCATACCCCATGTTTAATGT-CT
1 GGACTCTCTATGTTGT-CATAGCTGAGCTATGGTCTTACACATCATACCCCATGTTTAATGTCCT
**
26293350 CGAT
65 -GGC
* * * * * * *
26293354 TGACTGTTTATGTTGTCATAGCTAAGCTATGGCCTT--ACATCATACCACATGTTTAATGTCCTA
1 GGACTCTCTATGTTGTCATAGCTGAGCTATGGTCTTACACATCATACCCCATGTTTAATGTCCTG
26293417 GC
66 GC
* * * *
26293419 -GAGCTCTCTATGTTGTTATAG-TCGAGCTATGGTCTTACGCATCATACCCCATATTTAATGCCC
1 GGA-CTCTCTATGTTGTCATAGCT-GAGCTATGGTCTTACACATCATACCCCATGTTTAATGTCC
*
26293482 TAGC
64 TGGC
* * * * * *
26293486 GGGCTCTTTATGTTATTATAG-TCGAGCTATAGTCTTATACATCATACCCCATGTTTAATGTCCT
1 GGACTCTCTATGTTGTCATAGCT-GAGCTATGGTCTTACACATCATACCCCATGTTTAATGTCCT
26293550 G
65 G
26293551 ACGTGTCACA
Statistics
Matches: 218, Mismatches: 37, Indels: 18
0.80 0.14 0.07
Matches are distributed among these distances:
64 3 0.01
65 48 0.22
66 5 0.02
67 160 0.73
68 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (67 bp):
GGACTCTCTATGTTGTCATAGCTGAGCTATGGTCTTACACATCATACCCCATGTTTAATGTCCTG
GC
Found at i:26293496 original size:132 final size:134
Alignment explanation
Indices: 26293258--26293549 Score: 319
Period size: 132 Copynumber: 2.2 Consensus size: 134
26293248 TTGGTCTTAC
* * *
26293258 ACATCATACCCCATGTTTAATGTCCTGGCGGACTCTCTATGTTTCCATAGCTGAGTTATGATTTT
1 ACATCATACCCCATGTTTAATGTCCTAGCGGACTCTCTATGTTTCCATAGCTGAGCTATGATCTT
* * * ** * *
26293323 ACACATCATACCCCATGTTTAATGTCTCGATTGACTGTTTATGTTGTCATAG-CTAAGCTAT-GG
66 ACACATCATACCCCATATTTAATGCCTAGACGGACTCTTTATGTTATCATAGTC-AAGCTATAGG
26293386 CCT-T
130 CCTAT
* * *
26293390 ACATCATACCACATGTTTAATGTCCTAGC-GAGCTCTCTATGTTGT-TATAG-TCGAGCTATGGT
1 ACATCATACCCCATGTTTAATGTCCTAGCGGA-CTCTCTATGTT-TCCATAGCT-GAGCTATGAT
* * * *
26293452 CTTACGCATCATACCCCATATTTAATGCCCTAG-CGGGCTCTTTATGTTATTATAGTCGAGCTAT
63 CTTACACATCATACCCCATATTTAATG-CCTAGACGGACTCTTTATGTTATCATAGTCAAGCTAT
* *
26293516 AGTCTTAT
127 AGGCCTAT
26293524 ACATCATACCCCATGTTTAATGTCCT
1 ACATCATACCCCATGTTTAATGTCCT
26293550 GACGTGTCAC
Statistics
Matches: 133, Mismatches: 20, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
131 3 0.02
132 96 0.72
133 8 0.06
134 26 0.20
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.37
Consensus pattern (134 bp):
ACATCATACCCCATGTTTAATGTCCTAGCGGACTCTCTATGTTTCCATAGCTGAGCTATGATCTT
ACACATCATACCCCATATTTAATGCCTAGACGGACTCTTTATGTTATCATAGTCAAGCTATAGGC
CTAT
Found at i:26294856 original size:107 final size:108
Alignment explanation
Indices: 26294580--26294859 Score: 320
Period size: 105 Copynumber: 2.6 Consensus size: 108
26294570 TACTCACTCA
* * * * * * *
26294580 TGATATGTATCAAAGCGTGTGCTCCTTTGTGAGTTTGGTTGGGTAATTATATGCTCAATGAGACA
1 TGATATGTCTCAAAGTGCGTGCTCCTCTGTGAGTTCGGTTGGGTAATTATATACTCAACGAGACA
* *
26294645 AAGTTTGCTCCTCAGTGAGCTCGACTCTAGATATGAGCTAAAG
66 AAGTTTGCTCCTCAGTGAACTAGACTCTAGATATGAGCTAAAG
* ** * * * * *
26294688 TG--GTGTCTCAAAGTGCACGCTCCTCTATAAGTTCGATT-GGTAATTATATACTTAACAAGACA
1 TGATATGTCTCAAAGTGCGTGCTCCTCTGTGAGTTCGGTTGGGTAATTATATACTCAACGAGACA
* *
26294750 AAGTTTGCTCTTCAGTGAAACTAG-CTCT-GTATATGAGCTAATG
66 AAGTTTGCTCCTCAGTG-AACTAGACTCTAG-ATATGAGCTAAAG
*
26294793 TGATATGTCTCAAAGTGCGTGCTCATCTGTGAGTTCGGTTGGGT-ATTATATACTCAACGAGACA
1 TGATATGTCTCAAAGTGCGTGCTCCTCTGTGAGTTCGGTTGGGTAATTATATACTCAACGAGACA
26294857 AAG
66 AAG
26294860 ACTCTTATTA
Statistics
Matches: 139, Mismatches: 28, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
104 1 0.01
105 54 0.39
106 29 0.21
107 50 0.36
108 5 0.04
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.33
Consensus pattern (108 bp):
TGATATGTCTCAAAGTGCGTGCTCCTCTGTGAGTTCGGTTGGGTAATTATATACTCAACGAGACA
AAGTTTGCTCCTCAGTGAACTAGACTCTAGATATGAGCTAAAG
Found at i:26296437 original size:67 final size:67
Alignment explanation
Indices: 26296326--26296512 Score: 223
Period size: 67 Copynumber: 2.8 Consensus size: 67
26296316 TGTTCCATGG
* * * *
26296326 CAGACTCTCTATAATGCCATAGCTGAGCTTTGGTCTTACACATCATACCCTATGTCTAATGTCCT
1 CAGACTCTCTATATTGCCATAGTTGAGCTATGGTCTTACACATCATACCCTATGTCTAATATCCT
*
26296391 GG
66 GA
* * ** * *
26296393 C-GAACTCTCTATGTTGCCATAGTTGAGCTATAGTCTTACACATCATATTCGATGTTTAATATCC
1 CAG-ACTCTCTATATTGCCATAGTTGAGCTATGGTCTTACACATCATACCCTATGTCTAATATCC
26296457 TGA
65 TGA
* * * *
26296460 CAGACTCTTTATATTGCCATAGTCGAGTTATGGTCTTACACATTATACCCTAT
1 CAGACTCTCTATATTGCCATAGTTGAGCTATGGTCTTACACATCATACCCTAT
26296513 TACAACCCAT
Statistics
Matches: 98, Mismatches: 20, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
66 1 0.01
67 96 0.98
68 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.36
Consensus pattern (67 bp):
CAGACTCTCTATATTGCCATAGTTGAGCTATGGTCTTACACATCATACCCTATGTCTAATATCCT
GA
Found at i:26301084 original size:127 final size:127
Alignment explanation
Indices: 26300904--26301215 Score: 458
Period size: 127 Copynumber: 2.5 Consensus size: 127
26300894 ACGAAAAACT
* * * **
26300904 GAAACCCAGCGCGGTAGGGCACGATTCCCCAAATTTCCAAACATTGAACATTGCCTTGTTTTAGA
1 GAAACCCAGCACGATAGGGCATGATTCCCCAAATTTCCAAACATCAAACATTGCCTTGTTTTAGA
*
26300969 ATTTAAAAAACACGAGTGAAATTCTAAAGGAATATTTGATTATTTTGAACAAACG-GATAATC
66 ATTTAAAAAACACGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACGAGA-AATC
* *
26301031 GAAACCCAGCACGATAGGGCATGATTCCCCGAATTTCTAAACATCAAACATTGCCTTGTTTTAGA
1 GAAACCCAGCACGATAGGGCATGATTCCCCAAATTTCCAAACATCAAACATTGCCTTGTTTTAGA
* *
26301096 ATTTAGAAAACACGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAATGAGAAATC
66 ATTTAAAAAACACGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACGAGAAATC
*
26301158 GAAACCCAGCACGATAGGGCATGATT--CC----TTCCAAACATCAAATATTGCCTTCGTTTTA
1 GAAACCCAGCACGATAGGGCATGATTCCCCAAATTTCCAAACATCAAACATTGCCTT-GTTTTA
26301216 AGAAATTTTC
Statistics
Matches: 171, Mismatches: 12, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
121 21 0.12
122 6 0.04
125 2 0.01
127 140 0.82
128 2 0.01
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.28
Consensus pattern (127 bp):
GAAACCCAGCACGATAGGGCATGATTCCCCAAATTTCCAAACATCAAACATTGCCTTGTTTTAGA
ATTTAAAAAACACGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACGAGAAATC
Found at i:26305766 original size:22 final size:22
Alignment explanation
Indices: 26305741--26305782 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
26305731 TTAAAGGAGA
* *
26305741 CATAATTACTCAATTAATATCT
1 CATAACTACTCAAGTAATATCT
*
26305763 CATAACTATTCAAGTAATAT
1 CATAACTACTCAAGTAATAT
26305783 TACATGTATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.43, C:0.17, G:0.02, T:0.38
Consensus pattern (22 bp):
CATAACTACTCAAGTAATATCT
Found at i:26327460 original size:20 final size:20
Alignment explanation
Indices: 26327435--26327473 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
26327425 GGATTAAGCG
26327435 GCAAAGAGTTTAATATCCCC
1 GCAAAGAGTTTAATATCCCC
26327455 GCAAAGAGTTTAATATCCC
1 GCAAAGAGTTTAATATCCC
26327474 TTCACTAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (20 bp):
GCAAAGAGTTTAATATCCCC
Found at i:26327582 original size:49 final size:48
Alignment explanation
Indices: 26327518--26327613 Score: 138
Period size: 49 Copynumber: 2.0 Consensus size: 48
26327508 GAAAATTAAC
* *
26327518 GCTGAAATAGTTTCTCATTTTGACTTGAATCGATCTTGAACAAAATATA
1 GCTGAAATAATTTCTCATTTTGAC-TGAATCGATCTCGAACAAAATATA
* * *
26327567 GCTGAAATAATTTCTCGTTTTGACTGACTCGATCTCGAACTAAATAT
1 GCTGAAATAATTTCTCATTTTGACTGAATCGATCTCGAACAAAATAT
26327614 CAGAATTTTC
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
48 20 0.48
49 22 0.52
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (48 bp):
GCTGAAATAATTTCTCATTTTGACTGAATCGATCTCGAACAAAATATA
Found at i:26339754 original size:27 final size:27
Alignment explanation
Indices: 26339721--26339777 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
26339711 TACTATCATA
26339721 GTTAGTTTGAAGTGACTATAGATTAAT
1 GTTAGTTTGAAGTGACTATAGATTAAT
26339748 GTTAGTTTGAAGTGACTATAGATTAAT
1 GTTAGTTTGAAGTGACTATAGATTAAT
26339775 GTT
1 GTT
26339778 GCTTGCATGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.32, C:0.04, G:0.23, T:0.42
Consensus pattern (27 bp):
GTTAGTTTGAAGTGACTATAGATTAAT
Found at i:26342842 original size:21 final size:24
Alignment explanation
Indices: 26342795--26342848 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
26342785 TCGTTTATTT
26342795 TTATTTTT-TTACATATTATTACTA
1 TTATTTTTATTACATATTATTAC-A
26342819 TTATTTTTATTA-ATA-TATTA-A
1 TTATTTTTATTACATATTATTACA
26342840 TTATTTTTA
1 TTATTTTTA
26342849 AAGTATTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
21 10 0.34
23 5 0.17
24 11 0.38
25 3 0.10
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (24 bp):
TTATTTTTATTACATATTATTACA
Found at i:26342858 original size:21 final size:21
Alignment explanation
Indices: 26342800--26342860 Score: 63
Period size: 21 Copynumber: 2.8 Consensus size: 21
26342790 TATTTTTATT
*
26342800 TTTTTACATATTATTACTATTA
1 TTTTTAAATATTATTAC-ATTA
26342822 TTTTTATTAATA-TATTA-ATTA
1 TTTTTA--AATATTATTACATTA
26342843 TTTTTAAAGTATTATTAC
1 TTTTTAAA-TATTATTAC
26342861 TACTAATGAT
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
19 2 0.06
20 2 0.06
21 15 0.45
22 6 0.18
23 5 0.15
24 3 0.09
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.59
Consensus pattern (21 bp):
TTTTTAAATATTATTACATTA
Found at i:26343155 original size:10 final size:10
Alignment explanation
Indices: 26343128--26343214 Score: 65
Period size: 10 Copynumber: 8.8 Consensus size: 10
26343118 AAGTTTTTAA
*
26343128 TATTATATTT
1 TATTATATAT
26343138 TA-TATATAT
1 TATTATATAT
26343147 TATTATATAT
1 TATTATATAT
26343157 T-TTA-ATAT
1 TATTATATAT
26343165 TATTAGTTATAT
1 TATTA--TATAT
* * *
26343177 TTTTTTATAC
1 TATTATATAT
26343187 TATTATATA-
1 TATTATATAT
* *
26343196 TATATATCTAA
1 TAT-TATATAT
26343207 TATTATAT
1 TATTATAT
26343215 GGTATATTTC
Statistics
Matches: 62, Mismatches: 8, Indels: 14
0.74 0.10 0.17
Matches are distributed among these distances:
8 5 0.08
9 17 0.27
10 30 0.48
11 3 0.05
12 7 0.11
ACGTcount: A:0.37, C:0.02, G:0.01, T:0.60
Consensus pattern (10 bp):
TATTATATAT
Found at i:26343198 original size:44 final size:43
Alignment explanation
Indices: 26343130--26343246 Score: 132
Period size: 44 Copynumber: 2.7 Consensus size: 43
26343120 GTTTTTAATA
* *
26343130 TTATATTTTATATA-TATTATTATATAT-TTTAATATTAT-TAG
1 TTATATTTTTTATACTATTATTATATATATCTAATATTATAT-G
26343171 TTATATTTTTTTATACTATTATATATATATATCTAATATTATATG
1 TTATA-TTTTTTATACTATTAT-TATATATATCTAATATTATATG
* * *
26343216 GTATATTTCTAATACTATTATTTATATATAT
1 TTATATTTTTTATACTATTA-TTATATATAT
26343247 ATTTATATAT
Statistics
Matches: 65, Mismatches: 5, Indels: 9
0.82 0.06 0.11
Matches are distributed among these distances:
41 5 0.08
42 8 0.12
43 6 0.09
44 29 0.45
45 16 0.25
46 1 0.02
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (43 bp):
TTATATTTTTTATACTATTATTATATATATCTAATATTATATG
Found at i:26343226 original size:21 final size:20
Alignment explanation
Indices: 26343187--26343256 Score: 65
Period size: 21 Copynumber: 3.6 Consensus size: 20
26343177 TTTTTTATAC
26343187 TATTATATATATATATCTAA
1 TATTATATATATATATCTAA
* *
26343207 TATTATATGGTATATTTCTAA
1 TATTATAT-ATATATATCTAA
* * *
26343228 TACTAT-TATTTATATAT-A
1 TATTATATATATATATCTAA
26343246 TATT-TATATAT
1 TATTATATATAT
26343257 GTATGTATGT
Statistics
Matches: 39, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
17 1 0.03
18 8 0.21
19 6 0.15
20 9 0.23
21 15 0.38
ACGTcount: A:0.39, C:0.04, G:0.03, T:0.54
Consensus pattern (20 bp):
TATTATATATATATATCTAA
Found at i:26343249 original size:12 final size:12
Alignment explanation
Indices: 26343127--26343256 Score: 58
Period size: 14 Copynumber: 10.5 Consensus size: 12
26343117 TAAGTTTTTA
26343127 ATAT-TATATTT
1 ATATATATATTT
26343138 -TATATATA-TT
1 ATATATATATTT
26343148 AT-TATATATTT
1 ATATATATATTT
26343159 -TA-ATAT-TATT
1 ATATATATAT-TT
* *
26343169 AGTTATATTTTTTT
1 A--TATATATATTT
*
26343183 ATACTATTATATAT
1 ATA-TA-TATATTT
*
26343197 ATATATCTAATATT
1 ATATATAT-AT-TT
*
26343211 ATATGGTATATTT
1 ATAT-ATATATTT
*
26343224 CTAATACTATTATTT
1 AT-ATA-TA-TATTT
26343239 ATATATATATTT
1 ATATATATATTT
26343251 ATATAT
1 ATATAT
26343257 GTATGTATGT
Statistics
Matches: 90, Mismatches: 11, Indels: 35
0.66 0.08 0.26
Matches are distributed among these distances:
9 1 0.01
10 18 0.20
11 7 0.08
12 15 0.17
13 13 0.14
14 27 0.30
15 9 0.10
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.58
Consensus pattern (12 bp):
ATATATATATTT
Found at i:26347170 original size:39 final size:39
Alignment explanation
Indices: 26347116--26347191 Score: 143
Period size: 39 Copynumber: 1.9 Consensus size: 39
26347106 GAAAGTTTGC
26347116 GTAATAGCTGAATCAAAAATGGAAAAATGTTTTGTAAGT
1 GTAATAGCTGAATCAAAAATGGAAAAATGTTTTGTAAGT
*
26347155 GTAATAGCTGAATCAAAAATGGCAAAATGTTTTGTAA
1 GTAATAGCTGAATCAAAAATGGAAAAATGTTTTGTAA
26347192 TGAACTCTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.43, C:0.07, G:0.20, T:0.30
Consensus pattern (39 bp):
GTAATAGCTGAATCAAAAATGGAAAAATGTTTTGTAAGT
Found at i:26355730 original size:74 final size:74
Alignment explanation
Indices: 26355627--26357474 Score: 2827
Period size: 74 Copynumber: 24.9 Consensus size: 74
26355617 TGATGCTGTT
* **
26355627 ATTTCTATTTTC--AAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAG
1 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
26355690 GTAATTTTA
66 GTAATTTTA
26355699 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
1 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
26355764 GTAATTTTA
66 GTAATTTTA
** *
26355773 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
*
26355838 GTAATTTCA
66 GTAATTTTA
* * * *** ** *
26355847 ATTTCTGTTGTC-AAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAAGACATGCTGAG
1 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
*
26355911 GT-ATTGTCA
66 GTAATT-TTA
* * **
26355920 ATTTTTTGTATGTTTC--AAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGC
1 A---TTTCTAT-TTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGC
26355983 TGAGGTAATTTTA
62 TGAGGTAATTTTA
26355996 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
1 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
26356061 GTAATTTTA
66 GTAATTTTA
26356070 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
1 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
26356135 GTAATTTTA
66 GTAATTTTA
26356144 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
1 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
26356209 GTAATTTTA
66 GTAATTTTA
26356218 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
1 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
26356283 GTAATTTTA
66 GTAATTTTA
26356292 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
1 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
26356357 GTAATTTTA
66 GTAATTTTA
26356366 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
1 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
26356431 GTAATTTTA
66 GTAATTTTA
26356440 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
1 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
26356505 GTAATTTTA
66 GTAATTTTA
* ** *
26356514 ATTTCTATTTTCAAAAAAATCAACTCATATTGAGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
*
26356579 GTAATTTCA
66 GTAATTTTA
* * * *** ** *
26356588 ATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAAGACATGCTGAG
1 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
* * *
26356653 GTACTGTCA
66 GTAATTTTA
* * **
26356662 ATTTTTTGTATGTTTC--AAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGC
1 A---TTTCTAT-TTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGC
26356725 TGAGGTAATTTTA
62 TGAGGTAATTTTA
26356738 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
1 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
26356803 GTAATTTTA
66 GTAATTTTA
26356812 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
1 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
26356877 GTAATTTTA
66 GTAATTTTA
26356886 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
1 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
26356951 GTAATTTTA
66 GTAATTTTA
26356960 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
1 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
26357025 GTAATTTTA
66 GTAATTTTA
26357034 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
1 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
26357099 GTAATTTTA
66 GTAATTTTA
** *
26357108 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
26357173 GTAATTTTA
66 GTAATTTTA
* ** *
26357182 ATTTCTATTTTCAAGAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
26357247 GTAATTTTA
66 GTAATTTTA
* ** * *
26357256 ATTTCTATTTTCAAGAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAA
1 ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
*
26357321 GTAATTTCA
66 GTAATTTTA
* * * ** ** *
26357330 ATTTCTGTTGTCAAAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAAGACATGCTG
1 ATTTCTATTTTC--AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTG
26357395 AGGTATTGTCAATTTT-
64 A-G----GT-AATTTTA
* * * ** * *
26357411 TTTTGTATGTTTC--AAAAATCAACTCATATTGCCAGAGGTGAATTGAGCCTCAGGACACGCTGA
1 ATTTCTAT-TTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGA
26357474 G
65 G
26357475 TGAGTTGAGC
Statistics
Matches: 1665, Mismatches: 86, Indels: 45
0.93 0.05 0.03
Matches are distributed among these distances:
72 23 0.01
73 64 0.04
74 1350 0.81
76 153 0.09
77 12 0.01
78 48 0.03
81 7 0.00
82 8 0.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (74 bp):
ATTTCTATTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAG
GTAATTTTA
Found at i:26357753 original size:44 final size:45
Alignment explanation
Indices: 26357664--26357762 Score: 103
Period size: 44 Copynumber: 2.2 Consensus size: 45
26357654 TGAAGCTGTT
* **
26357664 AATCTTATAT-TTCTGAAGTCACAGTAAAGTAGATCGAAGTTACA
1 AATCTTATATCCTCTGAAGTCACAGTAAAGTAGATCGAAGCCACA
* * * *
26357708 AATCTTATATCCT-TGAAGTTACATTGAAGTAGATTGAAGCCACA
1 AATCTTATATCCTCTGAAGTCACAGTAAAGTAGATCGAAGCCACA
* *
26357752 AAGCATATATC
1 AATCTTATATC
26357763 AGAAGATGCA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
44 44 0.98
45 1 0.02
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (45 bp):
AATCTTATATCCTCTGAAGTCACAGTAAAGTAGATCGAAGCCACA
Found at i:26358953 original size:21 final size:21
Alignment explanation
Indices: 26358897--26358956 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
26358887 CCTTCCNTTT
26358897 ATACTATTATATATATATCTA
1 ATACTATTATATATATATCTA
* * *
26358918 ATATTA-TATGGTATATTTCTA
1 ATACTATTAT-ATATATATCTA
*
26358939 ATACTATTATTTATATAT
1 ATACTATTATATATATAT
26358957 ATTTATATAT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
20 3 0.10
21 25 0.81
22 3 0.10
ACGTcount: A:0.38, C:0.07, G:0.03, T:0.52
Consensus pattern (21 bp):
ATACTATTATATATATATCTA
Found at i:26359276 original size:27 final size:26
Alignment explanation
Indices: 26359238--26359288 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 26
26359228 TTTGATACTA
26359238 TGTTTTTTTAATACCATAT-ATGTCG
1 TGTTTTTTTAATACCATATGATGTCG
*
26359263 TGTTTATTCTTAATACTATATGATGT
1 TGTTT-TT-TTAATACCATATGATGT
26359289 ATGTACTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 5 0.23
26 2 0.09
27 11 0.50
28 4 0.18
ACGTcount: A:0.25, C:0.10, G:0.12, T:0.53
Consensus pattern (26 bp):
TGTTTTTTTAATACCATATGATGTCG
Found at i:26363942 original size:26 final size:26
Alignment explanation
Indices: 26363909--26364016 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
26363899 TGATACAAAT
26363909 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
26363935 TGACAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
26363961 TGATAATGGGTTAGATAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
26363987 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26364013 TGAT
1 TGAT
26364017 GGGAATTTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Done.