Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 100 of 310
Found at i:32248839 original size:8 final size:8
Alignment explanation
Indices: 32248822--32248853 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
32248812 TTCAATCACC
*
32248822 AAAACCAT
1 AAAACAAT
32248830 AAAACAAT
1 AAAACAAT
32248838 AAAACAAT
1 AAAACAAT
32248846 AAAACAAT
1 AAAACAAT
32248854 CTGTTTAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.72, C:0.16, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAACAAT
Found at i:32250310 original size:32 final size:31
Alignment explanation
Indices: 32250273--32250344 Score: 78
Period size: 32 Copynumber: 2.3 Consensus size: 31
32250263 ATTTTTTAAA
32250273 AATATAATTATATAA-TT-AAAAATATATATAAT
1 AATATAATTATA-AATTTCAAAAA-A-ATATAAT
*
32250305 AATATAATAATAAATTTTCAAAAAAATATAAT
1 AATATAATTATAAA-TTTCAAAAAAATATAAT
32250337 AATA-AATT
1 AATATAATT
32250345 TAATTTTTAG
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
31 5 0.14
32 22 0.63
33 3 0.09
34 5 0.14
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (31 bp):
AATATAATTATAAATTTCAAAAAAATATAAT
Found at i:32250319 original size:24 final size:23
Alignment explanation
Indices: 32250274--32250344 Score: 72
Period size: 24 Copynumber: 3.0 Consensus size: 23
32250264 TTTTTTAAAA
*
32250274 ATATAATTATATAATTAA-AAATAT
1 ATATAATAATATAA-TAATAAAT-T
32250298 ATATAATAATATAATAATAAATT
1 ATATAATAATATAATAATAAATT
* * *
32250321 TTCAAAAAAATATAATAATAAATT
1 AT-ATAATAATATAATAATAAATT
32250345 TAATTTTTAG
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
23 5 0.12
24 36 0.88
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (23 bp):
ATATAATAATATAATAATAAATT
Found at i:32250343 original size:12 final size:12
Alignment explanation
Indices: 32250282--32250348 Score: 52
Period size: 12 Copynumber: 5.6 Consensus size: 12
32250272 AAATATAATT
32250282 ATATAATTAA-AA
1 ATATAA-TAATAA
32250294 ATATATATAAT-A
1 ATATA-ATAATAA
32250306 ATATAATAATAA
1 ATATAATAATAA
*
32250318 ATTTTCAA-AA-AA
1 A-TAT-AATAATAA
32250330 ATATAATAATAA
1 ATATAATAATAA
*
32250342 ATTTAAT
1 ATATAAT
32250349 TTTTAGATTA
Statistics
Matches: 45, Mismatches: 3, Indels: 14
0.73 0.05 0.23
Matches are distributed among these distances:
10 2 0.04
11 9 0.20
12 27 0.60
13 5 0.11
14 2 0.04
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.37
Consensus pattern (12 bp):
ATATAATAATAA
Found at i:32250947 original size:20 final size:20
Alignment explanation
Indices: 32250922--32250960 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
32250912 TCAGACTTGA
32250922 TTCGACGAGTTTTTAAGTTT
1 TTCGACGAGTTTTTAAGTTT
*
32250942 TTCGACGAGTTTTTTAGTT
1 TTCGACGAGTTTTTAAGTT
32250961 AAAGTCTCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.18, C:0.10, G:0.21, T:0.51
Consensus pattern (20 bp):
TTCGACGAGTTTTTAAGTTT
Found at i:32252664 original size:44 final size:44
Alignment explanation
Indices: 32252615--32252714 Score: 146
Period size: 44 Copynumber: 2.3 Consensus size: 44
32252605 ATTGAGATGA
*
32252615 CACTAAGTGTGTGAAATTATTATAGCTTCAGATAATCTTTAAAG
1 CACTAAGTGTGCGAAATTATTATAGCTTCAGATAATCTTTAAAG
* * * * *
32252659 TACTAATTGTGCGAAATTATTATAGCTTCGGCTAATTTTTAAAG
1 CACTAAGTGTGCGAAATTATTATAGCTTCAGATAATCTTTAAAG
32252703 CACTAAGTGTGC
1 CACTAAGTGTGC
32252715 AGATGTTAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 48 1.00
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (44 bp):
CACTAAGTGTGCGAAATTATTATAGCTTCAGATAATCTTTAAAG
Found at i:32254287 original size:11 final size:12
Alignment explanation
Indices: 32254257--32254289 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
32254247 GTCACAAGTG
32254257 AATTAATTCACA
1 AATTAATTCACA
*
32254269 AATGAATTCA-A
1 AATTAATTCACA
32254280 AATTAATTCA
1 AATTAATTCA
32254290 TCTTGGGTCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.52, C:0.12, G:0.03, T:0.33
Consensus pattern (12 bp):
AATTAATTCACA
Found at i:32256083 original size:14 final size:14
Alignment explanation
Indices: 32256066--32256126 Score: 50
Period size: 14 Copynumber: 4.4 Consensus size: 14
32256056 TTGAGAATTT
32256066 AGAATAAAAAATCG
1 AGAATAAAAAATCG
** * *
32256080 AGAATTGACAATTG
1 AGAATAAAAAATCG
*
32256094 AAAATAAAAAATCG
1 AGAATAAAAAATCG
* * *
32256108 AGAACAAGAAATTG
1 AGAATAAAAAATCG
32256122 AGAAT
1 AGAAT
32256127 CAAATTGTGA
Statistics
Matches: 33, Mismatches: 14, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
14 33 1.00
ACGTcount: A:0.59, C:0.07, G:0.16, T:0.18
Consensus pattern (14 bp):
AGAATAAAAAATCG
Found at i:32256085 original size:28 final size:28
Alignment explanation
Indices: 32256053--32256111 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
32256043 TTTTAATTTG
* * *
32256053 GAATTGAGAATTTAGAATAAAAAATCGA
1 GAATTGACAATTGAAAATAAAAAATCGA
32256081 GAATTGACAATTGAAAATAAAAAATCGA
1 GAATTGACAATTGAAAATAAAAAATCGA
32256109 GAA
1 GAA
32256112 CAAGAAATTG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.56, C:0.05, G:0.17, T:0.22
Consensus pattern (28 bp):
GAATTGACAATTGAAAATAAAAAATCGA
Found at i:32256120 original size:28 final size:28
Alignment explanation
Indices: 32256068--32256122 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
32256058 GAGAATTTAG
**
32256068 AATAAAAAATCGAGAATTGACAATTGAA
1 AATAAAAAATCGAGAAAAGACAATTGAA
32256096 AATAAAAAATCGAGAACAAGA-AATTGA
1 AATAAAAAATCGAGAA-AAGACAATTGA
32256123 GAATCAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 22 0.92
29 2 0.08
ACGTcount: A:0.60, C:0.07, G:0.15, T:0.18
Consensus pattern (28 bp):
AATAAAAAATCGAGAAAAGACAATTGAA
Found at i:32258016 original size:21 final size:24
Alignment explanation
Indices: 32257991--32258045 Score: 71
Period size: 21 Copynumber: 2.4 Consensus size: 24
32257981 AAATAGATCA
32257991 AAATAAAAAAAAAT-G-A-AATCG
1 AAATAAAAAAAAATAGAAGAATCG
*
32258012 AAATACAAAAAAATCAGAAGAATCG
1 AAATAAAAAAAAAT-AGAAGAATCG
32258037 AAATAAAAA
1 AAATAAAAA
32258046 TATCACAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 13 0.46
23 1 0.04
24 1 0.04
25 13 0.46
ACGTcount: A:0.71, C:0.07, G:0.09, T:0.13
Consensus pattern (24 bp):
AAATAAAAAAAAATAGAAGAATCG
Found at i:32259297 original size:106 final size:105
Alignment explanation
Indices: 32259109--32259313 Score: 275
Period size: 106 Copynumber: 1.9 Consensus size: 105
32259099 TATTCTTATT
* * * * *
32259109 TTTAGGAATTTGAGACATCGTGCCCTAACTTACTAGGCATGATTTTAGTCCTGATTAACTTGAAA
1 TTTAGGAATTTGAGACATCGTACACTAACTTACGAGACATGATTTTAGTCCCGATTAACTTGAAA
* *
32259174 TACAAAGACATTCTTCATAACATTTTATTTAATTTCTTAA
66 TACAAAGACATTCTTCATAAAATTTGATTTAATTTCTTAA
* **
32259214 TTTAGGGAATTTGAGACATCGTACACTAACTTACGAGATATGATTTTCTTCCCGATTAACTTGAA
1 TTTA-GGAATTTGAGACATCGTACACTAACTTACGAGACATGATTTTAGTCCCGATTAACTTGAA
* * * *
32259279 ATACGAAGGCGTTTTTCATAAAATTTGATTTAATT
65 ATACAAAGACATTCTTCATAAAATTTGATTTAATT
32259314 AGCGATATTT
Statistics
Matches: 85, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
105 4 0.05
106 81 0.95
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.39
Consensus pattern (105 bp):
TTTAGGAATTTGAGACATCGTACACTAACTTACGAGACATGATTTTAGTCCCGATTAACTTGAAA
TACAAAGACATTCTTCATAAAATTTGATTTAATTTCTTAA
Found at i:32259810 original size:22 final size:24
Alignment explanation
Indices: 32259758--32259812 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 24
32259748 TAATAGATGC
**
32259758 TTATTTAATATATACATGTAAAAA
1 TTATTTAATATATACAAATAAAAA
*
32259782 -TAATTAA-ATATA-AAATAAAAA
1 TTATTTAATATATACAAATAAAAA
32259803 TTATTTAATA
1 TTATTTAATA
32259813 AAATTTCAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
21 7 0.28
22 11 0.44
23 7 0.28
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (24 bp):
TTATTTAATATATACAAATAAAAA
Found at i:32259865 original size:15 final size:16
Alignment explanation
Indices: 32259842--32259876 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
32259832 GAAAATGAGT
*
32259842 AAAAGTTTTCTAA-TA
1 AAAAATTTTCTAACTA
32259857 AAAAATTTTCTAACTA
1 AAAAATTTTCTAACTA
32259873 AAAA
1 AAAA
32259877 GTTTCCCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.54, C:0.09, G:0.03, T:0.34
Consensus pattern (16 bp):
AAAAATTTTCTAACTA
Found at i:32260181 original size:19 final size:20
Alignment explanation
Indices: 32260137--32260183 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
32260127 TTAATTAACT
*
32260137 TTTTAAAACTTAAAAATTAC
1 TTTTAAAAATTAAAAATTAC
*
32260157 TTTTAAAAATTTAAAATTA-
1 TTTTAAAAATTAAAAATTAC
32260176 TTTTAAAA
1 TTTTAAAA
32260184 TAATAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 8 0.32
20 17 0.68
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (20 bp):
TTTTAAAAATTAAAAATTAC
Found at i:32260192 original size:20 final size:20
Alignment explanation
Indices: 32260137--32260192 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
32260127 TTAATTAACT
**
32260137 TTTTAAAACTTAAAAATTAC
1 TTTTAAAAAATAAAAATTAC
* *
32260157 TTTTAAAAATTTAAAATTA-
1 TTTTAAAAAATAAAAATTAC
32260176 TTTTAAAATAATAAAAA
1 TTTTAAAA-AATAAAAA
32260193 AATATACTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 8 0.26
20 23 0.74
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (20 bp):
TTTTAAAAAATAAAAATTAC
Found at i:32264587 original size:37 final size:37
Alignment explanation
Indices: 32264537--32264615 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
32264527 TTATTACGAA
* * *
32264537 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
32264574 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
32264611 GTCTT
1 GTCTT
32264616 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:32264812 original size:47 final size:47
Alignment explanation
Indices: 32264734--32267905 Score: 6227
Period size: 47 Copynumber: 67.4 Consensus size: 47
32264724 CCCTTCGGGA
* * * * *
32264734 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32264781 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32264828 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32264875 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32264922 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32264969 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32265016 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32265063 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32265110 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32265157 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32265204 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32265251 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32265298 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32265345 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32265392 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32265439 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32265486 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32265533 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32265580 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32265627 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32265674 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32265721 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32265768 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32265815 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32265862 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32265909 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32265956 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32266003 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32266050 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32266097 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32266144 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32266191 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32266238 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32266285 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32266332 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32266379 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32266426 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32266473 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32266520 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32266567 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32266614 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32266661 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32266708 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32266755 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32266802 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32266849 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32266896 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32266943 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32266990 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32267037 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32267084 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32267131 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32267178 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32267225 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32267272 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32267319 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32267368 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32267415 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32267462 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32267509 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32267556 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32267605 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32267652 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32267699 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32267746 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32267793 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32267840 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32267887 CTTATCACATATATACACT
1 CTTATCACATATATACACT
32267906 GTCTTGGCTG
Statistics
Matches: 3108, Mismatches: 13, Indels: 8
0.99 0.00 0.00
Matches are distributed among these distances:
47 3017 0.97
49 91 0.03
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32271603 original size:40 final size:40
Alignment explanation
Indices: 32271479--32271657 Score: 127
Period size: 40 Copynumber: 4.5 Consensus size: 40
32271469 CATGATTGCT
* * *
32271479 CTTCGGGATTTAGCACGGATATA-TCAC-TAGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTAGCAC-AATGC
** * * * *
32271518 TCTTCGAAACATAGCCCGGATACA-TCAC-TAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTAACTTAGCA-CAATGC
* *
32271558 TCTTCGGGACTTAGCCCGGATTTAGTAAC-TCGCACCAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTAACTTAGCA-CAATGC
* * * *
32271599 CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTAACTTAGCACAATGC
32271639 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
32271658 CATCATTCGA
Statistics
Matches: 111, Mismatches: 23, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
39 3 0.03
40 89 0.80
41 19 0.17
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTTAGCACAATGC
Found at i:32271603 original size:80 final size:81
Alignment explanation
Indices: 32271462--32271657 Score: 202
Period size: 80 Copynumber: 2.4 Consensus size: 81
32271452 CGAATACACG
* * * * * *
32271462 TCACCAGCATGATTGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAATGCTCTTCGAAA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATAACTAGCACCAATGCTCTTCGAAA
32271527 CATAGCCCGGATA-CA
66 CATAGCCCGGATATCA
* * *
32271542 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATGC-CTTCGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA-TAACTAGCACCAATGCTCTTCGAA
* * * **
32271606 TCTTAGTCCGGATATGG
65 ACATAGCCCGGATATCA
* *
32271623 TCACTTAGCA-CAAAGC-CTTCGGGACTTAGCCCGGA
1 TCAC-TAGCATGAATGCTCTTCGGGACTTAGCCCGGA
32271658 CATCATTCGA
Statistics
Matches: 97, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
80 71 0.73
81 21 0.22
82 5 0.05
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATAACTAGCACCAATGCTCTTCGAAA
CATAGCCCGGATATCA
Found at i:32272002 original size:29 final size:29
Alignment explanation
Indices: 32271963--32272038 Score: 100
Period size: 29 Copynumber: 2.6 Consensus size: 29
32271953 CTTAATAATC
*
32271963 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
32271993 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
32272022 AGCCCGCACACTTAGTG
1 AACCCGCACACTTAGTG
32272039 ACAATCTCAC
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 35 0.85
30 3 0.07
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:32273986 original size:37 final size:37
Alignment explanation
Indices: 32273936--32274014 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
32273926 TTATTACGAA
* *
32273936 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
32273973 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
32274010 GTCTT
1 GTCTT
32274015 TACTCGGATA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:32274208 original size:47 final size:47
Alignment explanation
Indices: 32274130--32274509 Score: 634
Period size: 47 Copynumber: 8.1 Consensus size: 47
32274120 CCCTTCAGGA
* * * * * * *
32274130 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*** *
32274177 CCCGTCACATATATACACTTTCACATTCATCACATCGGCCATTATGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32274224 CTTATCACATATATACACTTTTACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32274271 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32274318 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32274365 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32274412 CTTATCACATATATACAATTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32274459 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32274506 CTTA
1 CTTA
32274510 CTATCATTTC
Statistics
Matches: 312, Mismatches: 21, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 312 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32278713 original size:27 final size:28
Alignment explanation
Indices: 32278661--32278718 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 28
32278651 CATATAAACA
* * *
32278661 AATAATAAAATGTGAATTTAATAAT-AT
1 AATAAAAAAATATGAATTTAAGAATAAT
32278688 AATAAAAAAATAT-AATTATAAGAATAAT
1 AATAAAAAAATATGAATT-TAAGAATAAT
32278716 AAT
1 AAT
32278719 TACATAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 4 0.15
27 17 0.65
28 5 0.19
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (28 bp):
AATAAAAAAATATGAATTTAAGAATAAT
Found at i:32279031 original size:7 final size:7
Alignment explanation
Indices: 32279019--32279211 Score: 111
Period size: 7 Copynumber: 27.6 Consensus size: 7
32279009 AAATGACATA
32279019 ATAATAT
1 ATAATAT
32279026 AT-A-AT
1 ATAATAT
32279031 ATAAT-T
1 ATAATAT
*
32279037 ATAATGT
1 ATAATAT
32279044 ATAATAT
1 ATAATAT
* *
32279051 AAAAGTGT
1 ATAA-TAT
32279059 AT-ATAT
1 ATAATAT
32279065 ATAATAT
1 ATAATAT
32279072 ATAATAT
1 ATAATAT
32279079 ATAATAT
1 ATAATAT
32279086 ATAAT-T
1 ATAATAT
32279092 AATAA-AT
1 -ATAATAT
32279099 AT-ATAAT
1 ATAAT-AT
32279106 ATAATA-
1 ATAATAT
32279112 ATAATAT
1 ATAATAT
32279119 ATAA-AT
1 ATAATAT
*
32279125 AATAATGT
1 -ATAATAT
*
32279133 AAAATAAT
1 ATAAT-AT
*
32279141 AATAATTT
1 -ATAATAT
*
32279149 ATGAA-AA
1 AT-AATAT
*
32279156 ATAATAC
1 ATAATAT
* *
32279163 ATTATAA
1 ATAATAT
32279170 ATAATA-
1 ATAATAT
32279176 ATAATAT
1 ATAATAT
32279183 AAATAATAT
1 --ATAATAT
*
32279192 ATAATAAA
1 ATAAT-AT
32279200 ATAATTAT
1 ATAA-TAT
32279208 ATAA
1 ATAA
32279212 CATAAAAAAT
Statistics
Matches: 146, Mismatches: 18, Indels: 43
0.71 0.09 0.21
Matches are distributed among these distances:
5 5 0.03
6 31 0.21
7 78 0.53
8 20 0.14
9 12 0.08
ACGTcount: A:0.59, C:0.01, G:0.03, T:0.38
Consensus pattern (7 bp):
ATAATAT
Found at i:32279046 original size:18 final size:18
Alignment explanation
Indices: 32279019--32279197 Score: 108
Period size: 18 Copynumber: 9.7 Consensus size: 18
32279009 AAATGACATA
32279019 ATAATATATAATATAATT
1 ATAATATATAATATAATT
*
32279037 ATAATGTATAATATAAAAGTGT
1 ATAATATATAATAT--AA-T-T
32279059 AT-ATATATAATATATAATAT
1 ATAATATAT-A-ATATAAT-T
32279079 ATAATATATAAT-TAA-T
1 ATAATATATAATATAATT
*
32279095 A-AATATATAATATAATA
1 ATAATATATAATATAATT
32279112 ATAATATATAAATAATAATGT
1 ATAATATAT-AAT-ATAAT-T
* *
32279133 AAAATA-ATAATA-ATTT
1 ATAATATATAATATAATT
* *
32279149 ATGAA-AAATAATA-CATT
1 AT-AATATATAATATAATT
32279166 ATAAATAATAATAATATAA--
1 AT-AAT-AT-ATAATATAATT
32279185 ATAATATATAATA
1 ATAATATATAATA
32279198 AAATAATTAT
Statistics
Matches: 129, Mismatches: 13, Indels: 40
0.71 0.07 0.22
Matches are distributed among these distances:
15 10 0.08
16 14 0.11
17 19 0.15
18 27 0.21
19 11 0.09
20 20 0.16
21 20 0.16
22 4 0.03
23 4 0.03
ACGTcount: A:0.59, C:0.01, G:0.03, T:0.38
Consensus pattern (18 bp):
ATAATATATAATATAATT
Found at i:32279051 original size:44 final size:45
Alignment explanation
Indices: 32279003--32279128 Score: 127
Period size: 44 Copynumber: 2.7 Consensus size: 45
32278993 ATAAAAATGG
32279003 ATATAAAAATGACATAATAATATATAATATAAT-TATAATGT-AT-A
1 ATATAAAAATGA-ATAATAATATATAATATAATATATAAT-TAATAA
*
32279047 ATATAAAAGTGTATATATATAATATATAATATATAATATATAATTAATAA
1 ATATAAAAATG-A-ATA-ATAATATAT-A-ATATAATATATAATTAATAA
*
32279097 ATATATAATAT-AATAATAATATATAA-ATAATA
1 ATATA-AAAATGAATAATAATATATAATATAATA
32279129 ATGTAAAATA
Statistics
Matches: 70, Mismatches: 4, Indels: 16
0.78 0.04 0.18
Matches are distributed among these distances:
44 16 0.23
45 5 0.07
46 10 0.14
47 10 0.14
48 11 0.16
49 9 0.13
50 6 0.09
51 3 0.04
ACGTcount: A:0.58, C:0.01, G:0.03, T:0.38
Consensus pattern (45 bp):
ATATAAAAATGAATAATAATATATAATATAATATATAATTAATAA
Found at i:32279114 original size:3 final size:3
Alignment explanation
Indices: 32279065--32279204 Score: 83
Period size: 3 Copynumber: 43.7 Consensus size: 3
32279055 GTGTATATAT
32279065 ATA ATA TATA ATA TATA ATA TATA ATTA ATAA ATA TATA AT- ATA ATA
1 ATA ATA -ATA ATA -ATA ATA -ATA A-TA AT-A ATA -ATA ATA ATA ATA
* * *
32279112 ATA ATA TATAA ATA ATA AT- GTA A-A ATA ATA ATA ATTT ATGA AAA ATA
1 ATA ATA -AT-A ATA ATA ATA ATA ATA ATA ATA ATA A-TA AT-A ATA ATA
*
32279159 ATA CATT ATAA ATA ATA ATA AT- ATAA ATA ATA TATA ATA A-A ATA AT
1 ATA -ATA AT-A ATA ATA ATA ATA AT-A ATA ATA -ATA ATA ATA ATA AT
32279205 TATATAACAT
Statistics
Matches: 110, Mismatches: 8, Indels: 38
0.71 0.05 0.24
Matches are distributed among these distances:
2 9 0.08
3 66 0.60
4 34 0.31
5 1 0.01
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.36
Consensus pattern (3 bp):
ATA
Found at i:32279126 original size:30 final size:30
Alignment explanation
Indices: 32279016--32279217 Score: 138
Period size: 30 Copynumber: 6.7 Consensus size: 30
32279006 TAAAAATGAC
* *
32279016 ATAATAATATATAATATAATTATAATGTATAAT
1 ATAATAATA-AT-ATATAAATA-AATATATAAT
* *
32279049 ATAA-AAGT-GTATATATAT-AATATATAAT
1 ATAATAA-TAATATATAAATAAATATATAAT
*
32279077 AT-ATAAT-ATATAATTAATAAATATATAAT
1 ATAATAATAATAT-ATAAATAAATATATAAT
* *
32279106 ATAATAATAATATATAAAT-AATAATGTAAA
1 ATAATAATAATATATAAATAAAT-ATATAAT
* *
32279136 ATAATAATAATTTATGAA-AAATA-ATACATT
1 ATAATAATAATATATAAATAAATATATA-A-T
32279166 ATAAATAATAATAATATAAAT-AATATATAAT
1 AT-AATAATAAT-ATATAAATAAATATATAAT
*
32279197 AAAATAAT--TATATAACATAAA
1 ATAATAATAATATATAA-ATAAA
32279218 AAATAAGGTT
Statistics
Matches: 136, Mismatches: 17, Indels: 36
0.72 0.09 0.19
Matches are distributed among these distances:
27 11 0.08
28 22 0.16
29 19 0.14
30 48 0.35
31 16 0.12
32 12 0.09
33 8 0.06
ACGTcount: A:0.59, C:0.01, G:0.02, T:0.37
Consensus pattern (30 bp):
ATAATAATAATATATAAATAAATATATAAT
Found at i:32281538 original size:210 final size:210
Alignment explanation
Indices: 32281137--32281776 Score: 922
Period size: 210 Copynumber: 3.1 Consensus size: 210
32281127 GAATACCAAA
* * * * * * * *
32281137 TCATCTTGGATCTTGCTTCAGTC-TAATCGTCTGAAGATCAGATCTGCCATGTATCT-TCTCCCC
1 TCATCTTGGATC-TGCTTCAG-CGTAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCCT-TCC
* * * * *
32281200 ATTGAATGTGGAGATGCCAGACTTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTA
63 A-TCAAAGTGGAAATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGATGACAAATCATCTTA
* * * *
32281265 GATTTG---C-T-GTAAACATGTGAAAGCCAAATCGGCTATATCTTTGATCTGCTCCCCGCTGAA
127 GATTTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCCGAA
32281325 TACAGAGAGATAAGATCTG
192 TACAGAGAGATAAGATCTG
32281344 TCATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCCTTCCATC
1 TCATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCCTTCCATC
* *
32281409 AAAGTGGAAATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGGTT
66 AAAGTGGAAATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGATGACAAATCATCTTAGATT
*
32281474 TGCTTCATCGTAAACACATGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCCGAATACA
131 TGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCCGAATACA
32281539 GAGAGATAAGATCTG
196 GAGAGATAAGATCTG
*
32281554 TCATCTTGGATCT-CTTTCAGCGTAAACATATGAAGGTGAGATCTGCTATGTGTCTGCCTTCCAT
1 TCATCTTGGATCTGC-TTCAGCGTAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCCTTCCAT
*
32281618 CAAAGTGGAAATGCCAGACTTTGATTTGTTCTCTGACAATACAGAGATGACAAATCATCTTAGAT
65 CAAAGTGGAAATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGATGACAAATCATCTTAGAT
* *
32281683 TTGCTTCATCGTAAACACGCGAAAGCCAAATCAGCTATATCTTCGATCTGTTCCCCGCCGAAT--
130 TTGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCCGAATAC
* *
32281746 ATAGAGATAAAATCTG
195 AGAGAGATAAGATCTG
*
32281762 TCATTTTGGATCTGC
1 TCATCTTGGATCTGC
32281777 CCCAATGAAG
Statistics
Matches: 394, Mismatches: 30, Indels: 16
0.90 0.07 0.04
Matches are distributed among these distances:
205 63 0.16
206 38 0.10
207 14 0.04
208 27 0.07
209 3 0.01
210 249 0.63
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (210 bp):
TCATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCCTTCCATC
AAAGTGGAAATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGATGACAAATCATCTTAGATT
TGCTTCATCGTAAACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCCGAATACA
GAGAGATAAGATCTG
Found at i:32292764 original size:15 final size:14
Alignment explanation
Indices: 32292744--32292792 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 14
32292734 TGTGATATTT
32292744 AATAATATAATAAAA
1 AATAAT-TAATAAAA
32292759 AATAATT-ATAAGAA
1 AATAATTAATAA-AA
32292773 TAATAATTACATAAAA
1 -AATAATTA-ATAAAA
32292789 AATA
1 AATA
32292793 TAAAAGATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
13 4 0.13
14 3 0.10
15 17 0.57
16 2 0.07
17 4 0.13
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (14 bp):
AATAATTAATAAAA
Found at i:32293094 original size:7 final size:7
Alignment explanation
Indices: 32293082--32293256 Score: 97
Period size: 7 Copynumber: 25.6 Consensus size: 7
32293072 AAATGACATA
32293082 ATAATAT
1 ATAATAT
32293089 AT-A-AT
1 ATAATAT
32293094 ATAAT-T
1 ATAATAT
*
32293100 ATAATGT
1 ATAATAT
32293107 ATAATAT
1 ATAATAT
32293114 A-AA-AGT
1 ATAATA-T
32293120 AT-ATAT
1 ATAATAT
32293126 ATAATAT
1 ATAATAT
32293133 ATAATAT
1 ATAATAT
32293140 ATAAT-T
1 ATAATAT
32293146 AATAAATAT
1 -AT-AATAT
32293155 ATAATAT
1 ATAATAT
32293162 AT-A-A-
1 ATAATAT
32293166 ATAATAT
1 ATAATAT
32293173 ATAA-AT
1 ATAATAT
*
32293179 AATAATGT
1 -ATAATAT
*
32293187 AAAATAAT
1 ATAAT-AT
*
32293195 AATAATTT
1 -ATAATAT
*
32293203 ATGAA-AA
1 AT-AATAT
*
32293210 ATAATAC
1 ATAATAT
*
32293217 ATAATAA
1 ATAATAT
*
32293224 AT-ATAA
1 ATAATAT
32293230 ATAATAT
1 ATAATAT
*
32293237 ATAATAAA
1 ATAAT-AT
32293245 ATAATTAT
1 ATAA-TAT
32293253 ATAA
1 ATAA
32293257 CATAAAAAAT
Statistics
Matches: 133, Mismatches: 13, Indels: 43
0.70 0.07 0.23
Matches are distributed among these distances:
4 2 0.02
5 7 0.05
6 29 0.22
7 69 0.52
8 20 0.15
9 6 0.05
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.37
Consensus pattern (7 bp):
ATAATAT
Found at i:32293109 original size:18 final size:17
Alignment explanation
Indices: 32293082--32293261 Score: 104
Period size: 15 Copynumber: 10.9 Consensus size: 17
32293072 AAATGACATA
32293082 ATAATATATAATATAATT
1 ATAATATATAATATAA-T
*
32293100 ATAATGTATAATATAA-
1 ATAATATATAATATAAT
*
32293116 A-AGTATAT-ATATAATAT
1 ATAATATATAATAT-A-AT
32293133 ATAATATATAAT-TAAT
1 ATAATATATAATATAAT
32293149 A-AATATATAATAT-AT
1 ATAATATATAATATAAT
32293164 A-AATA-AT-ATATAA-
1 ATAATATATAATATAAT
* *
32293177 ATAATAATGTAAAATAAT
1 ATAAT-ATATAATATAAT
*
32293195 AATAATTTATGAA-A-AAT
1 -ATAATATAT-AATATAAT
32293212 AATACATA-ATAAATATAA-
1 -ATA-ATATAT-AATATAAT
32293230 ATAATATATAATA-AA-
1 ATAATATATAATATAAT
*
32293245 ATAATTATATAACATAA
1 ATAA-TATATAATATAA
32293262 AAAATAAGGT
Statistics
Matches: 131, Mismatches: 11, Indels: 41
0.72 0.06 0.22
Matches are distributed among these distances:
13 5 0.04
14 10 0.08
15 30 0.23
16 22 0.17
17 25 0.19
18 28 0.21
19 11 0.08
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.37
Consensus pattern (17 bp):
ATAATATATAATATAAT
Found at i:32293114 original size:44 final size:48
Alignment explanation
Indices: 32293082--32293264 Score: 126
Period size: 48 Copynumber: 3.7 Consensus size: 48
32293072 AAATGACATA
* * *
32293082 ATAATATATAATATAATTATAATGTATAATATAAAAGTATATATATAATAT
1 ATAATATATAAT-TAA-TA-AATATATAATATAAAAATACATATATAATAT
*
32293133 ATAATATATAATTAATAAATATATAATATATAAATA-ATATATAA-AT
1 ATAATATATAATTAATAAATATATAATATAAAAATACATATATAATAT
* * * *
32293179 AATAATGTA-AAATAATAATAATTTATGAA-A-AATAATACATA-ATAAATAT
1 -ATAATATATAATTAAT-A-AATATAT-AATATAAAAATACATATAT-AATAT
* * *
32293228 AAATAATATATAATAAAATAATTATATAACATAAAAA
1 --ATAATATATAAT-TAATAAATATATAATATAAAAA
32293265 ATAAGGTTAA
Statistics
Matches: 106, Mismatches: 14, Indels: 24
0.74 0.10 0.17
Matches are distributed among these distances:
46 8 0.08
47 23 0.22
48 28 0.26
49 8 0.08
50 17 0.16
51 19 0.18
52 3 0.03
ACGTcount: A:0.61, C:0.01, G:0.02, T:0.36
Consensus pattern (48 bp):
ATAATATATAATTAATAAATATATAATATAAAAATACATATATAATAT
Found at i:32293136 original size:33 final size:34
Alignment explanation
Indices: 32293079--32293255 Score: 133
Period size: 33 Copynumber: 5.4 Consensus size: 34
32293069 TAAAAATGAC
*
32293079 ATAAT-AATATATAATATAAT-TATAATGTATAAT
1 ATAATAAATATAT-ATATAATATATAATATATAAT
*
32293112 ATAA-AAGTATATATATAATATATAATATATAAT
1 ATAATAAATATATATATAATATATAATATATAAT
*
32293145 -TAATAAATATATA-ATATATAAATAATATATAA-
1 ATAATAAATATATATATA-ATATATAATATATAAT
* * * *
32293177 ATAAT-AATGTA-AAATAATA-ATAATTTATGAAAA
1 ATAATAAATATATATATAATATATAATATAT--AAT
* * *
32293210 ATAATACATA-ATAAAT-ATAAATAATATATAAT
1 ATAATAAATATATATATAATATATAATATATAAT
* *
32293242 AAAATAATTATATA
1 ATAATAAATATATA
32293256 ACATAAAAAA
Statistics
Matches: 118, Mismatches: 13, Indels: 26
0.75 0.08 0.17
Matches are distributed among these distances:
30 8 0.07
31 4 0.03
32 32 0.27
33 60 0.51
34 14 0.12
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.37
Consensus pattern (34 bp):
ATAATAAATATATATATAATATATAATATATAAT
Found at i:32293154 original size:20 final size:20
Alignment explanation
Indices: 32293126--32293241 Score: 75
Period size: 20 Copynumber: 5.9 Consensus size: 20
32293116 AAGTATATAT
32293126 ATAATATATAATATATAATTA
1 ATAA-ATATAATATATAATTA
*
32293147 ATAAATATATAATATATAAATA
1 AT-AA-ATATAATATATAATTA
*
32293169 ATATATA-AATA-ATAA-T-
1 ATAAATATAATATATAATTA
* *
32293185 GTAAA-ATAATA-ATAATTT
1 ATAAATATAATATATAATTA
* * *
32293203 ATGAAAAATAATACATAATAA
1 AT-AAATATAATATATAATTA
32293224 ATATAA-ATAATATATAAT
1 ATA-AATATAATATATAAT
32293242 AAAATAATTA
Statistics
Matches: 79, Mismatches: 8, Indels: 17
0.76 0.08 0.16
Matches are distributed among these distances:
15 1 0.01
16 11 0.14
17 2 0.03
18 5 0.06
19 7 0.09
20 21 0.27
21 12 0.15
22 20 0.25
ACGTcount: A:0.61, C:0.01, G:0.02, T:0.36
Consensus pattern (20 bp):
ATAAATATAATATATAATTA
Found at i:32293265 original size:55 final size:54
Alignment explanation
Indices: 32293107--32293268 Score: 127
Period size: 55 Copynumber: 2.9 Consensus size: 54
32293097 ATTATAATGT
* * *
32293107 ATAATATA-AAAGT-ATATATATAATATATAATATATAATTAATAAATATATAATATATAA
1 ATAATATATAAA-TAATA-ATATAA-A-ATAATA-ATAA-TCATAAA-AAATAATACATAA
* * *
32293166 ATAATATATAAATAATAATGTAAAATAATAATAATTTATGAAAAATAATACAT-A
1 ATAATATATAAATAATAATATAAAATAATAATAA-TCATAAAAAATAATACATAA
32293220 ATAA-ATATAAATAATATATAATAAAATAATTATATAA-CATAAAAAATAA
1 ATAATATATAAATAATA-AT-ATAAAATAA-TA-ATAATCATAAAAAATAA
32293269 GGTTAAAAAA
Statistics
Matches: 89, Mismatches: 8, Indels: 16
0.79 0.07 0.14
Matches are distributed among these distances:
53 12 0.13
54 7 0.08
55 27 0.30
56 12 0.13
57 10 0.11
58 1 0.01
59 14 0.16
60 6 0.07
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.35
Consensus pattern (54 bp):
ATAATATATAAATAATAATATAAAATAATAATAATCATAAAAAATAATACATAA
Found at i:32297124 original size:61 final size:61
Alignment explanation
Indices: 32296982--32297153 Score: 151
Period size: 60 Copynumber: 2.8 Consensus size: 61
32296972 TCAAGCTTTA
* * * *
32296982 CTGGGCC-TATGCCCTATT-CAGAAATCAGAGT-TAACTGGGCCTTAGCCTATTTCAATATTAAT
1 CTGGGCCATA-GCCCTATTACAG-TATCAGAGTAT-ACTGGGCC-TAGCCCATATCAATATCAAT
* *
32297044 CTGGGCCATAGCCC-CTTACAGTATCAGAGTATACTGGGCCTAGCCCATATCAGTATCAAT
1 CTGGGCCATAGCCCTATTACAGTATCAGAGTATACTGGGCCTAGCCCATATCAATATCAAT
* * * *
32297104 CCT-GGCCGTAGCCCTATTACAAGT-TGAGA-TATATTGGGCCTTGCCCATAT
1 -CTGGGCCATAGCCCTATTAC-AGTATCAGAGTATACTGGGCCTAGCCCATAT
32297154 TAACACAGTT
Statistics
Matches: 93, Mismatches: 11, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
60 45 0.48
61 28 0.30
62 18 0.19
63 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.29
Consensus pattern (61 bp):
CTGGGCCATAGCCCTATTACAGTATCAGAGTATACTGGGCCTAGCCCATATCAATATCAAT
Found at i:32298855 original size:26 final size:26
Alignment explanation
Indices: 32298813--32298865 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32298803 AATCTATTCC
*
32298813 TGCTGAAGCCTCGGTTACTTGCGAAA
1 TGCTGAAGCCTCAGTTACTTGCGAAA
*
32298839 TGCTGAAGCTTCAGTTACTTGCGAAA
1 TGCTGAAGCCTCAGTTACTTGCGAAA
32298865 T
1 T
32298866 AAAAAGGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
TGCTGAAGCCTCAGTTACTTGCGAAA
Found at i:32301803 original size:61 final size:63
Alignment explanation
Indices: 32301728--32301876 Score: 186
Period size: 60 Copynumber: 2.5 Consensus size: 63
32301718 CTATTCAGAA
*
32301728 ATCAGAGT-TAACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCT-TTAC-AGT
1 ATCAGAGTAT-ACTGGGCCTTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGT
* * *
32301789 ATCAGAGTATACTGGGCC-TAGCCCATATCAGTATCAATCTTGGCCGTAGCCCTATTACAAGT
1 ATCAGAGTATACTGGGCCTTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGT
* *
32301851 -TGAGA-TATATTGGGCCTT-GCCCATAT
1 ATCAGAGTATACTGGGCCTTAGCCCATAT
32301877 TAACACAGTT
Statistics
Matches: 78, Mismatches: 6, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
60 49 0.63
61 25 0.32
62 4 0.05
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (63 bp):
ATCAGAGTATACTGGGCCTTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGT
Found at i:32301821 original size:32 final size:33
Alignment explanation
Indices: 32301682--32301824 Score: 85
Period size: 32 Copynumber: 4.5 Consensus size: 33
32301672 TCCCAACCAG
* *
32301682 AGCCCAAATCAGT-TCA-AGCTATACTGGGTC-T
1 AGCCCATATCAGTATCAGAG-TATACTGGGCCAT
* *
32301713 AAGCCC-TATTCAGAAATCAGAGT-TAACTGGGCCTT
1 -AGCCCATA-TCAG-TATCAGAGTAT-ACTGGGCCAT
* *
32301748 AGCCCATATCAATAT--TA--AT-CTGGGCCAT
1 AGCCCATATCAGTATCAGAGTATACTGGGCCAT
*
32301776 AGCCC-TTTACAGTATCAGAGTATACTGGGCC-T
1 AGCCCATAT-CAGTATCAGAGTATACTGGGCCAT
32301808 AGCCCATATCAGTATCA
1 AGCCCATATCAGTATCA
32301825 ATCTTGGCCG
Statistics
Matches: 85, Mismatches: 11, Indels: 30
0.67 0.09 0.24
Matches are distributed among these distances:
27 2 0.02
28 18 0.21
30 2 0.02
31 2 0.02
32 25 0.29
33 12 0.14
34 19 0.22
35 5 0.06
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (33 bp):
AGCCCATATCAGTATCAGAGTATACTGGGCCAT
Found at i:32304689 original size:17 final size:17
Alignment explanation
Indices: 32304664--32304696 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
32304654 ACACAGAAAG
*
32304664 TCATTATCAAATCCTTC
1 TCATCATCAAATCCTTC
32304681 TCATCATCAAATCCTT
1 TCATCATCAAATCCTT
32304697 TTACCTCCAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.30, C:0.30, G:0.00, T:0.39
Consensus pattern (17 bp):
TCATCATCAAATCCTTC
Found at i:32307563 original size:25 final size:27
Alignment explanation
Indices: 32307530--32307613 Score: 100
Period size: 25 Copynumber: 3.0 Consensus size: 27
32307520 AAATAGTATA
32307530 TATATTATTTTTATTATACATTATTCAT
1 TATATTATTTTTATTATACATTATT-AT
32307558 TATATTATATTATTATTATACATT-TTAT
1 TATATTAT-TT-TTATTATACATTATTAT
* *
32307586 T-TATAAGTTTTATTATACATTATATAT
1 TATATTATTTTTATTATACATTAT-TAT
32307613 T
1 T
32307614 TTACTATATA
Statistics
Matches: 50, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
25 12 0.24
26 3 0.06
27 8 0.16
28 11 0.22
29 4 0.08
30 12 0.24
ACGTcount: A:0.35, C:0.05, G:0.01, T:0.60
Consensus pattern (27 bp):
TATATTATTTTTATTATACATTATTAT
Found at i:32307601 original size:12 final size:12
Alignment explanation
Indices: 32307538--32307606 Score: 50
Period size: 13 Copynumber: 5.2 Consensus size: 12
32307528 TATATATTAT
32307538 TTTTATTATACA
1 TTTTATTATACA
*
32307550 TTATTCATTATATTATA
1 TT-TT-A-T-TA-TACA
32307567 TTATTATTATACA
1 TT-TTATTATACA
32307580 TTTTATTTATA-A
1 TTTTA-TTATACA
32307592 GTTTTATTATACA
1 -TTTTATTATACA
32307605 TT
1 TT
32307607 ATATATTTTA
Statistics
Matches: 47, Mismatches: 2, Indels: 16
0.72 0.03 0.25
Matches are distributed among these distances:
12 13 0.28
13 18 0.38
14 3 0.06
15 2 0.04
16 3 0.06
17 8 0.17
ACGTcount: A:0.33, C:0.06, G:0.01, T:0.59
Consensus pattern (12 bp):
TTTTATTATACA
Found at i:32307651 original size:22 final size:22
Alignment explanation
Indices: 32307549--32307675 Score: 76
Period size: 22 Copynumber: 5.3 Consensus size: 22
32307539 TTTATTATAC
32307549 ATTATTCATTATAT-TATATTATT
1 ATTATTCATTATATAT-TATT-TT
* * *
32307572 ATTATACATTTTATTTATAAGTTTT
1 ATTATTCA--TTATATATTA-TTTT
*
32307597 ATTATACATTATATATTTTACTATATAT
1 ATTATTCATTATATA--TTA-T-T-T-T
* *
32307625 ATTATTCCTTATATTTTATTTT
1 ATTATTCATTATATATTATTTT
**
32307647 ATTATGAATTATATATTATTTT
1 ATTATTCATTATATATTATTTT
32307669 ATTATTC
1 ATTATTC
32307676 TTTAATGGTG
Statistics
Matches: 80, Mismatches: 15, Indels: 19
0.70 0.13 0.17
Matches are distributed among these distances:
22 24 0.30
23 14 0.17
24 1 0.01
25 20 0.25
26 7 0.09
27 1 0.01
28 13 0.16
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.60
Consensus pattern (22 bp):
ATTATTCATTATATATTATTTT
Found at i:32307757 original size:20 final size:19
Alignment explanation
Indices: 32307708--32307757 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 19
32307698 TTTTTTTAAT
*
32307708 TATTATTAAATAATGTATA
1 TATTATTAAATAATGTACA
32307727 TCATTATTAAATAAT-TAGCA
1 T-ATTATTAAATAATGTA-CA
32307747 TATTATATAAA
1 TATTAT-TAAA
32307758 GTTCTAGAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (19 bp):
TATTATTAAATAATGTACA
Found at i:32308922 original size:2 final size:2
Alignment explanation
Indices: 32308915--32308940 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
32308905 AAAAATGATG
32308915 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
32308941 GAAATCAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32311008 original size:177 final size:176
Alignment explanation
Indices: 32310712--32311087 Score: 558
Period size: 177 Copynumber: 2.1 Consensus size: 176
32310702 TTAGGGTCGT
* * *
32310712 CATCCTCAATCTGCTCCACAACTGCTTAGGGAAATAGATCTTCAATCTTCAGTCTGCTTCTTTGC
1 CATCCTCGATCTGCTCCACAACTACTTAGGGAAATAGATCTTCAATCTTCAGTCTGCTTCCTTGC
* * * *
32310777 TACCTCTAGAAGATAAGACTACAATCGCCAGCCTGCTCTCTTGCTACATCAGAGAGATAAGGCTA
66 TACCTCTAGAAGATAAAACTACAATCACCAACCTACTCTCTTGCTACATCAGAGAGATAAGGCTA
*
32310842 GTGGCTAAAATCTGCTCCATTGCTAG-TACATGGAGATAAGATTCGC
131 GTGGCTAAAATCTGCTCCATTAC-AGATACATGGAGATAAGATTCGC
**
32310888 CATCCTCGATCTGCTCCACAACTACTTAGGGCGATAAGATCTTCAATCTTCAGTCTGCTTCCTTG
1 CATCCTCGATCTGCTCCACAACTACTTAGGGAAAT-AGATCTTCAATCTTCAGTCTGCTTCCTTG
* *
32310953 CTACCTC-AGGAAGATAAAACTACAATCATCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGC
65 CTACCTCTA-GAAGATAAAACTACAATCACCAACCTACTCTCTTGCTACATCAGAGAGATAAGGC
* * *
32311017 TAGTGGCTAAAATCTGCTCTATTACCGATACATGGAGATAAGATTTGC
129 TAGTGGCTAAAATCTGCTCCATTACAGATACATGGAGATAAGATTCGC
* *
32311065 CATCTTCGATCTGCTCGACAACT
1 CATCCTCGATCTGCTCCACAACT
32311088 CAGAGAGATA
Statistics
Matches: 180, Mismatches: 17, Indels: 5
0.89 0.08 0.02
Matches are distributed among these distances:
176 33 0.18
177 147 0.82
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (176 bp):
CATCCTCGATCTGCTCCACAACTACTTAGGGAAATAGATCTTCAATCTTCAGTCTGCTTCCTTGC
TACCTCTAGAAGATAAAACTACAATCACCAACCTACTCTCTTGCTACATCAGAGAGATAAGGCTA
GTGGCTAAAATCTGCTCCATTACAGATACATGGAGATAAGATTCGC
Found at i:32311100 original size:85 final size:85
Alignment explanation
Indices: 32311001--32311165 Score: 249
Period size: 85 Copynumber: 1.9 Consensus size: 85
32310991 CTCTTGCTAC
* * **
32311001 CTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCTATTACCGATACATGGAGATAAGATTTGCC
1 CTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCAATACCGATACATGGAGATAAGATTCACC
**
32311066 ATCTTCGATCTGCTCGACAA
66 ATCCACGATCTGCTCGACAA
* * *
32311086 CTCAGAGAGATAAGGCTAGTGGCTAAAATCTGTTCCAATGCCGATATATGGAGATAAGATTCACC
1 CTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCAATACCGATACATGGAGATAAGATTCACC
32311151 ATCCACGATCTGCTC
66 ATCCACGATCTGCTC
32311166 CACTACTGCC
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
85 71 1.00
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (85 bp):
CTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCAATACCGATACATGGAGATAAGATTCACC
ATCCACGATCTGCTCGACAA
Found at i:32311225 original size:38 final size:39
Alignment explanation
Indices: 32311181--32311264 Score: 98
Period size: 42 Copynumber: 2.1 Consensus size: 39
32311171 CTGCCTAGGG
* *
32311181 AGATAAGA-TCTTCAATCTGCTTTATTGCTACCTCAGAA
1 AGATAAGACTCTTCAACCTGCTCTATTGCTACCTCAGAA
* *
32311219 AGATAAGACTCTTCTTCAACCTGCTCTCTTGCTACCTCAGAG
1 AGATAAGA--C-TCTTCAACCTGCTCTATTGCTACCTCAGAA
32311261 AGAT
1 AGAT
32311265 TAGGCTGATA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
38 8 0.21
42 30 0.79
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (39 bp):
AGATAAGACTCTTCAACCTGCTCTATTGCTACCTCAGAA
Found at i:32311478 original size:177 final size:177
Alignment explanation
Indices: 32311086--32311844 Score: 1022
Period size: 177 Copynumber: 4.3 Consensus size: 177
32311076 TGCTCGACAA
* * * * *
32311086 CTCAGAGAGATAAGGCTAGTGGCTAAAATCTGTTCCAATGCCGATATATGGAGATAAGATTCACC
1 CTCAGAGAGATAAGGCCAGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACC
** *
32311151 ATCCACGATCTGCTCCACTACTGCCTAGGGAGATAAGATCTTCAAT-CT--G-CT--TT-ATTGC
66 ATCTGCGATCTGCTCCACTACTGCCTAGGGAGATAAGATCTTCAATCCTCAGTCTGCTTCCTTGC
* *
32311209 TACCTCAGAAAGATAAGACT--CTTCTTCAACCTGCTCTCTTGCTAC
131 TACCTCAGGAAGATAAGACTACCATCTTCAACCTGCTCTCTTGCTAC
* * * ** *
32311254 CTCAGAGAGATTAGG-CTGATAGCAAAAATCTGCTCCATTGCCGATACATGTAGATAAGATTCAC
1 CTCAGAGAGATAAGGCCAG-TGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCAC
* * * *
32311318 CATCTGCAATCTGCTCCACTATTGCCTAGGGAGATAAGATATTCAATCCTCAGTCTACTTCCTTG
65 CATCTGCGATCTGCTCCACTACTGCCTAGGGAGATAAGATCTTCAATCCTCAGTCTGCTTCCTTG
* *
32311383 CTACCTTAGGAAGATAAGACTACCATTTTCAACCTGCTCTCTTGCTAC
130 CTACCTCAGGAAGATAAGACTACCATCTTCAACCTGCTCTCTTGCTAC
*
32311431 CTCAGAGAGATAAGGCCAGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAAATTCACC
1 CTCAGAGAGATAAGGCCAGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACC
*
32311496 ATCTGCGATCTGCTCCACTACTGCCTAGGAAGATAAGATCTTCAATCCTCAGTCTGCTTCCTTGC
66 ATCTGCGATCTGCTCCACTACTGCCTAGGGAGATAAGATCTTCAATCCTCAGTCTGCTTCCTTGC
32311561 TACCTCAGGAAGATAAGACTACCATCTTCAACCTGCTCTCTTGCTAC
131 TACCTCAGGAAGATAAGACTACCATCTTCAACCTGCTCTCTTGCTAC
* * *
32311608 CTCAAAGAGATAAGGCCAGTGGCTTAAATCTGCTCCATTGCCGATTCATGGAGATAAGATTCACT
1 CTCAGAGAGATAAGGCCAGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACC
* ** *
32311673 ATCCT-CGATCTGCTCCACTACTG-CTTGGGAGATAAGATCTGT-AATTTTCAGTCTGCTTTCTT
66 AT-CTGCGATCTGCTCCACTACTGCCTAGGGAGATAAGATCT-TCAATCCTCAGTCTGCTTCCTT
* * **
32311735 GCTACCTCAGGAAAATAAGACTACAATCGCCAACCTGCTCTCTTGCTAC
129 GCTACCTCAGGAAGATAAGACTACCATCTTCAACCTGCTCTCTTGCTAC
* * * * ** *
32311784 CTTAGAGAGATAAAGCCAATGGCTTAAATCTGTTCTGTTGTCGATACATGGAGATAAGATT
1 CTCAGAGAGATAAGGCCAGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATT
32311845 TGCCATCTTT
Statistics
Matches: 523, Mismatches: 55, Indels: 18
0.88 0.09 0.03
Matches are distributed among these distances:
167 1 0.00
168 95 0.18
169 2 0.00
171 1 0.00
172 2 0.00
174 2 0.00
175 22 0.04
176 129 0.25
177 265 0.51
178 4 0.01
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (177 bp):
CTCAGAGAGATAAGGCCAGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACC
ATCTGCGATCTGCTCCACTACTGCCTAGGGAGATAAGATCTTCAATCCTCAGTCTGCTTCCTTGC
TACCTCAGGAAGATAAGACTACCATCTTCAACCTGCTCTCTTGCTAC
Found at i:32311606 original size:44 final size:44
Alignment explanation
Indices: 32311379--32311611 Score: 122
Period size: 44 Copynumber: 5.3 Consensus size: 44
32311369 AGTCTACTTC
* * *
32311379 CTTGCTACCTTAGGAAGATAAGACTACCATTTTCAACCTGCTCT
1 CTTGCTACCTCAGGAAGATAAGACTACCATCTTCAATCTGCTCT
* * **** *
32311423 CTTGCTACCTCA-GAGAGATAAGGCCAGTGGCTTAAATCTGCTC-
1 CTTGCTACCTCAGGA-AGATAAGACTACCATCTTCAATCTGCTCT
* * * * *
32311466 CATTGC--CGATACATGG-AGATAAAATTCACCATCTGCGATCTGCTC-
1 C-TTGCTAC-CT-CA-GGAAGATAAGACT-ACCATCTTCAATCTGCTCT
* * * * * * *
32311511 CACTACTGCCT-AGGAAGATAAGATCTTCAATCCTCAGTCTGCT-T
1 C-TTGCTACCTCAGGAAGATAAGA-CTACCATCTTCAATCTGCTCT
*
32311555 CCTTGCTACCTCAGGAAGATAAGACTACCATCTTCAACCTGCTCT
1 -CTTGCTACCTCAGGAAGATAAGACTACCATCTTCAATCTGCTCT
32311600 CTTGCTACCTCA
1 CTTGCTACCTCA
32311612 AAGAGATAAG
Statistics
Matches: 133, Mismatches: 41, Indels: 30
0.65 0.20 0.15
Matches are distributed among these distances:
42 1 0.01
43 6 0.05
44 93 0.70
45 30 0.23
46 2 0.02
47 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.28
Consensus pattern (44 bp):
CTTGCTACCTCAGGAAGATAAGACTACCATCTTCAATCTGCTCT
Found at i:32311809 original size:353 final size:345
Alignment explanation
Indices: 32311086--32311840 Score: 1005
Period size: 353 Copynumber: 2.2 Consensus size: 345
32311076 TGCTCGACAA
* * * * *
32311086 CTCAGAGAGATAAGGCTAGTGGCTAAAATCTGTTCCAATGCCGATATATGGAGATAAGATTCACC
1 CTCAGAGAGATAAGGCCAGTGGCTTAAATCTGTTCCATTGCCGATACATGGAGATAAAATTCACC
*
32311151 ATCCACGATCTGCTCCACTACTGCCTAGGGAGATAAGATCTTCAATCTGCTTTATTGCTACCTCA
66 ATCCACGATCTGCTCCACTACTGCCTAGGAAGATAAGATCTTCAATCTGCTTTATTGCTACCTCA
* * * *
32311216 GAAAGATAAGACTCTTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATTAGGCTGATAGCAAAA
131 GAAAGATAAGACTCATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCAGATAGCAAAA
* *
32311281 ATCTGCTCCATTGCCGATACATGTAGATAAGATTCACCATCTGCAATCTGCTCCACTATTGCCTA
196 ATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTGCAATCTGCTCCACTACTGCCTA
* * * **
32311346 GGGAGATAAGATATTCAATCCTCAGTCTACTTCCTTGCTACCTTAGGAAGATAAGACTACCATTT
261 GGGAGATAAGATATTCAATCCTCAGTCTACTTCCTTGCTACCTCAGGAAAATAAGACTACAATCG
*
32311411 TCAACCTGCTCTCTTGCTAC
326 CCAACCTGCTCTCTTGCTAC
*
32311431 CTCAGAGAGATAAGGCCAGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAAATTCACC
1 CTCAGAGAGATAAGGCCAGTGGCTTAAATCTGTTCCATTGCCGATACATGGAGATAAAATTCACC
** *
32311496 ATCTGCGATCTGCTCCACTACTGCCTAGGAAGATAAGATCTTCAATCCTCAGTCTGCTTCCTTGC
66 ATCCACGATCTGCTCCACTACTGCCTAGGAAGATAAGATCTTCAAT-CT--G-CT--TT-ATTGC
*
32311561 TACCTCAGGAAGATAAGACTACCATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCCA
124 TACCTCAGAAAGATAAGACT--CATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGG-CA
* ** * * *
32311626 G-TGGCTTAAATCTGCTCCATTGCCGATTCATGGAGATAAGATTCACTATCCT-CGATCTGCTCC
186 GATAGCAAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCAT-CTGCAATCTGCTCC
* * ** * *
32311689 ACTACTG-CTTGGGAGATAAGATCTGT-AATTTTCAGTCTGCTTTCTTGCTACCTCAGGAAAATA
250 ACTACTGCCTAGGGAGATAAGATAT-TCAATCCTCAGTCTACTTCCTTGCTACCTCAGGAAAATA
32311752 AGACTACAATCGCCAACCTGCTCTCTTGCTAC
314 AGACTACAATCGCCAACCTGCTCTCTTGCTAC
* * * ** *
32311784 CTTAGAGAGATAAAGCCAATGGCTTAAATCTGTTCTGTTGTCGATACATGGAGATAA
1 CTCAGAGAGATAAGGCCAGTGGCTTAAATCTGTTCCATTGCCGATACATGGAGATAA
32311841 GATTTGCCAT
Statistics
Matches: 356, Mismatches: 42, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
345 102 0.29
346 2 0.01
348 1 0.00
349 2 0.01
351 2 0.01
352 23 0.06
353 124 0.35
354 96 0.27
355 4 0.01
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (345 bp):
CTCAGAGAGATAAGGCCAGTGGCTTAAATCTGTTCCATTGCCGATACATGGAGATAAAATTCACC
ATCCACGATCTGCTCCACTACTGCCTAGGAAGATAAGATCTTCAATCTGCTTTATTGCTACCTCA
GAAAGATAAGACTCATCTTCAACCTGCTCTCTTGCTACCTCAAAGAGATAAGGCAGATAGCAAAA
ATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTGCAATCTGCTCCACTACTGCCTA
GGGAGATAAGATATTCAATCCTCAGTCTACTTCCTTGCTACCTCAGGAAAATAAGACTACAATCG
CCAACCTGCTCTCTTGCTAC
Found at i:32311882 original size:45 final size:45
Alignment explanation
Indices: 32311833--32311977 Score: 139
Period size: 45 Copynumber: 3.2 Consensus size: 45
32311823 GTCGATACAT
* *
32311833 GGAGATAAGATTTGCCATCTTTGGTCTGTTCCACTGCAACTTCAG
1 GGAGATAAGATTTGTCATCTTTGATCTGTTCCACTGCAACTTCAG
** * ** * *
32311878 GGAGATAAGACCTATCA-CTTCAACCTGCTCCACTGCAACTTCAG
1 GGAGATAAGATTTGTCATCTTTGATCTGTTCCACTGCAACTTCAG
* * * * * *
32311922 GGAGATAAGGTTTGTAATCTTTGATATATTCCGCTACAACTTCAG
1 GGAGATAAGATTTGTCATCTTTGATCTGTTCCACTGCAACTTCAG
*
32311967 AGAGATAAGAT
1 GGAGATAAGAT
32311978 CTGACTTCAC
Statistics
Matches: 75, Mismatches: 24, Indels: 2
0.74 0.24 0.02
Matches are distributed among these distances:
44 34 0.45
45 41 0.55
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (45 bp):
GGAGATAAGATTTGTCATCTTTGATCTGTTCCACTGCAACTTCAG
Found at i:32313299 original size:26 final size:26
Alignment explanation
Indices: 32313269--32313344 Score: 91
Period size: 25 Copynumber: 2.8 Consensus size: 26
32313259 TCCCTTTTCT
32313269 TTCTTTTTTTTTGATTTTTTAATTGA
1 TTCTTTTTTTTTGATTTTTTAATTGA
* * *
32313295 TTC-TTTTTTTTGATTTTTGATTTTTA
1 TTCTTTTTTTTTGATTTTTTA-ATTGA
32313321 TTCTTTTTTTTCTTGATTTTTTAA
1 TTC-TTTTTTT-TTGATTTTTTAA
32313345 GGTTTCAAGG
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
25 16 0.39
26 9 0.22
28 6 0.15
29 10 0.24
ACGTcount: A:0.13, C:0.05, G:0.07, T:0.75
Consensus pattern (26 bp):
TTCTTTTTTTTTGATTTTTTAATTGA
Found at i:32313896 original size:21 final size:20
Alignment explanation
Indices: 32313866--32313904 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
32313856 ATTGCTTTTC
*
32313866 CTTTTTTTTTCTATTTTTGTA
1 CTTTTGTTTT-TATTTTTGTA
*
32313887 CTTTTGTTTTTCTTTTTG
1 CTTTTGTTTTTATTTTTG
32313905 GATGCCTTTG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.05, C:0.10, G:0.08, T:0.77
Consensus pattern (20 bp):
CTTTTGTTTTTATTTTTGTA
Found at i:32321562 original size:46 final size:46
Alignment explanation
Indices: 32321495--32321763 Score: 257
Period size: 46 Copynumber: 5.8 Consensus size: 46
32321485 TATTTGGGCA
*
32321495 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
* * * *
32321541 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--AATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAC---G
* *
32321586 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
* *
32321634 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAC---G
* * *
32321679 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
* * *
32321727 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32321764 GCGGGTTACA
Statistics
Matches: 182, Mismatches: 23, Indels: 36
0.76 0.10 0.15
Matches are distributed among these distances:
42 5 0.03
43 8 0.04
45 6 0.03
46 90 0.49
47 56 0.31
48 5 0.03
50 7 0.04
51 5 0.03
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
Found at i:32321606 original size:47 final size:47
Alignment explanation
Indices: 32321541--32321709 Score: 204
Period size: 47 Copynumber: 3.6 Consensus size: 47
32321531 GATGTGAACG
*
32321541 TCCGAACTCGTTGAGTTGAGTCTGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
* * * *
32321588 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-T-GCGAA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTAACTAG-GCA
*
32321632 TGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
*
32321681 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
32321710 ACCTATGGAT
Statistics
Matches: 103, Mismatches: 10, Indels: 18
0.79 0.08 0.14
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 32 0.31
47 59 0.57
48 2 0.02
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
Found at i:32321650 original size:93 final size:93
Alignment explanation
Indices: 32321491--32321756 Score: 451
Period size: 93 Copynumber: 2.9 Consensus size: 93
32321481 AGGATATTTG
* *
32321491 GGCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
*
32321556 TTGAGTCTGAGTTCGTGAAATGTAACTA
66 TTGAGTCCGAGTTCGTGAAATGTAACTA
*
32321584 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
*
32321649 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAAATGTAACTA
* * * *
32321677 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
32321742 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
32321757 CTTATGGGCG
Statistics
Matches: 163, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 163 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAAATGTAACTA
Found at i:32323440 original size:32 final size:32
Alignment explanation
Indices: 32323394--32323479 Score: 102
Period size: 32 Copynumber: 2.7 Consensus size: 32
32323384 TGTCAATCAT
* *
32323394 TTCAATATCCAACAAGCTTAAAACATAATAAA
1 TTCAATATCTAACAAACTTAAAACATAATAAA
* * * *
32323426 TTCAATATTTAACAAATTTAAGACATAATAAT
1 TTCAATATCTAACAAACTTAAAACATAATAAA
*
32323458 TTCAAAATCTAACAAAC-TAAAA
1 TTCAATATCTAACAAACTTAAAA
32323480 TTTCAATATC
Statistics
Matches: 44, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
31 4 0.09
32 40 0.91
ACGTcount: A:0.53, C:0.15, G:0.02, T:0.29
Consensus pattern (32 bp):
TTCAATATCTAACAAACTTAAAACATAATAAA
Found at i:32323663 original size:43 final size:43
Alignment explanation
Indices: 32323615--32323701 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
32323605 ATAGTATGTG
32323615 TAATTTCGTCTCTCTTAGCAAACCATTCTCTTGCTTCTTCTCT
1 TAATTTCGTCTCTCTTAGCAAACCATTCTCTTGCTTCTTCTCT
32323658 TAATTTCGTCTCTCTTAGCAAACCATTCTCTTGCTTCTTCTCT
1 TAATTTCGTCTCTCTTAGCAAACCATTCTCTTGCTTCTTCTCT
32323701 T
1 T
32323702 TCTTCTCGCT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.16, C:0.30, G:0.07, T:0.47
Consensus pattern (43 bp):
TAATTTCGTCTCTCTTAGCAAACCATTCTCTTGCTTCTTCTCT
Found at i:32324764 original size:11 final size:11
Alignment explanation
Indices: 32324744--32324797 Score: 58
Period size: 11 Copynumber: 5.0 Consensus size: 11
32324734 TTAGAATATA
*
32324744 CCCATTCCTTG
1 CCCATACCTTG
32324755 CCCATACCTTG
1 CCCATACCTTG
32324766 CCCATACCCTT-
1 CCCATA-CCTTG
* *
32324777 CCCATATC-TA
1 CCCATACCTTG
32324787 CCCATACCTTG
1 CCCATACCTTG
32324798 GAAAGGTCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
9 1 0.03
10 8 0.22
11 23 0.64
12 4 0.11
ACGTcount: A:0.19, C:0.46, G:0.06, T:0.30
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:32325358 original size:18 final size:18
Alignment explanation
Indices: 32325335--32325405 Score: 79
Period size: 18 Copynumber: 3.9 Consensus size: 18
32325325 CCATTTGCAG
32325335 CACTATTCACGTATACAA
1 CACTATTCACGTATACAA
* * *
32325353 CACTATTTACATATACGA
1 CACTATTCACGTATACAA
* *
32325371 CACTATTTACGTATACAG
1 CACTATTCACGTATACAA
* *
32325389 TACTGTTCACGTATACA
1 CACTATTCACGTATACA
32325406 GTAGTTGGGA
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 44 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.32
Consensus pattern (18 bp):
CACTATTCACGTATACAA
Found at i:32329463 original size:11 final size:11
Alignment explanation
Indices: 32329443--32329496 Score: 74
Period size: 11 Copynumber: 5.0 Consensus size: 11
32329433 TTAGAATATA
*
32329443 CCCATTCCTTG
1 CCCATACCTTG
32329454 CCCATACCTTG
1 CCCATACCTTG
*
32329465 CCCATACCTTT
1 CCCATACCTTG
*
32329476 CCCATACC-TA
1 CCCATACCTTG
32329486 CCCATACCTTG
1 CCCATACCTTG
32329497 GAAAGGTCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
10 9 0.24
11 29 0.76
ACGTcount: A:0.19, C:0.46, G:0.06, T:0.30
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:32329938 original size:50 final size:50
Alignment explanation
Indices: 32329863--32329962 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
32329853 TAAAGGGATA
32329863 TTCTGGCTAGGAAAGACTTGGTACTTAAGTGATCCTCGTGATCCACCTCT
1 TTCTGGCTAGGAAAGACTTGGTACTTAAGTGATCCTCGTGATCCACCTCT
32329913 TTCTGGCTAGGAAAGACTTGGTACTTAAGTGATCCTCGTGATCCACCTCT
1 TTCTGGCTAGGAAAGACTTGGTACTTAAGTGATCCTCGTGATCCACCTCT
32329963 CTTTCCTGGG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.32
Consensus pattern (50 bp):
TTCTGGCTAGGAAAGACTTGGTACTTAAGTGATCCTCGTGATCCACCTCT
Found at i:32335505 original size:26 final size:26
Alignment explanation
Indices: 32335469--32335552 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
32335459 TGATACAAAT
32335469 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
32335495 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
32335521 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
32335547 TGATAA
1 TGATAA
32335553 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.35, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:32344066 original size:43 final size:43
Alignment explanation
Indices: 32344016--32344102 Score: 115
Period size: 43 Copynumber: 2.0 Consensus size: 43
32344006 ATTTTTGTTT
**
32344016 TCGATATGTGTTTACGA-GTAAGACC-CTGTCTGGGACAGTGGCA
1 TCGATATGTGGCTAC-ATGTAAGACCAC-GTCTGGGACAGTGGCA
*
32344059 TCGATATGTGGCTACATGTAAGACCACGTCTGGGACATTGGCA
1 TCGATATGTGGCTACATGTAAGACCACGTCTGGGACAGTGGCA
32344102 T
1 T
32344103 TGTATGATAT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
42 1 0.03
43 37 0.95
44 1 0.03
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.28
Consensus pattern (43 bp):
TCGATATGTGGCTACATGTAAGACCACGTCTGGGACAGTGGCA
Found at i:32346170 original size:19 final size:19
Alignment explanation
Indices: 32346146--32346186 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
32346136 CCCTAACAAA
32346146 TTTCTTTTTTCCTTTTCAT
1 TTTCTTTTTTCCTTTTCAT
*
32346165 TTTCTTTTTTCTTTTTCAT
1 TTTCTTTTTTCCTTTTCAT
32346184 TTT
1 TTT
32346187 GTTTACTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.05, C:0.17, G:0.00, T:0.78
Consensus pattern (19 bp):
TTTCTTTTTTCCTTTTCAT
Found at i:32356487 original size:3 final size:3
Alignment explanation
Indices: 32356468--32356531 Score: 94
Period size: 3 Copynumber: 21.3 Consensus size: 3
32356458 TCATTTTCTA
* *
32356468 TAT TAC TAT TGAT TAT TAT T-T TGT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
32356513 TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT T
32356532 CGTTTGGTAA
Statistics
Matches: 56, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
2 2 0.04
3 51 0.91
4 3 0.05
ACGTcount: A:0.30, C:0.02, G:0.03, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:32358211 original size:6 final size:5
Alignment explanation
Indices: 32358195--32358263 Score: 57
Period size: 6 Copynumber: 12.2 Consensus size: 5
32358185 GTCCATCTCA
*
32358195 TTTAT TTTAT CTTTAT CTTTAT TTTAAT TTTAAT TTTATT TTTATT TTTCT
1 TTTAT TTTAT -TTTAT -TTTAT TTT-AT TTT-AT TTTA-T TTTA-T TTTAT
32358246 GTTTATT TTTAT TTTAT T
1 -TTTA-T TTTAT TTTAT T
32358264 AAACTCCTTT
Statistics
Matches: 57, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
5 17 0.30
6 39 0.68
7 1 0.02
ACGTcount: A:0.19, C:0.04, G:0.01, T:0.75
Consensus pattern (5 bp):
TTTAT
Found at i:32358226 original size:17 final size:17
Alignment explanation
Indices: 32358195--32358262 Score: 70
Period size: 18 Copynumber: 3.9 Consensus size: 17
32358185 GTCCATCTCA
32358195 TTTA-TTTTATCTTTATC
1 TTTATTTTTAT-TTTATC
*
32358212 TTTATTTTAATTTTAAT-
1 TTTATTTTTATTTT-ATC
32358229 TTTATTTTTATTTT-TC
1 TTTATTTTTATTTTATC
32358245 TGTTTATTTTTATTTTAT
1 --TTTATTTTTATTTTAT
32358263 TAAACTCCTT
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
15 1 0.02
17 20 0.47
18 21 0.49
19 1 0.02
ACGTcount: A:0.19, C:0.04, G:0.01, T:0.75
Consensus pattern (17 bp):
TTTATTTTTATTTTATC
Found at i:32358238 original size:29 final size:29
Alignment explanation
Indices: 32358198--32358263 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
32358188 CATCTCATTT
*
32358198 ATTTTATCTTTATCTTTAT-TTTAATTTTA
1 ATTTTATTTTTATCTTTATGTTT-ATTTTA
* * *
32358227 ATTTTATTTTTATTTTTCTGTTTATTTTT
1 ATTTTATTTTTATCTTTATGTTTATTTTA
32358256 ATTTTATT
1 ATTTTATT
32358264 AAACTCCTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 29 0.91
30 3 0.09
ACGTcount: A:0.20, C:0.05, G:0.02, T:0.74
Consensus pattern (29 bp):
ATTTTATTTTTATCTTTATGTTTATTTTA
Found at i:32358261 original size:23 final size:22
Alignment explanation
Indices: 32358198--32358263 Score: 69
Period size: 23 Copynumber: 2.9 Consensus size: 22
32358188 CATCTCATTT
*
32358198 ATTTTATCTTTATCTTTATTTTA
1 ATTTTATTTTTAT-TTTATTTTA
* *
32358221 ATTTTAATTTTATTTTTATTTTT
1 ATTTTATTTTTA-TTTTATTTTA
*
32358244 CTGTTTATTTTTATTTTATT
1 AT-TTTATTTTTATTTTATT
32358264 AAACTCCTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
23 26 0.72
24 10 0.28
ACGTcount: A:0.20, C:0.05, G:0.02, T:0.74
Consensus pattern (22 bp):
ATTTTATTTTTATTTTATTTTA
Found at i:32362863 original size:17 final size:17
Alignment explanation
Indices: 32362841--32362894 Score: 59
Period size: 17 Copynumber: 3.6 Consensus size: 17
32362831 CAAGATATAT
32362841 CAATCAAAATCATAAAC
1 CAATCAAAATCATAAAC
32362858 CAATCAAAAT--T----
1 CAATCAAAATCATAAAC
32362869 C-ATCAAAATCATAAAC
1 CAATCAAAATCATAAAC
32362885 CAATCAAAAT
1 CAATCAAAAT
32362895 TTATCCTAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 14
0.68 0.00 0.32
Matches are distributed among these distances:
10 8 0.27
11 1 0.03
12 1 0.03
15 1 0.03
16 1 0.03
17 18 0.60
ACGTcount: A:0.57, C:0.22, G:0.00, T:0.20
Consensus pattern (17 bp):
CAATCAAAATCATAAAC
Found at i:32362873 original size:27 final size:27
Alignment explanation
Indices: 32362843--32362895 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
32362833 AGATATATCA
32362843 ATCAAAATCATAAACCAATCAAAATTC
1 ATCAAAATCATAAACCAATCAAAATTC
32362870 ATCAAAATCATAAACCAATCAAAATT
1 ATCAAAATCATAAACCAATCAAAATT
32362896 TATCCTAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.57, C:0.21, G:0.00, T:0.23
Consensus pattern (27 bp):
ATCAAAATCATAAACCAATCAAAATTC
Found at i:32375278 original size:12 final size:12
Alignment explanation
Indices: 32375261--32375296 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
32375251 ATTCATTTGA
32375261 CATTCATGCATT
1 CATTCATGCATT
32375273 CATTCATGCATT
1 CATTCATGCATT
*
32375285 CATTCATACATT
1 CATTCATGCATT
32375297 GCATAACCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:32375605 original size:12 final size:12
Alignment explanation
Indices: 32375588--32375623 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
32375578 ATTCATTTGA
32375588 CATTCATGCATT
1 CATTCATGCATT
32375600 CATTCATGCATT
1 CATTCATGCATT
*
32375612 CATTCATACATT
1 CATTCATGCATT
32375624 GCATAACCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:32375608 original size:327 final size:327
Alignment explanation
Indices: 32375014--32375667 Score: 1308
Period size: 327 Copynumber: 2.0 Consensus size: 327
32375004 TTTCCACAGT
32375014 TTTTCTCTGTTTATATGTGTTGCGCTAACCAAGGTCGTTTGTCTGTATTTTTATTTTTCATCATG
1 TTTTCTCTGTTTATATGTGTTGCGCTAACCAAGGTCGTTTGTCTGTATTTTTATTTTTCATCATG
32375079 CATCGAAGGTATCTTGTTAGGAAGGTGTTGATTAGAGATTGGTTGCCAAAAACGGGTTTCTAATG
66 CATCGAAGGTATCTTGTTAGGAAGGTGTTGATTAGAGATTGGTTGCCAAAAACGGGTTTCTAATG
32375144 GAGGAGTCAATTATACGAGTGACCAAAACGTTGTGTAATACTCCTTTGATTAAGGAAATGCCTAA
131 GAGGAGTCAATTATACGAGTGACCAAAACGTTGTGTAATACTCCTTTGATTAAGGAAATGCCTAA
32375209 ATAGGGGCTATCTTGAAATTAACACCAAATTTTTGCATATTCATTCATTTGACATTCATGCATTC
196 ATAGGGGCTATCTTGAAATTAACACCAAATTTTTGCATATTCATTCATTTGACATTCATGCATTC
32375274 ATTCATGCATTCATTCATACATTGCATAACCCATACTCGATCGCTGAAGATAAAATATATAATTC
261 ATTCATGCATTCATTCATACATTGCATAACCCATACTCGATCGCTGAAGATAAAATATATAATTC
32375339 GC
326 GC
32375341 TTTTCTCTGTTTATATGTGTTGCGCTAACCAAGGTCGTTTGTCTGTATTTTTATTTTTCATCATG
1 TTTTCTCTGTTTATATGTGTTGCGCTAACCAAGGTCGTTTGTCTGTATTTTTATTTTTCATCATG
32375406 CATCGAAGGTATCTTGTTAGGAAGGTGTTGATTAGAGATTGGTTGCCAAAAACGGGTTTCTAATG
66 CATCGAAGGTATCTTGTTAGGAAGGTGTTGATTAGAGATTGGTTGCCAAAAACGGGTTTCTAATG
32375471 GAGGAGTCAATTATACGAGTGACCAAAACGTTGTGTAATACTCCTTTGATTAAGGAAATGCCTAA
131 GAGGAGTCAATTATACGAGTGACCAAAACGTTGTGTAATACTCCTTTGATTAAGGAAATGCCTAA
32375536 ATAGGGGCTATCTTGAAATTAACACCAAATTTTTGCATATTCATTCATTTGACATTCATGCATTC
196 ATAGGGGCTATCTTGAAATTAACACCAAATTTTTGCATATTCATTCATTTGACATTCATGCATTC
32375601 ATTCATGCATTCATTCATACATTGCATAACCCATACTCGATCGCTGAAGATAAAATATATAATTC
261 ATTCATGCATTCATTCATACATTGCATAACCCATACTCGATCGCTGAAGATAAAATATATAATTC
32375666 GC
326 GC
32375668 AGTTGTAATA
Statistics
Matches: 327, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
327 327 1.00
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (327 bp):
TTTTCTCTGTTTATATGTGTTGCGCTAACCAAGGTCGTTTGTCTGTATTTTTATTTTTCATCATG
CATCGAAGGTATCTTGTTAGGAAGGTGTTGATTAGAGATTGGTTGCCAAAAACGGGTTTCTAATG
GAGGAGTCAATTATACGAGTGACCAAAACGTTGTGTAATACTCCTTTGATTAAGGAAATGCCTAA
ATAGGGGCTATCTTGAAATTAACACCAAATTTTTGCATATTCATTCATTTGACATTCATGCATTC
ATTCATGCATTCATTCATACATTGCATAACCCATACTCGATCGCTGAAGATAAAATATATAATTC
GC
Found at i:32380360 original size:14 final size:15
Alignment explanation
Indices: 32380336--32380368 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
32380326 AAGAATGCTG
32380336 GGGCAACATATCAGA
1 GGGCAACATATCAGA
32380351 GGGC-ACATATCAGA
1 GGGCAACATATCAGA
32380365 GGGC
1 GGGC
32380369 TATGGTGACG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.33, C:0.21, G:0.33, T:0.12
Consensus pattern (15 bp):
GGGCAACATATCAGA
Found at i:32384012 original size:71 final size:69
Alignment explanation
Indices: 32383915--32384088 Score: 215
Period size: 71 Copynumber: 2.5 Consensus size: 69
32383905 TTTTCAAGGG
** *
32383915 AATCAACTCATATTGCGAG-GGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTG
1 AATCAACTCATATTGCGAGAGG-TGAGTTGAGCCTCAAGACACACTGAGGTATTTTTAATTTATG
32383979 TTTTCAA
65 TTTT--A
* ** * *
32383986 AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACACTGAGGTATTTTTAGTTTATGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTATTTTTAATTTATGT
32384051 TTTA
66 TTTA
** *
32384055 AATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
32384089 TTTAATTTTT
Statistics
Matches: 90, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
69 31 0.34
71 58 0.64
72 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (69 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTATTTTTAATTTATGT
TTTA
Found at i:32384209 original size:72 final size:71
Alignment explanation
Indices: 32384088--32384253 Score: 219
Period size: 72 Copynumber: 2.3 Consensus size: 71
32384078 GAGTTAAGCC
** * *
32384088 TTTT-AATTTTTGTTTTTCAAAATCAAGTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACAC
1 TTTTCAATTTTTGTTTTT-AATTTCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGGCACAC
32384152 TGAGGTA
65 TGAGGTA
* *
32384159 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTG-TGAGAGGTGAGTTGAGCCTCAGGTCACG
1 TTTTCAATTTTTGT-TTTTAATTTCAACTCATATTGCT-AGAGGTGAGTTGAGCCTCAGGGCACA
32384223 CTGAGGTA
64 CTGAGGTA
* *
32384231 TTTTCAATTTCTGTTTTCAATTT
1 TTTTCAATTTTTGTTTTTAATTT
32384254 ATGTTGTTCA
Statistics
Matches: 84, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
71 13 0.15
72 67 0.80
73 4 0.05
ACGTcount: A:0.23, C:0.14, G:0.21, T:0.42
Consensus pattern (71 bp):
TTTTCAATTTTTGTTTTTAATTTCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGGCACACT
GAGGTA
Found at i:32384249 original size:13 final size:13
Alignment explanation
Indices: 32384231--32384264 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
32384221 CGCTGAGGTA
*
32384231 TTTTCAATTTCTG
1 TTTTCAATTTATG
32384244 TTTTCAATTTATG
1 TTTTCAATTTATG
32384257 TTGTTCAA
1 TT-TTCAA
32384265 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:32384352 original size:140 final size:140
Alignment explanation
Indices: 32384186--32385233 Score: 1936
Period size: 140 Copynumber: 7.5 Consensus size: 140
32384176 TTAATTTCAA
* *
32384186 CTCATATTGTGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTCAA
32384251 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
32384316 TCAAAATCAG
131 TCAAAATCAG
* **
32384326 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCATGCTGTGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTCAA
32384391 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
32384456 TCAAAATCAG
131 TCAAAATCAG
*
32384466 GTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTCAA
32384531 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
32384596 TCAAAATCAG
131 TCAAAATCAG
*
32384606 CTTATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTCAA
32384671 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
32384736 TCAAAATCAG
131 TCAAAATCAG
*
32384746 CTTATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTCAA
32384811 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
32384876 TCAAAATCAG
131 TCAAAATCAG
*
32384886 CTTATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTCAA
*
32384951 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAAGTTCTACTTTT
66 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
32385016 TCAAAATCAG
131 TCAAAATCAG
*
32385026 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTCAA
32385091 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
32385156 TCAAAATCAG
131 TCAAAATCAG
* *
32385166 CTCATATTGCGAGGGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATTTCTGTCTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTAAGGTATTTTCAATTTCTGT-TT
32385230 TCAA
62 TCAA
32385234 AAAAAAATTG
Statistics
Matches: 890, Mismatches: 14, Indels: 5
0.98 0.02 0.01
Matches are distributed among these distances:
139 2 0.00
140 859 0.97
142 23 0.03
143 6 0.01
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.38
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTCAA
TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:32384389 original size:13 final size:13
Alignment explanation
Indices: 32384371--32384404 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
32384361 TGCTGTGGTA
*
32384371 TTTTCAATTTCTG
1 TTTTCAATTTATG
32384384 TTTTCAATTTATG
1 TTTTCAATTTATG
32384397 TTGTTCAA
1 TT-TTCAA
32384405 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:32384529 original size:13 final size:13
Alignment explanation
Indices: 32384511--32384544 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
32384501 CGCTAAGGTA
*
32384511 TTTTCAATTTCTG
1 TTTTCAATTTATG
32384524 TTTTCAATTTATG
1 TTTTCAATTTATG
32384537 TTGTTCAA
1 TT-TTCAA
32384545 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:32384669 original size:13 final size:13
Alignment explanation
Indices: 32384651--32384684 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
32384641 CGCTAAGGTA
*
32384651 TTTTCAATTTCTG
1 TTTTCAATTTATG
32384664 TTTTCAATTTATG
1 TTTTCAATTTATG
32384677 TTGTTCAA
1 TT-TTCAA
32384685 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:32384809 original size:13 final size:13
Alignment explanation
Indices: 32384791--32384824 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
32384781 CGCTAAGGTA
*
32384791 TTTTCAATTTCTG
1 TTTTCAATTTATG
32384804 TTTTCAATTTATG
1 TTTTCAATTTATG
32384817 TTGTTCAA
1 TT-TTCAA
32384825 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:32384949 original size:13 final size:13
Alignment explanation
Indices: 32384931--32384964 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
32384921 CGCTAAGGTA
*
32384931 TTTTCAATTTCTG
1 TTTTCAATTTATG
32384944 TTTTCAATTTATG
1 TTTTCAATTTATG
32384957 TTGTTCAA
1 TT-TTCAA
32384965 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:32385089 original size:13 final size:13
Alignment explanation
Indices: 32385071--32385104 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
32385061 CGCTGAGGTA
*
32385071 TTTTCAATTTCTG
1 TTTTCAATTTATG
32385084 TTTTCAATTTATG
1 TTTTCAATTTATG
32385097 TTGTTCAA
1 TT-TTCAA
32385105 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:32385331 original size:49 final size:49
Alignment explanation
Indices: 32385259--32385354 Score: 174
Period size: 49 Copynumber: 2.0 Consensus size: 49
32385249 ATATTGCGAG
*
32385259 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
*
32385308 AAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
32385355 GTTAAAAAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (49 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:32385424 original size:123 final size:125
Alignment explanation
Indices: 32385182--32385428 Score: 367
Period size: 123 Copynumber: 2.0 Consensus size: 125
32385172 TTGCGAGGGG
* * *
32385182 TGAGTTGAGCCTCGGTTCACATGCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAATTGAAC
1 TGAGTTGAGCCTCGG-T-ACACGCTGAGGTAATTTCAATTTCTGTCTTT--AAAAAAAATTCAAC
*
32385247 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCAAAA
62 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCAAAA
32385311 TGAGTTGAGCCTCAGG-ACACGCTGAGGTAATTTCAATTTCTGT-TGTT-AAAAAAA-TCAACTC
1 TGAGTTGAGCCTC-GGTACACGCTGAGGTAATTTCAATTTCTGTCT-TTAAAAAAAATTCAACTC
*
32385372 ATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTT
64 ATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
32385429 GTTAAAAAAA
Statistics
Matches: 111, Mismatches: 5, Indels: 10
0.88 0.04 0.08
Matches are distributed among these distances:
123 61 0.55
124 7 0.06
126 1 0.01
127 27 0.24
129 13 0.12
130 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (125 bp):
TGAGTTGAGCCTCGGTACACGCTGAGGTAATTTCAATTTCTGTCTTTAAAAAAAATTCAACTCAT
ATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCAAAA
Found at i:32385429 original size:74 final size:74
Alignment explanation
Indices: 32385308--32386215 Score: 1574
Period size: 74 Copynumber: 12.2 Consensus size: 74
32385298 TTTCTGTTCA
32385308 AAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTTAAAAAAATCAACTCA
1 AAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTTAAAAAAATCAACTCA
32385373 TATTGCGAG
66 TATTGCGAG
32385382 AAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTTAAAAAAATCAACTCA
1 AAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTTAAAAAAATCAACTCA
32385447 TATTGCGAG
66 TATTGCGAG
32385456 AAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTTAAAAAAATCAACTCA
1 AAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTTAAAAAAATCAACTCA
32385521 TATTGCGAG
66 TATTGCGAG
32385530 AAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTTAAAAAAATCAACTCA
1 AAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTTAAAAAAATCAACTCA
32385595 TATTGCGAG
66 TATTGCGAG
32385604 AAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTTAAAAAAATCAACTCA
1 AAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTTAAAAAAATCAACTCA
32385669 TATTGCGAG
66 TATTGCGAG
32385678 AAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTTAAAAAAATCAACTCA
1 AAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTTAAAAAAATCAACTCA
32385743 TATTGCGAG
66 TATTGCGAG
32385752 AAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTTAAAAAAATCAACTCA
1 AAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTTAAAAAAATCAACTCA
32385817 TATTGCGAG
66 TATTGCGAG
32385826 AAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTTAAAAAAATCAACTCA
1 AAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTTAAAAAAATCAACTCA
32385891 TATTGCGAG
66 TATTGCGAG
32385900 AAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTTAAAAAAATCAACTCA
1 AAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTTAAAAAAATCAACTCA
32385965 TATTGCGAG
66 TATTGCGAG
* *
32385974 AAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTT-TT-CAAAATTCAACTCA
1 AAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTTAAAAAAATCAACTCA
32386037 TATTGCGAG
66 TATTGCGAG
* * * * *
32386046 AAATGAGTTGAGCCTCAAGAAACGTTGAGGTATTTTCAATTTCTGTT-TTCAAAAAAATCAACTT
1 AAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTT-AAAAAAATCAACTC
32386110 ATATTGCGAG
65 ATATTGCGAG
** * * * *
32386120 AGGTGAATTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATTTCTGTCT-TTCAAAAAAAATT
1 AAATGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATTTCTGT-TGTT--AAAAAAATC
32386183 AACTCATATTGCGAG
60 AACTCATATTGCGAG
** *
32386198 AGGTGAGTTGAGCTTCAG
1 AAATGAGTTGAGCCTCAG
32386216 ATCACACATT
Statistics
Matches: 805, Mismatches: 21, Indels: 11
0.96 0.03 0.01
Matches are distributed among these distances:
72 66 0.08
73 3 0.00
74 672 0.83
76 24 0.03
77 3 0.00
78 36 0.04
79 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (74 bp):
AAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTTAAAAAAATCAACTCA
TATTGCGAG
Found at i:32388621 original size:883 final size:882
Alignment explanation
Indices: 32386916--32388753 Score: 3588
Period size: 883 Copynumber: 2.1 Consensus size: 882
32386906 ATTTACATCT
32386916 AATTGAACTAAGAATCCATATAAAGAACAAAATTTAAAAAAAAAAAAAAACTACTTGAGAAGCAA
1 AATTGAACTAAGAATCCATATAAAGAACAAAA-TTAAAAAAAAAAAAAAACTACTTGAGAAGCAA
32386981 TACTAAACATGTACCAAGTACATGACCGTCTGTATTTTTCTTAATCTTGAATAGCCATTTACAAC
65 TACTAAACATGTACCAAGTACATGACCGTCTGTATTTTTCTTAATCTTGAATAGCCATTTACAAC
32387046 CTACGAGTGATCTGTCCTAGGGAACTAGCACCAACTCCTATGTCTTATTACAAATTAAAGCATTA
130 CTACGAGTGATCTGTCCTAGGGAACTAGCACCAACTCCTATGTCTTATTACAAATTAAAGCATTA
32387111 AGGTCATCATGAACTGTCACTTGCCATTCTAGAATGCCCATAGCTTCATGAATAATTGTCAGAGT
195 AGGTCATCATGAACTGTCACTTGCCATTCTAGAATGCCCATAGCTTCATGAATAATTGTCAGAGT
32387176 GACAGAGCTAATGGTAGCCACTTACGTTTTCAATTTGAAAATCCCAACCTCACTCTTTATGACCA
260 GACAGAGCTAATGGTAGCCACTTACGTTTTCAATTTGAAAATCCCAACCTCACTCTTTATGACCA
32387241 TCGGATGAGTATTACCAACTACAGGCTGAAGGGCCAAGGCAAAATTGGAGACCTACGGTGTACTA
325 TCGGATGAGTATTACCAACTACAGGCTGAAGGGCCAAGGCAAAATTGGAGACCTACGGTGTACTA
32387306 GGAAAAGAATCACTGTTACGAGTAGAGAAAACCACATCAACAGGCCTCAAACTTTCAGTATGACT
390 GGAAAAGAATCACTGTTACGAGTAGAGAAAACCACATCAACAGGCCTCAAACTTTCAGTATGACT
32387371 AGAACCAACATCAAATTGTGAAGATACTATATCATCAGTATTGGTGGACACTTGTACTATGAAGG
455 AGAACCAACATCAAATTGTGAAGATACTATATCATCAGTATTGGTGGACACTTGTACTATGAAGG
32387436 TGGGACCAGACACGAGAACCAGGACTGGAAGAGTGGTAACCAAAGGGAGACTTTCTGAAGGAATA
520 TGGGACCAGACACGAGAACCAGGACTGGAAGAGTGGTAACCAAAGGGAGACTTTCTGAAGGAATA
32387501 GTAGGAGTTGGCAATATGGACTTGACATTGAGATAACAATTCAACATAAGCTTAATATATTGTAA
585 GTAGGAGTTGGCAATATGGACTTGACATTGAGATAACAATTCAACATAAGCTTAATATATTGTAA
32387566 CTATTTGTAGCATAATCATAACCAGCTAAGCTAACTATTTCAACTTATTCCCATCTTCAATATTT
650 CTATTTGTAGCATAATCATAACCAGCTAAGCTAACTATTTCAACTTATTCCCATCTTCAATATTT
32387631 TGCAACTTCTCTACAGTTGCTAATAAAGAAAATTGCTTAATTTAATTAATTCCTCCTTTTTCTTT
715 TGCAACTTCTCTACAGTTGCTAATAAAGAAAATTGCTTAATTTAATTAATTCCTCCTTTTTCTTT
32387696 TAGTTAATTGAAACAAATTGACCCACAAAGCAAATATCATAGTCAATATCCTCCTGCCCCTCATT
780 TAGTTAATTGAAACAAATTGACCCACAAAGCAAATATCATAGTCAATATCCTCCTGCCCCTCATT
32387761 CGCCTCCACCACTAACTCACCATCCTCCTCTTGCAACA
845 CGCCTCCACCACTAACTCACCATCCTCCTCTTGCAACA
* * ** *
32387799 AATTGAACTAAGAATCCATATAAAGAATCTAAA-GAACAAAACTATAAAAACTACTTGAGAAGCA
1 AATTGAACTAAGAATCCATATAAAGAA-CAAAATTAA-AAAAAAAAAAAAACTACTTGAGAAGCA
32387863 ATACTAAACATGTACCAAGTACATGACCGTCTGTATTTTTCTTAATCTTGAATAGCCATTTACAA
64 ATACTAAACATGTACCAAGTACATGACCGTCTGTATTTTTCTTAATCTTGAATAGCCATTTACAA
32387928 CCTACGAGTGATCTGTCCTAGGGAACTAGCACCAACTCCTATGTCTTATTACAAATTAAAGCATT
129 CCTACGAGTGATCTGTCCTAGGGAACTAGCACCAACTCCTATGTCTTATTACAAATTAAAGCATT
32387993 AAGGTCATCATGAACTGTCACTTGCCATTCTAGAATGCCCATAGCTTCATGAATAATTGTCAGAG
194 AAGGTCATCATGAACTGTCACTTGCCATTCTAGAATGCCCATAGCTTCATGAATAATTGTCAGAG
32388058 TGACAGAGCTAATGGTAGCCACTTACGTTTTCAATTTGAAAATCCCAACCTCACTCTTTATGACC
259 TGACAGAGCTAATGGTAGCCACTTACGTTTTCAATTTGAAAATCCCAACCTCACTCTTTATGACC
32388123 ATCGGATGAGTATTACCAACTACAGGCTGAAGGGCCAAGGCAAAATTGGAGACCTACGGTGTACT
324 ATCGGATGAGTATTACCAACTACAGGCTGAAGGGCCAAGGCAAAATTGGAGACCTACGGTGTACT
32388188 AGGAAAAGAATCACTGTTACGAGTAGAGAAAACCACATCAACAGGCCTCAAACTTTCAGTATGAC
389 AGGAAAAGAATCACTGTTACGAGTAGAGAAAACCACATCAACAGGCCTCAAACTTTCAGTATGAC
32388253 TAGAACCAACATCAAATTGTGAAGATACTATATCATCAGTATTGGTGGACACTTGTACTATGAAG
454 TAGAACCAACATCAAATTGTGAAGATACTATATCATCAGTATTGGTGGACACTTGTACTATGAAG
32388318 GTGGGACCAGACACGAGAACCAGGACTGGAAGAGTGGTAACCAAAGGGAGACTTTCTGAAGGAAT
519 GTGGGACCAGACACGAGAACCAGGACTGGAAGAGTGGTAACCAAAGGGAGACTTTCTGAAGGAAT
32388383 AGTAGGAGTTGGCAATATGGACTTGACATTGAGATAACAATTCAACATAAGCTTAATATATTGTA
584 AGTAGGAGTTGGCAATATGGACTTGACATTGAGATAACAATTCAACATAAGCTTAATATATTGTA
32388448 ACTATTTGTAGCATAATCATAACCAGCTAAGCTAACTATTTCAACTTATTCCCATCTTCAATATT
649 ACTATTTGTAGCATAATCATAACCAGCTAAGCTAACTATTTCAACTTATTCCCATCTTCAATATT
32388513 TTGCAACTTCTCTACAGTTGCTAATAAAGAAAATTGCTTAATTTAATTAATTCCTCCTTTTTCTT
714 TTGCAACTTCTCTACAGTTGCTAATAAAGAAAATTGCTTAATTTAATTAATTCCTCCTTTTTCTT
32388578 TTAGTTAATTGAAACAAATTGACCCACAAAGCAAATATCATAGTCAATATCCTCCTGCCCCTCAT
779 TTAGTTAATTGAAACAAATTGACCCACAAAGCAAATATCATAGTCAATATCCTCCTGCCCCTCAT
32388643 TCGCCTCCACCACTAACTCACCATCCTCCTCTTGCAACA
844 TCGCCTCCACCACTAACTCACCATCCTCCTCTTGCAACA
32388682 AATTGAACTAAGAATCCATATAAAGAACAAAATTTAAAAAAAAAAAAAAACTACTTGAGAAGCAA
1 AATTGAACTAAGAATCCATATAAAGAACAAAA-TTAAAAAAAAAAAAAAACTACTTGAGAAGCAA
32388747 TACTAAA
65 TACTAAA
32388754 TGTAGCTAAC
Statistics
Matches: 941, Mismatches: 10, Indels: 8
0.98 0.01 0.01
Matches are distributed among these distances:
882 6 0.01
883 929 0.99
884 6 0.01
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.28
Consensus pattern (882 bp):
AATTGAACTAAGAATCCATATAAAGAACAAAATTAAAAAAAAAAAAAAACTACTTGAGAAGCAAT
ACTAAACATGTACCAAGTACATGACCGTCTGTATTTTTCTTAATCTTGAATAGCCATTTACAACC
TACGAGTGATCTGTCCTAGGGAACTAGCACCAACTCCTATGTCTTATTACAAATTAAAGCATTAA
GGTCATCATGAACTGTCACTTGCCATTCTAGAATGCCCATAGCTTCATGAATAATTGTCAGAGTG
ACAGAGCTAATGGTAGCCACTTACGTTTTCAATTTGAAAATCCCAACCTCACTCTTTATGACCAT
CGGATGAGTATTACCAACTACAGGCTGAAGGGCCAAGGCAAAATTGGAGACCTACGGTGTACTAG
GAAAAGAATCACTGTTACGAGTAGAGAAAACCACATCAACAGGCCTCAAACTTTCAGTATGACTA
GAACCAACATCAAATTGTGAAGATACTATATCATCAGTATTGGTGGACACTTGTACTATGAAGGT
GGGACCAGACACGAGAACCAGGACTGGAAGAGTGGTAACCAAAGGGAGACTTTCTGAAGGAATAG
TAGGAGTTGGCAATATGGACTTGACATTGAGATAACAATTCAACATAAGCTTAATATATTGTAAC
TATTTGTAGCATAATCATAACCAGCTAAGCTAACTATTTCAACTTATTCCCATCTTCAATATTTT
GCAACTTCTCTACAGTTGCTAATAAAGAAAATTGCTTAATTTAATTAATTCCTCCTTTTTCTTTT
AGTTAATTGAAACAAATTGACCCACAAAGCAAATATCATAGTCAATATCCTCCTGCCCCTCATTC
GCCTCCACCACTAACTCACCATCCTCCTCTTGCAACA
Found at i:32391145 original size:14 final size:16
Alignment explanation
Indices: 32391114--32391145 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
32391104 ATAGTTGTAT
32391114 TTAATTGTTGGATTTA
1 TTAATTGTTGGATTTA
32391130 TTAATTG-TGG-TTTA
1 TTAATTGTTGGATTTA
32391144 TT
1 TT
32391146 GTACTTTATG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 3 0.19
16 7 0.44
ACGTcount: A:0.22, C:0.00, G:0.19, T:0.59
Consensus pattern (16 bp):
TTAATTGTTGGATTTA
Found at i:32393847 original size:17 final size:17
Alignment explanation
Indices: 32393806--32393850 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
32393796 TTATTTATTG
* *
32393806 ATAAAATATAAATATAA
1 ATAAAATTTTAATATAA
*
32393823 TTAAAATTTTAATATAA
1 ATAAAATTTTAATATAA
*
32393840 ATATAATTTTA
1 ATAAAATTTTA
32393851 TTTTGAGATA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
ATAAAATTTTAATATAA
Found at i:32394276 original size:21 final size:21
Alignment explanation
Indices: 32394238--32394277 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
32394228 GAAAACGCGG
* * *
32394238 TTTTGTTTTTTTTCTTTTTTC
1 TTTTGTATTTTGTATTTTTTC
32394259 TTTTGTATTTTGTATTTTT
1 TTTTGTATTTTGTATTTTT
32394278 CCTCAAATTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.05, C:0.05, G:0.07, T:0.82
Consensus pattern (21 bp):
TTTTGTATTTTGTATTTTTTC
Found at i:32395041 original size:15 final size:15
Alignment explanation
Indices: 32395021--32395051 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
32395011 TGGAAACTTG
32395021 AATAACATGTGAAAC
1 AATAACATGTGAAAC
32395036 AATAACATGTGAAAC
1 AATAACATGTGAAAC
32395051 A
1 A
32395052 TCATGTGAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.13, G:0.13, T:0.19
Consensus pattern (15 bp):
AATAACATGTGAAAC
Found at i:32396798 original size:27 final size:27
Alignment explanation
Indices: 32396768--32397203 Score: 490
Period size: 27 Copynumber: 16.1 Consensus size: 27
32396758 AAGTACTTCT
32396768 GATTTACAGAATTACTGTTTTACCCTC
1 GATTTACAGAATTACTGTTTTACCCTC
** * * *
32396795 GATTTTTAAAATTACCGTTTTACCCTT
1 GATTTACAGAATTACTGTTTTACCCTC
*
32396822 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACTGTTTTACCCTC
* *
32396849 -AGTTTATAGAATTACCGTTTTACCCTC
1 GA-TTTACAGAATTACTGTTTTACCCTC
*
32396876 AATTTACAGAATTACTGTTTTACCCTC
1 GATTTACAGAATTACTGTTTTACCCTC
*
32396903 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACTGTTTTACCCTC
* *
32396930 AATTTACAGAATTACTATTTTACCCTC
1 GATTTACAGAATTACTGTTTTACCCTC
*
32396957 GATTTATAGAATTA-TCGTTTTACCCTC
1 GATTTACAGAATTACT-GTTTTACCCTC
** * *
32396984 GATTTGTAAAATTACTATTTTACCCTC
1 GATTTACAGAATTACTGTTTTACCCTC
32397011 GATTTACAGAATTA-TCGTTTTACCCTC
1 GATTTACAGAATTACT-GTTTTACCCTC
* *
32397038 -AGTTTACAGAATTACTATTTTACGCTC
1 GA-TTTACAGAATTACTGTTTTACCCTC
32397065 GATTTACAGAATTA-TCGTTTTACCCTC
1 GATTTACAGAATTACT-GTTTTACCCTC
** * * *
32397092 GATTTGTAAAATTACCGTTTTACCCTT
1 GATTTACAGAATTACTGTTTTACCCTC
*
32397119 GATTTACAGAATTACTGGTTTACCCTC
1 GATTTACAGAATTACTGTTTTACCCTC
*
32397146 -AGTTTACAAAATTA-TCGTTTTACCCTC
1 GA-TTTACAGAATTACT-GTTTTACCCTC
* ** *
32397173 GATTTACAAAATTACCATTTTACCCTT
1 GATTTACAGAATTACTGTTTTACCCTC
32397200 GATT
1 GATT
32397204 GTGAAATTAC
Statistics
Matches: 348, Mismatches: 47, Indels: 28
0.82 0.11 0.07
Matches are distributed among these distances:
26 7 0.02
27 336 0.97
28 5 0.01
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (27 bp):
GATTTACAGAATTACTGTTTTACCCTC
Found at i:32396916 original size:108 final size:108
Alignment explanation
Indices: 32396768--32397203 Score: 552
Period size: 108 Copynumber: 4.0 Consensus size: 108
32396758 AAGTACTTCT
* ** * *
32396768 GATTTACAGAATTACTGTTTTACCCTCGATTTTTAAAATTACCGTTTTACCCT-TGATTTACAGA
1 GATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAG-TTTACAGA
* *
32396832 ATTACCGTTTTACCCTC-AGTTTATAGAATTACCGTTTTACCCTC
65 ATTACCATTTTACCCTCGA-TTTACAGAATTACCGTTTTACCCTC
* * *
32396876 AATTTACAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTACAGAA
1 GATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAA
* * *
32396941 TTACTATTTTACCCTCGATTTATAGAATTATCGTTTTACCCTC
66 TTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTC
** * *
32396984 GATTTGTAAAATTACTATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCAGTTTACAGAA
1 GATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAA
* * *
32397049 TTACTATTTTACGCTCGATTTACAGAATTATCGTTTTACCCTC
66 TTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTC
** * * * * *
32397092 GATTTGTAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGGTTTACCCTCAGTTTACAAAA
1 GATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAA
* * * * *
32397157 TTATCGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTT
66 TTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTC
32397200 GATT
1 GATT
32397204 GTGAAATTAC
Statistics
Matches: 293, Mismatches: 33, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
108 292 1.00
109 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (108 bp):
GATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAA
TTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTC
Found at i:32397238 original size:27 final size:27
Alignment explanation
Indices: 32397208--32397374 Score: 167
Period size: 27 Copynumber: 6.2 Consensus size: 27
32397198 TTGATTGTGA
*
32397208 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
32397235 AATTTCTGAAATACCCCTAT-GAGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
32397261 AATTACTGAAATACCCTTATAGGATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
** *
32397288 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
32397315 AAATA-TCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* * * * *
32397342 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
32397369 AATTAC
1 AATTAC
32397375 CATTTTGCCC
Statistics
Matches: 115, Mismatches: 22, Indels: 6
0.80 0.15 0.04
Matches are distributed among these distances:
26 23 0.20
27 92 0.80
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:32397292 original size:80 final size:81
Alignment explanation
Indices: 32397208--32397359 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 81
32397198 TTGATTGTGA
* * *
32397208 AATTACTAAAATACCCCTGTAGGGTAG-AATTTCTGAAATACCCCTAT-GAGTAGAATTACTGAA
1 AATTACCAAAATACCCCTGTAGGGTAGAAATATC-GAAATACCCCTATAGAGTAGAATTACCGAA
32397271 ATACCCTTATAGGATAG
65 ATACCCTTATAGGATAG
* * * *
32397288 AATTACCAAAATACCCTTGTAGGGTAGAAATATCGAAATACCCCTGTAGGGTAGAATTACCGAGA
1 AATTACCAAAATACCCCTGTAGGGTAGAAATATCGAAATACCCCTATAGAGTAGAATTACCGAAA
32397353 TACCCTT
66 TACCCTT
32397360 GTGGGGTAAA
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
80 37 0.59
81 26 0.41
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (81 bp):
AATTACCAAAATACCCCTGTAGGGTAGAAATATCGAAATACCCCTATAGAGTAGAATTACCGAAA
TACCCTTATAGGATAG
Found at i:32397612 original size:27 final size:26
Alignment explanation
Indices: 32397574--32397656 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
32397564 CGGAGGAAGC
*
32397574 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
32397601 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
32397627 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
32397654 GTT
1 GTT
32397657 GACCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:32397776 original size:22 final size:22
Alignment explanation
Indices: 32397744--32397802 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
32397734 CTCGTTATTA
*
32397744 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
32397766 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
32397788 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
32397803 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:32397989 original size:27 final size:27
Alignment explanation
Indices: 32397967--32398040 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
32397957 TAGGTGGGTT
*
32397967 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
32397994 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
32398021 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
32398041 CAACCATGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:32398206 original size:18 final size:18
Alignment explanation
Indices: 32398183--32398359 Score: 78
Period size: 18 Copynumber: 9.8 Consensus size: 18
32398173 TTGTCAAGTA
*
32398183 ATTCTGATTTTGATTTTG
1 ATTCTGATTCTGATTTTG
* **
32398201 ATTCTG-TTACTAATACTG
1 ATTCTGATT-CTGATTTTG
32398219 ATTCTGATTCTGATTTTG
1 ATTCTGATTCTGATTTTG
* *
32398237 -TTACTGATTCTGATTCTA
1 ATT-CTGATTCTGATTTTG
* * *
32398255 ATTCTG-TCACCTAATTCTG
1 ATTCTGAT--TCTGATTTTG
* *
32398274 ATTCTGATTCTG-TTACTA
1 ATTCTGATTCTGATT-TTG
* *
32398292 ATAT-TGATTTTGATTCTG
1 AT-TCTGATTCTGATTTTG
*
32398310 ATTCTG-TTACTGATTCTG
1 ATTCTGATT-CTGATTTTG
* *
32398328 ATCCTGATTCTCATTTTG
1 ATTCTGATTCTGATTTTG
* **
32398346 GTTCCAATTCTGAT
1 ATTCTGATTCTGAT
32398360 AATATTTCTT
Statistics
Matches: 120, Mismatches: 26, Indels: 26
0.70 0.15 0.15
Matches are distributed among these distances:
17 10 0.08
18 87 0.73
19 22 0.18
20 1 0.01
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (18 bp):
ATTCTGATTCTGATTTTG
Found at i:32398225 original size:6 final size:6
Alignment explanation
Indices: 32398183--32398338 Score: 108
Period size: 6 Copynumber: 25.8 Consensus size: 6
32398173 TTGTCAAGTA
* * * *
32398183 ATTCTG ATTTTG ATTTTG ATTCTG -TTACTA ATACTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG
* * * *
32398231 ATTTTG -TTACTG ATTCTG ATTCTA ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
32398280 ATTCTG -TTACTA ATAT-TG ATTTTG ATTCTG ATTCTG -TTACTG ATTCTG
1 ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG
*
32398328 ATCCTG ATTCT
1 ATTCTG ATTCT
32398339 CATTTTGGTT
Statistics
Matches: 118, Mismatches: 19, Indels: 26
0.72 0.12 0.16
Matches are distributed among these distances:
5 10 0.08
6 98 0.83
7 8 0.07
8 2 0.02
ACGTcount: A:0.21, C:0.15, G:0.13, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:32398292 original size:79 final size:79
Alignment explanation
Indices: 32398193--32398338 Score: 238
Period size: 79 Copynumber: 1.8 Consensus size: 79
32398183 ATTCTGATTT
* * *
32398193 TGATTTTGATTCTGTTACTAATACTGATTCTGATTCTGATTTTGTTACTGATTCTGATTCTAATT
1 TGATTCTGATTCTGTTACTAATACTGATTCTGATTCTGATTCTGTTACTGATTCTGATCCTAATT
32398258 CTGTCACCTAATTC
66 CTGTCACCTAATTC
* * *
32398272 TGATTCTGATTCTGTTACTAATATTGATTTTGATTCTGATTCTGTTACTGATTCTGATCCTGATT
1 TGATTCTGATTCTGTTACTAATACTGATTCTGATTCTGATTCTGTTACTGATTCTGATCCTAATT
32398337 CT
66 CT
32398339 CATTTTGGTT
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
79 61 1.00
ACGTcount: A:0.21, C:0.16, G:0.14, T:0.50
Consensus pattern (79 bp):
TGATTCTGATTCTGTTACTAATACTGATTCTGATTCTGATTCTGTTACTGATTCTGATCCTAATT
CTGTCACCTAATTC
Found at i:32400117 original size:21 final size:20
Alignment explanation
Indices: 32400082--32400130 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
32400072 ATATACACAT
*
32400082 AATTAAAATTATAAAATAT-AA
1 AATTAAAA-CATAAAA-ATCAA
32400103 AATGTAAAACATAAAAATCAA
1 AAT-TAAAACATAAAAATCAA
32400124 AATTAAA
1 AATTAAA
32400131 GATAAAACAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 6 0.24
21 14 0.56
22 5 0.20
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.27
Consensus pattern (20 bp):
AATTAAAACATAAAAATCAA
Found at i:32402654 original size:119 final size:119
Alignment explanation
Indices: 32401957--32402638 Score: 1116
Period size: 119 Copynumber: 5.7 Consensus size: 119
32401947 AGTCTGTTTG
* * * *
32401957 AGAACATCTGAGAGTCAAATCTACTATGTCCTCAATTTGTTTCTTGTAAACACAAGAATGCCAAA
1 AGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAA
* *
32402022 TCATCTTGGATCTTGCTTCAGTATAAATATCTGAAGGTTAGATCTGCTATATCTA
66 TCATCTTGGATC-TGCTTCAGTATAAACATCTGAAGGTTAGATCTTCTATATCTA
32402077 AGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAA
1 AGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAA
* * *
32402142 TCATCTTGGATCTGTTTCAGTCTAAACATCTGAAGGTTAGATCTGT-TATATCTG
66 TCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCT-TCTATATCTA
* * * *
32402196 AGAACATCTAAGAGTCAAATCTTCTATGTCCTCGATTTGTTTCTTGTAAACATAAGAATACCAAA
1 AGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAA
*
32402261 TCATCTTAGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTTCTATATCTA
66 TCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTTCTATATCTA
32402315 AGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAA
1 AGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAA
* * *
32402380 TCATCTTGGATCTGTTTCAGTCTAAACATCTGAAGGTTAGATCTGT-TATATCTG
66 TCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCT-TCTATATCTA
* * * *
32402434 AGAACATCTAAGAGTCAAATCTTCTATGTCCTCGATTTGTTTCTTGTAAACATAAGAATACCAAA
1 AGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAA
*
32402499 TCATCTTAGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTTCTATATCTA
66 TCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTTCTATATCTA
32402553 AGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAA
1 AGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAA
*
32402618 TCATTTTGGATCTGCTTCAGT
66 TCATCTTGGATCTGCTTCAGT
32402639 CTAATTGTCT
Statistics
Matches: 519, Mismatches: 39, Indels: 9
0.92 0.07 0.02
Matches are distributed among these distances:
118 2 0.00
119 443 0.85
120 74 0.14
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34
Consensus pattern (119 bp):
AGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAA
TCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTTCTATATCTA
Found at i:32402654 original size:238 final size:238
Alignment explanation
Indices: 32401955--32402642 Score: 1277
Period size: 238 Copynumber: 2.9 Consensus size: 238
32401945 TGAGTCTGTT
* * * * *
32401955 TGAGAACATCTGAGAGTCAAATCTACTATGTCCTCAATTTGTTTCTTGTAAACACAAGAATGCCA
1 TGAGAACATCTAAGAGTCAAATCTTCTATGTCCTCGATTTGTTTCTTGTAAACATAAGAATACCA
* * *
32402020 AATCATCTTGGATCTTGCTTCAGTATAAATATCTGAAGGTTAGATCTGCTATATCTAAGAACATC
66 AATCATCTTAGATC-TGCTTCAGTATAAACATCTGAAGGTTAGATCTTCTATATCTAAGAACATC
32402085 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTG
130 TGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTG
32402150 GATCTGTTTCAGTCTAAACATCTGAAGGTTAGATCTGTTATATC
195 GATCTGTTTCAGTCTAAACATCTGAAGGTTAGATCTGTTATATC
32402194 TGAGAACATCTAAGAGTCAAATCTTCTATGTCCTCGATTTGTTTCTTGTAAACATAAGAATACCA
1 TGAGAACATCTAAGAGTCAAATCTTCTATGTCCTCGATTTGTTTCTTGTAAACATAAGAATACCA
32402259 AATCATCTTAGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTTCTATATCTAAGAACATCT
66 AATCATCTTAGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTTCTATATCTAAGAACATCT
32402324 GAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTGG
131 GAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTGG
32402389 ATCTGTTTCAGTCTAAACATCTGAAGGTTAGATCTGTTATATC
196 ATCTGTTTCAGTCTAAACATCTGAAGGTTAGATCTGTTATATC
32402432 TGAGAACATCTAAGAGTCAAATCTTCTATGTCCTCGATTTGTTTCTTGTAAACATAAGAATACCA
1 TGAGAACATCTAAGAGTCAAATCTTCTATGTCCTCGATTTGTTTCTTGTAAACATAAGAATACCA
32402497 AATCATCTTAGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTTCTATATCTAAGAACATCT
66 AATCATCTTAGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTTCTATATCTAAGAACATCT
*
32402562 GAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATTTTGG
131 GAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTGG
*
32402627 ATCTGCTTCAGTCTAA
196 ATCTGTTTCAGTCTAA
32402643 TTGTCTGAAG
Statistics
Matches: 439, Mismatches: 10, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
238 366 0.83
239 73 0.17
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34
Consensus pattern (238 bp):
TGAGAACATCTAAGAGTCAAATCTTCTATGTCCTCGATTTGTTTCTTGTAAACATAAGAATACCA
AATCATCTTAGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTTCTATATCTAAGAACATCT
GAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTGG
ATCTGTTTCAGTCTAAACATCTGAAGGTTAGATCTGTTATATC
Found at i:32416389 original size:13 final size:12
Alignment explanation
Indices: 32416361--32416394 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
32416351 ATGTTGAATC
32416361 AAATTAAATAAT
1 AAATTAAATAAT
*
32416373 AAATTAAAGTTAT
1 AAATTAAA-TAAT
32416386 AAATTAAAT
1 AAATTAAAT
32416395 CTTAAATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (12 bp):
AAATTAAATAAT
Found at i:32418256 original size:34 final size:34
Alignment explanation
Indices: 32418193--32418310 Score: 105
Period size: 34 Copynumber: 3.4 Consensus size: 34
32418183 TTGCTTAAAT
* *
32418193 ATAGGCTCGCGTGA-ACCTAGGGTTTACATAACAG
1 ATAGGCTCGCAT-ATACCAAGGGTTTACATAACAG
* *
32418227 ATAGGCTCGCATATACCAATGGTTCACATAAC-G
1 ATAGGCTCGCATATACCAAGGGTTTACATAACAG
* * * * *
32418260 CATAGGCTCACATATTCCTAGGGTTTGCATAACATAT
1 -ATAGGCTCGCATATACCAAGGGTTTACATAAC--AG
32418297 ATAGGCTCGCATAT
1 ATAGGCTCGCATAT
32418311 TCTTAGGGTT
Statistics
Matches: 67, Mismatches: 12, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
33 2 0.03
34 52 0.78
36 13 0.19
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (34 bp):
ATAGGCTCGCATATACCAAGGGTTTACATAACAG
Found at i:32418310 original size:36 final size:36
Alignment explanation
Indices: 32418261--32418336 Score: 118
Period size: 36 Copynumber: 2.1 Consensus size: 36
32418251 CACATAACGC
32418261 ATAGGCTCACATATTCCTAGGGTTTGCAT-AACATAT
1 ATAGGCTCACATATTCCTAGGGTTTGCATGAA-ATAT
* *
32418297 ATAGGCTCGCATATTCTTAGGGTTTGCATGAAATAT
1 ATAGGCTCACATATTCCTAGGGTTTGCATGAAATAT
32418333 ATAG
1 ATAG
32418337 TTTAGGTTCG
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
36 35 0.95
37 2 0.05
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (36 bp):
ATAGGCTCACATATTCCTAGGGTTTGCATGAAATAT
Found at i:32418573 original size:15 final size:14
Alignment explanation
Indices: 32418529--32418573 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
32418519 CTCACACTAA
*
32418529 GGGGTTTGCAC-AG
1 GGGGCTTGCACAAG
*
32418542 AGGGCTTGCACAAG
1 GGGGCTTGCACAAG
*
32418556 GGGGCTTGCACAAA
1 GGGGCTTGCACAAG
32418570 GGGG
1 GGGG
32418574 ATTCCCACTA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
13 9 0.33
14 18 0.67
ACGTcount: A:0.22, C:0.18, G:0.44, T:0.16
Consensus pattern (14 bp):
GGGGCTTGCACAAG
Found at i:32421231 original size:40 final size:41
Alignment explanation
Indices: 32421135--32421239 Score: 126
Period size: 40 Copynumber: 2.6 Consensus size: 41
32421125 TGAATGATGT
*
32421135 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCATAA
* * * *
32421175 CCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTATAA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGTGACCATAA
*
32421215 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
32421240 AATGAGTAGC
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
39 1 0.02
40 46 0.84
41 8 0.15
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (41 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCATAA
Found at i:32423638 original size:9 final size:10
Alignment explanation
Indices: 32423614--32423638 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
32423604 CAAAACATAC
32423614 TAAAAATAAT
1 TAAAAATAAT
32423624 TAAAAATAAT
1 TAAAAATAAT
32423634 TAAAA
1 TAAAA
32423639 CGGCCTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (10 bp):
TAAAAATAAT
Found at i:32428518 original size:19 final size:18
Alignment explanation
Indices: 32428496--32428553 Score: 62
Period size: 19 Copynumber: 3.0 Consensus size: 18
32428486 GAAGTCTAAG
32428496 AAAATAAAAATGAAACAACA
1 AAAATAAAAAT-AAACAA-A
*
32428516 AAAATAAACATAAACATAA
1 AAAATAAAAATAAACA-AA
*
32428535 AAACTAAAAATAAAACAAA
1 AAAATAAAAAT-AAACAAA
32428554 TAAACTCAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
19 17 0.52
20 16 0.48
ACGTcount: A:0.76, C:0.10, G:0.02, T:0.12
Consensus pattern (18 bp):
AAAATAAAAATAAACAAA
Found at i:32428549 original size:13 final size:12
Alignment explanation
Indices: 32428496--32428549 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 12
32428486 GAAGTCTAAG
32428496 AAAATAAAAATGA
1 AAAATAAAAAT-A
*
32428509 AACAACAAAAATA
1 AA-AATAAAAATA
* *
32428522 AACATAAACATA
1 AAAATAAAAATA
32428534 AAAACTAAAAATA
1 AAAA-TAAAAATA
32428547 AAA
1 AAA
32428550 CAAATAAACT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
12 10 0.30
13 15 0.45
14 8 0.24
ACGTcount: A:0.76, C:0.09, G:0.02, T:0.13
Consensus pattern (12 bp):
AAAATAAAAATA
Found at i:32430041 original size:16 final size:15
Alignment explanation
Indices: 32430020--32430055 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
32430010 CTCAGAAGTG
*
32430020 AGAAAAATAATAATGA
1 AGAAAAATAAAAAT-A
32430036 AGAAAAATAAAAATA
1 AGAAAAATAAAAATA
32430051 AGAAA
1 AGAAA
32430056 CAAAGTGGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.75, C:0.00, G:0.11, T:0.14
Consensus pattern (15 bp):
AGAAAAATAAAAATA
Found at i:32430286 original size:18 final size:18
Alignment explanation
Indices: 32430265--32430302 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
32430255 TAAGACGGAA
32430265 AATAA-AATAACAAATAAT
1 AATAACAATAA-AAATAAT
*
32430283 AATAACTATAAAAATAAT
1 AATAACAATAAAAATAAT
32430301 AA
1 AA
32430303 AATTAAGTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (18 bp):
AATAACAATAAAAATAAT
Done.