Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold4858.1
Parameters: 2 7 7 80 10 50 1000
Length:  42425

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
616--756
76
1.9
76
86
3
203
26
18
21
33
1.96
2136--2193
25
2.3
25
96
0
107
31
18
17
32
1.94
3512--3552
11
3.7
11
96
0
73
78
4
7
9
1.10
3534--3568
14
2.5
14
85
0
52
77
0
5
17
0.96
7112--7165
20
2.7
20
82
0
63
24
20
18
37
1.94
7112--7185
30
2.5
30
86
8
98
21
20
18
39
1.93
7112--7176
20
3.2
20
71
16
53
23
21
16
38
1.93
10612--10694
21
4.0
21
75
10
73
67
0
22
9
1.20
10707--10763
28
2.0
30
83
10
75
59
3
21
15
1.51
10647--10740
33
2.8
34
79
9
104
60
0
22
17
1.36
10766--10805
12
3.3
12
82
0
53
60
2
22
15
1.47
19267--19420
77
2.0
77
100
0
308
44
24
5
25
1.75
20689--21286
299
2.0
299
98
0
1153
39
19
16
24
1.92
25959--26002
22
2.0
22
95
0
79
25
36
4
34
1.76
26238--26347
57
1.9
56
92
1
184
41
16
11
30
1.84
26652--26776
61
2.0
63
96
3
236
32
15
14
38
1.87
29156--29349
97
2.0
97
95
0
352
35
14
21
27
1.93
29876--29913
10
3.8
10
83
13
51
21
18
31
28
1.97
29853--29913
20
3.0
20
83
9
63
27
14
27
29
1.95
29877--29914
20
1.9
20
94
0
67
18
18
34
28
1.95
32026--32070
20
2.3
19
84
7
54
24
33
11
31
1.90
37022--37275
128
2.0
128
99
0
499
46
11
15
25
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37925--38498
287
2.0
287
100
0
1148
37
19
14
27
1.91

Tables:   1

The End!