Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold918.1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 661660
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32
Warning! 5932 characters in sequence are not A, C, G, or T
File 1 of 3
Found at i:1998 original size:25 final size:28
Alignment explanation
Indices: 1940--1998 Score: 65
Period size: 25 Copynumber: 2.3 Consensus size: 28
1930 TTTCACTTTC
*
1940 AATCATTATTCAATTCAATTCCACACAT
1 AATCATTAATCAATTCAATTCCACACAT
*
1968 -AT-ATTAATC-ATTCAA-T-CACACTT
1 AATCATTAATCAATTCAATTCCACACAT
1991 AATCATTA
1 AATCATTA
1999 CATGATCTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
23 6 0.22
24 3 0.11
25 10 0.37
26 6 0.22
27 2 0.07
ACGTcount: A:0.41, C:0.22, G:0.00, T:0.37
Consensus pattern (28 bp):
AATCATTAATCAATTCAATTCCACACAT
Found at i:2151 original size:51 final size:51
Alignment explanation
Indices: 2093--2282 Score: 201
Period size: 51 Copynumber: 3.7 Consensus size: 51
2083 CCGGTTCATA
* *
2093 TAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCTGATACATG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCTGGTACATG
* * * *
2144 TAGTAGCCTGCACATAGTACTACACACATGATCA-AAGCTATCCGGT--ATG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATCA-CTATCTGGTACATG
* * * *
2193 CATAGTAGCCTGCACATAGTACTACACATGCGAGCTATCA-T-TCTGGTACACG
1 --TAGTAGCCTGCACATAGTACTACACACGTGA-CCATCACTATCTGGTACATG
* *
2245 TAGTAGCCTGCACAAAATACTACACACGTGACCATCAC
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATCAC
2283 ATTCACTTTC
Statistics
Matches: 112, Mismatches: 19, Indels: 17
0.76 0.13 0.11
Matches are distributed among these distances:
49 8 0.07
50 33 0.29
51 67 0.60
52 3 0.03
53 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCTGGTACATG
Found at i:2298 original size:101 final size:103
Alignment explanation
Indices: 2087--2309 Score: 240
Period size: 101 Copynumber: 2.2 Consensus size: 103
2077 ATGATACCGG
* * *
2087 TTCATATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCTGATACATGTAGTAGCC
1 TTCACATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCTGATACACGTAGTAGCC
* * * **
2152 TGCACATAGTACTACACACATGATCAAAGCTATCCGGT
66 TGCACAAAATACTACACACATGACCAAAGCTATCCACT
* * * *
2190 AT-GCATAGTAGCCTGCACATAGTACTACACATGCGAGCTATCA-T-TCTGGTACACGTAGTAGC
1 TTCACATAGTAGCCTGCACATAGTACTACACATGCGA-CCATCACTATCTGATACACGTAGTAGC
* * *
2252 CTGCACAAAATACTACACACGTGACCATCA-C-ATTCACT
65 CTGCACAAAATACTACACACATGACCA-AAGCTATCCACT
* *
2290 TTCACATAGTGGCCTACACA
1 TTCACATAGTAGCCTGCACA
2310 CAGCCCATGC
Statistics
Matches: 98, Mismatches: 19, Indels: 8
0.78 0.15 0.06
Matches are distributed among these distances:
100 5 0.05
101 54 0.55
102 33 0.34
103 6 0.06
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.26
Consensus pattern (103 bp):
TTCACATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCTGATACACGTAGTAGCC
TGCACAAAATACTACACACATGACCAAAGCTATCCACT
Found at i:4014 original size:37 final size:37
Alignment explanation
Indices: 3964--4042 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
3954 TTATTACGAA
* * *
3964 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
4001 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
4038 GTCTT
1 GTCTT
4043 TAGAGCTCGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:4238 original size:47 final size:47
Alignment explanation
Indices: 4160--5204 Score: 1964
Period size: 47 Copynumber: 22.2 Consensus size: 47
4150 CCCTTCGGGA
* * * * * **
4160 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
4207 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
4254 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
4301 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
4348 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
4395 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
4442 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
4489 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
4536 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
4583 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
4630 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
4677 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
4724 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
4771 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
4818 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
4865 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
4912 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
4959 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
5006 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
5053 CTTATCACATATATATACACTTTCACATTCATCCCATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
5102 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
5149 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
5196 CTTATCACA
1 CTTATCACA
5205 ATTTAGAATT
Statistics
Matches: 980, Mismatches: 16, Indels: 4
0.98 0.02 0.00
Matches are distributed among these distances:
47 935 0.95
49 45 0.05
ACGTcount: A:0.31, C:0.30, G:0.07, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
Found at i:8678 original size:46 final size:48
Alignment explanation
Indices: 8625--8749 Score: 157
Period size: 48 Copynumber: 2.6 Consensus size: 48
8615 TATGTGTGCT
* * *
8625 AGTGTAAGACATGTTTAGGACATGCATCAGCCAC-ATAT-TGA-GAGCC
1 AGTGTAAGACATGTTTGGGACATGCATCAGCCACGAGATAT-ACCAGCC
* * *
8671 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACCAGCC
1 AGTGTAAGACATGTTTGGGACATGCATCAGCCACGAGATATACCAGCC
*
8719 AGTGTGAGACATGTTTGGGACATGCATCAGC
1 AGTGTAAGACATGTTTGGGACATGCATCAGC
8750 AAAATCAGGT
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 30 0.45
47 4 0.06
48 33 0.49
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACATGTTTGGGACATGCATCAGCCACGAGATATACCAGCC
Found at i:9219 original size:44 final size:47
Alignment explanation
Indices: 9163--9284 Score: 146
Period size: 44 Copynumber: 2.6 Consensus size: 47
9153 TATACAAGCT
* *
9163 AGTGTAAAACCTGTCTGGGACATGGCGTC-AGC-TTG-T-TGCGTGT-C
1 AGTGTAAGACCTGTCTGGGACATGGCGTCGA-CTTTGATGTGC-TATCC
*
9207 AGTGTAAGACCTGTCTGGGACATGGCATCGACTTTGATGTGCTATCC
1 AGTGTAAGACCTGTCTGGGACATGGCGTCGACTTTGATGTGCTATCC
*
9254 AGCGTAAGACCATGTCTGGGACATGGCGTCG
1 AGTGTAAGACC-TGTCTGGGACATGGCGTCG
9285 TCATCTTATC
Statistics
Matches: 67, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
44 28 0.42
45 4 0.06
46 3 0.04
47 14 0.21
48 18 0.27
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.27
Consensus pattern (47 bp):
AGTGTAAGACCTGTCTGGGACATGGCGTCGACTTTGATGTGCTATCC
Found at i:12001 original size:34 final size:35
Alignment explanation
Indices: 11935--12003 Score: 88
Period size: 34 Copynumber: 2.0 Consensus size: 35
11925 GTCTCAGTTA
* * *
11935 GGGCCTTAGCCTCTTTTTAGTAACGGTAGTAGTCT
1 GGGCCTAAGCCTCATTTTAGTAACAGTAGTAGTCT
11970 GGGCCTAAGCC-CATTTTAGTAACAG-AGGTAGTCT
1 GGGCCTAAGCCTCATTTTAGTAACAGTA-GTAGTCT
12004 ATGCCCTAGC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
33 1 0.03
34 19 0.63
35 10 0.33
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (35 bp):
GGGCCTAAGCCTCATTTTAGTAACAGTAGTAGTCT
Found at i:20642 original size:40 final size:40
Alignment explanation
Indices: 20587--20831 Score: 286
Period size: 40 Copynumber: 6.2 Consensus size: 40
20577 CGGATGACAA
*
20587 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCG
1 CGAAGGCATTTGTGCTAGTGACTATA-TCCGGGCTAAGTCC
* *
20627 CGAAGGCATTTGTGCTAGTGAATA-ATTTCGGGCTAAGTCC
1 CGAAGGCATTTGTGCTAGTGACTATA-TCCGGGCTAAGTCC
* * *
20667 CGAAGGCACTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCC
*
20707 CGAAGGCATTTGTG-TGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCT-AGTGACTATATCCGGGCTAAGTCC
* *
20747 CGAAGGCATTGGTGCGAGCT-ACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTCC
* * * *
20787 CGAAGGCATTTGAGCGAGT-AGCTATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCTAGTGA-CTATATCCGGGCTAAGTCC
20826 CGAAGG
1 CGAAGG
20832 TACTTGGTTT
Statistics
Matches: 184, Mismatches: 16, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
39 16 0.09
40 166 0.90
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCC
Found at i:28586 original size:40 final size:40
Alignment explanation
Indices: 28511--28675 Score: 192
Period size: 40 Copynumber: 4.2 Consensus size: 40
28501 CGGATGACAA
* *
28511 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
*
28551 CGAAGGCATTTGTGCGAGTTACTATATCCGAGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* * * *
28591 CGAAGGCATTGGTGCGAGCTATTATATCCGGGCTAAGTCT
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
** * *
28631 CGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCC
28670 CGAAGG
1 CGAAGG
28676 TACTTTGTTT
Statistics
Matches: 108, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
39 15 0.14
40 92 0.85
41 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:41432 original size:42 final size:42
Alignment explanation
Indices: 41324--41444 Score: 100
Period size: 42 Copynumber: 2.8 Consensus size: 42
41314 AACAAGTACA
* * * * *
41324 ATGCCGACGTCCCAGACGTGGTCTTAAATCTAATTCAATATCG
1 ATGCCGATGTCCCAAACATGGTCTTAAA-CGAAATCAATATCG
** * * * *
41367 ATGCCTCTGTCCCATATAGGGTCTTACACGAAATCAAATAT-G
1 ATGCCGATGTCCCAAACATGGTCTTAAACGAAATC-AATATCG
*
41409 ATGCCGATGTCCCAAACATGGTCTTATACGTAAATC
1 ATGCCGATGTCCCAAACATGGTCTTAAACG-AAATC
41445 TCAATCGAGG
Statistics
Matches: 60, Mismatches: 16, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
42 30 0.50
43 30 0.50
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (42 bp):
ATGCCGATGTCCCAAACATGGTCTTAAACGAAATCAATATCG
Found at i:43931 original size:27 final size:27
Alignment explanation
Indices: 43901--43988 Score: 95
Period size: 27 Copynumber: 3.3 Consensus size: 27
43891 ATTACCAAAG
* * * * *
43901 TACCCTCAATTTATAGAGTTATCGTTT
1 TACCCTCAATTTACAAAATTACCATTT
*
43928 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCAATTTACAAAATTACCATTT
* * *
43955 TACCCTCAGTTTACAAAACTACCGTTT
1 TACCCTCAATTTACAAAATTACCATTT
43982 TACCCTC
1 TACCCTC
43989 GATTGTGAAA
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.28, C:0.27, G:0.07, T:0.38
Consensus pattern (27 bp):
TACCCTCAATTTACAAAATTACCATTT
Found at i:43946 original size:54 final size:54
Alignment explanation
Indices: 43888--43992 Score: 129
Period size: 54 Copynumber: 1.9 Consensus size: 54
43878 CTCGACTTGT
* * ** *
43888 AAAATTACCAAAGTACCCTCAATTTATAGAGTTATCGTTTTACCCTCGATTTAC
1 AAAATTACCAAAGTACCCTCAATTTACAAAACTACCGTTTTACCCTCGATTTAC
*** *
43942 AAAATTACCATTTTACCCTCAGTTTACAAAACTACCGTTTTACCCTCGATT
1 AAAATTACCAAAGTACCCTCAATTTACAAAACTACCGTTTTACCCTCGATT
43993 GTGAAATTAC
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 42 1.00
ACGTcount: A:0.32, C:0.25, G:0.08, T:0.35
Consensus pattern (54 bp):
AAAATTACCAAAGTACCCTCAATTTACAAAACTACCGTTTTACCCTCGATTTAC
Found at i:44054 original size:27 final size:27
Alignment explanation
Indices: 44024--44120 Score: 117
Period size: 27 Copynumber: 3.6 Consensus size: 27
44014 TGTAGGATAG
44024 AATTACCAAAATACCCATAGTTTGTAA
1 AATTACCAAAATACCCATAGTTTGTAA
* *
44051 AATTACCAAAATA-CCACTGGTTTGTGA
1 AATTACCAAAATACCCA-TAGTTTGTAA
* * *
44078 AATTATCGAAATACCC-TCAATTTGTAA
1 AATTACCAAAATACCCAT-AGTTTGTAA
44105 AATTACCAAAATACCC
1 AATTACCAAAATACCC
44121 CCAATTTACA
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
26 4 0.07
27 52 0.90
28 2 0.03
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCATAGTTTGTAA
Found at i:44063 original size:54 final size:54
Alignment explanation
Indices: 43982--44121 Score: 135
Period size: 54 Copynumber: 2.6 Consensus size: 54
43972 ACTACCGTTT
* * **
43982 TACCCTCGA-TTGTGAAATTACTGAAATACCCCT-GTAGGAT-AGAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGGTAGG-TGA-AATTACCAAAA
* * ** * *
44035 TACCCAT-AGTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTATCGAAA
1 TACCC-TCAATTTGTAAAATTACCAAAATACCCCTGGTAGGTGAAATTACCAAAA
44089 TACCCTCAATTTGTAAAATTACCAAAATACCCC
1 TACCCTCAATTTGTAAAATTACCAAAATACCCC
44122 CAATTTACAA
Statistics
Matches: 70, Mismatches: 12, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
53 6 0.09
54 60 0.86
55 4 0.06
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCCTGGTAGGTGAAATTACCAAAA
Found at i:44125 original size:27 final size:27
Alignment explanation
Indices: 44024--44147 Score: 115
Period size: 27 Copynumber: 4.6 Consensus size: 27
44014 TGTAGGATAG
** *
44024 AATTACCAAAATACCCATAGTTTGTAA
1 AATTACCAAAATACCCCCAATTTGTAA
* *** *
44051 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCCAATTTGTAA
* * *
44078 AATTATCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCCCAATTTGTAA
**
44105 AATTACCAAAATACCCCCAATTTACAA
1 AATTACCAAAATACCCCCAATTTGTAA
44132 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
44148 TTGACTTTCT
Statistics
Matches: 79, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
26 2 0.03
27 77 0.97
ACGTcount: A:0.44, C:0.22, G:0.07, T:0.27
Consensus pattern (27 bp):
AATTACCAAAATACCCCCAATTTGTAA
Found at i:44135 original size:54 final size:54
Alignment explanation
Indices: 44044--44148 Score: 131
Period size: 54 Copynumber: 1.9 Consensus size: 54
44034 ATACCCATAG
*** ***
44044 TTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTATC-GAAATACCCTCAA
1 TTTGTAAAATTACCAAAATACCACCAATTTACAAAATTA-CAGAAATACCCTCAA
*
44098 TTTGTAAAATTACCAAAATACCCCCAATTTACAAAATTACAGAAATACCCT
1 TTTGTAAAATTACCAAAATACCACCAATTTACAAAATTACAGAAATACCCT
44149 TGACTTTCTA
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
53 1 0.02
54 42 0.98
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.30
Consensus pattern (54 bp):
TTTGTAAAATTACCAAAATACCACCAATTTACAAAATTACAGAAATACCCTCAA
Found at i:44198 original size:27 final size:27
Alignment explanation
Indices: 44125--44210 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 27
44115 ATACCCCCAA
* *
44125 TTTACAAAATTACAGAAATACCCTTGAC
1 TTTACAAAATTACTGAAATACCCTTG-G
*
44153 TTT-CTAAAAATTA-TAGAAATACCATTGG
1 TTTAC--AAAATTACT-GAAATACCCTTGG
44181 TTTACAAAATTACTGAAATACCCTTGG
1 TTTACAAAATTACTGAAATACCCTTGG
44208 TTT
1 TTT
44211 GTAGATTTAC
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
27 23 0.47
28 7 0.14
29 19 0.39
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.35
Consensus pattern (27 bp):
TTTACAAAATTACTGAAATACCCTTGG
Found at i:44294 original size:27 final size:27
Alignment explanation
Indices: 44251--44324 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
44241 AAATGACTAA
*
44251 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
* **
44278 AA-AGCCCCTTTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
*
44305 AATACCCCTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
44325 TGGCGAATAG
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.22, G:0.19, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:45215 original size:24 final size:25
Alignment explanation
Indices: 45139--45208 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
45129 AGGAAGTGCT
* *
45139 AAAAA-GGCTATGCCCCAGTTTACC
1 AAAAAGGGCTTTGCCCCAGTTTATC
*
45163 GAAAAGGGCTTTGCCCCAGTTTATC
1 AAAAAGGGCTTTGCCCCAGTTTATC
45188 AAAAAGGGCTTTGCCCCAGTT
1 AAAAAGGGCTTTGCCCCAGTT
45209 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
24 4 0.10
25 37 0.90
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (25 bp):
AAAAAGGGCTTTGCCCCAGTTTATC
Found at i:45221 original size:24 final size:24
Alignment explanation
Indices: 45138--45233 Score: 86
Period size: 25 Copynumber: 3.9 Consensus size: 24
45128 GAGGAAGTGC
*
45138 TAAAAAGGCTATGCCCCAGTTTACC
1 TAAAAAGGCTATGCCCCAGTTTA-T
* * *
45163 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAAGGCTATGCCCCAGTTTAT
* *
45187 CAAAAAGGGCTTTGCCCCAG-TTAT
1 TAAAAA-GGCTATGCCCCAGTTTAT
*
45211 TAAAAGAGGCTAGGCCTCCAGTT
1 TAAAA-AGGCTATGCC-CCAGTT
45234 ATATGATAAA
Statistics
Matches: 58, Mismatches: 9, Indels: 7
0.78 0.12 0.09
Matches are distributed among these distances:
24 19 0.33
25 38 0.66
26 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (24 bp):
TAAAAAGGCTATGCCCCAGTTTAT
Found at i:45479 original size:31 final size:31
Alignment explanation
Indices: 45430--45543 Score: 187
Period size: 31 Copynumber: 3.7 Consensus size: 31
45420 CGTTTACAGT
45430 AAAGGCTTCGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
45460 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
45491 AAAGGCTTTGGCCCAGTGATATGATTTCTGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
45522 AAAGGCTTCGACCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
45544 TCGAGACTGA
Statistics
Matches: 79, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
30 16 0.20
31 63 0.80
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:48265 original size:47 final size:47
Alignment explanation
Indices: 48214--48361 Score: 206
Period size: 47 Copynumber: 3.1 Consensus size: 47
48204 TTTAGGATTT
48214 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* *
48261 AATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* ** * ** * *
48308 AATGTGGTGAATACGAACATGCATATATGTGGTAAATCTGAATGGCT
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
48355 AATGTGA
1 AATGTGA
48362 AATATGTATG
Statistics
Matches: 88, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 88 1.00
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.27
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
Found at i:48317 original size:25 final size:25
Alignment explanation
Indices: 48242--48317 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
48232 ATGCATATAT
48242 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
48267 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
48289 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
48314 GTGA
1 GTGA
48318 ATACGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:48490 original size:98 final size:96
Alignment explanation
Indices: 48332--48515 Score: 289
Period size: 98 Copynumber: 1.9 Consensus size: 96
48322 GAACATGCAT
* * * *
48332 ATATGTGGTAAATCTGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGATAAAGCCGA
48397 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
48428 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGATAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGATATGTATATGTGATAAAGC
*
48492 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
48516 GGCGATGTGC
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
95 1 0.01
96 25 0.31
97 2 0.03
98 52 0.65
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.32
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGATAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:48531 original size:50 final size:48
Alignment explanation
Indices: 48331--48515 Score: 282
Period size: 48 Copynumber: 3.8 Consensus size: 48
48321 CGAACATGCA
* *
48331 TATATGTGGTAAATCTGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
48379 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
48427 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
* *
48477 TATATGTGATAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
48516 GGCGATGTGC
Statistics
Matches: 125, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
47 1 0.01
48 79 0.63
49 4 0.03
50 40 0.32
51 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.25, T:0.32
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:48748 original size:74 final size:74
Alignment explanation
Indices: 48663--49545 Score: 1644
Period size: 74 Copynumber: 11.9 Consensus size: 74
48653 AAATATATTA
* *
48663 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGT-TCGGGTAAGACCCGATGACTACATGTGG
1 CGGGTAAGACCCGATGACTACATGTGGAGATTATGTCT-GGGTAAGACCCGATGACTACGTGTGG
48727 AGATTATG-T
65 AGATTATGTT
* *
48736 CTGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGG
1 C-GGGTAAGACCCGATGACTACATGTGGAGATTATGTCTGGGTAAGACCCGATGACTACGTGTGG
48801 AGATTATGTT
65 AGATTATGTT
48811 CGGGTAAGACCCGATGACTACATGTGGAGATTATGTCTGGGTAAGACCCGATGACTACGTGTGGA
1 CGGGTAAGACCCGATGACTACATGTGGAGATTATGTCTGGGTAAGACCCGATGACTACGTGTGGA
48876 GATTATGTT
66 GATTATGTT
48885 CGGGTAAGACCCGATGACTACATGTGGAGATTATGTCTGGGTAAGACCCGATGACTACGTGTGGA
1 CGGGTAAGACCCGATGACTACATGTGGAGATTATGTCTGGGTAAGACCCGATGACTACGTGTGGA
48950 GATTATGTT
66 GATTATGTT
48959 CGGGTAAGACCCGATGACTACATGTGGAGATTATGTCTGGGTAAGACCCGATGACTACGTGTGGA
1 CGGGTAAGACCCGATGACTACATGTGGAGATTATGTCTGGGTAAGACCCGATGACTACGTGTGGA
49024 GATTATGTT
66 GATTATGTT
49033 CGGGTAAGACCCGATGACTACATGTGGAGATTATGTCTGGGTAAGACCCGATGACTACGTGTGGA
1 CGGGTAAGACCCGATGACTACATGTGGAGATTATGTCTGGGTAAGACCCGATGACTACGTGTGGA
49098 GATTATGTT
66 GATTATGTT
49107 CGGGTAAGACCCGATGACTACATGTGGAGATTATGTCTGGGTAAGACCCGATGACTACGTGTGGA
1 CGGGTAAGACCCGATGACTACATGTGGAGATTATGTCTGGGTAAGACCCGATGACTACGTGTGGA
49172 GATTATGTT
66 GATTATGTT
49181 CGGGTAAGACCCGATGACTACATGTGGAGATTATGTCTGGGTAAGACCCGATGACTACGTGTGGA
1 CGGGTAAGACCCGATGACTACATGTGGAGATTATGTCTGGGTAAGACCCGATGACTACGTGTGGA
49246 GATTATGTT
66 GATTATGTT
49255 CGGGTAAGACCCGATGACTACATGTGGAGATTATGTCTGGGTAAGACCCGATGACTACGTGTGGA
1 CGGGTAAGACCCGATGACTACATGTGGAGATTATGTCTGGGTAAGACCCGATGACTACGTGTGGA
49320 GATTATGTT
66 GATTATGTT
49329 CGGGTAAGACCCGATGACTACATGTGGAGATTATGTCTGGGTAAGACCCGATGACTACGTGTGGA
1 CGGGTAAGACCCGATGACTACATGTGGAGATTATGTCTGGGTAAGACCCGATGACTACGTGTGGA
49394 GATTATGTT
66 GATTATGTT
49403 CGGGTAAGACCCGATGACTACATGTGGAGATTATGTCTGGGTAAGACCCGATGACTACGTGTGGA
1 CGGGTAAGACCCGATGACTACATGTGGAGATTATGTCTGGGTAAGACCCGATGACTACGTGTGGA
*
49468 GATTATGTC
66 GATTATGTT
* * * * *
49477 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTAAGACCCGATAACTTCGTGTGGA
1 CGGGTAAGACCCGATGACTACATGTGGAGATTATGTCTGGGTAAGACCCGATGACTACGTGTGGA
49542 GATT
66 GATT
49546 TCGTCTGAGC
Statistics
Matches: 797, Mismatches: 10, Indels: 5
0.98 0.01 0.01
Matches are distributed among these distances:
73 1 0.00
74 794 1.00
75 2 0.00
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (74 bp):
CGGGTAAGACCCGATGACTACATGTGGAGATTATGTCTGGGTAAGACCCGATGACTACGTGTGGA
GATTATGTT
Found at i:49546 original size:37 final size:37
Alignment explanation
Indices: 48663--49545 Score: 1469
Period size: 37 Copynumber: 23.9 Consensus size: 37
48653 AAATATATTA
*
48663 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
*
48700 CGGGTAAGACCCGATGACTACATGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
*
48737 TGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
*
48774 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
*
48811 CGGGTAAGACCCGATGACTACATGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
* *
48848 TGGGTAAGACCCGATGACTACGTGTGGAGATTATGTT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
*
48885 CGGGTAAGACCCGATGACTACATGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
* *
48922 TGGGTAAGACCCGATGACTACGTGTGGAGATTATGTT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
*
48959 CGGGTAAGACCCGATGACTACATGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
* *
48996 TGGGTAAGACCCGATGACTACGTGTGGAGATTATGTT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
*
49033 CGGGTAAGACCCGATGACTACATGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
* *
49070 TGGGTAAGACCCGATGACTACGTGTGGAGATTATGTT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
*
49107 CGGGTAAGACCCGATGACTACATGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
* *
49144 TGGGTAAGACCCGATGACTACGTGTGGAGATTATGTT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
*
49181 CGGGTAAGACCCGATGACTACATGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
* *
49218 TGGGTAAGACCCGATGACTACGTGTGGAGATTATGTT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
*
49255 CGGGTAAGACCCGATGACTACATGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
* *
49292 TGGGTAAGACCCGATGACTACGTGTGGAGATTATGTT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
*
49329 CGGGTAAGACCCGATGACTACATGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
* *
49366 TGGGTAAGACCCGATGACTACGTGTGGAGATTATGTT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
*
49403 CGGGTAAGACCCGATGACTACATGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
*
49440 TGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
*
49477 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
* *
49514 CGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATT
49546 TCGTCTGAGC
Statistics
Matches: 784, Mismatches: 62, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 784 1.00
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (37 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
Found at i:50871 original size:40 final size:40
Alignment explanation
Indices: 50816--51373 Score: 909
Period size: 40 Copynumber: 13.9 Consensus size: 40
50806 GAGAATTGAG
*
50816 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
50856 AGTGATGTATTCGGGCTAAGTCCCAAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
50896 AGTGATATATCCGGGCTAAGTCCTGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
50936 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
50976 TGTGATGTAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
51016 AGTGATATATCCGGGCTAAGTCCTGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
51056 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
51096 TGTGATGTAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
51136 AGTGATATATCCGGGCTAAGTCCTGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
51176 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
51216 TGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
51256 AGTGATATATCCGGGCTAAGTCCTGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
**
51296 AGTGATGTATCCGAACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
**
51336 AGTGATGTATCCGCACTAAGTCCCGAAGAGCATTCGTG
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTG
51374 TCCCGAAGAG
Statistics
Matches: 478, Mismatches: 40, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 478 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:51029 original size:120 final size:120
Alignment explanation
Indices: 50816--51373 Score: 1017
Period size: 120 Copynumber: 4.7 Consensus size: 120
50806 GAGAATTGAG
* * * * *
50816 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATTCGGGCTAAGTCCCA
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCTTGTGATGTATCCGGGCTAAGTCCCG
50881 AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCTGAAGAGCATTCGTGCT
66 AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCTGAAGAGCATTCGTGCT
*
50936 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCTTGTGATGTAGCCGGGCTAAGTCCCG
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCTTGTGATGTATCCGGGCTAAGTCCCG
51001 AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCTGAAGAGCATTCGTGCT
66 AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCTGAAGAGCATTCGTGCT
*
51056 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCTTGTGATGTAGCCGGGCTAAGTCCCG
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCTTGTGATGTATCCGGGCTAAGTCCCG
51121 AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCTGAAGAGCATTCGTGCT
66 AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCTGAAGAGCATTCGTGCT
51176 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCTTGTGATGTATCCGGGCTAAGTCCCG
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCTTGTGATGTATCCGGGCTAAGTCCCG
51241 AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCTGAAGAGCATTCGTGCT
66 AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCTGAAGAGCATTCGTGCT
* * **
51296 AGTGATGTATCCGAACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGCACTAAGTCCCG
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCTTGTGATGTATCCGGGCTAAGTCCCG
51361 AAGAGCATTCGTG
66 AAGAGCATTCGTG
51374 TCCCGAAGAG
Statistics
Matches: 427, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
120 427 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (120 bp):
AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCTTGTGATGTATCCGGGCTAAGTCCCG
AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCTGAAGAGCATTCGTGCT
Found at i:51378 original size:18 final size:18
Alignment explanation
Indices: 51355--51391 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
51345 TCCGCACTAA
51355 GTCCCGAAGAGCATTCGT
1 GTCCCGAAGAGCATTCGT
51373 GTCCCGAAGAGCATTCGT
1 GTCCCGAAGAGCATTCGT
51391 G
1 G
51392 CTAGTGATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.27, G:0.30, T:0.22
Consensus pattern (18 bp):
GTCCCGAAGAGCATTCGT
Found at i:51405 original size:58 final size:58
Alignment explanation
Indices: 51315--51431 Score: 225
Period size: 58 Copynumber: 2.0 Consensus size: 58
51305 TCCGAACTAA
51315 GTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGCACTAAGTCCCGAAGAGCATTCGT
1 GTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGCACTAAGTCCCGAAGAGCATTCGT
*
51373 GTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGT
1 GTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGCACTAAGTCCCGAAGAGCATTCGT
51431 G
1 G
51432 CTAGTGATGT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (58 bp):
GTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGCACTAAGTCCCGAAGAGCATTCGT
Found at i:51452 original size:98 final size:98
Alignment explanation
Indices: 51275--51471 Score: 367
Period size: 98 Copynumber: 2.0 Consensus size: 98
51265 TCCGGGCTAA
*
51275 GTCCTGAAGAGCATTCGTGCTAGTGATGTATCCGAACTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 GTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGAACTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
51340 ATGTATCCGCACTAAGTCCCGAAGAGCATTCGT
66 ATGTATCCGAACTAAGTCCCGAAGAGCATTCGT
*
51373 GTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 GTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGAACTAAGTCCCGAAGAGCATTCGTGCTAGTG
51438 ATGTATCCGAACTAAGTCCCGAAGAGCATTCGT
66 ATGTATCCGAACTAAGTCCCGAAGAGCATTCGT
51471 G
1 G
51472 CTAGTGATGT
Statistics
Matches: 96, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
98 96 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (98 bp):
GTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGAACTAAGTCCCGAAGAGCATTCGTGCTAGTG
ATGTATCCGAACTAAGTCCCGAAGAGCATTCGT
Found at i:51483 original size:138 final size:138
Alignment explanation
Indices: 51235--51511 Score: 500
Period size: 138 Copynumber: 2.0 Consensus size: 138
51225 TCCGGGCTAA
* *
51235 GTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCTGAAGAGCATTCGTGCTAGTG
1 GTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTG
51300 ATGTATCCGAACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGCACTAAGTCCCGAAGA
66 ATGTATCCGAACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGCACTAAGTCCCGAAGA
51365 GCATTCGT
131 GCATTCGT
*
51373 GTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 GTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTG
** *
51438 ATGTATCCGAACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGA
66 ATGTATCCGAACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGCACTAAGTCCCGAAGA
51503 GCATTCGT
131 GCATTCGT
51511 G
1 G
51512 CTGGTGTTAT
Statistics
Matches: 133, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
138 133 1.00
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (138 bp):
GTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTG
ATGTATCCGAACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGCACTAAGTCCCGAAGA
GCATTCGT
Found at i:51502 original size:178 final size:178
Alignment explanation
Indices: 51195--51545 Score: 567
Period size: 178 Copynumber: 2.0 Consensus size: 178
51185 TCCGGACTAA
* *
51195 GTCCCGAAGAGCATTCGTGCTTGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 GTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTG
** *
51260 ATATATCCGGGCTAAGTCCTGAAGAGCATTCGTGCTAGTGATGTATCCGAACTAAGTCCCGAAGA
66 ATATATCCGAACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGAACTAAGTCCCGAAGA
*
51325 GCATTCGTGCTAGTGATGTATCCGCACTAAGTCCCGAAGAGCATTCGT
131 GCATTCGTGCTAGTGATATATCCGCACTAAGTCCCGAAGAGCATTCGT
51373 GTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 GTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTG
* ** *
51438 ATGTATCCGAACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGA
66 ATATATCCGAACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGAACTAAGTCCCGAAGA
* * ** *
51503 GCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
131 GCATTCGTGCTAGTGATATATCCGCACTAAGTCCCGAAGAGCA
51546 ATCATGCTGG
Statistics
Matches: 158, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
178 158 1.00
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (178 bp):
GTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTG
ATATATCCGAACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGAACTAAGTCCCGAAGA
GCATTCGTGCTAGTGATATATCCGCACTAAGTCCCGAAGAGCATTCGT
Found at i:51557 original size:40 final size:40
Alignment explanation
Indices: 51373--51545 Score: 274
Period size: 40 Copynumber: 4.3 Consensus size: 40
51363 GAGCATTCGT
51373 GTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAA
1 GTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAA
*
51413 GTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGAACTAA
1 GTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAA
*
51453 GTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAA
1 GTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAA
* * * * * *
51493 GTTCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAG
1 GTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAA
51533 GTCCCGAAGAGCA
1 GTCCCGAAGAGCA
51546 ATCATGCTGG
Statistics
Matches: 124, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 124 1.00
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
GTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAA
Found at i:55629 original size:47 final size:47
Alignment explanation
Indices: 55578--55725 Score: 206
Period size: 47 Copynumber: 3.1 Consensus size: 47
55568 TTTAGGATTT
55578 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * *
55625 AATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGTCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * * ** * *
55672 AATGTGGTGAATATGAACATGCATATATGTGGTAAATCTGAATGGCT
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
55719 AATGTGA
1 AATGTGA
55726 AATATGTATG
Statistics
Matches: 87, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 87 1.00
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.28
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
Found at i:55852 original size:98 final size:96
Alignment explanation
Indices: 55696--55879 Score: 280
Period size: 98 Copynumber: 1.9 Consensus size: 96
55686 GAACATGCAT
* * * * *
55696 ATATGTGGTAAATCTGAATGGCTAATGTGAAATATGTATGAGATATGTATCTGTGGTAAAGTCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
55761 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
55792 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGATATGTATATGTGGTAAAGC
*
55856 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
55880 GGCGATGTGC
Statistics
Matches: 79, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
95 1 0.01
96 25 0.32
97 2 0.03
98 51 0.65
ACGTcount: A:0.35, C:0.07, G:0.26, T:0.32
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:55895 original size:50 final size:48
Alignment explanation
Indices: 55695--55879 Score: 273
Period size: 48 Copynumber: 3.8 Consensus size: 48
55685 TGAACATGCA
* *
55695 TATATGTGGTAAATCTGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
55743 TATCTGTGGTAAAGTCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
55791 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
55841 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
55880 GGCGATGTGC
Statistics
Matches: 122, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
47 1 0.01
48 75 0.61
49 4 0.03
50 41 0.34
51 1 0.01
ACGTcount: A:0.35, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:56080 original size:37 final size:37
Alignment explanation
Indices: 56025--56128 Score: 190
Period size: 37 Copynumber: 2.8 Consensus size: 37
56015 GGAAATATAT
*
56025 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
56062 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
56099 TCCGGGTGAGACCCGATGACTACGTGTGGA
1 TCCGGGTAAGACCCGATGACTACGTGTGGA
56129 TGGCTACGTG
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.23, C:0.19, G:0.34, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:56135 original size:14 final size:14
Alignment explanation
Indices: 56113--56142 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
56103 GGTGAGACCC
56113 GATGACTACGTGTG
1 GATGACTACGTGTG
*
56127 GATGGCTACGTGTG
1 GATGACTACGTGTG
56141 GA
1 GA
56143 GATTATGTCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.13, G:0.40, T:0.27
Consensus pattern (14 bp):
GATGACTACGTGTG
Found at i:56162 original size:51 final size:51
Alignment explanation
Indices: 56076--56179 Score: 190
Period size: 51 Copynumber: 2.0 Consensus size: 51
56066 GGTAAGACCC
*
56076 GATGACTACGTGTGGAGATTATGTCCGGGTGAGACCCGATGACTACGTGTG
1 GATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTG
*
56127 GATGGCTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTG
1 GATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTG
56178 GA
1 GA
56180 GATTTTGTCC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.22, C:0.17, G:0.36, T:0.25
Consensus pattern (51 bp):
GATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTG
Found at i:56182 original size:37 final size:37
Alignment explanation
Indices: 56127--56234 Score: 180
Period size: 37 Copynumber: 2.9 Consensus size: 37
56117 ACTACGTGTG
*
56127 GATGGCTACGTGTGGAGATTATGTCCGGGTAAGACCC
1 GATGACTACGTGTGGAGATTATGTCCGGGTAAGACCC
*
56164 GATGACTACGTGTGGAGATTTTGTCCGGGTAAGACCC
1 GATGACTACGTGTGGAGATTATGTCCGGGTAAGACCC
* *
56201 GATAACTTCGTGTGGAGATTATGTCCGGGTAAGA
1 GATGACTACGTGTGGAGATTATGTCCGGGTAAGA
56235 TTTCGTAATA
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.23, C:0.17, G:0.33, T:0.27
Consensus pattern (37 bp):
GATGACTACGTGTGGAGATTATGTCCGGGTAAGACCC
Found at i:56193 original size:88 final size:88
Alignment explanation
Indices: 56039--56216 Score: 311
Period size: 88 Copynumber: 2.0 Consensus size: 88
56029 GGTAAGACCT
56039 GATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGG
1 GATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGG
* *
56104 GTGAGACCCGATGACTACGTGTG
66 GTAAGACCCGATAACTACGTGTG
* *
56127 GATGGCTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCGG
1 GATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGG
*
56192 GTAAGACCCGATAACTTCGTGTG
66 GTAAGACCCGATAACTACGTGTG
56215 GA
1 GA
56217 GATTATGTCC
Statistics
Matches: 85, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
88 85 1.00
ACGTcount: A:0.22, C:0.18, G:0.34, T:0.26
Consensus pattern (88 bp):
GATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGG
GTAAGACCCGATAACTACGTGTG
Found at i:61159 original size:28 final size:28
Alignment explanation
Indices: 61127--61196 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
61117 AATGAGATTG
*
61127 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
61155 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
61183 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
61197 GACTTACTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 37 0.95
29 2 0.05
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:69058 original size:28 final size:28
Alignment explanation
Indices: 69026--69095 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
69016 AATGAGATTG
69026 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
*
69054 GCACTAAGTGTGCGAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
69082 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
69096 GACTTACTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 34 0.87
29 4 0.10
30 1 0.03
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:76836 original size:28 final size:28
Alignment explanation
Indices: 76804--76873 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
76794 AATGAGATTG
* *
76804 GCACTAAGTGTGTGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
* *
76832 GCACTAAGTTTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
76860 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
76874 GACTTACTAT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
28 34 0.94
29 2 0.06
ACGTcount: A:0.27, C:0.11, G:0.26, T:0.36
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:84512 original size:24 final size:24
Alignment explanation
Indices: 84476--84526 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
84466 GAGTTCAAGC
*
84476 GAGCCATGTCAGGAAGCTCAT-AA
1 GAGCCATATCAGGAAGCTCATGAA
*
84499 GAGCCTATATCAGGACGCTCATGAA
1 GAGCC-ATATCAGGAAGCTCATGAA
84524 GAG
1 GAG
84527 TTGAGTTTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 5 0.21
24 14 0.58
25 5 0.21
ACGTcount: A:0.33, C:0.22, G:0.27, T:0.18
Consensus pattern (24 bp):
GAGCCATATCAGGAAGCTCATGAA
Found at i:84970 original size:21 final size:21
Alignment explanation
Indices: 84946--84985 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
84936 GAATTTAACA
*
84946 TCAATTTAATCCATTTCATAC
1 TCAATTTAATCCACTTCATAC
*
84967 TCAATTTAATTCACTTCAT
1 TCAATTTAATCCACTTCAT
84986 GTCCTAGGCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.45
Consensus pattern (21 bp):
TCAATTTAATCCACTTCATAC
Found at i:88223 original size:32 final size:32
Alignment explanation
Indices: 88187--88248 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
88177 TAAACCAGAA
*
88187 TATCATCAATTAATACCACTACAAACCTATTT
1 TATCATCAATAAATACCACTACAAACCTATTT
88219 TATCATCAATAAATACCACTACAAACCTAT
1 TATCATCAATAAATACCACTACAAACCTAT
88249 CTAGATACGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.44, C:0.26, G:0.00, T:0.31
Consensus pattern (32 bp):
TATCATCAATAAATACCACTACAAACCTATTT
Found at i:97446 original size:24 final size:24
Alignment explanation
Indices: 97417--97464 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
97407 TCATACGGTC
97417 ATGTCATGTCATATCATAGAATCA
1 ATGTCATGTCATATCATAGAATCA
97441 ATGTCATGTCATATCATAGAATCA
1 ATGTCATGTCATATCATAGAATCA
97465 TACATGTATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (24 bp):
ATGTCATGTCATATCATAGAATCA
Found at i:97568 original size:27 final size:27
Alignment explanation
Indices: 97536--97687 Score: 166
Period size: 27 Copynumber: 5.7 Consensus size: 27
97526 TACATCACAT
* *
97536 AGGGCAAAACAATCATCTTACCATATA
1 AGGGCAAAACAGTCATTTTACCATATA
* * *
97563 AGGGCAAAATAGTCATTTT-CCCTCATG
1 AGGGCAAAACAGTCATTTTACCAT-ATA
*
97590 AGGGCAAAACAGTCATTTTACCACAT-
1 AGGGCAAAACAGTCATTTTACCATATA
* *
97616 AGGGCAAAACAATCATTTTACCACATA
1 AGGGCAAAACAGTCATTTTACCATATA
* *
97643 AGGGCAAAATAGTCATTTTACC-TCATG
1 AGGGCAAAACAGTCATTTTACCAT-ATA
*
97670 AGGGCAAAATAGTCATTT
1 AGGGCAAAACAGTCATTT
97688 ATCAATCTGG
Statistics
Matches: 108, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
26 28 0.26
27 78 0.72
28 2 0.02
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.26
Consensus pattern (27 bp):
AGGGCAAAACAGTCATTTTACCATATA
Found at i:97628 original size:80 final size:80
Alignment explanation
Indices: 97531--97687 Score: 278
Period size: 80 Copynumber: 2.0 Consensus size: 80
97521 ATATATACAT
* *
97531 CACATAGGGCAAAACAATCATCTTACCATATAAGGGCAAAATAGTCATTTTCCCTCATGAGGGCA
1 CACATAGGGCAAAACAATCATCTTACCACATAAGGGCAAAATAGTCATTTTACCTCATGAGGGCA
97596 AAACAGTCATTTTAC
66 AAACAGTCATTTTAC
*
97611 CACATAGGGCAAAACAATCATTTTACCACATAAGGGCAAAATAGTCATTTTACCTCATGAGGGCA
1 CACATAGGGCAAAACAATCATCTTACCACATAAGGGCAAAATAGTCATTTTACCTCATGAGGGCA
*
97676 AAATAGTCATTT
66 AAACAGTCATTT
97688 ATCAATCTGG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 73 1.00
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.25
Consensus pattern (80 bp):
CACATAGGGCAAAACAATCATCTTACCACATAAGGGCAAAATAGTCATTTTACCTCATGAGGGCA
AAACAGTCATTTTAC
Found at i:97647 original size:53 final size:53
Alignment explanation
Indices: 97531--97687 Score: 199
Period size: 53 Copynumber: 2.9 Consensus size: 53
97521 ATATATACAT
* * * *
97531 CACATAGGGCAAAACAATCATCTTACCATATAAGGGCAAAATAGTCATTTTCC
1 CACATAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAATAGTCATTTTAC
* * *
97584 CTCATGAGGGCAAAACAGTCATTTTACCACAT-AGGGCAAAACAATCATTTTAC
1 CACAT-AGGGCAAAACAGTCATTTTACCACATAAGGGCAAAATAGTCATTTTAC
* * *
97637 CACATAAGGGCAAAATAGTCATTTTACCTCATGAGGGCAAAATAGTCATTT
1 CACAT-AGGGCAAAACAGTCATTTTACCACATAAGGGCAAAATAGTCATTT
97688 ATCAATCTGG
Statistics
Matches: 89, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
53 50 0.56
54 39 0.44
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.25
Consensus pattern (53 bp):
CACATAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAATAGTCATTTTAC
Found at i:97784 original size:16 final size:16
Alignment explanation
Indices: 97763--97796 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
97753 GTGCAACCTT
97763 AACAGTCAAACAGTAC
1 AACAGTCAAACAGTAC
97779 AACAGTCAAACAGTAC
1 AACAGTCAAACAGTAC
97795 AA
1 AA
97797 ATGGGCCCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.53, C:0.24, G:0.12, T:0.12
Consensus pattern (16 bp):
AACAGTCAAACAGTAC
Found at i:102075 original size:53 final size:54
Alignment explanation
Indices: 101892--102130 Score: 224
Period size: 55 Copynumber: 4.5 Consensus size: 54
101882 ATTAGGGTTT
* *
101892 AAGGATACCATGTAAGACCATGCCAAGGCATGGTGATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-CATTGGTAA-GTTTCATAAGGC
* * * * *
101947 AAGGATATCTTGTAAGACCATGTCAATACATGGCATTGATAAGTTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-ATAAGGC
* * * *
102002 AAAGG-TCCCACGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGC
* * * * *
102055 AAGGATACTATGTAAGACCATGTCGAGACATGGCAATGGTAAGCTTC--AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGC
* *
102104 AAGGATACCAAGTAAGACCATGACAAG
1 AAGGATACCATGTAAGACCATGCCAAG
102131 TCAATGGTAA
Statistics
Matches: 151, Mismatches: 28, Indels: 16
0.77 0.14 0.08
Matches are distributed among these distances:
49 23 0.15
52 6 0.04
53 42 0.28
54 13 0.09
55 63 0.42
56 4 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGC
Found at i:108608 original size:46 final size:46
Alignment explanation
Indices: 108541--108669 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
108531 TGTAACCCGC
* * *
108541 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
108587 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
108633 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
108670 TGCTCAACCA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:108688 original size:46 final size:45
Alignment explanation
Indices: 108546--108688 Score: 128
Period size: 46 Copynumber: 3.1 Consensus size: 45
108536 CCCGCCCATA
* ** * *
108546 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T
* *** *
108591 AAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTC-GCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T
*
108637 AAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCT
108684 AGTGA
1 AGTGA
108689 CATGTCACTT
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
46 79 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCT
Found at i:109785 original size:40 final size:40
Alignment explanation
Indices: 109741--109833 Score: 107
Period size: 40 Copynumber: 2.3 Consensus size: 40
109731 TCTTCAAAAT
* * *
109741 TTAGCCCGGATTTAGTAACTCGCACCAA-TGCCTTCGGGTC
1 TTAGCCCGGATATAGTAACTAGC-CCAATTGCCTTCGGGAC
* * * *
109781 TTAGCCCGAATATATTCACTAGCTCAATTGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTAGCCCAATTGCCTTCGGGAC
109821 TTAGCCCGGATAT
1 TTAGCCCGGATAT
109834 CATTCAAATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.07
40 41 0.93
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTAGCCCAATTGCCTTCGGGAC
Found at i:110160 original size:29 final size:29
Alignment explanation
Indices: 110121--110199 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
110111 CTTAATAATC
*
110121 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
110151 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
* *
110180 AGCCCACACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
110200 GTCTCACAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
28 3 0.07
29 37 0.86
30 3 0.07
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:110248 original size:43 final size:43
Alignment explanation
Indices: 110181--110283 Score: 179
Period size: 43 Copynumber: 2.4 Consensus size: 43
110171 TGCATTTCAA
* *
110181 GCCCACACACTTAGTGCCAGTCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
110224 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
110267 GCACGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
110284 TGAAAACCAA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.27, C:0.35, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:112180 original size:37 final size:38
Alignment explanation
Indices: 112139--112217 Score: 108
Period size: 38 Copynumber: 2.1 Consensus size: 38
112129 TATTACGAAA
* *
112139 TCTTACCCGGAC-ATAA-TCTCCACACGAAGTTATCGGG
1 TCTTACCCGGACAAAAATTC-CCACACGAAGTCATCGGG
*
112176 TCTTACCCGGACAAAAATTCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAAATTCCCACACGAAGTCATCGGG
112214 TCTT
1 TCTT
112218 TAGAGCTCAG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
37 12 0.32
38 23 0.62
39 2 0.05
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (38 bp):
TCTTACCCGGACAAAAATTCCCACACGAAGTCATCGGG
Found at i:112414 original size:47 final size:47
Alignment explanation
Indices: 112336--113334 Score: 1784
Period size: 47 Copynumber: 21.2 Consensus size: 47
112326 CCCTTCGGGA
* * * * * * **
112336 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*** *
112383 CCCGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
112430 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
112479 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
112526 CCTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
112574 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
112621 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
112668 CTTATTCA-ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
112715 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
112762 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
112809 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
112856 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
112903 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
112950 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
112997 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
113044 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
113091 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
113138 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
113185 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
113232 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
113279 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
113326 CTTATCACA
1 CTTATCACA
113335 ATTTAGAATT
Statistics
Matches: 926, Mismatches: 21, Indels: 10
0.97 0.02 0.01
Matches are distributed among these distances:
46 3 0.00
47 829 0.90
48 48 0.05
49 46 0.05
ACGTcount: A:0.31, C:0.30, G:0.07, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
Found at i:116250 original size:24 final size:24
Alignment explanation
Indices: 116199--116366 Score: 275
Period size: 24 Copynumber: 7.0 Consensus size: 24
116189 GCTTTATCAT
*
116199 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
116224 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
116248 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
116272 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
116296 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
116320 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
116344 ATCACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
116367 TCACTTCCTC
Statistics
Matches: 136, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
24 124 0.91
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:116442 original size:20 final size:20
Alignment explanation
Indices: 116417--116455 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
116407 TATGAATACA
116417 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
116437 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
116456 ACCATGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATG
Found at i:116461 original size:20 final size:20
Alignment explanation
Indices: 116418--116462 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
116408 ATGAATACAT
**
116418 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAC
116438 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
116458 CATGT
1 CATGT
116463 TTATCAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:116540 original size:24 final size:24
Alignment explanation
Indices: 116499--116545 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
116489 ATATATAAAC
* * *
116499 CCTAGGGGTATAATGGTCATTTTA
1 CCTAGGGGCAAAACGGTCATTTTA
116523 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
116546 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (24 bp):
CCTAGGGGCAAAACGGTCATTTTA
Found at i:118868 original size:53 final size:54
Alignment explanation
Indices: 118694--118900 Score: 233
Period size: 55 Copynumber: 3.8 Consensus size: 54
118684 TAAAGATGTC
*
118694 ATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGTAAGGATA-T
1 ATGTAAGACCATGCCAAGGCATGGC-ATTGGTAA-GTTTCATAAGGCAAGGATACT
* * * *
118748 CATGTAAGACCATGTCAAGGCATGGCATTGATAAGTTTCTATAAGGCAAAGG-TCCC
1 -ATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTC-ATAAGGC-AAGGATACT
* *
118804 ATGTAAGACCATGCCAAGGCATGACATTGGTGAG-TTCATAAGGCAAGGATACT
1 ATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTCATAAGGCAAGGATACT
* * * * *
118857 ATGTAAGACCATGTCAAGACATGGCAATGGAAAGTTTCAAAAGG
1 ATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTCATAAGG
118901 ATACCACGTA
Statistics
Matches: 128, Mismatches: 18, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
52 4 0.03
53 42 0.33
54 18 0.14
55 60 0.47
56 4 0.03
ACGTcount: A:0.35, C:0.16, G:0.26, T:0.24
Consensus pattern (54 bp):
ATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTCATAAGGCAAGGATACT
Found at i:118892 original size:108 final size:110
Alignment explanation
Indices: 118693--118894 Score: 297
Period size: 108 Copynumber: 1.9 Consensus size: 110
118683 TTAAAGATGT
* *
118693 CATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGTAAGGATATCATGTAAGAC
1 CATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGAC
* *
118758 CATGTCAAGGCATGGCATTGATAAGTTTCTATAAGGCAAAGGTCC
66 CATGTCAAGACATGGCATGGATAAGTTTCTATAAGGCAAAGGTCC
*
118803 CATGTAAGACCATGCCAAGGCATGAC-ATTGGTGA-G-TTCATAAGGCAAGGATA-CTATGTAAG
1 CATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTC-TAAGGCAAGGATATC-ATGTAAG
118864 ACCATGTCAAGACATGGCAATGGA-AAGTTTC
64 ACCATGTCAAGACATGGC-ATGGATAAGTTTC
118895 AAAAGGATAC
Statistics
Matches: 84, Mismatches: 5, Indels: 8
0.87 0.05 0.08
Matches are distributed among these distances:
107 4 0.05
108 44 0.52
109 11 0.13
110 25 0.30
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (110 bp):
CATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGAC
CATGTCAAGACATGGCATGGATAAGTTTCTATAAGGCAAAGGTCC
Found at i:134878 original size:21 final size:22
Alignment explanation
Indices: 134840--134880 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
134830 TTGTATCAGG
*
134840 GACTATATGATTGTATTTGAAT
1 GACTATATGATTGGATTTGAAT
*
134862 GACT-TATGTTTGGATTTGA
1 GACTATATGATTGGATTTGA
134881 TAAATTTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.27, C:0.05, G:0.22, T:0.46
Consensus pattern (22 bp):
GACTATATGATTGGATTTGAAT
Found at i:140209 original size:34 final size:34
Alignment explanation
Indices: 140166--140234 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
140156 CCTAATAGAG
*
140166 TTGCAGCAAATGATGCTGAGAGTGTAGCGCTTGC
1 TTGCAGCAAATGATGCTGAGAGTGTAGCGCCTGC
140200 TTGCAGCAAATGATGCTGAGAGTGTAGCGCCTGC
1 TTGCAGCAAATGATGCTGAGAGTGTAGCGCCTGC
140234 T
1 T
140235 CCCACGCAAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (34 bp):
TTGCAGCAAATGATGCTGAGAGTGTAGCGCCTGC
Found at i:145444 original size:40 final size:40
Alignment explanation
Indices: 145335--145554 Score: 214
Period size: 40 Copynumber: 5.5 Consensus size: 40
145325 ACCCAAGTAT
* * * * *
145335 CTTCGGGATTTAG-CCGAATATAACCACTTGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
* * ** *
145373 CTTCGAGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
* *
145413 CATCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
* * *
145453 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAATC-ACTAGCACAAATGC
* * * *
145493 CTTC-GGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAATCACTAGCACAAATGC
*
145533 CTTCGGGACTTAGCCCGAATAT
1 CTTCGGGACTTAGCCCGGATAT
145555 CATTCGAATA
Statistics
Matches: 145, Mismatches: 31, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
38 10 0.07
39 18 0.12
40 113 0.78
41 4 0.03
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
Found at i:153612 original size:48 final size:48
Alignment explanation
Indices: 153548--153732 Score: 264
Period size: 48 Copynumber: 3.8 Consensus size: 48
153538 TGAACATGCA
*
153548 TATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
153596 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * * *
153644 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATAAATGTGAGATGTG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTGAAATAT--GTATGAGATATG
* * *
153694 TATATTTGGTAAAGCCGGATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
153733 GGCGATGTGC
Statistics
Matches: 122, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
47 1 0.01
48 81 0.66
50 39 0.32
51 1 0.01
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:153665 original size:96 final size:97
Alignment explanation
Indices: 153549--153732 Score: 273
Period size: 98 Copynumber: 1.9 Consensus size: 97
153539 GAACATGCAT
* *
153549 ATATTTGGTAAAGCCGAATGG-CTAATGTGAAATAT-GTATGAGATATGTATATGTGGTAAAGCC
1 ATATGTGGTAAAGCCGAATGGTC-AATGTGAAATATAATATGAGATATGTATATGTGGTAAAGCC
153612 GAATGGCTAATGTGAAATATGTATGAGATATGC
65 GAATGGCTAATGTGAAATATGTATGAGATATGC
* * *
153645 ATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAAATGTGAGATGTGTATATTTGGTAAAGCC
1 ATATGTGGTAAAGCCGAATGGTCAATGTGAAATAT-AATATGAGATATGTATATGTGGTAAAGCC
* *
153710 GGATGGCTAGTGTGAAATATGTA
65 GAATGGCTAATGTGAAATATGTA
153733 GGCGATGTGC
Statistics
Matches: 78, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
96 32 0.41
97 1 0.01
98 45 0.58
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (97 bp):
ATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAATATGAGATATGTATATGTGGTAAAGCCG
AATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:153986 original size:37 final size:37
Alignment explanation
Indices: 153878--153986 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
153868 GGAAATATAT
*
153878 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
153915 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
153952 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
153987 CGTTTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:156942 original size:31 final size:30
Alignment explanation
Indices: 156868--156946 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 30
156858 TTTAACGGTT
156868 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGG-CGAAGCCTTTTCATAAATCATATC
*
156899 ACTAGGCTGAAGCCTTTTCATAAATCATATC
1 ACTGGGC-GAAGCCTTTTCATAAATCATATC
*
156930 ATTGGGTCGAAGCCTTT
1 ACTGGG-CGAAGCCTTT
156947 ACTGTAAATG
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
30 1 0.02
31 41 0.95
32 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.32
Consensus pattern (30 bp):
ACTGGGCGAAGCCTTTTCATAAATCATATC
Found at i:157017 original size:42 final size:42
Alignment explanation
Indices: 156970--157103 Score: 205
Period size: 42 Copynumber: 3.2 Consensus size: 42
156960 TGGCCTTTAG
*
156970 GCCCATTTCAATATCACGTGTAATGTTAATGGATGTATGCAA
1 GCCCATTTCAATATCACGTGTAATGTCAATGGATGTATGCAA
*
157012 GCCCATTTCAATGTCACGTGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACGTGTAATGTCAATGGATGTATGCAA
* * ** *
157054 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACGTGTAATGTCAATGGATGTATGCAA
157096 GCCCATTT
1 GCCCATTT
157104 GGGGACACTA
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 84 1.00
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (42 bp):
GCCCATTTCAATATCACGTGTAATGTCAATGGATGTATGCAA
Found at i:161701 original size:27 final size:26
Alignment explanation
Indices: 161666--161766 Score: 114
Period size: 27 Copynumber: 3.7 Consensus size: 26
161656 GGGCATATTC
* *
161666 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACC-TATAGGGGCT-TTACG
161693 GTCACTTTACCCTATAGGGGCTTTACG
1 GTCACTTTA-CCTATAGGGGCTTTACG
*
161720 GTCTCTTTAACCTATAGGGGCTTTACG
1 GTCACTTT-ACCTATAGGGGCTTTACG
*
161747 GTCTCTTTACCTAATAGGGG
1 GTCACTTTACCT-ATAGGGG
161767 TATTTTAGTC
Statistics
Matches: 67, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
26 4 0.06
27 59 0.88
28 4 0.06
ACGTcount: A:0.21, C:0.22, G:0.23, T:0.35
Consensus pattern (26 bp):
GTCACTTTACCTATAGGGGCTTTACG
Found at i:161993 original size:81 final size:80
Alignment explanation
Indices: 161899--162134 Score: 330
Period size: 81 Copynumber: 2.9 Consensus size: 80
161889 TTTGTACATC
* *
161899 AGGGCTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAG-GGTATTTT
*
161964 GGTAATTTTACAAACT
65 AGTAATTTTACAAACT
*
161980 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACTAGGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCA-GGGTATTTT
* *
162045 AGCAATTTTACAGACT
65 AGTAATTTTACAAACT
** * * **
162061 A-GGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACC-AGGGTATTTT
162125 AGTAATTTTA
65 AGTAATTTTA
162135 TAAATCGAGG
Statistics
Matches: 139, Mismatches: 14, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
80 63 0.45
81 75 0.54
82 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (80 bp):
AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAGGGTATTTTA
GTAATTTTACAAACT
Found at i:162138 original size:27 final size:27
Alignment explanation
Indices: 161788--162134 Score: 256
Period size: 27 Copynumber: 12.8 Consensus size: 27
161778 TTTCATCCTA
* * *
161788 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* **
161815 CAAGGGTATTTTAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *** * *
161842 CAATGGTATTTCCATAACTTTTAGAAAGT
1 CAAGGGTATTTTGGTAA-TTTTACAAA-C
*
161871 CAAGGGTATTTCT-GTAACTTTGTAC--AT
1 CAAGGGTATTT-TGGTAA-TTT-TACAAAC
*
161898 C-AGGGCTATTTTGGTAATTTTACAAAT
1 CAAGGG-TATTTTGGTAATTTTACAAAC
** * *
161925 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
161952 C-AGTGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTTGGTAATTTTACAAAC
* * *
161979 TAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
** *
162006 TGAGGGTATTTCGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * * * *
162033 TAGGGGTATTTTAGCAATTTTACAGA-
1 CAAGGGTATTTTGGTAATTTTACAAAC
* ** *
162059 CTAGGGTATTTTGGTAATTTTACTGAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* **
162086 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
162113 CAAGGGTATTTTAGTAATTTTA
1 CAAGGGTATTTTGGTAATTTTA
162135 TAAATCGAGG
Statistics
Matches: 256, Mismatches: 52, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
25 3 0.01
26 30 0.12
27 191 0.75
28 13 0.05
29 17 0.07
30 2 0.01
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:162155 original size:27 final size:27
Alignment explanation
Indices: 162125--162255 Score: 167
Period size: 27 Copynumber: 4.9 Consensus size: 27
162115 AGGGTATTTT
*
162125 AGTAATTTTATAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
* * * *
162152 AGTAACTCTGTAAATCAAGGGTAAAAT
1 AGTAATTCTATAAATCGAGGGTAAAAC
*
162179 AGTAATTCTATAAACCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
*
162206 -GATAATTCTGTAAATCGAGGGTAAAAC
1 AG-TAATTCTATAAATCGAGGGTAAAAC
162233 -GATAATTCTATAAATCGAGGGTA
1 AG-TAATTCTATAAATCGAGGGTA
162256 CTTTGATAAT
Statistics
Matches: 90, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.01
27 89 0.99
ACGTcount: A:0.43, C:0.11, G:0.20, T:0.27
Consensus pattern (27 bp):
AGTAATTCTATAAATCGAGGGTAAAAC
Found at i:162164 original size:54 final size:54
Alignment explanation
Indices: 162106--162255 Score: 178
Period size: 54 Copynumber: 2.8 Consensus size: 54
162096 TTGGTAATTT
* *** * *
162106 TGTAAACCAAGGGTATTTTAGTAATTTTATAAATCGAGGGTAAAAC-AGTAACTC
1 TGTAAATCAAGGGTAAAATAGTAATTCTATAAACCGAGGGTAAAACGA-TAACTC
*
162160 TGTAAATCAAGGGTAAAATAGTAATTCTATAAACCGAGGGTAAAACGATAATTC
1 TGTAAATCAAGGGTAAAATAGTAATTCTATAAACCGAGGGTAAAACGATAACTC
* * *
162214 TGTAAATCGAGGGTAAAA-CGATAATTCTATAAATCGAGGGTA
1 TGTAAATCAAGGGTAAAATAG-TAATTCTATAAACCGAGGGTA
162256 CTTTGATAAT
Statistics
Matches: 84, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
53 1 0.01
54 82 0.98
55 1 0.01
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.28
Consensus pattern (54 bp):
TGTAAATCAAGGGTAAAATAGTAATTCTATAAACCGAGGGTAAAACGATAACTC
Found at i:164328 original size:23 final size:23
Alignment explanation
Indices: 164302--164476 Score: 196
Period size: 23 Copynumber: 7.7 Consensus size: 23
164292 CAGAGTGCCA
* *
164302 CACTGTAATATAGCCGAAGCTAT
1 CACTGTAATGTAGCCGAAGCTAC
*
164325 CACTGTAACGTAGCCGAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
* *
164348 CACTGTATTGTAGCCAAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
* *
164371 CATTGTATTGTAGCCGAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
164394 CACTG-AGATGTAAG-CGAAGCTAC
1 CACTGTA-ATGT-AGCCGAAGCTAC
* *
164417 CACTGT-ATTTAGCCAAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
*
164439 CACTG-AGATGCAGCCGAAGCTAC
1 CACTGTA-ATGTAGCCGAAGCTAC
*
164462 CACTGTATTGTAGCC
1 CACTGTAATGTAGCC
164477 TATAGATTCC
Statistics
Matches: 128, Mismatches: 17, Indels: 14
0.81 0.11 0.09
Matches are distributed among these distances:
21 2 0.02
22 17 0.13
23 106 0.83
24 3 0.02
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (23 bp):
CACTGTAATGTAGCCGAAGCTAC
Found at i:175612 original size:47 final size:48
Alignment explanation
Indices: 175543--175672 Score: 178
Period size: 47 Copynumber: 2.8 Consensus size: 48
175533 GTAAGGTGTC
*
175543 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTC-AAGTT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAAGCT
* * *
175590 GATGCCATGTCCCAGACATGGTCTTACATTGAC-TATCATCTCGTAGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTA-CATCTCGAAGCT
*
175638 GATG-CATGTCCCACACAT-GTCTTACACTGGCTTAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTAC
175673 GTGTCGTGGC
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
46 14 0.19
47 52 0.71
48 7 0.10
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.30
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAAGCT
Found at i:175807 original size:47 final size:46
Alignment explanation
Indices: 175695--175821 Score: 159
Period size: 46 Copynumber: 2.7 Consensus size: 46
175685 TCCTCTCTGG
*
175695 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCAAAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCAAAAT
* * **
175741 GCC-ATGCCATATCCCAGACATGGTCTTACACTGGCTCTCAT-AATGT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCAAAAT
*
175787 GCCAGATGCATGTCCTAGACATGTCTTACACTAGC
1 GCC-GATGCATGTCCCAGACATGTCTTACACTAGC
175822 CAACATCAAC
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
45 3 0.04
46 34 0.49
47 29 0.42
48 3 0.04
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCAAAAT
Found at i:182826 original size:46 final size:45
Alignment explanation
Indices: 182699--182827 Score: 118
Period size: 46 Copynumber: 2.8 Consensus size: 45
182689 AAGTCGATGC
* * * * **
182699 CATGTCCCGAACATTGTCTTATACTGACTATCATCTCGTAGCTGATG
1 CATGTCCCAAACA-TGTCTTACACTTACT-TCGTCTCGTAGCCAATG
* *
182746 CATGTCCCAGACAAGTCTTACAC-TAGCTTACGTCTCG-AGGCCAATG
1 CATGTCCCAAACATGTCTTACACTTA-CTT-CGTCTCGTA-GCCAATG
182792 CATGTCCCAAACATGTCTTACACTTACTCTCGTCTC
1 CATGTCCCAAACATGTCTTACACTTACT-TCGTCTC
182828 AATGCTGATT
Statistics
Matches: 67, Mismatches: 10, Indels: 11
0.76 0.11 0.12
Matches are distributed among these distances:
45 3 0.04
46 50 0.75
47 14 0.21
ACGTcount: A:0.24, C:0.30, G:0.16, T:0.30
Consensus pattern (45 bp):
CATGTCCCAAACATGTCTTACACTTACTTCGTCTCGTAGCCAATG
Found at i:187025 original size:27 final size:26
Alignment explanation
Indices: 186977--187028 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
186967 GCGAGGCTGC
*
186977 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGACACCAGAA
* *
187003 CAGATATATGTGGCGAGGACACCAGA
1 CAGATAT-TGTGACGAAGACACCAGA
187029 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.37, C:0.19, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGACACCAGAA
Found at i:187635 original size:11 final size:10
Alignment explanation
Indices: 187607--187637 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
187597 CAGTGCTGAC
187607 CTTTCGGTCA
1 CTTTCGGTCA
187617 CTTTCGGTCA
1 CTTTCGGTCA
187627 CTCTTCGGTCA
1 CT-TTCGGTCA
187638 TTACGGCCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 12 0.60
11 8 0.40
ACGTcount: A:0.10, C:0.32, G:0.19, T:0.39
Consensus pattern (10 bp):
CTTTCGGTCA
Found at i:187901 original size:42 final size:42
Alignment explanation
Indices: 187850--187934 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
187840 CTTTCTGCCA
187850 AATATAGACTAGTCTCGATGCCCAACTATGCTAGCCTTTAAG
1 AATATAGACTAGTCTCGATGCCCAACTATGCTAGCCTTTAAG
* *
187892 AATATAGACTAGTCTTGATGCCCAACTGTGCTAGCCTTTAAG
1 AATATAGACTAGTCTCGATGCCCAACTATGCTAGCCTTTAAG
187934 A
1 A
187935 TCCTTAGTTG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (42 bp):
AATATAGACTAGTCTCGATGCCCAACTATGCTAGCCTTTAAG
Found at i:195193 original size:71 final size:67
Alignment explanation
Indices: 195116--195257 Score: 158
Period size: 67 Copynumber: 2.1 Consensus size: 67
195106 TCACCAGATA
* * * *
195116 CAGATATTCTGGCTAGGCCACCAGAACAGATGTATATATGTGGTGAAGCAACCAGATTGCAGCGA
1 CAGATATTCTGACGAAGCCACCAG-A-AGA-G-ATATATGTGGCGAAGCAACCAGATTGCAGCGA
195181 GGCTAC
62 GGCTAC
* * * * *
195187 CAGATATTGTGACGAAGTCACCAGAATAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCT
1 CAGATATTCTGACGAAGCCACCAGAAGAGATATATGTGGCGAAGCAACCAGATTGCAGCGAGGCT
*
195252 GC
66 AC
195254 CAGA
1 CAGA
195258 ACGCTTCCTC
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
67 38 0.62
68 1 0.02
69 2 0.03
70 1 0.02
71 19 0.31
ACGTcount: A:0.31, C:0.21, G:0.28, T:0.20
Consensus pattern (67 bp):
CAGATATTCTGACGAAGCCACCAGAAGAGATATATGTGGCGAAGCAACCAGATTGCAGCGAGGCT
AC
Found at i:195235 original size:27 final size:26
Alignment explanation
Indices: 195188--195238 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
195178 CGAGGCTACC
*
195188 AGATATTGTGACGAAGTCACCAGAAT
1 AGATATTGTGACGAAGCCACCAGAAT
* *
195214 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
195239 TTGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAT
Found at i:195396 original size:26 final size:27
Alignment explanation
Indices: 195360--195435 Score: 73
Period size: 26 Copynumber: 2.8 Consensus size: 27
195350 ATAAATTAAC
* *
195360 CCTAAGGGTATATTGGTCATTTT-GTA
1 CCTAGGGGTATATTGGTCATTTTCCTA
* *
195386 CCTAGGGGTATAATGGTAATTTTCCCTA
1 CCTAGGGGTATATTGGTCATTTT-CCTA
* * *
195414 CTTAGGGGTATTTTAGTCATTT
1 CCTAGGGGTATATTGGTCATTT
195436 CAACAATTTC
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
26 20 0.51
28 19 0.49
ACGTcount: A:0.22, C:0.13, G:0.22, T:0.42
Consensus pattern (27 bp):
CCTAGGGGTATATTGGTCATTTTCCTA
Found at i:197398 original size:40 final size:40
Alignment explanation
Indices: 197339--197424 Score: 118
Period size: 40 Copynumber: 2.1 Consensus size: 40
197329 TTCGCACAAG
* * * *
197339 GCCTTTGGGTCTTAACCTGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAACCTGGATATAGTCACTAGCACAAAT
* *
197379 GCCTTCGGGACTTAGCCTGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAACCTGGATATAGTCACTAGCACAAAT
197419 GCCTTC
1 GCCTTC
197425 AGATCTTAGT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.29
Consensus pattern (40 bp):
GCCTTCGGGACTTAACCTGGATATAGTCACTAGCACAAAT
Found at i:197433 original size:40 final size:41
Alignment explanation
Indices: 197348--197433 Score: 113
Period size: 40 Copynumber: 2.1 Consensus size: 41
197338 GGCCTTTGGG
* * * *
197348 TCTTAACCTGGATATGGTCACTAGCATAAATGCCTTCGGGA
1 TCTTAGCCTGGATATAGTCACTAGCACAAATGCCTTCGAGA
*
197389 -CTTAGCCTGGATATAGTCGCTAGCACAAATGCCTTC-AGA
1 TCTTAGCCTGGATATAGTCACTAGCACAAATGCCTTCGAGA
197428 TCTTAG
1 TCTTAG
197434 TTCGGATGTA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
39 2 0.05
40 37 0.95
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (41 bp):
TCTTAGCCTGGATATAGTCACTAGCACAAATGCCTTCGAGA
Found at i:197474 original size:41 final size:40
Alignment explanation
Indices: 197340--197483 Score: 112
Period size: 40 Copynumber: 3.6 Consensus size: 40
197330 TCGCACAAGG
* * * * * * **
197340 CCTTTGGGTCTTAACCTGGATATGGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCTGGATATAGTCGCTAGCACAAAAA
**
197380 CCTTCGGGACTTAGCCTGGATATAGTCGCTAGCACAAATG
1 CCTTCGGGACTTAGCCTGGATATAGTCGCTAGCACAAAAA
* * * *
197420 CCTTC-AGATCTTAG-TTCGGATGTAGTTGCTTAGCACAAAAA
1 CCTTCGGGA-CTTAGCCT-GGATATAGTCGC-TAGCACAAAAA
*
197461 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCTGGATAT
197484 CATTCGAGTA
Statistics
Matches: 83, Mismatches: 16, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
39 3 0.04
40 54 0.65
41 24 0.29
42 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCTGGATATAGTCGCTAGCACAAAAA
Found at i:201859 original size:40 final size:40
Alignment explanation
Indices: 201796--201958 Score: 222
Period size: 40 Copynumber: 4.1 Consensus size: 40
201786 TCTTCGGAAA
* *
201796 TTAG-CCGGATATAACAACCCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
*
201835 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGAGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
* * * *
201875 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATAT-AGCAACTCGCACAAATGCCTTCGGGTC
* *
201915 ATAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGATC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
201955 TTAG
1 TTAG
201959 TCTGGTTATC
Statistics
Matches: 106, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
39 6 0.06
40 98 0.92
41 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
Found at i:202526 original size:31 final size:29
Alignment explanation
Indices: 202484--202544 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 29
202474 TTAAAGTGCC
202484 ATATATATATATCTACATAAGTGCTTAGTAT
1 ATATATATATATCTACATAAGTG-TTA-TAT
*
202515 ATATATGTATATCTACATAAGTGTTATAT
1 ATATATATATATCTACATAAGTGTTATAT
202544 A
1 A
202545 CCATGTTTCC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 4 0.14
30 3 0.10
31 22 0.76
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.43
Consensus pattern (29 bp):
ATATATATATATCTACATAAGTGTTATAT
Found at i:204740 original size:37 final size:37
Alignment explanation
Indices: 204690--204768 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
204680 TTATTATGAA
* * *
204690 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
204727 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
204764 GTCTT
1 GTCTT
204769 TAGAGCTCAG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:205037 original size:47 final size:47
Alignment explanation
Indices: 204887--206299 Score: 2387
Period size: 47 Copynumber: 30.1 Consensus size: 47
204877 CCCTTCGGGA
* * * * * * * *
204887 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
204934 CCTGTCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
204980 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
205027 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
205074 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
205121 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
205168 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
205215 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
205262 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
205309 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
205356 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
205403 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
205450 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
205497 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
205544 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
205591 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
205638 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
205685 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
205732 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
205779 CTTATCACACATAGACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
205826 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
205873 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
205920 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
205967 CTTATCACCTATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
206014 CTTATCACACATAGACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
206061 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
206108 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
206155 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
206202 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
206249 CTTATCACACATATACACTTTCACATTCATCACATCGACCATTTGGC
1 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
206296 CTTA
1 CTTA
206300 CTATCATTTC
Statistics
Matches: 1331, Mismatches: 34, Indels: 2
0.97 0.02 0.00
Matches are distributed among these distances:
46 40 0.03
47 1291 0.97
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:215097 original size:40 final size:40
Alignment explanation
Indices: 215039--215206 Score: 205
Period size: 40 Copynumber: 4.2 Consensus size: 40
215029 TCTTCGGAAA
*
215039 TTAG-CCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
*
215078 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGAGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
* * * * *
215118 TTAACCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATAT-AGCAACTCGCACAAATGCCTTCGGGTC
* * * *
215158 ATAGACCGGATATAGCAACTCGAACAAATGCCTTCGGATC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
*
215198 TTAGTCCGG
1 TTAGCCCGG
215207 TTATCATCTG
Statistics
Matches: 107, Mismatches: 19, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
39 6 0.06
40 99 0.93
41 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
Found at i:215200 original size:80 final size:80
Alignment explanation
Indices: 215043--215193 Score: 232
Period size: 80 Copynumber: 1.9 Consensus size: 80
215033 CGGAAATTAG
* * * * *
215043 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATG
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGACATAGACCGGATATAGCAACTCGAACAAATG
215108 CCTTCGAGTCTTAAC
66 CCTTCGAGTCTTAAC
*
215123 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGACCGGATATAGCAACTCGAACAAAT
1 CCGGATATAA-CAACTAGCACAAATGCCTTCGGGACATAGACCGGATATAGCAACTCGAACAAAT
215187 GCCTTCG
65 GCCTTCG
215194 GATCTTAGTC
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
80 63 0.98
81 1 0.02
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (80 bp):
CCGGATATAACAACTAGCACAAATGCCTTCGGGACATAGACCGGATATAGCAACTCGAACAAATG
CCTTCGAGTCTTAAC
Found at i:229201 original size:30 final size:31
Alignment explanation
Indices: 229156--229218 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 31
229146 AAAATTTAAA
* *
229156 GACATGTTCAGAGGCCAAATTGCCTTGGCTT
1 GACATGTTCAGAGGCCAAATAGCCTTAGCTT
*
229187 GACA-GTTGAGAGGCCAAATAGCCTTAGCTT
1 GACATGTTCAGAGGCCAAATAGCCTTAGCTT
229217 GA
1 GA
229219 TAGTCGGTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 25 0.86
31 4 0.14
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (31 bp):
GACATGTTCAGAGGCCAAATAGCCTTAGCTT
Found at i:232582 original size:43 final size:42
Alignment explanation
Indices: 232535--232683 Score: 115
Period size: 43 Copynumber: 3.4 Consensus size: 42
232525 AAATCACCCA
* *
232535 CATTTAGCCTGCTAGGTTTTAAAAACCCGA-ATTCATTCACCGG
1 CATTTAGCCTGCTAGG--CTAAAAACCCGATATCCATTCACCGG
* * ** *
232578 CATTTCGCCTGCTAGGCTCAAGGCCCGATATCCTTTCACCGG
1 CATTTAGCCTGCTAGGCTAAAAACCCGATATCCATTCACCGG
* * *
232620 CATTATAGCCTGCTAGGCTCGATAGCCCGAATAGT--ATCTCACCGG
1 CATT-TAGCCTGCTAGGCT-AAAAACCCG-ATA-TCCAT-TCACCGG
232665 CATTGTAGCCTGCTAGGCT
1 CATT-TAGCCTGCTAGGCT
232684 CAAAGGCCCG
Statistics
Matches: 87, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
41 8 0.09
42 15 0.17
43 28 0.32
44 7 0.08
45 28 0.32
46 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.28
Consensus pattern (42 bp):
CATTTAGCCTGCTAGGCTAAAAACCCGATATCCATTCACCGG
Found at i:232695 original size:45 final size:44
Alignment explanation
Indices: 232535--232696 Score: 165
Period size: 45 Copynumber: 3.7 Consensus size: 44
232525 AAATCACCCA
* * **
232535 CATTTAGCCTGCTAGGTTTTAAAAACCCGAAT-TCAT-TCACCGG
1 CATTTAGCCTGCTAGG-CTCAAAGGCCCGAATATCATCTCACCGG
* * *
232578 CATTTCGCCTGCTAGGCTC-AAGGCCCG-ATATCCTTTCACCGG
1 CATTTAGCCTGCTAGGCTCAAAGGCCCGAATATCATCTCACCGG
*
232620 CATTATAGCCTGCTAGGCTCGATA-GCCCGAATAGT-ATCTCACCGG
1 CATT-TAGCCTGCTAGGCTC-AAAGGCCCGAATA-TCATCTCACCGG
232665 CATTGTAGCCTGCTAGGCTCAAAGGCCCGAAT
1 CATT-TAGCCTGCTAGGCTCAAAGGCCCGAAT
232697 TGTAATATCC
Statistics
Matches: 99, Mismatches: 12, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
40 2 0.02
41 9 0.09
42 12 0.12
43 29 0.29
44 7 0.07
45 39 0.39
46 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (44 bp):
CATTTAGCCTGCTAGGCTCAAAGGCCCGAATATCATCTCACCGG
Found at i:233577 original size:46 final size:46
Alignment explanation
Indices: 233525--233700 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
233515 TGGTTGAGCA
233525 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
233571 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
233616 CATCCGAACTCGTTGAGTTGAGTCCGAGTTGACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
233664 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
233701 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 62 0.58
47 27 0.25
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:233681 original size:93 final size:93
Alignment explanation
Indices: 233522--233692 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
233512 GGATGGTTGA
* **
233522 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
233587 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
233615 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTGACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
233680 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
233693 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:241269 original size:38 final size:38
Alignment explanation
Indices: 241227--241299 Score: 128
Period size: 38 Copynumber: 1.9 Consensus size: 38
241217 GAACCAGAAA
*
241227 TAGGATGTTCAGTAACAAACCTCTTTGAGTAACGCAGG
1 TAGGATGTTCAGTAACAAACCTCTTTGAATAACGCAGG
*
241265 TAGGATGTTCAGTAACAAACCTTTTTGAATAACGC
1 TAGGATGTTCAGTAACAAACCTCTTTGAATAACGC
241300 TGGAAACCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.29
Consensus pattern (38 bp):
TAGGATGTTCAGTAACAAACCTCTTTGAATAACGCAGG
Found at i:243347 original size:40 final size:40
Alignment explanation
Indices: 243264--243526 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
243254 TTGAATGCTG
* * * * * *
243264 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
243304 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
243344 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
243384 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
243424 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
243464 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
243503 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
243527 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:243546 original size:79 final size:80
Alignment explanation
Indices: 243303--243561 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
243293 AAGTGAATAT
* * * * * *
243303 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
243367 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
243383 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
243448 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
243463 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
243527 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
243542 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
243562 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:251419 original size:39 final size:40
Alignment explanation
Indices: 251215--251437 Score: 245
Period size: 40 Copynumber: 5.6 Consensus size: 40
251205 TTGAATGCTG
* * * * * *
251215 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
* * * *
251255 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
251295 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
251335 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
251375 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
251414 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
251438 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:251457 original size:79 final size:80
Alignment explanation
Indices: 251290--251472 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
251280 GTGCGAGATA
* * *
251290 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
251355 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
251370 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
251434 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
251449 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
251473 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:254147 original size:33 final size:33
Alignment explanation
Indices: 254103--254174 Score: 117
Period size: 33 Copynumber: 2.2 Consensus size: 33
254093 CTGTTGGGAC
* * *
254103 AGTAAATATAGAACAAAGATAGTCCACTAGGAT
1 AGTAAACATAGAAAAAAGATAGTCCACCAGGAT
254136 AGTAAACATAGAAAAAAGATAGTCCACCAGGAT
1 AGTAAACATAGAAAAAAGATAGTCCACCAGGAT
254169 AGTAAA
1 AGTAAA
254175 GATGAGTAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.51, C:0.12, G:0.18, T:0.18
Consensus pattern (33 bp):
AGTAAACATAGAAAAAAGATAGTCCACCAGGAT
Found at i:254190 original size:27 final size:28
Alignment explanation
Indices: 254160--254222 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 28
254150 AAAGATAGTC
* **
254160 CACCAGGATAGTAAAGATGA-GTAAGTT
1 CACCAGGATAGTAAACAAAAGGTAAGTT
* *
254187 CACCAGAATATTAAACAAAAGGTAAGTT
1 CACCAGGATAGTAAACAAAAGGTAAGTT
254215 CACCAGGA
1 CACCAGGA
254223 CATGAGAAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
27 15 0.52
28 14 0.48
ACGTcount: A:0.44, C:0.16, G:0.21, T:0.19
Consensus pattern (28 bp):
CACCAGGATAGTAAACAAAAGGTAAGTT
Found at i:264969 original size:43 final size:43
Alignment explanation
Indices: 264908--265030 Score: 151
Period size: 43 Copynumber: 2.9 Consensus size: 43
264898 TAGTACATGA
* ** *
264908 TTCGTGTAAGACCATGTCTGGGACATTGGCATC-ATTCTGTGGT
1 TTCGTGCAAGACCATGTCTGGGACATTGGCATCGA-TAAGTGAT
264951 TTCGTGCAAGACCATGTCTGGGACATTGGCATCGATAAGTGAT
1 TTCGTGCAAGACCATGTCTGGGACATTGGCATCGATAAGTGAT
* * *
264994 TACATGTC-AGACCATGTCTGGGACATTAGCATCGATA
1 TTCGTG-CAAGACCATGTCTGGGACATTGGCATCGATA
265031 TATGATTCAT
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
43 69 0.97
44 2 0.03
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (43 bp):
TTCGTGCAAGACCATGTCTGGGACATTGGCATCGATAAGTGAT
Found at i:266511 original size:27 final size:27
Alignment explanation
Indices: 266481--266542 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
266471 GGGGTATATT
*
266481 AGTCATTTTACCTCAGAGGGTTATAAC
1 AGTCATTTTACCTCAGAGGGCTATAAC
* *
266508 AGTCATTTTACTTCATAGGGCTATAAC
1 AGTCATTTTACCTCAGAGGGCTATAAC
*
266535 AATCATTT
1 AGTCATTT
266543 CATCAATTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.37
Consensus pattern (27 bp):
AGTCATTTTACCTCAGAGGGCTATAAC
Found at i:268545 original size:32 final size:32
Alignment explanation
Indices: 268509--268578 Score: 86
Period size: 32 Copynumber: 2.2 Consensus size: 32
268499 CACGGCTTAC
* ** * *
268509 AGCCATCAGTAGTGGCAATTTAATCGGCACAA
1 AGCCATCAATAGCAGCAATATAATCCGCACAA
*
268541 AGCCATCAATAGCAGCAATATAATCCGCACAC
1 AGCCATCAATAGCAGCAATATAATCCGCACAA
268573 AGCCAT
1 AGCCAT
268579 GGGTAAATAT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.37, C:0.27, G:0.17, T:0.19
Consensus pattern (32 bp):
AGCCATCAATAGCAGCAATATAATCCGCACAA
Found at i:269089 original size:27 final size:26
Alignment explanation
Indices: 269058--269402 Score: 269
Period size: 27 Copynumber: 12.9 Consensus size: 26
269048 TGTACTACAA
269058 GGGTATTTCAGTAATTTTACAAATCG
1 GGGTATTTCAGTAATTTTACAAATCG
*
269084 GTGGTATTTCAGTAATTTTACAAATTGG
1 G-GGTATTTCAGTAATTTTACAAA-TCG
** *
269112 GGGTATTTTGGTAATTTTA-AAATTTG
1 GGGTATTTCAGTAATTTTACAAA-TCG
269138 AGGGTATTTC-GATAATTTTACAAA-CTG
1 -GGGTATTTCAG-TAATTTTACAAATC-G
* *
269165 GGGTATTTCGGTAATTTTA-AAATCCC
1 GGGTATTTCAGTAATTTTACAAAT-CG
** *
269191 TCGTATTT-TGATAATTTTACAAATCGG
1 GGGTATTTCAG-TAATTTTACAAATC-G
*
269218 GGGTATTTCTA-TAATTTTACAAATTGG
1 GGGTATTTC-AGTAATTTTACAAA-TCG
* *
269245 GGGTGTTTC-GATAATTTTACAATTCG
1 GGGTATTTCAG-TAATTTTACAAATCG
* *
269271 AGGGTATTTCAATAATTTTAAAAATCG
1 -GGGTATTTCAGTAATTTTACAAATCG
*
269298 GGAGTATTTCATTAATTTTAC-AATCCG
1 GG-GTATTTCAGTAATTTTACAAAT-CG
269325 AGGGTATTTC-GATAATTTTACAAATCG
1 -GGGTATTTCAG-TAATTTTACAAATCG
** * *
269352 AGGGTATTTTGGTAATTTTACAATTTG
1 -GGGTATTTCAGTAATTTTACAAATCG
269379 AGGGTATTTC-GATAATTTTACAAA
1 -GGGTATTTCAG-TAATTTTACAAA
269403 CCGAGTGTCT
Statistics
Matches: 263, Mismatches: 30, Indels: 51
0.76 0.09 0.15
Matches are distributed among these distances:
25 4 0.02
26 48 0.18
27 198 0.75
28 13 0.05
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.41
Consensus pattern (26 bp):
GGGTATTTCAGTAATTTTACAAATCG
Found at i:269116 original size:54 final size:53
Alignment explanation
Indices: 269057--269402 Score: 316
Period size: 54 Copynumber: 6.5 Consensus size: 53
269047 TTGTACTACA
269057 AGGGTATTTCAGTAATTTTACAAATCGGTGGTATTTC-AGTAATTTTACAAATTG
1 AGGGTATTTCAGTAATTTTACAAATCGG-GGTATTTCGA-TAATTTTACAAATTG
* ** * *
269111 GGGGTATTTTGGTAATTTTA-AAATTTGAGGGTATTTCGATAATTTTACAAACTG
1 AGGGTATTTCAGTAATTTTACAAA-TCG-GGGTATTTCGATAATTTTACAAATTG
* *** * *
269165 -GGGTATTTCGGTAATTTTA-AAATCCCTCGTATTTTGATAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAAT-CGGGGTATTTCGATAATTTTACAAATTG
* * *
269217 GGGGTATTTCTA-TAATTTTACAAATTGGGGGTGTTTCGATAATTTTAC-AATTCG
1 AGGGTATTTC-AGTAATTTTACAAA-TCGGGGTATTTCGATAATTTTACAAATT-G
* * *
269271 AGGGTATTTCAATAATTTTAAAAATCGGGAGTATTTC-ATTAATTTTAC-AATCCG
1 AGGGTATTTCAGTAATTTTACAAATCGGG-GTATTTCGA-TAATTTTACAAAT-TG
* * *
269325 AGGGTATTTC-GATAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAATTTG
1 AGGGTATTTCAG-TAATTTTACAAATCG-GGGTATTTCGATAATTTTACAAATTG
269379 AGGGTATTTC-GATAATTTTACAAA
1 AGGGTATTTCAG-TAATTTTACAAA
269403 CCGAGTGTCT
Statistics
Matches: 243, Mismatches: 32, Indels: 34
0.79 0.10 0.11
Matches are distributed among these distances:
52 22 0.09
53 50 0.21
54 164 0.67
55 7 0.03
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (53 bp):
AGGGTATTTCAGTAATTTTACAAATCGGGGTATTTCGATAATTTTACAAATTG
Found at i:269407 original size:81 final size:79
Alignment explanation
Indices: 269057--269405 Score: 362
Period size: 81 Copynumber: 4.3 Consensus size: 79
269047 TTGTACTACA
* * *
269057 AGGGTATTTCAGTAATTTTACAAATCGGTGGTATTTC-AGTAATTTTACAAATTGGGGGTATTTT
1 AGGGTATTTCA-TAATTTTACAAACCGG-GGTATTTCGA-TAATTTTACAAATCGAGGGTATTTT
* * *
269121 GGTAATTTTAAAATTTG
63 GATAATTTTAAAAATCG
* * ****
269138 AGGGTATTTCGATAATTTTACAAACTGGGGTATTTCGGTAATTTTA-AAATCCCTCGTATTTTGA
1 AGGGTATTTC-ATAATTTTACAAACCGGGGTATTTCGATAATTTTACAAATCGAGGGTATTTTGA
*
269202 TAATTTTACAAATCG
65 TAATTTTAAAAATCG
* ** * * **
269217 GGGGTATTTCTATAATTTTACAAATTGGGGGTGTTTCGATAATTTTACAATTCGAGGGTATTTCA
1 AGGGTATTTC-ATAATTTTACAAA-CCGGGGTATTTCGATAATTTTACAAATCGAGGGTATTTTG
269282 ATAATTTTAAAAATCG
64 ATAATTTTAAAAATCG
*
269298 -GGAGTATTTCATTAATTTTACAATCCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTT
1 AGG-GTATTTCA-TAATTTTACAAACCG-GGGTATTTCGATAATTTTACAAATCGAGGGTATTTT
* * * *
269362 GGTAATTTTACAATTTG
63 GATAATTTTAAAAATCG
269379 AGGGTATTTCGATAATTTTACAAACCG
1 AGGGTATTTC-ATAATTTTACAAACCG
269406 AGTGTCTTAA
Statistics
Matches: 221, Mismatches: 38, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
79 46 0.21
80 38 0.17
81 133 0.60
82 4 0.02
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.41
Consensus pattern (79 bp):
AGGGTATTTCATAATTTTACAAACCGGGGTATTTCGATAATTTTACAAATCGAGGGTATTTTGAT
AATTTTAAAAATCG
Found at i:271573 original size:56 final size:56
Alignment explanation
Indices: 271445--271565 Score: 224
Period size: 56 Copynumber: 2.2 Consensus size: 56
271435 TCCCAGATAG
271445 GGTCTTACTCACACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACAT
1 GGTCTTACTCACACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACAT
**
271501 GGTCTTACTCACACACATATATCGAAGTCACATATCGATGCCAACGTATAAAATGT
1 GGTCTTACTCACACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACAT
271557 GGTCTTACT
1 GGTCTTACT
271566 TGCACACAAA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.27
Consensus pattern (56 bp):
GGTCTTACTCACACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACAT
Done.