Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 101 of 310
Found at i:32430369 original size:8 final size:8
Alignment explanation
Indices: 32430356--32430388 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
32430346 AAAGAAAAGA
32430356 AAAATAAT
1 AAAATAAT
32430364 AAAATAAT
1 AAAATAAT
32430372 AAAATAA-
1 AAAATAAT
32430379 AATAATAAT
1 AA-AATAAT
32430388 A
1 A
32430389 GGGAAAATAG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
7 2 0.09
8 20 0.87
9 1 0.04
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AAAATAAT
Found at i:32430379 original size:13 final size:13
Alignment explanation
Indices: 32430361--32430386 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32430351 AAAGAAAAAT
32430361 AATAAAATAATAA
1 AATAAAATAATAA
32430374 AATAAAATAATAA
1 AATAAAATAATAA
32430387 TAGGGAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (13 bp):
AATAAAATAATAA
Found at i:32435270 original size:60 final size:60
Alignment explanation
Indices: 32435195--32435335 Score: 160
Period size: 60 Copynumber: 2.3 Consensus size: 60
32435185 CCAACGGTGT
* * *
32435195 TAATATGGGCAAGGCCCAATATA-TCTCA-ACTTGTAATAGGGCTACGACCCATATTGATAC
1 TAATATGGGCTAGGCCCAATATACTCTCATA-TTGTAA-AGGGCTACGACCCAGATTAATAC
* * * * *
32435255 TAATATGGGCTAGGCCCAGTATACTCTGATATTGTAAGGGGCTATGACCCAGATTAATAT
1 TAATATGGGCTAGGCCCAATATACTCTCATATTGTAAAGGGCTACGACCCAGATTAATAC
*
32435315 TGATATGGGCTAAGGCCCAAT
1 TAATATGGGCT-AGGCCCAAT
32435336 TAACTCTGAT
Statistics
Matches: 68, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
60 49 0.72
61 18 0.26
62 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (60 bp):
TAATATGGGCTAGGCCCAATATACTCTCATATTGTAAAGGGCTACGACCCAGATTAATAC
Found at i:32438543 original size:79 final size:81
Alignment explanation
Indices: 32438434--32438616 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
32438424 TACTCGTTCA
* *
32438434 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
32438497 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
32438514 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
32438577 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
32438593 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
32438617 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:32438616 original size:40 final size:40
Alignment explanation
Indices: 32438413--32438616 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
32438403 CGGAATTTAA
** *
32438413 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
32438453 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
32438493 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
32438532 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
32438572 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
32438612 CCGGA
1 CCGGA
32438617 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:32449142 original size:19 final size:19
Alignment explanation
Indices: 32449099--32449159 Score: 77
Period size: 19 Copynumber: 3.1 Consensus size: 19
32449089 GTTATATATA
*
32449099 TATATTTTTGTATATTATG
1 TATATTTTTATATATTATG
*
32449118 TCTATATTTTAATATATTATG
1 --TATATTTTTATATATTATG
*
32449139 TATATTTTTATATATCATG
1 TATATTTTTATATATTATG
32449158 TA
1 TA
32449160 CATATTATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
19 19 0.53
21 17 0.47
ACGTcount: A:0.31, C:0.03, G:0.07, T:0.59
Consensus pattern (19 bp):
TATATTTTTATATATTATG
Found at i:32449164 original size:21 final size:20
Alignment explanation
Indices: 32449100--32449165 Score: 80
Period size: 21 Copynumber: 3.2 Consensus size: 20
32449090 TTATATATAT
*
32449100 ATATTTTTGTATATTATGTC
1 ATATTTTTATATATTATGTC
*
32449120 TATATTTTAATATATTATGT-
1 -ATATTTTTATATATTATGTC
*
32449140 ATATTTTTATATATCATGTAC
1 ATATTTTTATATATTATGT-C
32449161 ATATT
1 ATATT
32449166 ATGTACATAC
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
19 17 0.44
21 22 0.56
ACGTcount: A:0.32, C:0.05, G:0.06, T:0.58
Consensus pattern (20 bp):
ATATTTTTATATATTATGTC
Found at i:32449516 original size:3 final size:3
Alignment explanation
Indices: 32449501--32449614 Score: 56
Period size: 3 Copynumber: 39.0 Consensus size: 3
32449491 GCATTATTTG
* * * * * * *
32449501 TAT TAT CAT TAT TAT TAT TAC TAA TAT TAA TAT TCT TA- TAT GAC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * *
32449548 TAT TAT TAT CAT TAG TAT TAT CA- TAT T-T TAC CAC TAT TAT CAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
32449594 T-T ATAT TAC TAT TAT TAT TAT
1 TAT -TAT TAT TAT TAT TAT TAT
32449615 CGTTTTCGTT
Statistics
Matches: 79, Mismatches: 27, Indels: 10
0.68 0.23 0.09
Matches are distributed among these distances:
2 6 0.08
3 72 0.91
4 1 0.01
ACGTcount: A:0.34, C:0.10, G:0.02, T:0.54
Consensus pattern (3 bp):
TAT
Found at i:32449645 original size:19 final size:19
Alignment explanation
Indices: 32449623--32449664 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
32449613 ATCGTTTTCG
*
32449623 TTATCATTGTCAT-TTTTTT
1 TTAT-ATTGTCATGTTTTGT
*
32449642 TTATTTTGTCATGTTTTGT
1 TTATATTGTCATGTTTTGT
32449661 TTAT
1 TTAT
32449665 TTTTATTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.14, C:0.07, G:0.10, T:0.69
Consensus pattern (19 bp):
TTATATTGTCATGTTTTGT
Found at i:32449650 original size:18 final size:19
Alignment explanation
Indices: 32449629--32449667 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
32449619 TTCGTTATCA
*
32449629 TTGTCAT-TTTTTTTTATT
1 TTGTCATGTTTTGTTTATT
32449647 TTGTCATGTTTTGTTTATT
1 TTGTCATGTTTTGTTTATT
32449666 TT
1 TT
32449668 TATTTATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.10, C:0.05, G:0.10, T:0.74
Consensus pattern (19 bp):
TTGTCATGTTTTGTTTATT
Found at i:32450775 original size:12 final size:11
Alignment explanation
Indices: 32450758--32450802 Score: 56
Period size: 11 Copynumber: 4.0 Consensus size: 11
32450748 AATTAGAATG
*
32450758 TAAAAATTAAAC
1 TAAAAA-TAAAA
32450770 TAAAAATAAAA
1 TAAAAATAAAA
32450781 TAAAAAGTAAAA
1 TAAAAA-TAAAA
32450793 T-AAAATAAAA
1 TAAAAATAAAA
32450803 ATGGCTAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
10 5 0.16
11 14 0.45
12 12 0.39
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (11 bp):
TAAAAATAAAA
Found at i:32454282 original size:40 final size:40
Alignment explanation
Indices: 32454232--32454324 Score: 116
Period size: 40 Copynumber: 2.3 Consensus size: 40
32454222 ATCTTGGTCT
* * *
32454232 CGCACACTAAGTGTCATATATAACTGAAGTTAT-TCCGATA
1 CGCACACTAAGTGTCATATATAACCGAAGCTATCT-CGAAA
* *
32454272 CGCACACTAAGTGTTATATATAGCCGAAGCTATCTCGAAA
1 CGCACACTAAGTGTCATATATAACCGAAGCTATCTCGAAA
*
32454312 CGTACACTAAGTG
1 CGCACACTAAGTG
32454325 CCAAACATAG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 45 0.98
41 1 0.02
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (40 bp):
CGCACACTAAGTGTCATATATAACCGAAGCTATCTCGAAA
Found at i:32457847 original size:20 final size:18
Alignment explanation
Indices: 32457824--32457866 Score: 59
Period size: 20 Copynumber: 2.3 Consensus size: 18
32457814 GTTTTTGAAG
32457824 AAATTTTTTTTATTTTCAAA
1 AAATTTTTTTTA-TTT-AAA
*
32457844 AAATATTTTTTATTTAAA
1 AAATTTTTTTTATTTAAA
32457862 AAATT
1 AAATT
32457867 GAGAACATCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 7 0.33
19 3 0.14
20 11 0.52
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (18 bp):
AAATTTTTTTTATTTAAA
Found at i:32463973 original size:74 final size:74
Alignment explanation
Indices: 32463800--32464358 Score: 653
Period size: 74 Copynumber: 7.4 Consensus size: 74
32463790 ATTAAAAGGT
* * ** * * *
32463800 TCAACCCACCTCTCGCAACATGAGTTGATTTTTTG-AAAGTAGAATTTGAAAATACCTCGGCGTG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTG
* *
32463864 CCCCGAGGC
66 TCCTGAGGC
*
32463873 TCAACTCACCTATCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTG
32463937 TCCATGAGGC
66 TCC-TGAGGC
*
32463947 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACATAAATTGAACAGGAATTGAAAAT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAC----A--G---A--AATTGAAATT
* * *
32464011 ACCTCAACATGTCTTGAGGC
55 ACCTCAGCGTGTCCTGAGGC
* * **
32464031 TCAACTCACCTCTCGCAATATGAGTTGATTTTCTTGAAAAGCAGAAATTGAAAATACCTCAATGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTT-TTGAAAAACAGAAATTGAAATTACCTCAGCGT
*
32464096 GTCTTGAGGC
65 GTCCTGAGGC
* * *
32464106 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-ACAATAGAAATTGAAATTACCTCAGCAT
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTGAAATTACCTCAGCGT
32464170 GTCCTGAGGC
65 GTCCTGAGGC
** ** * *
32464180 TCAACTCATTTCTCGCAATATGAGTTGA-AATTTGGAAAACAAAAATTGAAATTACCTCAGCGTG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTG
32464244 TCCTGAGGC
66 TCCTGAGGC
** *
32464253 TCAACTCATTTCTCGCAATATGAGTTGATTTTTTTG-ACAACAGAAATTGAAATTACCTCAGCGT
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTGAAATTACCTCAGCGT
32464317 GTCCTGAGGC
65 GTCCTGAGGC
*
32464327 TCAACTCACCTCTAGCAATATGAGTTGATTTT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTT
32464359 GAAAAATAAA
Statistics
Matches: 426, Mismatches: 41, Indels: 38
0.84 0.08 0.08
Matches are distributed among these distances:
72 10 0.02
73 117 0.27
74 161 0.38
75 63 0.15
76 4 0.01
77 1 0.00
78 1 0.00
80 2 0.00
82 1 0.00
83 1 0.00
84 34 0.08
85 23 0.05
86 8 0.02
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (74 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTG
TCCTGAGGC
Found at i:32464280 original size:147 final size:147
Alignment explanation
Indices: 32463995--32464376 Score: 543
Period size: 147 Copynumber: 2.6 Consensus size: 147
32463985 ACATAAATTG
* * * * *
32463995 AACAGGAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
* * * *
32464060 TTTCTTGAAAAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
66 TTT-TGGAAAA-CAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
32464125 ATGAGTTGATTTTTTTGAC
129 ATGAGTTGATTTTTTTGAC
* **
32464144 AATAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
* * * **
32464209 ATTTGGAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATAT
66 TTTTGGAAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
32464274 GAGTTGATTTTTTTGAC
131 GAGTTGATTTTTTTGAC
* *
32464291 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTG-A
1 AACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
* *
32464355 TTTTGAAAAATAAAAATT-AAAA
66 TTTTGGAAAACAAAAATTGAAAA
32464377 GGCTTAACTC
Statistics
Matches: 207, Mismatches: 26, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
145 3 0.01
146 16 0.08
147 123 0.59
148 6 0.03
149 59 0.29
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.30
Consensus pattern (147 bp):
AACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
TTTTGGAAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTTTTGAC
Found at i:32464590 original size:72 final size:72
Alignment explanation
Indices: 32464376--32464835 Score: 500
Period size: 72 Copynumber: 6.4 Consensus size: 72
32464366 AAAAATTAAA
* * * * * *
32464376 AGGCTTAACTCACTTCTCGCAATATGAGTCA-A-TTT-AAAACATA-AACTAAAAATACCTCGGT
1 AGGCTTGACTCACCTCTCGCAATATGAGT-AGATTTTGAAAACATAGAAATTAAAATACCTCAGC
* *
32464437 GTGCCCCG
65 GTGACCTG
** * * *
32464445 AGGCTCAACTCACCCCTCGCAATATGAGCT-GATTTTTG-AAACAAAAGGAATTAAAATACCTCA
1 AGGCTTGACTCACCTCTCGCAATATGAG-TAGA-TTTTGAAAAC-ATAGAAATTAAAATACCTCA
32464508 GCGTGACCTG
63 GCGTGACCTG
32464518 AGGCTTGACTCACCTCTCGCAATATGAGCT-GATTTTGAAAA-AGTAGAAATTAAAATACCTCAG
1 AGGCTTGACTCACCTCTCGCAATATGAG-TAGATTTTGAAAACA-TAGAAATTAAAATACCTCAG
32464581 CGTGACCTG
64 CGTGACCTG
* *
32464590 AGGCTTGACTCACCTCTCGCAATATGAGTCA-ATTTTTG-AAACATA-AACTAAAAATACCTCAG
1 AGGCTTGACTCACCTCTCGCAATATGAGT-AGA-TTTTGAAAACATAGAAATTAAAATACCTCAG
32464652 CGTGTGACCTG
64 C--GTGACCTG
** ** *
32464663 AGGCTCAACTCATTTCTCGCAATATGAGTTAAGTTTTTGAAAACAT-G-AATTAAAATACCTCAG
1 AGGCTTGACTCACCTCTCGCAATATGAG-T-AGATTTTGAAAACATAGAAATTAAAATACCTCAG
32464726 CGTGACCTG
64 CGTGACCTG
*
32464735 AGGCTTGACTCACCTCTCGCAATATGAGTTAAGTTTTTGAAAACAT-G-AATTAAAATACCTCAG
1 AGGCTTGACTCACCTCTCGCAATATGAG-T-AGATTTTGAAAACATAGAAATTAAAATACCTCAG
32464798 CGTGACCTG
64 CGTGACCTG
32464807 AGGCTTGACTCACCTCTCGCAATATGAGT
1 AGGCTTGACTCACCTCTCGCAATATGAGT
32464836 CAATTTTCCT
Statistics
Matches: 342, Mismatches: 30, Indels: 36
0.84 0.07 0.09
Matches are distributed among these distances:
69 26 0.08
70 1 0.00
71 26 0.08
72 172 0.50
73 89 0.26
74 22 0.06
75 6 0.02
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (72 bp):
AGGCTTGACTCACCTCTCGCAATATGAGTAGATTTTGAAAACATAGAAATTAAAATACCTCAGCG
TGACCTG
Found at i:32464659 original size:145 final size:141
Alignment explanation
Indices: 32464376--32464835 Score: 545
Period size: 145 Copynumber: 3.2 Consensus size: 141
32464366 AAAAATTAAA
* * * * * * *
32464376 AGGCTTAACTCACTTCTCGCAATATGAGTCAATTT-AAAACATA-AACTAAAAATACCTCGGTGT
1 AGGCTTAACTCACCTCTCGCAATATGAGTGATTTTGAAAACATAGAAATTAAAATACCTCAGCGT
* * ** * * *
32464439 GCCCCGAGGCTCAACTCACCCCTCGCAATATGAG-CTGATTTTTGAAACAAAAGGAATTAAAATA
66 GACCTGAGGCTTGACTCACCTCTCGCAATATGAGTC-AATTTTTGAAAC-ATA--AATTAAAATA
32464503 CCTCAGCGTGACCTG
127 CCTCAGCGTGACCTG
*
32464518 AGGCTTGACTCACCTCTCGCAATATGAGCTGATTTTGAAAA-AGTAGAAATTAAAATACCTCAGC
1 AGGCTTAACTCACCTCTCGCAATATGAG-TGATTTTGAAAACA-TAGAAATTAAAATACCTCAGC
*
32464582 GTGACCTGAGGCTTGACTCACCTCTCGCAATATGAGTCAATTTTTGAAACATAAACTAAAAATAC
64 GTGACCTGAGGCTTGACTCACCTCTCGCAATATGAGTCAATTTTTGAAACATAAA-TTAAAATAC
32464647 CTCAGCGTGTGACCTG
128 CTCAGC--GTGACCTG
* ** *
32464663 AGGCTCAACTCATTTCTCGCAATATGAGTTAAGTTTTTGAAAACAT-G-AATTAAAATACCTCAG
1 AGGCTTAACTCACCTCTCGCAATATGAG-T--GATTTTGAAAACATAGAAATTAAAATACCTCAG
* *
32464726 CGTGACCTGAGGCTTGACTCACCTCTCGCAATATGAGTTAAGTTTTTGAAAACATGAATTAAAAT
63 CGTGACCTGAGGCTTGACTCACCTCTCGCAATATGAGTCAA-TTTTTG-AAACATAAATTAAAAT
32464791 ACCTCAGCGTGACCTG
126 ACCTCAGCGTGACCTG
*
32464807 AGGCTTGACTCACCTCTCGCAATATGAGT
1 AGGCTTAACTCACCTCTCGCAATATGAGT
32464836 CAATTTTCCT
Statistics
Matches: 276, Mismatches: 29, Indels: 25
0.84 0.09 0.08
Matches are distributed among these distances:
142 28 0.10
143 21 0.08
144 40 0.14
145 145 0.53
146 22 0.08
147 19 0.07
148 1 0.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (141 bp):
AGGCTTAACTCACCTCTCGCAATATGAGTGATTTTGAAAACATAGAAATTAAAATACCTCAGCGT
GACCTGAGGCTTGACTCACCTCTCGCAATATGAGTCAATTTTTGAAACATAAATTAAAATACCTC
AGCGTGACCTG
Found at i:32464762 original size:217 final size:215
Alignment explanation
Indices: 32464376--32464842 Score: 703
Period size: 217 Copynumber: 2.2 Consensus size: 215
32464366 AAAAATTAAA
* *
32464376 AGGCTTAACTCACTTCTCGCAATATGAGTCAA--TTTAAAACATAAACTAAAAATACCTCGGTGT
1 AGGCTTGACTCACCTCTCGCAATATGAGTCAATTTTTAAAACATAAACTAAAAATACCTCGGTGT
* *
32464439 GCCCCGAGGCTCAACTCACCCCTCGCAATATGAGCTGATTTTTGAAACAAAAGGAATTAAAATAC
66 GACCCGAGGCTCAACTCACCCCTCGCAATATGAGCTAATTTTTGAAACAAAAGGAATTAAAATAC
32464504 CTCAGCGTGACCTGAGGCTTGACTCACCTCTCGCAATATGAGCT-GATTTTGAAAA-AGTAGAAA
131 CTCAGCGTGACCTGAGGCTTGACTCACCTCTCGCAATATGAGCTAGATTTTGAAAACA-T-G-AA
32464567 TTAAAATACCTCAGCGTGACCTG
193 TTAAAATACCTCAGCGTGACCTG
*
32464590 AGGCTTGACTCACCTCTCGCAATATGAGTCAATTTTTGAAACATAAACTAAAAATACCTCAGCGT
1 AGGCTTGACTCACCTCTCGCAATATGAGTCAATTTTTAAAACATAAACTAAAAATACCTC-G-GT
* *** * * *
32464655 GTGACCTGAGGCTCAACTCATTTCTCGCAATATGAGTTAAGTTTTTG-AA-AACATGAATTAAAA
64 GTGACCCGAGGCTCAACTCACCCCTCGCAATATGAGCTAA-TTTTTGAAACAAAAGGAATTAAAA
* *
32464718 TACCTCAGCGTGACCTGAGGCTTGACTCACCTCTCGCAATATGAGTTAAGTTTTTGAAAACATGA
128 TACCTCAGCGTGACCTGAGGCTTGACTCACCTCTCGCAATATGAGCT-AGATTTTGAAAACATGA
32464783 ATTAAAATACCTCAGCGTGACCTG
192 ATTAAAATACCTCAGCGTGACCTG
32464807 AGGCTTGACTCACCTCTCGCAATATGAGTCAATTTT
1 AGGCTTGACTCACCTCTCGCAATATGAGTCAATTTT
32464843 CCTTGGAAAG
Statistics
Matches: 231, Mismatches: 14, Indels: 13
0.90 0.05 0.05
Matches are distributed among these distances:
214 30 0.13
216 25 0.11
217 120 0.52
218 38 0.16
219 17 0.07
220 1 0.00
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (215 bp):
AGGCTTGACTCACCTCTCGCAATATGAGTCAATTTTTAAAACATAAACTAAAAATACCTCGGTGT
GACCCGAGGCTCAACTCACCCCTCGCAATATGAGCTAATTTTTGAAACAAAAGGAATTAAAATAC
CTCAGCGTGACCTGAGGCTTGACTCACCTCTCGCAATATGAGCTAGATTTTGAAAACATGAATTA
AAATACCTCAGCGTGACCTG
Found at i:32477033 original size:21 final size:21
Alignment explanation
Indices: 32477007--32477052 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
32476997 AGAAACATGT
32477007 ATATAATAGTGTAAAAGAAAA
1 ATATAATAGTGTAAAAGAAAA
32477028 ATATAATAGTGTAAAAGAAAA
1 ATATAATAGTGTAAAAGAAAA
32477049 ATAT
1 ATAT
32477053 GACAAGTAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.61, C:0.00, G:0.13, T:0.26
Consensus pattern (21 bp):
ATATAATAGTGTAAAAGAAAA
Found at i:32477061 original size:20 final size:21
Alignment explanation
Indices: 32477007--32477061 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 21
32476997 AGAAACATGT
* *
32477007 ATATAATAGTGTAAAAGAAAA
1 ATATAACAGAGTAAAAGAAAA
* *
32477028 ATATAATAGTGTAAAAGAAAA
1 ATATAACAGAGTAAAAGAAAA
*
32477049 ATATGACA-AGTAA
1 ATATAACAGAGTAA
32477062 GACTAAAATA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
20 4 0.13
21 27 0.87
ACGTcount: A:0.60, C:0.02, G:0.15, T:0.24
Consensus pattern (21 bp):
ATATAACAGAGTAAAAGAAAA
Found at i:32477125 original size:26 final size:27
Alignment explanation
Indices: 32477065--32477138 Score: 73
Period size: 26 Copynumber: 2.7 Consensus size: 27
32477055 CAAGTAAGAC
*
32477065 TAAAATATATATATAATAATATAAAAAG
1 TAAAATA-AAATATAATAATATAAAAAG
* *
32477093 T-AGATAAAATATAATGATATAAAAA-
1 TAAAATAAAATATAATAATATAAAAAG
32477118 TAAAATAAGAATA-AAGTAATA
1 TAAAATAA-AATATAA-TAATA
32477139 GGTAATAATA
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
25 1 0.03
26 24 0.63
27 12 0.32
28 1 0.03
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (27 bp):
TAAAATAAAATATAATAATATAAAAAG
Found at i:32477132 original size:32 final size:31
Alignment explanation
Indices: 32477045--32477132 Score: 81
Period size: 34 Copynumber: 2.7 Consensus size: 31
32477035 AGTGTAAAAG
*
32477045 AAAAATATGACAAGTAAGACTAAAATATATATAT
1 AAAAATAT-A-AA-TAAGAATAAAATATATATAT
*
32477079 AATAATATAAA-AAGTAGATAAAATATAATGATAT
1 AAAAATATAAATAAG-A-ATAAAATAT-AT-ATAT
32477113 AAAAATA-AAATAAGAATAAA
1 AAAAATATAAATAAGAATAAA
32477133 GTAATAGGTA
Statistics
Matches: 46, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
30 3 0.07
31 1 0.02
32 15 0.33
33 7 0.15
34 20 0.43
ACGTcount: A:0.65, C:0.02, G:0.08, T:0.25
Consensus pattern (31 bp):
AAAAATATAAATAAGAATAAAATATATATAT
Found at i:32478235 original size:16 final size:16
Alignment explanation
Indices: 32478214--32478245 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
32478204 TTTTGTGTAA
*
32478214 TGGGCTGTTAGTTTAG
1 TGGGCTGGTAGTTTAG
32478230 TGGGCTGGTAGTTTAG
1 TGGGCTGGTAGTTTAG
32478246 GTTATTGGGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.12, C:0.06, G:0.41, T:0.41
Consensus pattern (16 bp):
TGGGCTGGTAGTTTAG
Found at i:32479272 original size:74 final size:74
Alignment explanation
Indices: 32479099--32479657 Score: 653
Period size: 74 Copynumber: 7.4 Consensus size: 74
32479089 ATTAAAAGGT
* * ** * * *
32479099 TCAACCCACCTCTCGCAACATGAGTTGATTTTTTG-AAAGTAGAATTTGAAAATACCTCGGCGTG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTG
* *
32479163 CCCCGAGGC
66 TCCTGAGGC
*
32479172 TCAACTCACCTATCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTG
32479236 TCCATGAGGC
66 TCC-TGAGGC
*
32479246 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACATAAATTGAACAGGAATTGAAAAT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAC----A--G---A--AATTGAAATT
* * *
32479310 ACCTCAACATGTCTTGAGGC
55 ACCTCAGCGTGTCCTGAGGC
* * **
32479330 TCAACTCACCTCTCGCAATATGAGTTGATTTTCTTGAAAAGCAGAAATTGAAAATACCTCAATGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTT-TTGAAAAACAGAAATTGAAATTACCTCAGCGT
*
32479395 GTCTTGAGGC
65 GTCCTGAGGC
* * *
32479405 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-ACAATAGAAATTGAAATTACCTCAGCAT
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTGAAATTACCTCAGCGT
32479469 GTCCTGAGGC
65 GTCCTGAGGC
** ** * *
32479479 TCAACTCATTTCTCGCAATATGAGTTGA-AATTTGGAAAACAAAAATTGAAATTACCTCAGCGTG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTG
32479543 TCCTGAGGC
66 TCCTGAGGC
** *
32479552 TCAACTCATTTCTCGCAATATGAGTTGATTTTTTTG-ACAACAGAAATTGAAATTACCTCAGCGT
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTGAAATTACCTCAGCGT
32479616 GTCCTGAGGC
65 GTCCTGAGGC
*
32479626 TCAACTCACCTCTAGCAATATGAGTTGATTTT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTT
32479658 GAAAAATAAA
Statistics
Matches: 426, Mismatches: 41, Indels: 38
0.84 0.08 0.08
Matches are distributed among these distances:
72 10 0.02
73 117 0.27
74 161 0.38
75 63 0.15
76 4 0.01
77 1 0.00
78 1 0.00
80 2 0.00
82 1 0.00
83 1 0.00
84 34 0.08
85 23 0.05
86 8 0.02
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (74 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTG
TCCTGAGGC
Found at i:32479579 original size:147 final size:147
Alignment explanation
Indices: 32479294--32479675 Score: 543
Period size: 147 Copynumber: 2.6 Consensus size: 147
32479284 ACATAAATTG
* * * * *
32479294 AACAGGAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
* * * *
32479359 TTTCTTGAAAAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
66 TTT-TGGAAAA-CAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
32479424 ATGAGTTGATTTTTTTGAC
129 ATGAGTTGATTTTTTTGAC
* **
32479443 AATAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
* * * **
32479508 ATTTGGAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATAT
66 TTTTGGAAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
32479573 GAGTTGATTTTTTTGAC
131 GAGTTGATTTTTTTGAC
* *
32479590 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTG-A
1 AACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
* *
32479654 TTTTGAAAAATAAAAATT-AAAA
66 TTTTGGAAAACAAAAATTGAAAA
32479676 GGCTTAACTC
Statistics
Matches: 207, Mismatches: 26, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
145 3 0.01
146 16 0.08
147 123 0.59
148 6 0.03
149 59 0.29
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.30
Consensus pattern (147 bp):
AACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
TTTTGGAAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTTTTGAC
Found at i:32479828 original size:73 final size:71
Alignment explanation
Indices: 32479675--32479997 Score: 323
Period size: 73 Copynumber: 4.5 Consensus size: 71
32479665 AAAAATTAAA
* * * * * * * *
32479675 AGGCTTAACTCACTTCTCGCAATATGAGTCAA--TTTAAAACATAA-ACTAAAAATACCTCGGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGT-AATTTTTGAAACAAAAGAATTAAAATACCTCAGCG
* *
32479737 TGCCCCG
65 TGACCTG
* *
32479744 AGGCTCAACTCACCCCTCGCAATATGAGCTGATTTTTGAAACAAAAGGAATTAAAATACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAG-TAATTTTTGAAACAAAA-GAATTAAAATACCTCAGC
32479809 GTGACCTG
64 GTGACCTG
** * * *
32479817 AGGCTTGACTCACCTCTCGCAATATGAGTCAATTTTTGAAACATAA-ACTAAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGT-AATTTTTGAAACAAAAGAATTAAAATACCTCAGC-
32479881 TGTGACCTG
64 -GTGACCTG
** * *
32479890 AGGCTCAACTCATTTCTCGCAATATGAGTTAAGTTTTTGAAA-ACATGAATTAAAATACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAG-TAA-TTTTTGAAACAAAAGAATTAAAATACCTCAGC
32479954 GTGACCTG
64 GTGACCTG
**
32479962 AGGCTTGACTCACCTCTCGCAATATGAGTCAATTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGT-AATTTT
32479998 CCTTGGAAAG
Statistics
Matches: 211, Mismatches: 31, Indels: 22
0.80 0.12 0.08
Matches are distributed among these distances:
69 26 0.12
70 1 0.00
71 30 0.14
72 35 0.17
73 94 0.45
74 25 0.12
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTAATTTTTGAAACAAAAGAATTAAAATACCTCAGCGT
GACCTG
Found at i:32479966 original size:145 final size:144
Alignment explanation
Indices: 32479675--32479997 Score: 483
Period size: 145 Copynumber: 2.2 Consensus size: 144
32479665 AAAAATTAAA
* *
32479675 AGGCTTAACTCACTTCTCGCAATATGAGTCAA--TTTAAAACATAAACTAAAAATACCTCGGTGT
1 AGGCTTGACTCACCTCTCGCAATATGAGTCAATTTTTAAAACATAAACTAAAAATACCTCGGTGT
* *
32479738 GCCCCGAGGCTCAACTCACCCCTCGCAATATGAGCTGATTTTTGAAACAAAAGGAATTAAAATAC
66 GACCCGAGGCTCAACTCACCCCTCGCAATATGAGCTAATTTTTGAAACAAAAGGAATTAAAATAC
32479803 CTCAGCGTGACCTG
131 CTCAGCGTGACCTG
*
32479817 AGGCTTGACTCACCTCTCGCAATATGAGTCAATTTTTGAAACATAAACTAAAAATACCTCAGCGT
1 AGGCTTGACTCACCTCTCGCAATATGAGTCAATTTTTAAAACATAAACTAAAAATACCTC-G-GT
* *** * * *
32479882 GTGACCTGAGGCTCAACTCATTTCTCGCAATATGAGTTAAGTTTTTG-AA-AACATGAATTAAAA
64 GTGACCCGAGGCTCAACTCACCCCTCGCAATATGAGCTAA-TTTTTGAAACAAAAGGAATTAAAA
32479945 TACCTCAGCGTGACCTG
128 TACCTCAGCGTGACCTG
32479962 AGGCTTGACTCACCTCTCGCAATATGAGTCAATTTT
1 AGGCTTGACTCACCTCTCGCAATATGAGTCAATTTT
32479998 CCTTGGAAAG
Statistics
Matches: 164, Mismatches: 12, Indels: 7
0.90 0.07 0.04
Matches are distributed among these distances:
142 30 0.18
144 25 0.15
145 66 0.40
146 37 0.23
147 6 0.04
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (144 bp):
AGGCTTGACTCACCTCTCGCAATATGAGTCAATTTTTAAAACATAAACTAAAAATACCTCGGTGT
GACCCGAGGCTCAACTCACCCCTCGCAATATGAGCTAATTTTTGAAACAAAAGGAATTAAAATAC
CTCAGCGTGACCTG
Found at i:32482838 original size:23 final size:23
Alignment explanation
Indices: 32482808--32482852 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
32482798 AGGAGGATCT
*
32482808 GCCATCGTGCCATTCTTCCTGAC
1 GCCATCGTGCCATTCATCCTGAC
32482831 GCCATCGTGCCATTCATCCTGA
1 GCCATCGTGCCATTCATCCTGA
32482853 TAGTGCCGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.16, C:0.38, G:0.18, T:0.29
Consensus pattern (23 bp):
GCCATCGTGCCATTCATCCTGAC
Found at i:32492256 original size:37 final size:37
Alignment explanation
Indices: 32492215--32492287 Score: 96
Period size: 37 Copynumber: 2.0 Consensus size: 37
32492205 AAAATATGAC
* *
32492215 AAGTAAGACTAAAATAT-AT-ATATAATAATAATATAAA
1 AAGT-AGA-TAAAATATAATGATATAAAAATAAAATAAA
32492252 AAGTAGATAAAATATAATGATATAAAAATAAAATAA
1 AAGTAGATAAAATATAATGATATAAAAATAAAATAA
32492288 GAATAAAGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
35 8 0.25
36 5 0.16
37 19 0.59
ACGTcount: A:0.64, C:0.01, G:0.07, T:0.27
Consensus pattern (37 bp):
AAGTAGATAAAATATAATGATATAAAAATAAAATAAA
Found at i:32492287 original size:26 final size:27
Alignment explanation
Indices: 32492239--32492300 Score: 67
Period size: 26 Copynumber: 2.3 Consensus size: 27
32492229 TATATATATA
*
32492239 ATAATAATATAAAAAGTAGATAA-AAT
1 ATAATAATATAAAAAGTAAATAAGAAT
*
32492265 ATAATGATATAAAAA-TAAAATAAGAAT
1 ATAATAATATAAAAAGT-AAATAAGAAT
32492292 A-AAGTAATA
1 ATAA-TAATA
32492301 GGTAATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
25 1 0.03
26 21 0.70
27 8 0.27
ACGTcount: A:0.66, C:0.00, G:0.08, T:0.26
Consensus pattern (27 bp):
ATAATAATATAAAAAGTAAATAAGAAT
Found at i:32493394 original size:16 final size:16
Alignment explanation
Indices: 32493373--32493404 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
32493363 TTTTGTGTAA
*
32493373 TGGGCTGTTAGTTTAG
1 TGGGCTGGTAGTTTAG
32493389 TGGGCTGGTAGTTTAG
1 TGGGCTGGTAGTTTAG
32493405 GTTATTGGGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.12, C:0.06, G:0.41, T:0.41
Consensus pattern (16 bp):
TGGGCTGGTAGTTTAG
Found at i:32494124 original size:7 final size:7
Alignment explanation
Indices: 32494112--32494137 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
32494102 GGGGGTTAGG
32494112 TTTTTCT
1 TTTTTCT
32494119 TTTTTCT
1 TTTTTCT
32494126 TTTTTCT
1 TTTTTCT
32494133 TTTTT
1 TTTTT
32494138 TTTAGGGTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTCT
Found at i:32494252 original size:164 final size:164
Alignment explanation
Indices: 32493981--32494310 Score: 608
Period size: 164 Copynumber: 2.0 Consensus size: 164
32493971 TTACATGATT
32493981 TTCTATTATTTCTTTTTCTATTTTGTAGGTGGTGGTGGTAGACAATGGATATAAAAAATGGGAGG
1 TTCTATTATTTCTTTTTCTATTTTGTAGGTGGTGGTGGTAGACAATGGATATAAAAAATGGGAGG
* * *
32494046 AAAAATGGGGCAAGTGGGAAAGTGGCTAGGTGGTTAGGGTTTCTTAGTTTTTTT-TGGGGGGTTA
66 AAAAATGGGACAAGTGGGAAAGTGGCTAGGTGGCTAGGGTTTCTTAGTTTTTTTGGGGGGGGTTA
32494110 GGTTTTTCTTTTTTCTTTTTTCTTTTTTTTTAGGG
131 GGTTTTTCTTTTTTCTTTTTTC-TTTTTTTTAGGG
*
32494145 TTCTATTATTTCTTTTTCTATTTTGTAGGTGGTGGTGGTAGACAATGGATATCAAAAATGGGAGG
1 TTCTATTATTTCTTTTTCTATTTTGTAGGTGGTGGTGGTAGACAATGGATATAAAAAATGGGAGG
32494210 AAAAATGGGACAAGTGGGAAAGTGGCTAGGTGGCTAGGGTTTCTTAGTTTTTTTGGGGGGGGTTA
66 AAAAATGGGACAAGTGGGAAAGTGGCTAGGTGGCTAGGGTTTCTTAGTTTTTTTGGGGGGGGTTA
32494275 GGTTTTTCTTTTTTCTTTTTTCTTTTTTTTAGGG
131 GGTTTTTCTTTTTTCTTTTTTCTTTTTTTTAGGG
32494309 TT
1 TT
32494311 AGGTTTTTTT
Statistics
Matches: 161, Mismatches: 4, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
164 130 0.81
165 31 0.19
ACGTcount: A:0.19, C:0.07, G:0.29, T:0.45
Consensus pattern (164 bp):
TTCTATTATTTCTTTTTCTATTTTGTAGGTGGTGGTGGTAGACAATGGATATAAAAAATGGGAGG
AAAAATGGGACAAGTGGGAAAGTGGCTAGGTGGCTAGGGTTTCTTAGTTTTTTTGGGGGGGGTTA
GGTTTTTCTTTTTTCTTTTTTCTTTTTTTTAGGG
Found at i:32494293 original size:6 final size:7
Alignment explanation
Indices: 32494277--32494302 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
32494267 GGGGGTTAGG
32494277 TTTTTCT
1 TTTTTCT
32494284 TTTTTCT
1 TTTTTCT
32494291 TTTTTCT
1 TTTTTCT
32494298 TTTTT
1 TTTTT
32494303 TTAGGGTTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTCT
Found at i:32494327 original size:26 final size:27
Alignment explanation
Indices: 32494290--32494347 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
32494280 TTCTTTTTTC
32494290 TTTTTTCTTTTTTTTAGGGTTAGGTTT
1 TTTTTTCTTTTTTTTAGGGTTAGGTTT
*
32494317 TTTTTTCTTTTTTTTTGGGTTAGGTTT
1 TTTTTTCTTTTTTTTAGGGTTAGGTTT
32494344 TTTT
1 TTTT
32494348 GGGGGGGCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.05, C:0.03, G:0.17, T:0.74
Consensus pattern (27 bp):
TTTTTTCTTTTTTTTAGGGTTAGGTTT
Found at i:32499500 original size:29 final size:29
Alignment explanation
Indices: 32499476--32499541 Score: 96
Period size: 29 Copynumber: 2.3 Consensus size: 29
32499466 GTATTTTATT
*
32499476 TTTATTTTTCCCACTTTCAAAATTTTGGC
1 TTTATTTTTCCCACTTTCAAAATTTTAGC
* *
32499505 TTTATTTTTCCCACTTTTAAAATTTTGGC
1 TTTATTTTTCCCACTTTCAAAATTTTAGC
*
32499534 TTTCTTTT
1 TTTATTTT
32499542 CCAAAAAGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.18, C:0.18, G:0.06, T:0.58
Consensus pattern (29 bp):
TTTATTTTTCCCACTTTCAAAATTTTAGC
Found at i:32500630 original size:40 final size:40
Alignment explanation
Indices: 32500547--32500630 Score: 105
Period size: 40 Copynumber: 2.1 Consensus size: 40
32500537 GTACTCTATG
* * * **
32500547 GTGTGTAAGGTTGGATGGGTTGATTTTATCCCCATATTTT
1 GTGTGTAAGGATGGATGGGTCGATTTTATCCCCACATGGT
* *
32500587 GTGTGTAGGGATGGGTGGGTCGATTTTATCCCCACATGGT
1 GTGTGTAAGGATGGATGGGTCGATTTTATCCCCACATGGT
32500627 GTGT
1 GTGT
32500631 TGGGTTGGAA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.15, C:0.12, G:0.33, T:0.39
Consensus pattern (40 bp):
GTGTGTAAGGATGGATGGGTCGATTTTATCCCCACATGGT
Found at i:32501938 original size:25 final size:25
Alignment explanation
Indices: 32501918--32501977 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
32501908 ATGCTCCTCT
32501918 GAGCTGAATAAT-GGTAAGCTCATAC
1 GAGCTGAAT-ATCGGTAAGCTCATAC
* *
32501943 GAGCTGAGTATCGGTAAGCTCATAA
1 GAGCTGAATATCGGTAAGCTCATAC
32501968 GAGCTAGAAT
1 GAGCT-GAAT
32501978 CAGTAGCCCT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
24 2 0.07
25 25 0.83
26 3 0.10
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.23
Consensus pattern (25 bp):
GAGCTGAATATCGGTAAGCTCATAC
Found at i:32506335 original size:30 final size:30
Alignment explanation
Indices: 32506292--32506349 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
32506282 CACAGGCTGG
* * * *
32506292 CACATGGGCGTGTGGCCAGCTCGTGTGGCT
1 CACACGGGAGTGTGCCCAGCCCGTGTGGCT
32506322 CACACGGGAGTGTGCCCAGCCCGTGTGG
1 CACACGGGAGTGTGCCCAGCCCGTGTGG
32506350 AAGTGCCCAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.12, C:0.29, G:0.40, T:0.19
Consensus pattern (30 bp):
CACACGGGAGTGTGCCCAGCCCGTGTGGCT
Found at i:32508288 original size:21 final size:21
Alignment explanation
Indices: 32508262--32508309 Score: 87
Period size: 21 Copynumber: 2.2 Consensus size: 21
32508252 TTATTACTTA
32508262 TTTTTATGATCTCTTTTTTAT
1 TTTTTATGATCTCTTTTTTAT
32508283 TTTTTATGATCTCTTTTTTAT
1 TTTTTATGATCTCTTTTTTAT
32508304 TGTTTT
1 T-TTTT
32508310 TTTATTGAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.12, C:0.08, G:0.06, T:0.73
Consensus pattern (21 bp):
TTTTTATGATCTCTTTTTTAT
Found at i:32509731 original size:226 final size:224
Alignment explanation
Indices: 32509421--32509842 Score: 630
Period size: 226 Copynumber: 1.9 Consensus size: 224
32509411 CCACTGTAAC
*
32509421 TTCAGGGAGATAAGAGTTGTGGCTTCAATCTGCTCCATGCAACCTCAGAGAGATGAGATTTGTAG
1 TTCAGGGAGATAAGAGTTGTGGCTTCAATCTGCTCCATACAACCTCAGAGAGATGAGATTTGTAG
* * *
32509486 CCTATCCTCAATCTGCTCCACTACAACTCCAAGGAGATAAGATTTGGTATCTTTAACCTACTCCA
66 CCTATCCTCAATATGCTCCACTACAACTCCAAGGAGATAAGATTT-GTAACTTCAACCTACTCCA
* *
32509551 CTGCGACTTCAG-GAAGATAAGGTTTTCTATGATCGATCTACTCCATTGCAACTTCAGGGAGATA
130 CTGCGACTT-AGAG-AGATAAGGTTTTCTATGATCGATCTACTCCACTGCAACTTCAGCGAGATA
32509615 AGATCTATAACTTCAATCTGCTCAACTGCAAA
193 AGATCTATAACTTCAATCTGCTCAACTGCAAA
* * * *
32509647 TTCAGGGAGATAAGATTTGTGGCTTCAATTTGCTCCATACAACCTTAGGGAGATGAGATTTGTAG
1 TTCAGGGAGATAAGAGTTGTGGCTTCAATCTGCTCCATACAACCTCAGAGAGATGAGATTTGTAG
* * * * * * * * *
32509712 TCTGTCTTCAATATGCTCCACTGCTACTTCAGGGAGATAAGATTTGTAACTTCAACCTGCTCCTC
66 CCTATCCTCAATATGCTCCACTACAACTCCAAGGAGATAAGATTTGTAACTTCAACCTACTCCAC
*
32509777 TGCGACTTAGAGAGATAAGGTTTTCTATGATTGATCTACTCCACTGCAACTTCAGCGAGATAAGA
131 TGCGACTTAGAGAGATAAGGTTTTCTATGATCGATCTACTCCACTGCAACTTCAGCGAGATAAGA
32509842 T
196 T
32509843 TCGTGGCTTC
Statistics
Matches: 175, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
224 53 0.30
225 25 0.14
226 97 0.55
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (224 bp):
TTCAGGGAGATAAGAGTTGTGGCTTCAATCTGCTCCATACAACCTCAGAGAGATGAGATTTGTAG
CCTATCCTCAATATGCTCCACTACAACTCCAAGGAGATAAGATTTGTAACTTCAACCTACTCCAC
TGCGACTTAGAGAGATAAGGTTTTCTATGATCGATCTACTCCACTGCAACTTCAGCGAGATAAGA
TCTATAACTTCAATCTGCTCAACTGCAAA
Found at i:32509735 original size:92 final size:89
Alignment explanation
Indices: 32509625--32509889 Score: 291
Period size: 92 Copynumber: 3.0 Consensus size: 89
32509615 AGATCTATAA
* * * * *
32509625 CTTCAATCTGCTCAACTGCAAATTCAGGGAGATAAGATTTGTGGCTTCAATTTGCTCCATACAAC
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTGGCTTCAATCTGCTCCATGCGAC
* *
32509690 CTTAGGGAGATGAGATTTGTAGTCTG
66 CTTAGGGAGATGAGATTT-T-CTATG
* * ** * *
32509716 TCTTCAATATGCTCCACTGCTACTTCAGGGAGATAAGATTTGTAACTTCAACCTGCTCCTCTGCG
1 -CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTGGCTTCAATCTGCTCC-ATGCG
* * *
32509781 A-CTTAGAGAGATAAGGTTTTCTATG
64 ACCTTAGGGAGATGAGATTTTCTATG
* * * * *
32509806 ATT-GATCTACTCCACTGCAACTTCAGCGAGATAAGATTCGTGGCTTCAATCTGCTCCATGCGAC
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTGGCTTCAATCTGCTCCATGCGAC
32509870 CTTAGGGAGATGAGATTTTC
66 CTTAGGGAGATGAGATTTTC
32509890 CATAATGACT
Statistics
Matches: 141, Mismatches: 30, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
87 5 0.04
88 62 0.44
89 2 0.01
90 3 0.02
91 1 0.01
92 65 0.46
93 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.32
Consensus pattern (89 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTGGCTTCAATCTGCTCCATGCGAC
CTTAGGGAGATGAGATTTTCTATG
Found at i:32509756 original size:49 final size:45
Alignment explanation
Indices: 32509091--32509887 Score: 295
Period size: 44 Copynumber: 17.7 Consensus size: 45
32509081 CCTCGATCTA
** * * * *
32509091 CTCCACTGCAACTTTGGGGAGATAAGATCTGCA-GCTTTAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGTAGGCTTCAATATG
* * * * *
32509135 CTCCACTGCAACTTTAGAGAGATTAGATTTGTAATTTGTAGTTTTAATATG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGT-A---G--GCTTCAATATG
* * * * * * *
32509186 TTCCACTTCAACTTCAGGGAAATAAGATTCGCTA-TCTTCAGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTG-TAGGCTTCAATATG
* * * * * *
32509231 CTCCAATGCCACTTCAGGGAGATAAGA--TCTACGGCTTTAATCTA
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGTA-GGCTTCAATATG
** * * ***
32509275 CTCCACTGCAACTTCAAAGAGATATGATTTGCTA-TCTTCAGCCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTG-TAGGCTTCAATATG
* * * * * * * **
32509320 CTTCATTGCAACTTGAGGGGGATAAGACTTATAAG-TTCAACCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGTAGGCTTCAATATG
** * * * * * * * * *
32509364 CTCCACTGTGACTTTAGAGAGATAAGGTTTTCTATG-ATCGATCTA
1 CTCCACTGCAACTTCAGGGAGATAA-GATTTGTAGGCTTCAATATG
* * *
32509409 CTCCACTGTAACTTCAGGGAGATAAGAGTTGT-GGCTTCAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGTAGGCTTCAATATG
* * * * *
32509453 CTCCA-TGCAACCTCAGAGAGATGAGATTTGTAGCCTATCCTCAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGTAGGC--T--TCAATATG
* * * * * ** *
32509501 CTCCACTACAACTCCAAGGAGATAAGATTTGGTA-TCTTTAACCTA
1 CTCCACTGCAACTTCAGGGAGATAAGATTT-GTAGGCTTCAATATG
* * * * * * * * *
32509546 CTCCACTGCGACTTCAGGAAGATAAGGTTTTCTATG-ATCGATCTA
1 CTCCACTGCAACTTCAGGGAGATAA-GATTTGTAGGCTTCAATATG
* * * * *
32509591 CTCCATTGCAACTTCAGGGAGATAAGATCTATA-ACTTCAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGTAGGCTTCAATATG
* * *
32509635 CTCAACTGCAAATTCAGGGAGATAAGATTTGT-GGCTTCAATTTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGTAGGCTTCAATATG
* *
32509679 CTCCA-TACAACCTT-AGGGAGATGAGATTTGTAGTCTGTCTTCAATATG
1 CTCCACTGCAA-CTTCAGGGAGATAAGATTTGTAG---G-CTTCAATATG
* * **
32509727 CTCCACTGCTACTTCAGGGAGATAAGATTTGTA-ACTTCAACCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGTAGGCTTCAATATG
* * * * * * * * * *
32509771 CTCCTCTGCGACTT-AGAGAGATAAGGTTTTCTATGATT-GATCTA
1 CTCCACTGCAACTTCAGGGAGATAA-GATTTGTAGGCTTCAATATG
* * *
32509815 CTCCACTGCAACTTCAGCGAGATAAGATTCGT-GGCTTCAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGTAGGCTTCAATATG
* *
32509859 CTCCA-TGCGACCTT-AGGGAGATGAGATTT
1 CTCCACTGC-AACTTCAGGGAGATAAGATTT
32509888 TCCATAATGA
Statistics
Matches: 556, Mismatches: 157, Indels: 81
0.70 0.20 0.10
Matches are distributed among these distances:
42 2 0.00
43 69 0.12
44 213 0.38
45 155 0.28
46 6 0.01
47 4 0.01
48 30 0.05
49 39 0.07
50 3 0.01
51 34 0.06
52 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.31
Consensus pattern (45 bp):
CTCCACTGCAACTTCAGGGAGATAAGATTTGTAGGCTTCAATATG
Found at i:32521048 original size:3 final size:3
Alignment explanation
Indices: 32521040--32521085 Score: 56
Period size: 3 Copynumber: 15.3 Consensus size: 3
32521030 TACTTAATTG
* * * *
32521040 AAT AAT AAT AGT AAT AAT AAT AAT GAT CAT AAT ATT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
32521086 TAGTAAAAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:32521247 original size:15 final size:15
Alignment explanation
Indices: 32521227--32521255 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
32521217 ATATAAATAG
32521227 AAATAGAAATATAAT
1 AAATAGAAATATAAT
32521242 AAATAGAAATATAA
1 AAATAGAAATATAA
32521256 ATAGATAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:32522125 original size:16 final size:16
Alignment explanation
Indices: 32522104--32522135 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
32522094 TTGTGGCCTG
32522104 ATTCAATTTTCTTCTT
1 ATTCAATTTTCTTCTT
32522120 ATTCAATTTTCTTCTT
1 ATTCAATTTTCTTCTT
32522136 TTTTTTTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.00, T:0.62
Consensus pattern (16 bp):
ATTCAATTTTCTTCTT
Found at i:32524568 original size:28 final size:27
Alignment explanation
Indices: 32524505--32524574 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
32524495 ATATTAAGTC
* *
32524505 CGCACACTCAGTGCCATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
32524532 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
32524560 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32524575 NNNNNNNNNN
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.31, C:0.30, G:0.13, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:32534647 original size:28 final size:28
Alignment explanation
Indices: 32534584--32534849 Score: 453
Period size: 28 Copynumber: 9.5 Consensus size: 28
32534574 ATATTAAGTC
*
32534584 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
32534611 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
32534639 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
32534667 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
32534695 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
32534723 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
32534751 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
32534779 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
32534807 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
32534836 CGCACACTTAGTGC
1 CGCACACTTAGTGC
32534850 CAATCTCATG
Statistics
Matches: 228, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
27 22 0.10
28 187 0.82
29 19 0.08
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:32537059 original size:16 final size:16
Alignment explanation
Indices: 32537040--32537071 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
32537030 TTATTTATTA
*
32537040 AATTAATTAATTTTCT
1 AATTAAATAATTTTCT
32537056 AATTAAATAATTTTCT
1 AATTAAATAATTTTCT
32537072 CAACCCAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (16 bp):
AATTAAATAATTTTCT
Found at i:32542464 original size:122 final size:125
Alignment explanation
Indices: 32542253--32542539 Score: 327
Period size: 122 Copynumber: 2.3 Consensus size: 125
32542243 AAAAGTGAGA
* * *
32542253 AGTAAAAG-TTTAGGGGAGAAATAAAAAGTTTAGGGGTTGAGGGAGTAAAATTGTGGTGCGGGAA
1 AGTAAAAGTTTTGGGGGA-AAATAAAAAGTTTGGGGGTTGAGGGAGTAAAATTGTGGGGCGGGAA
32542317 TACTCAAAAAAAATTGGA-G-GTGGGGAATGAGTTTGGGGTAGAAGGGGGTGGAAT-GG-G
65 TACTCAAAAAAAATTGGAGGAGTGGGGAATGAGTTTGGGGTAGAAGGGGGTGGAATGGGAG
* *
32542374 AGTAAAAGTTTTGGGGGAAAATAAAAAGTTTTGGGGGTTGAGGGAGTAACATT-TAGGGGGGGTG
1 AGTAAAAGTTTTGGGGGAAAATAAAAAG-TTTGGGGGTTGAGGGAGTAAAATTGT-GGGGCGG-G
* * * *
32542438 AAATATTCAAAAAAAATTGAGGGGGGAG-GGGGAATGGGTTTGGGGTAGAAGGGGGTGGGATGGG
63 -AATACTCAAAAAAAATT---GGAGGAGTGGGGAATGAGTTTGGGGTAGAAGGGGGTGGAAT--G
32542502 AGGAG
122 -GGAG
*
32542507 AGTAAAAGTTTTGGGGGAAAGTAAAAAGGTTTG
1 AGTAAAAGTTTTGGGGGAAAATAAAAA-GTTTG
32542540 AGAGTTTGGG
Statistics
Matches: 140, Mismatches: 10, Indels: 20
0.82 0.06 0.12
Matches are distributed among these distances:
121 19 0.14
122 35 0.25
123 1 0.01
124 16 0.11
127 2 0.01
128 32 0.23
129 1 0.01
132 2 0.01
133 31 0.22
134 1 0.01
ACGTcount: A:0.34, C:0.02, G:0.42, T:0.23
Consensus pattern (125 bp):
AGTAAAAGTTTTGGGGGAAAATAAAAAGTTTGGGGGTTGAGGGAGTAAAATTGTGGGGCGGGAAT
ACTCAAAAAAAATTGGAGGAGTGGGGAATGAGTTTGGGGTAGAAGGGGGTGGAATGGGAG
Found at i:32542669 original size:9 final size:9
Alignment explanation
Indices: 32542655--32542691 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
32542645 TTGACTTGAA
32542655 TAATTCGAT
1 TAATTCGAT
32542664 TAATTCGAT
1 TAATTCGAT
*
32542673 TAATTCGAA
1 TAATTCGAT
*
32542682 TAATTTGAT
1 TAATTCGAT
32542691 T
1 T
32542692 CGTTTAACTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.35, C:0.08, G:0.11, T:0.46
Consensus pattern (9 bp):
TAATTCGAT
Found at i:32543879 original size:11 final size:11
Alignment explanation
Indices: 32543852--32543894 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
32543842 ATGGCATTAA
*
32543852 AAAATATATAC
1 AAAATATATAT
*
32543863 ATAATATATAT
1 AAAATATATAT
*
32543874 AAAATACATAT
1 AAAATATATAT
*
32543885 AATATATATA
1 AAAATATATA
32543895 CGTATTAGAA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (11 bp):
AAAATATATAT
Found at i:32544841 original size:30 final size:30
Alignment explanation
Indices: 32544805--32544862 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
32544795 TTTTGAAAAA
32544805 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
32544835 CAGAAATTAAAAAGCTCAACTCACCTCT
1 CAGAAATTAAAAAGCTCAACTCAACTCT
32544863 AGCAATATGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.43, C:0.28, G:0.09, T:0.21
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:32545180 original size:77 final size:78
Alignment explanation
Indices: 32544846--32545203 Score: 420
Period size: 79 Copynumber: 4.6 Consensus size: 78
32544836 AGAAATTAAA
* *
32544846 AAGCTCAACTCACCTCTAGCAATATGAGTTGAATTTTTTTGAAAAAAAACAGAAATTG-AAAATT
1 AAGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTTTG---AAAAACAGAAATTGAAAAATA
* **
32544910 GCTCAGCACGTGAGC-C
62 CCTCAGTGCGTGAGCTC
* * *
32544926 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATACC
1 AA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTG-AAAAATACC
* * *
32544991 TCAGTGTGTGATCTG
64 TCAGTGCGTGAGCTC
* * *
32545006 AAGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATACCT
1 AAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTG-AAAAATACCT
* * *
32545071 CAGTGTGTGATCTG
65 CAGTGCGTGAGCTC
* * * *
32545085 AAGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTG-AAAATAGCTT
1 AAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAATACCTC
32545149 AGTGCGTGAGC-C
66 AGTGCGTGAGCTC
32545161 AAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA
1 AA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
32545204 CTTAACTTGA
Statistics
Matches: 251, Mismatches: 22, Indels: 14
0.87 0.08 0.05
Matches are distributed among these distances:
76 12 0.05
77 58 0.23
79 141 0.56
80 13 0.05
81 27 0.11
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (78 bp):
AAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAATACCTC
AGTGCGTGAGCTC
Found at i:32545466 original size:80 final size:78
Alignment explanation
Indices: 32545271--32545551 Score: 421
Period size: 80 Copynumber: 3.6 Consensus size: 78
32545261 ACCTCTCGCA
32545271 AAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAAATATGAGT
1 AAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCAC-AATATGAGT
*
32545336 CGATTTTTTTTTTG
65 TGATTTTTTTTTTG
*
32545350 AAAAACAGAAATTGAAAATACATCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTT
32545415 GATTTTTTTTTTTTG
66 GA--TTTTTTTTTTG
* * *
32545430 AAAAACAGAAATTGAAAATGCCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTT
*
32545495 GA-----ATTTTG
66 GATTTTTTTTTTG
* *
32545503 -AAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTT
1 AAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTT
32545552 TGAACAGAAA
Statistics
Matches: 189, Mismatches: 11, Indels: 11
0.90 0.05 0.05
Matches are distributed among these distances:
72 45 0.24
73 5 0.03
78 11 0.06
79 54 0.29
80 74 0.39
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (78 bp):
AAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTT
GATTTTTTTTTTG
Found at i:32545571 original size:49 final size:49
Alignment explanation
Indices: 32545505--32545600 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
32545495 GAATTTTGAA
*
32545505 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTTG
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
32545554 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
32545601 CTCGCAATAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (49 bp):
AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
Found at i:32545772 original size:54 final size:55
Alignment explanation
Indices: 32545672--32545777 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 55
32545662 GAACCGAGGC
* *
32545672 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGCAGAAATTGAAAAGGT
* * *
32545726 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAA-CATAAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAAAAAGCAGAAATTGAAAA
32545778 CAGAAATTGA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
54 34 0.76
55 11 0.24
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (55 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGCAGAAATTGAAAAGGT
Found at i:32545784 original size:13 final size:13
Alignment explanation
Indices: 32545757--32545790 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
32545747 GAGTTGATTC
*
32545757 TTGAACAACATAAA
1 TTGAA-AACAGAAA
32545771 TTGAAAACAGAAA
1 TTGAAAACAGAAA
32545784 TTGAAAA
1 TTGAAAA
32545791 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:32545823 original size:140 final size:140
Alignment explanation
Indices: 32545628--32545983 Score: 633
Period size: 140 Copynumber: 2.5 Consensus size: 140
32545618 ATTTTTTTTT
32545628 TTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATA
1 TTGAAA-ACAGAAATTGAAAATACCTCAGC--GTG-ACCTGAGGCTCAACTCACCTCTCGCAATA
32545692 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
62 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
32545757 TTGAACAACATAAA
127 TTGAACAACATAAA
32545771 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
32545836 CTGATTTTGAAAAAGTAGAAATTAAACGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
32545901 ACAACATAAA
131 ACAACATAAA
* *
32545911 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAATTCACCTTTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
32545976 TTGATTTT
66 CTGATTTT
32545984 NNNNNNNNNN
Statistics
Matches: 208, Mismatches: 4, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
139 3 0.01
140 176 0.85
142 23 0.11
143 6 0.03
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.26
Consensus pattern (140 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
ACAACATAAA
Found at i:32545924 original size:13 final size:13
Alignment explanation
Indices: 32545897--32545930 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
32545887 GAGTTGATTC
*
32545897 TTGAACAACATAAA
1 TTGAA-AACAGAAA
32545911 TTGAAAACAGAAA
1 TTGAAAACAGAAA
32545924 TTGAAAA
1 TTGAAAA
32545931 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:32554052 original size:12 final size:12
Alignment explanation
Indices: 32554035--32554065 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
32554025 TATGCAATAT
32554035 ATGAATGAATGC
1 ATGAATGAATGC
32554047 ATGAATGAATGC
1 ATGAATGAATGC
32554059 ATGAATG
1 ATGAATG
32554066 TCAAAATGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.42, C:0.06, G:0.26, T:0.26
Consensus pattern (12 bp):
ATGAATGAATGC
Found at i:32556634 original size:20 final size:20
Alignment explanation
Indices: 32556611--32556665 Score: 96
Period size: 19 Copynumber: 2.9 Consensus size: 20
32556601 TTTTTAGGGG
32556611 GGGTTAGGTTTTTTTTTTTT
1 GGGTTAGGTTTTTTTTTTTT
32556631 GGGTTAGG-TTTTTTTTTTT
1 GGGTTAGGTTTTTTTTTTTT
32556650 -GGTTAGGTTTTTTTTT
1 GGGTTAGGTTTTTTTTT
32556666 GGGAGGGCTT
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
18 7 0.21
19 19 0.56
20 8 0.24
ACGTcount: A:0.05, C:0.00, G:0.25, T:0.69
Consensus pattern (20 bp):
GGGTTAGGTTTTTTTTTTTT
Found at i:32556642 original size:18 final size:18
Alignment explanation
Indices: 32556611--32556665 Score: 83
Period size: 18 Copynumber: 2.9 Consensus size: 18
32556601 TTTTTAGGGG
32556611 GGGTTAGGTTTTTTTTTTTT
1 GGGTTAGG--TTTTTTTTTT
32556631 GGGTTAGGTTTTTTTTTT
1 GGGTTAGGTTTTTTTTTT
*
32556649 TGGTTAGGTTTTTTTTT
1 GGGTTAGGTTTTTTTTT
32556666 GGGAGGGCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
18 26 0.76
20 8 0.24
ACGTcount: A:0.05, C:0.00, G:0.25, T:0.69
Consensus pattern (18 bp):
GGGTTAGGTTTTTTTTTT
Found at i:32557553 original size:87 final size:87
Alignment explanation
Indices: 32557443--32557609 Score: 223
Period size: 87 Copynumber: 1.9 Consensus size: 87
32557433 CTGCTTTTTC
* * *
32557443 TTTTCACTCATTTGGATACTTGAACTTTCAAAATACAT-AAAAAGGCCTTAAAACCT-TTTCAAA
1 TTTTCACTCAATTGGATACTTGAACTTTCAAAATACATCAAAAAGACCCTAAAA-CTATTTCAAA
32557506 AAAAGT-AATTAAGCCCATATTAT
65 AAAA-TCAATTAAGCCCATATTAT
* * * *
32557529 TTTTGCACTCAATTGGGTATTTGAACTTTCAAAATACATCAAAAAGACCCTCAAATTATTTCAAA
1 TTTT-CACTCAATTGGATACTTGAACTTTCAAAATACATCAAAAAGACCCTAAAACTATTTCAAA
32557594 AAAATCAATTAAGCCC
65 AAAATCAATTAAGCCC
32557610 CTGTTTTTAA
Statistics
Matches: 70, Mismatches: 7, Indels: 6
0.84 0.08 0.07
Matches are distributed among these distances:
86 4 0.06
87 33 0.47
88 33 0.47
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (87 bp):
TTTTCACTCAATTGGATACTTGAACTTTCAAAATACATCAAAAAGACCCTAAAACTATTTCAAAA
AAATCAATTAAGCCCATATTAT
Found at i:32557700 original size:18 final size:18
Alignment explanation
Indices: 32557668--32557758 Score: 71
Period size: 18 Copynumber: 4.9 Consensus size: 18
32557658 AGCTATAAAT
**
32557668 ATTATTAAATTTTAATAAA
1 ATTATTAAAAATTAA-AAA
32557687 ATT-TTAAAAATTAAAAA
1 ATTATTAAAAATTAAAAA
*
32557704 ATTATTAAAAATTGGAAAA
1 ATTATTAAAAATT-AAAAA
32557723 A-TA-TAAAAATTGTAAAAA
1 ATTATTAAAAA-T-TAAAAA
* *
32557741 AATATAAAAAATGTAAAA
1 ATTATTAAAAAT-TAAAA
32557759 TTTTATAAAA
Statistics
Matches: 61, Mismatches: 5, Indels: 12
0.78 0.06 0.15
Matches are distributed among these distances:
17 12 0.20
18 26 0.43
19 18 0.30
20 5 0.08
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (18 bp):
ATTATTAAAAATTAAAAA
Found at i:32557741 original size:19 final size:19
Alignment explanation
Indices: 32557698--32557857 Score: 75
Period size: 19 Copynumber: 8.7 Consensus size: 19
32557688 TTTTAAAAAT
*
32557698 TAAAAAATTATTAAAAATTG
1 TAAAAAAATA-TAAAAATTG
*
32557718 --GAAAAATATAAAAATTG
1 TAAAAAAATATAAAAATTG
*
32557735 TAAAAAAATATAAAAAATG
1 TAAAAAAATATAAAAATTG
*** *
32557754 TAAAATTTTAT-AAAATCG
1 TAAAAAAATATAAAAATTG
* *
32557772 T--AAAAATATAAATA-TA
1 TAAAAAAATATAAAAATTG
* * *
32557788 TAGAAATATA-AAAAATTA
1 TAAAAAAATATAAAAATTG
*** *
32557806 TAAAATTTTAT-AAAATCG
1 TAAAAAAATATAAAAATTG
* *
32557824 TAAGAAAATTATAAAAAATG
1 TAA-AAAAATATAAAAATTG
*
32557844 TAAAGAAATATAAA
1 TAAAAAAATATAAA
32557858 TTTAGTAATT
Statistics
Matches: 103, Mismatches: 28, Indels: 19
0.69 0.19 0.13
Matches are distributed among these distances:
16 6 0.06
17 16 0.16
18 35 0.34
19 38 0.37
20 8 0.08
ACGTcount: A:0.63, C:0.01, G:0.06, T:0.29
Consensus pattern (19 bp):
TAAAAAAATATAAAAATTG
Found at i:32557833 original size:21 final size:21
Alignment explanation
Indices: 32557807--32557851 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
32557797 AAAAAATTAT
* *
32557807 AAAATTTTATAAAATCGT-AAG
1 AAAATTATAAAAAAT-GTAAAG
32557828 AAAATTATAAAAAATGTAAAG
1 AAAATTATAAAAAATGTAAAG
32557849 AAA
1 AAA
32557852 TATAAATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 2 0.10
21 19 0.90
ACGTcount: A:0.62, C:0.02, G:0.09, T:0.27
Consensus pattern (21 bp):
AAAATTATAAAAAATGTAAAG
Found at i:32557852 original size:10 final size:9
Alignment explanation
Indices: 32557692--32557857 Score: 58
Period size: 9 Copynumber: 18.2 Consensus size: 9
32557682 ATAAAATTTT
32557692 AAAAAT-TA
1 AAAAATATA
*
32557700 AAAAATTATT
1 AAAAA-TATA
*
32557710 AAAAAT-TGG
1 AAAAATAT-A
32557719 AAAAATATA
1 AAAAATATA
* *
32557728 AAAATTGTAA
1 AAAAATAT-A
32557738 AAAAATATA
1 AAAAATATA
*
32557747 AAAAATGT-
1 AAAAATATA
* *
32557755 AAAATTTTA
1 AAAAATATA
* *
32557764 TAAAATCGT-
1 AAAAAT-ATA
32557773 AAAAATAT-
1 AAAAATATA
*
32557781 AAATATAT-
1 AAAAATATA
*
32557789 AGAAATATA
1 AAAAATATA
32557798 AAAAAT-TA
1 AAAAATATA
* *
32557806 TAAAATTTTA
1 -AAAAATATA
* *
32557816 TAAAATCGTA
1 AAAAAT-ATA
32557826 AGAAAATTATA
1 A-AAAA-TATA
*
32557837 AAAAATGTA
1 AAAAATATA
32557846 AAGAAATATA
1 AA-AAATATA
32557856 AA
1 AA
32557858 TTTAGTAATT
Statistics
Matches: 117, Mismatches: 27, Indels: 26
0.69 0.16 0.15
Matches are distributed among these distances:
8 28 0.24
9 50 0.43
10 31 0.26
11 7 0.06
12 1 0.01
ACGTcount: A:0.64, C:0.01, G:0.06, T:0.29
Consensus pattern (9 bp):
AAAAATATA
Found at i:32558181 original size:19 final size:20
Alignment explanation
Indices: 32558152--32558202 Score: 72
Period size: 19 Copynumber: 2.7 Consensus size: 20
32558142 TTTAATAATT
*
32558152 TTTAA-ATTTTTAT-TAAGA
1 TTTAATATTTTTATCTAAAA
32558170 TTTAATATTTTT-TCTAAAA
1 TTTAATATTTTTATCTAAAA
32558189 TTTAATATTTTTAT
1 TTTAATATTTTTAT
32558203 ATTTTTTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 6 0.21
19 22 0.76
20 1 0.03
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (20 bp):
TTTAATATTTTTATCTAAAA
Found at i:32558312 original size:87 final size:86
Alignment explanation
Indices: 32558229--32558628 Score: 374
Period size: 87 Copynumber: 4.5 Consensus size: 86
32558219 ATAAAAGCAT
** *
32558229 GGGCTTAATTGCTTTTTTGAA-ATTTTTTGAGGGTTTTTTGATGCATTTTGAAA-ATTCAAGTAC
1 GGGCTTAATTGCTTTTTTGAATA-AATTTGAGGGCTTTTTGATGCATTTTGAAAGA-TCAAGTAC
* * *
32558292 CCAATTTAGTG-GAAAAAAAAGG
64 CCAATTGAGTGCAAAAAAAAAGA
* * **
32558314 GGGCTTAATTGCTTTTTTTGAATAAGTTTGAGGGCCTTTTTGATGCATTTTTAAAGATCAAGTGG
1 GGGCTTAATTGC-TTTTTTGAATAAATTTGAGGG-CTTTTTGATGCATTTTGAAAGATCAAGTAC
*
32558379 TCAATTGAGTGCAAAAAAAAAGGA
64 CCAATTGAGTGCAAAAAAAAA-GA
* * * * ***
32558403 GGCCTTAATTGTTTTTTTGAATAAATTTGAGGGCCTTTTGATGCATTTTTAAAGATCAAGTGGTC
1 GGGCTTAATTGCTTTTTTGAATAAATTTGAGGGCTTTTTGATGCATTTTGAAAGATCAAGTACCC
32558468 AATTGAGTGCAAAAAAAAAAAGAAAAAA
66 AATTGAGTGC--AAAAAAAAAG-----A
* *
32558496 GGAGGCCTTAATTGCTTTTTTTGAATAAATTTGAGGGCCTTTTGATGCATTTTTAAAGATCAAGT
1 -G-GG-CTTAATTGC-TTTTTTGAATAAATTTGAGGGCTTTTTGATGCATTTTGAAAGATCAAGT
***
32558561 GGTCAATTGAGTGCAAAAAAAAAAAGGA
62 ACCCAATTGAGTGC--AAAAAAAAA-GA
* *
32558589 GGGCTTAATTGTTTGTTTTGAAAAAATTTGAGGGCTTTTT
1 GGGCTTAATTGCTT-TTTTGAATAAATTTGAGGGCTTTTT
32558629 ACATCCTTAA
Statistics
Matches: 277, Mismatches: 19, Indels: 33
0.84 0.06 0.10
Matches are distributed among these distances:
85 12 0.04
86 17 0.06
87 75 0.27
88 30 0.11
89 22 0.08
90 31 0.11
91 2 0.01
92 1 0.00
93 2 0.01
94 1 0.00
95 1 0.00
96 8 0.03
97 74 0.27
98 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.22, T:0.37
Consensus pattern (86 bp):
GGGCTTAATTGCTTTTTTGAATAAATTTGAGGGCTTTTTGATGCATTTTGAAAGATCAAGTACCC
AATTGAGTGCAAAAAAAAAGA
Found at i:32558505 original size:96 final size:97
Alignment explanation
Indices: 32558394--32558586 Score: 379
Period size: 97 Copynumber: 2.0 Consensus size: 97
32558384 TGAGTGCAAA
32558394 AAAAAAGGAGGCCTTAATTG-TTTTTTTGAATAAATTTGAGGGCCTTTTGATGCATTTTTAAAGA
1 AAAAAAGGAGGCCTTAATTGCTTTTTTTGAATAAATTTGAGGGCCTTTTGATGCATTTTTAAAGA
32558458 TCAAGTGGTCAATTGAGTGCAAAAAAAAAAAG
66 TCAAGTGGTCAATTGAGTGCAAAAAAAAAAAG
32558490 AAAAAAGGAGGCCTTAATTGCTTTTTTTGAATAAATTTGAGGGCCTTTTGATGCATTTTTAAAGA
1 AAAAAAGGAGGCCTTAATTGCTTTTTTTGAATAAATTTGAGGGCCTTTTGATGCATTTTTAAAGA
32558555 TCAAGTGGTCAATTGAGTGCAAAAAAAAAAAG
66 TCAAGTGGTCAATTGAGTGCAAAAAAAAAAAG
32558587 GAGGGCTTAA
Statistics
Matches: 96, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
96 20 0.21
97 76 0.79
ACGTcount: A:0.38, C:0.09, G:0.21, T:0.32
Consensus pattern (97 bp):
AAAAAAGGAGGCCTTAATTGCTTTTTTTGAATAAATTTGAGGGCCTTTTGATGCATTTTTAAAGA
TCAAGTGGTCAATTGAGTGCAAAAAAAAAAAG
Found at i:32558738 original size:27 final size:28
Alignment explanation
Indices: 32558691--32558746 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 28
32558681 AGAAGATTAA
*
32558691 ATAAAATTTTTAATAAATAAAA-AATAT
1 ATAAAATTTTAAATAAATAAAATAATAT
*
32558718 ATAAAATTATTAAAT-ATTAAAATAATAT
1 ATAAAATT-TTAAATAAATAAAATAATAT
32558746 A
1 A
32558747 ATTTAAATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 14 0.56
28 11 0.44
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (28 bp):
ATAAAATTTTAAATAAATAAAATAATAT
Found at i:32560232 original size:10 final size:10
Alignment explanation
Indices: 32560217--32560306 Score: 64
Period size: 10 Copynumber: 9.4 Consensus size: 10
32560207 AAATTTTGGA
*
32560217 AAAAAATCAT
1 AAAAAATTAT
32560227 AAAAAA-TAT
1 AAAAAATTAT
*
32560236 AAAAAATTGT
1 AAAAAATTAT
**
32560246 AAAATTTTAT
1 AAAAAATTAT
**
32560256 -AAAAATCGT
1 AAAAAATTAT
32560265 AAAAAATTAT
1 AAAAAATTAT
*
32560275 AAAATA-TAT
1 AAAAAATTAT
*
32560284 -AGAAA-TAT
1 AAAAAATTAT
32560292 AAAAAAATTAT
1 -AAAAAATTAT
32560303 AAAA
1 AAAA
32560307 TTTTATAAAG
Statistics
Matches: 60, Mismatches: 15, Indels: 10
0.71 0.18 0.12
Matches are distributed among these distances:
8 6 0.10
9 16 0.27
10 35 0.58
11 3 0.05
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.28
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:32560241 original size:19 final size:19
Alignment explanation
Indices: 32560217--32560297 Score: 60
Period size: 19 Copynumber: 4.3 Consensus size: 19
32560207 AAATTTTGGA
32560217 AAAAAATCATAAAAAATAT
1 AAAAAATCATAAAAAATAT
** * *
32560236 AAAAAATTGT-AAAATTTT
1 AAAAAATCATAAAAAATAT
*
32560254 ATAAAAATCGTAAAAAAT-T
1 A-AAAAATCATAAAAAATAT
* *
32560273 ATAAAAT-ATATAGAAATAT
1 AAAAAATCATA-AAAAATAT
32560292 AAAAAA
1 AAAAAA
32560298 ATTATAAAAT
Statistics
Matches: 48, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
17 2 0.04
18 17 0.35
19 24 0.50
20 5 0.10
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (19 bp):
AAAAAATCATAAAAAATAT
Found at i:32560260 original size:28 final size:28
Alignment explanation
Indices: 32560228--32560315 Score: 115
Period size: 28 Copynumber: 3.1 Consensus size: 28
32560218 AAAAATCATA
*
32560228 AAAAATATAAAAAATTGTAAAATTTTAT
1 AAAAATATAAAAAATTATAAAATTTTAT
* *
32560256 AAAAATCGTAAAAAATTATAAAA-TATAT
1 AAAAAT-ATAAAAAATTATAAAATTTTAT
*
32560284 AGAAATATAAAAAAATTATAAAATTTTAT
1 AAAAATAT-AAAAAATTATAAAATTTTAT
32560313 AAA
1 AAA
32560316 GTCGTAAGAA
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 1 0.02
28 29 0.58
29 20 0.40
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (28 bp):
AAAAATATAAAAAATTATAAAATTTTAT
Found at i:32560306 original size:38 final size:39
Alignment explanation
Indices: 32560216--32560315 Score: 98
Period size: 38 Copynumber: 2.6 Consensus size: 39
32560206 TAAATTTTGG
* *
32560216 AAAAAAATCATAAAAAA-TATAAAAAATTGTAAAATTTT
1 AAAAAAATCATAAAAAATTATAAAAAATTATAAAATTAT
* * *
32560254 ATAAAAATCGTAAAAAATTATAAAATA-TATAGAAA-TAT
1 AAAAAAATCATAAAAAATTATAAAAAATTATA-AAATTAT
* **
32560292 AAAAAAATTATAAAATTTTATAAA
1 AAAAAAATCATAAAAAATTATAAA
32560316 GTCGTAAGAA
Statistics
Matches: 50, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
38 39 0.78
39 11 0.22
ACGTcount: A:0.65, C:0.02, G:0.03, T:0.30
Consensus pattern (39 bp):
AAAAAAATCATAAAAAATTATAAAAAATTATAAAATTAT
Found at i:32560310 original size:57 final size:58
Alignment explanation
Indices: 32560218--32560353 Score: 181
Period size: 57 Copynumber: 2.4 Consensus size: 58
32560208 AATTTTGGAA
*
32560218 AAAAATCATAAA-AAATAT-AAAAAATTGTAAAATTTTATAAAAATCGTAA-AAAATTAT
1 AAAAAT-ATAAAGAAATATAAAAAAATTATAAAATTTTAT-AAAATCGTAAGAAAATTAT
* *
32560275 -AAAATATATAGAAATATAAAAAAATTATAAAATTTTATAAAGTCGTAAGAAAATTAT
1 AAAAATATAAAGAAATATAAAAAAATTATAAAATTTTATAAAATCGTAAGAAAATTAT
*
32560332 ACAAAATGTAAAGAAATATAAA
1 A-AAAATATAAAGAAATATAAA
32560354 TTTCGTAAAA
Statistics
Matches: 69, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
55 4 0.06
56 20 0.29
57 27 0.39
59 18 0.26
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.29
Consensus pattern (58 bp):
AAAAATATAAAGAAATATAAAAAAATTATAAAATTTTATAAAATCGTAAGAAAATTAT
Found at i:32560719 original size:10 final size:10
Alignment explanation
Indices: 32560617--32560719 Score: 54
Period size: 10 Copynumber: 10.3 Consensus size: 10
32560607 AAAAAAATTC
32560617 TAATTTTTAA
1 TAATTTTTAA
*
32560627 TAAATTTTAA
1 TAATTTTTAA
*
32560637 -AGTTTTT-A
1 TAATTTTTAA
*
32560645 T-ATTTTTAT
1 TAATTTTTAA
**
32560654 TAAAATTTAA
1 TAATTTTTAA
32560664 TAATTTTTCTAA
1 TAA-TTTT-TAA
*
32560676 -AATTTATTAT
1 TAATTT-TTAA
*
32560686 TTATTATTT-A
1 TAATT-TTTAA
*
32560696 TAATCTTTTTA
1 TAAT-TTTTAA
32560707 TAATTTTTAA
1 TAATTTTTAA
32560717 TAA
1 TAA
32560720 GGGCATGGGC
Statistics
Matches: 68, Mismatches: 15, Indels: 20
0.66 0.15 0.19
Matches are distributed among these distances:
8 6 0.09
9 6 0.09
10 36 0.53
11 16 0.24
12 4 0.06
ACGTcount: A:0.38, C:0.02, G:0.01, T:0.59
Consensus pattern (10 bp):
TAATTTTTAA
Found at i:32560829 original size:66 final size:64
Alignment explanation
Indices: 32560729--32560853 Score: 178
Period size: 66 Copynumber: 1.9 Consensus size: 64
32560719 AGGGCATGGG
* * * * *
32560729 CTTAATTGCTTTTTTGAGAAATTTTGAGGGTCTTTTTTATGCATTTTGAAAGTTCAAGTAGAGT
1 CTTAATTGCTTTTTTAAAAAAGTTTGAGGGTCTTTTTGATGCATTTTGAAAGATCAAGTAGAGT
*
32560793 CTTAATTGCTTTTTTTAAAAGAAGTTTGAGGTTCTTTTTGATGCATTTTGAAAGATCAAGT
1 CTTAATTGC-TTTTTTAAAA-AAGTTTGAGGGTCTTTTTGATGCATTTTGAAAGATCAAGT
32560854 TGTCAATTTA
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
64 9 0.17
65 8 0.15
66 36 0.68
ACGTcount: A:0.26, C:0.08, G:0.19, T:0.46
Consensus pattern (64 bp):
CTTAATTGCTTTTTTAAAAAAGTTTGAGGGTCTTTTTGATGCATTTTGAAAGATCAAGTAGAGT
Found at i:32563284 original size:22 final size:21
Alignment explanation
Indices: 32563259--32563322 Score: 69
Period size: 20 Copynumber: 3.0 Consensus size: 21
32563249 TATTAAGTAC
32563259 AATAATATATGACATATATAAA
1 AATAATATAT-ACATATATAAA
*
32563281 AATAATA-ATA-ATACTATATA
1 AATAATATATACATA-TATAAA
* *
32563301 AATAATATACACATGTATAAA
1 AATAATATATACATATATAAA
32563322 A
1 A
32563323 TAGGTATAAC
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
19 3 0.09
20 13 0.37
21 10 0.29
22 9 0.26
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.31
Consensus pattern (21 bp):
AATAATATATACATATATAAA
Found at i:32567341 original size:31 final size:31
Alignment explanation
Indices: 32567291--32567388 Score: 160
Period size: 31 Copynumber: 3.1 Consensus size: 31
32567281 TGATTCTGCA
32567291 AATAACATTATTTTTTTTCTTTTTTGGGTTTTG
1 AATAACATTA--TTTTTTCTTTTTTGGGTTTTG
*
32567324 AATAACATTATTTTTTCTTTTTTGAGTTTTG
1 AATAACATTATTTTTTCTTTTTTGGGTTTTG
*
32567355 AACAACATTATTTTTTCTTTTTTGGGTTTTG
1 AATAACATTATTTTTTCTTTTTTGGGTTTTG
32567386 AAT
1 AAT
32567389 GACCCATTCT
Statistics
Matches: 61, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
31 51 0.84
33 10 0.16
ACGTcount: A:0.21, C:0.07, G:0.11, T:0.60
Consensus pattern (31 bp):
AATAACATTATTTTTTCTTTTTTGGGTTTTG
Found at i:32570116 original size:13 final size:13
Alignment explanation
Indices: 32570098--32570122 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32570088 ACTTCCCACT
32570098 AGCTAAAACAACC
1 AGCTAAAACAACC
32570111 AGCTAAAACAAC
1 AGCTAAAACAAC
32570123 TAAGTTGAGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.28, G:0.08, T:0.08
Consensus pattern (13 bp):
AGCTAAAACAACC
Found at i:32573720 original size:17 final size:17
Alignment explanation
Indices: 32573674--32573725 Score: 68
Period size: 17 Copynumber: 2.9 Consensus size: 17
32573664 ATCCGACAAA
*
32573674 GCCCGATAAGTGATAAT
1 GCCCGATAAATGATAAT
*
32573691 GCCTGAAATAAATGATAAT
1 GCCCG--ATAAATGATAAT
32573710 GCCCGATAAATGATAA
1 GCCCGATAAATGATAA
32573726 ATGATAAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 15 0.50
19 15 0.50
ACGTcount: A:0.42, C:0.15, G:0.19, T:0.23
Consensus pattern (17 bp):
GCCCGATAAATGATAAT
Found at i:32573724 original size:7 final size:7
Alignment explanation
Indices: 32573714--32573754 Score: 82
Period size: 7 Copynumber: 5.9 Consensus size: 7
32573704 GATAATGCCC
32573714 GATAAAT
1 GATAAAT
32573721 GATAAAT
1 GATAAAT
32573728 GATAAAT
1 GATAAAT
32573735 GATAAAT
1 GATAAAT
32573742 GATAAAT
1 GATAAAT
32573749 GATAAA
1 GATAAA
32573755 AATGTTATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.59, C:0.00, G:0.15, T:0.27
Consensus pattern (7 bp):
GATAAAT
Found at i:32575499 original size:13 final size:13
Alignment explanation
Indices: 32575479--32575511 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
32575469 GAGACACGGG
32575479 CGTGTGTCTCAGC
1 CGTGTGTCTCAGC
*
32575492 CTTGTGTCTCAGC
1 CGTGTGTCTCAGC
32575505 CGTGTGT
1 CGTGTGT
32575512 GACACACGGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.06, C:0.27, G:0.30, T:0.36
Consensus pattern (13 bp):
CGTGTGTCTCAGC
Found at i:32576387 original size:26 final size:26
Alignment explanation
Indices: 32576344--32576404 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
32576334 AACTCCTTCC
* **
32576344 CCTCTCTCTTCATGTCGTCATTTCGA
1 CCTCTCCCTTCACATCGTCATTTCGA
** *
32576370 CCTCTCCCTTCACATCGTTGTTTTGA
1 CCTCTCCCTTCACATCGTCATTTCGA
32576396 CCTCTCCCT
1 CCTCTCCCT
32576405 ATCCTCTCCC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.10, C:0.39, G:0.10, T:0.41
Consensus pattern (26 bp):
CCTCTCCCTTCACATCGTCATTTCGA
Found at i:32576712 original size:5 final size:5
Alignment explanation
Indices: 32576697--32576778 Score: 69
Period size: 5 Copynumber: 16.2 Consensus size: 5
32576687 TTGTTCTTTC
* * *
32576697 TTTATT TTTAT TTTAT TTTAT TTTGT TAT-T TTTAT TTTAC TTTATT TTTAT
1 TTTA-T TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTA-T TTTAT
* * *
32576748 TTTAC TTTAT TATA- TTTAG TTTAT TATTAT T
1 TTTAT TTTAT TTTAT TTTAT TTTAT T-TTAT T
32576779 ATTTTCTTAT
Statistics
Matches: 62, Mismatches: 10, Indels: 8
0.77 0.12 0.10
Matches are distributed among these distances:
4 6 0.10
5 43 0.69
6 13 0.21
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (5 bp):
TTTAT
Found at i:32576718 original size:16 final size:16
Alignment explanation
Indices: 32576697--32576758 Score: 76
Period size: 16 Copynumber: 4.0 Consensus size: 16
32576687 TTGTTCTTTC
*
32576697 TTTATTTTTATTTTA-T
1 TTTA-TTTTACTTTATT
*
32576713 TTTATTTT--GTTATT
1 TTTATTTTACTTTATT
32576727 TTTATTTTACTTTATT
1 TTTATTTTACTTTATT
32576743 TTTATTTTACTTTATT
1 TTTATTTTACTTTATT
32576759 ATATTTAGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
13 3 0.07
14 9 0.22
15 4 0.10
16 25 0.61
ACGTcount: A:0.18, C:0.03, G:0.02, T:0.77
Consensus pattern (16 bp):
TTTATTTTACTTTATT
Found at i:32576771 original size:30 final size:28
Alignment explanation
Indices: 32576697--32576778 Score: 76
Period size: 30 Copynumber: 2.8 Consensus size: 28
32576687 TTGTTCTTTC
* *
32576697 TTTATTTTTATTTTATTTTATTTTGTTATT
1 TTTA-TTTTACTTTATTTT-TATTGTTATT
32576727 TTTATTTTACTTTATTTTTATT-TTACTT
1 TTTATTTTACTTTATTTTTATTGTTA-TT
* *
32576755 TATTATATTTAGTTTATTATTATT
1 T-TTAT-TTTACTTTATTTTTATT
32576779 ATTTTCTTAT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
27 3 0.07
28 6 0.13
29 17 0.38
30 19 0.42
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (28 bp):
TTTATTTTACTTTATTTTTATTGTTATT
Found at i:32583003 original size:27 final size:27
Alignment explanation
Indices: 32582973--32583150 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
32582963 ATATTGAGCC
* *
32582973 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
32583000 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
32583027 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
32583055 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
32583082 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
32583109 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
32583136 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32583151 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 104 0.81
28 25 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:32583112 original size:82 final size:81
Alignment explanation
Indices: 32582994--32583149 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
32582984 TGCTATATAA
* *
32582994 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
32583059 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
32583076 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
32583140 CACTTAGTGC
65 CACTTAGTGC
32583150 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:32591156 original size:226 final size:226
Alignment explanation
Indices: 32590750--32591208 Score: 900
Period size: 226 Copynumber: 2.0 Consensus size: 226
32590740 AGCTTGGTAA
*
32590750 GATATTCATTGTGATCTATTGCATCGACAATCAACTATCTTTTTATACCTTGTGAGCACTTAATA
1 GATA-TCATTGCGATCTATTGCATCGACAATCAACTATCTTTTTATACCTTGTGAGCACTTAATA
32590815 TTCTATTGAATATTTACCTTGGGGATCCCAGTTTATCATTATCATATTTTATCTTATCGTTTTCA
65 TTCTATTGAATATTTACCTTGGGGATCCCAGTTTATCATTATCATATTTTATCTTATCGTTTTCA
32590880 AGTTATTGCTTTGACAACTATTCTTACAATTTATCTCATTTCCATCTATTTATTGCACTGACATT
130 AGTTATTGCTTTGACAACTATTCTTACAATTTATCTCATTTCCATCTATTTATTGCACTGACATT
32590945 GAAAGACAAGAAACAATCATCCTCGTGGGATT
195 GAAAGACAAGAAACAATCATCCTCGTGGGATT
32590977 GATATCATTGCGATCTATTGCATCGACAATCAACTATCTTTTTATACCTTGTGAGCACTTAATAT
1 GATATCATTGCGATCTATTGCATCGACAATCAACTATCTTTTTATACCTTGTGAGCACTTAATAT
32591042 TCTATTGAATATTTACCTTGGGGATCCCAGTTTATCATTATCATATTTTATCTTATCGTTTTCAA
66 TCTATTGAATATTTACCTTGGGGATCCCAGTTTATCATTATCATATTTTATCTTATCGTTTTCAA
32591107 GTTATTGCTTTGACAACTATTCTTACAATTTATCTCATTTCCATCTATTTATTGCACTGACATTG
131 GTTATTGCTTTGACAACTATTCTTACAATTTATCTCATTTCCATCTATTTATTGCACTGACATTG
32591172 AAAGACAAGAAACAATCATCCTCGTGGGATT
196 AAAGACAAGAAACAATCATCCTCGTGGGATT
32591203 GATATC
1 GATATC
32591209 CGAAAGACTC
Statistics
Matches: 231, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
226 227 0.98
227 4 0.02
ACGTcount: A:0.28, C:0.19, G:0.12, T:0.41
Consensus pattern (226 bp):
GATATCATTGCGATCTATTGCATCGACAATCAACTATCTTTTTATACCTTGTGAGCACTTAATAT
TCTATTGAATATTTACCTTGGGGATCCCAGTTTATCATTATCATATTTTATCTTATCGTTTTCAA
GTTATTGCTTTGACAACTATTCTTACAATTTATCTCATTTCCATCTATTTATTGCACTGACATTG
AAAGACAAGAAACAATCATCCTCGTGGGATT
Found at i:32594357 original size:40 final size:39
Alignment explanation
Indices: 32594259--32594521 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
32594249 TCCTCGTTCA
* * * *
32594259 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
32594298 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
32594337 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
32594377 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
32594417 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
32594457 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
32594498 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
32594522 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:32594481 original size:120 final size:119
Alignment explanation
Indices: 32594259--32594521 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
32594249 TCCTCGTTCA
* * *
32594259 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
32594324 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
32594377 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
32594442 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
32594498 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
32594522 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:32594530 original size:41 final size:41
Alignment explanation
Indices: 32594453--32594530 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
32594443 TTTGTATCTC
* * *
32594453 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
32594494 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
32594531 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:32602374 original size:40 final size:40
Alignment explanation
Indices: 32602192--32602414 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
32602182 TCCTCGTTCA
* * * * *
32602192 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
32602231 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
32602271 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
32602311 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
32602351 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
32602391 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
32602415 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:32602423 original size:41 final size:41
Alignment explanation
Indices: 32602346--32602423 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
32602336 TTAGTATCTC
* * *
32602346 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
32602387 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
32602424 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:32605729 original size:254 final size:254
Alignment explanation
Indices: 32605280--32605785 Score: 708
Period size: 254 Copynumber: 2.0 Consensus size: 254
32605270 TGGTCCATAT
* * * *
32605280 TCTTAAGTAACATAAACGAGCTACTGCTTGGAGTATTGCTGATATTCGAGGCATTAGTCCATCTC
1 TCTTAAGCAACATAAACAAGCTACTGCTTGGAGTATTACTGATATTAGAGGCATTAGTCCATCTC
* * *
32605345 TTTGCATGTAAAAAATTAAGTTGGAAGATGAAGGTAAGCAATCGATTGAGCAGAAAAGAAGATTA
66 TTTGCATGTAAAAAATCAAGTTGGAAGATGAAAGCAAGCAATCGATTGAGCAGAAAAGAAGATTA
* * * * *
32605410 AATGAGAAGATGAAGGAAGTCGTTAAGAAAGATAATATAAACTGGCTTGATGCTGGAATTATTTA
131 AACGAGAAGATGAAGAAAGTCGTTAAGAAAGATAATACAAAATGGCTTGATGATGGAATTATTTA
* * * *
32605475 CCTTATTTCTGATAGCAATTGGGTAAGTCCAGTAAAATGCGTACCTAAAAAGAGTGGAA
196 CCTTATTTCTGACAACAATTGAGTAAGTCCAGTAAAATGCATACCTAAAAAGAGTGGAA
* * * *
32605534 TCTTAAGCAACATAAATAAGCTATTGCTTGGAGTATTACTGATATTAGAGGCATTAGTCCATTTT
1 TCTTAAGCAACATAAACAAGCTACTGCTTGGAGTATTACTGATATTAGAGGCATTAGTCCATCTC
* * * *
32605599 TTTTCATGTACAAAATCAAGTTGGAAGATTAAAGCAAGCAATCGATTGAGCAGCAAAGAAGATTA
66 TTTGCATGTAAAAAATCAAGTTGGAAGATGAAAGCAAGCAATCGATTGAGCAGAAAAGAAGATTA
* * *
32605664 AACGAGAAGATGAATAAAGTTGTTAAGAAGGA-AATTACAAAATGGCTTGATGATGGAATTATTT
131 AACGAGAAGATGAAGAAAGTCGTTAAGAAAGATAA-TACAAAATGGCTTGATGATGGAATTATTT
* * * **
32605728 ACCTTATTTTTTACAACAATTGAGTAAGTCTAGTGCAATGCATACCTAAAAAGAGTGG
195 ACCTTATTTCTGACAACAATTGAGTAAGTCCAGTAAAATGCATACCTAAAAAGAGTGG
32605786 CATCATTATG
Statistics
Matches: 219, Mismatches: 32, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
253 2 0.01
254 217 0.99
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.29
Consensus pattern (254 bp):
TCTTAAGCAACATAAACAAGCTACTGCTTGGAGTATTACTGATATTAGAGGCATTAGTCCATCTC
TTTGCATGTAAAAAATCAAGTTGGAAGATGAAAGCAAGCAATCGATTGAGCAGAAAAGAAGATTA
AACGAGAAGATGAAGAAAGTCGTTAAGAAAGATAATACAAAATGGCTTGATGATGGAATTATTTA
CCTTATTTCTGACAACAATTGAGTAAGTCCAGTAAAATGCATACCTAAAAAGAGTGGAA
Found at i:32608294 original size:93 final size:93
Alignment explanation
Indices: 32608182--32608353 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
32608172 CGCCCATAAG
* *
32608182 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
32608247 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
* *
32608275 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
*
32608340 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
32608354 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
TGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:32608350 original size:46 final size:46
Alignment explanation
Indices: 32608175--32608350 Score: 218
Period size: 46 Copynumber: 3.8 Consensus size: 46
32608165 TGTAACCCGC
* *
32608175 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
32608221 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCACAT
* *
32608271 CTC-T---TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
*
32608314 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
32608351 TGCTCAACCA
Statistics
Matches: 115, Mismatches: 4, Indels: 22
0.82 0.03 0.16
Matches are distributed among these distances:
42 3 0.03
43 6 0.05
44 1 0.01
46 66 0.57
47 29 0.25
49 1 0.01
50 6 0.05
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
Found at i:32608551 original size:62 final size:62
Alignment explanation
Indices: 32608454--32608577 Score: 239
Period size: 62 Copynumber: 2.0 Consensus size: 62
32608444 CTACGGAATG
*
32608454 CCGATACCGATACTCGGTAGTATTTCACATTTTCCAAGTATATCACATAATTTGACATATTA
1 CCGATACCGATACTCGGTAGTATTTCACATTTTCCAAATATATCACATAATTTGACATATTA
32608516 CCGATACCGATACTCGGTAGTATTTCACATTTTCCAAATATATCACATAATTTGACATATTA
1 CCGATACCGATACTCGGTAGTATTTCACATTTTCCAAATATATCACATAATTTGACATATTA
32608578 TCAAACAATT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.35
Consensus pattern (62 bp):
CCGATACCGATACTCGGTAGTATTTCACATTTTCCAAATATATCACATAATTTGACATATTA
Found at i:32610830 original size:15 final size:15
Alignment explanation
Indices: 32610801--32610850 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
32610791 CAAAGATAAC
*
32610801 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
32610815 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
32610830 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
32610845 AAGAAA
1 AAGAAA
32610851 CCAAAGATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.60, C:0.12, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:32622673 original size:16 final size:16
Alignment explanation
Indices: 32622652--32622684 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
32622642 ATAATGTTCG
32622652 AAATAATCCACAAGTA
1 AAATAATCCACAAGTA
32622668 AAATAATCCACAAGTA
1 AAATAATCCACAAGTA
32622684 A
1 A
32622685 TCATACATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.58, C:0.18, G:0.06, T:0.18
Consensus pattern (16 bp):
AAATAATCCACAAGTA
Found at i:32633062 original size:14 final size:13
Alignment explanation
Indices: 32633039--32633070 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
32633029 GGGATATCAA
32633039 AACAATAATTAAG
1 AACAATAATTAAG
32633052 AACACATAATTAAG
1 AACA-ATAATTAAG
32633066 AACAA
1 AACAA
32633071 GTTAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:32637231 original size:26 final size:26
Alignment explanation
Indices: 32637206--32637267 Score: 76
Period size: 26 Copynumber: 2.4 Consensus size: 26
32637196 GGGGGAAAAG
32637206 GAAAAAGAAGGGGAAGAA-AAAGAAA
1 GAAAAAGAAGGGGAAGAAGAAAGAAA
32637231 GAATAGAA-AA-GGGAAGAAGAAAGAAA
1 GAA-A-AAGAAGGGGAAGAAGAAAGAAA
32637257 GAAAAATGAAG
1 GAAAAA-GAAG
32637268 AAAAAGGATG
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
24 2 0.06
25 12 0.39
26 15 0.48
27 2 0.06
ACGTcount: A:0.66, C:0.00, G:0.31, T:0.03
Consensus pattern (26 bp):
GAAAAAGAAGGGGAAGAAGAAAGAAA
Found at i:32647845 original size:38 final size:38
Alignment explanation
Indices: 32647789--32647861 Score: 110
Period size: 38 Copynumber: 1.9 Consensus size: 38
32647779 TTCGGGTTAT
* *
32647789 ATCCCGCAAGCTTCGTGCTGGTATTATATCCGGGATAA
1 ATCCCGCAAGCCTAGTGCTGGTATTATATCCGGGATAA
* *
32647827 ATCCCGCAGGCCTAGTGCTGGTATTATATTCGGGA
1 ATCCCGCAAGCCTAGTGCTGGTATTATATCCGGGA
32647862 CTTCATGGCT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (38 bp):
ATCCCGCAAGCCTAGTGCTGGTATTATATCCGGGATAA
Found at i:32647917 original size:43 final size:43
Alignment explanation
Indices: 32647832--32648063 Score: 342
Period size: 43 Copynumber: 5.4 Consensus size: 43
32647822 GATAAATCCC
* * * * * *
32647832 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGACTTCATGGCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
32647873 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
32647916 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTTCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
32647959 GCAGGCTTAGTACCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
32648002 GCAGGCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
32648045 GCAGGCGTAATGCCGGTGA
1 GCAGGCTTAGTGCCGGTGA
32648064 AATGATATGT
Statistics
Matches: 173, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
41 15 0.09
42 2 0.01
43 156 0.90
ACGTcount: A:0.14, C:0.22, G:0.34, T:0.30
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:32649411 original size:234 final size:236
Alignment explanation
Indices: 32648764--32649471 Score: 1321
Period size: 236 Copynumber: 3.0 Consensus size: 236
32648754 AGTGTGATAA
32648764 GAATGCTGAACGTGCATTATGTGTTTGTGTGTATTCAGCCAGATGGCAATATACCTAGAATATGG
1 GAATGCTGAACGTGCATTATGTGTTTGTGTGTATTCAGCCAGATGGCAATATACCTAGAATATGG
32648829 CCACTTAAGAAATTGAATAATCGAAGTATAATTGCGTTTATTTGTTTGCATTGCTTAAGACTTAC
66 CCACTTAAGAAATTGAATAATCGAAGTATAATTGCGTTTATTTGTTTGCATTGCTTAAGACTTAC
*
32648894 TAAGCTTATGAAAGCTTACTCCGTTGTTACATTCCTCTGTTTTATAGATTGTTGACTTCGGCTAC
131 TAAGCTTATGAAAGCTTACTCCGTTGTTACATTCCTCTGTTTTATAGATTGTTGACTTCGGTTAC
32648959 CTGCTCGGGTTGGAGTTCGCCGGAGATATTATCACACTGTC
196 CTGCTCGGGTTGGAGTTCGCCGGAGATATTATCACACTGTC
32649000 GAATGCTGAACGTGCATTATGTGTTTGTGTGTATTCAGCCAGATGGCAATATACCTAGAATATGG
1 GAATGCTGAACGTGCATTATGTGTTTGTGTGTATTCAGCCAGATGGCAATATACCTAGAATATGG
32649065 CCACTTAAGAAATTGAATAATCGAAGTATAATTGCGTTTATTTGTTTGCATTGCTTAAGACTTAC
66 CCACTTAAGAAATTGAATAATCGAAGTATAATTGCGTTTATTTGTTTGCATTGCTTAAGACTTAC
*
32649130 TAAGCTTATGAAAGCTTACTCCGTTGTTACATTCCTCTATTTTATAGATTGTTGACTTCGGTTAC
131 TAAGCTTATGAAAGCTTACTCCGTTGTTACATTCCTCTGTTTTATAGATTGTTGACTTCGGTTAC
*
32649195 CTGCTCGGGTTGGAGTTCGCAGGAGATATTATCACACTGTC
196 CTGCTCGGGTTGGAGTTCGCCGGAGATATTATCACACTGTC
* *
32649236 GAATGCTGAACATGCATTATGTGTTTGTGTGTATTCGGCCAGATGGC-A-ATACCTAGAATATGG
1 GAATGCTGAACGTGCATTATGTGTTTGTGTGTATTCAGCCAGATGGCAATATACCTAGAATATGG
32649299 CCACTTAAGAAATTGAATAATCGAAGTATAATTGCGTTTATTTGTTTGCATTGCTTAAGACTTAC
66 CCACTTAAGAAATTGAATAATCGAAGTATAATTGCGTTTATTTGTTTGCATTGCTTAAGACTTAC
* * *
32649364 TAAGCTTATGAAAGCGTACTCTGTTGTTACATACCTCTGTTTTATAGATTGTTGACTTCGGTTAC
131 TAAGCTTATGAAAGCTTACTCCGTTGTTACATTCCTCTGTTTTATAGATTGTTGACTTCGGTTAC
*
32649429 CTGCTCGGGTTGGAGGTCGCCGGAGATATTATCACACTGTC
196 CTGCTCGGGTTGGAGTTCGCCGGAGATATTATCACACTGTC
32649470 GA
1 GA
32649472 GCTCACGCTA
Statistics
Matches: 461, Mismatches: 11, Indels: 2
0.97 0.02 0.00
Matches are distributed among these distances:
234 182 0.39
235 1 0.00
236 278 0.60
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (236 bp):
GAATGCTGAACGTGCATTATGTGTTTGTGTGTATTCAGCCAGATGGCAATATACCTAGAATATGG
CCACTTAAGAAATTGAATAATCGAAGTATAATTGCGTTTATTTGTTTGCATTGCTTAAGACTTAC
TAAGCTTATGAAAGCTTACTCCGTTGTTACATTCCTCTGTTTTATAGATTGTTGACTTCGGTTAC
CTGCTCGGGTTGGAGTTCGCCGGAGATATTATCACACTGTC
Found at i:32652737 original size:12 final size:13
Alignment explanation
Indices: 32652720--32652748 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
32652710 TGAAAGTCGA
32652720 ATATGTATATA-T
1 ATATGTATATATT
32652732 ATATGTATATATT
1 ATATGTATATATT
32652745 ATAT
1 ATAT
32652749 TTTGAAAGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (13 bp):
ATATGTATATATT
Found at i:32653919 original size:43 final size:43
Alignment explanation
Indices: 32653871--32654025 Score: 242
Period size: 43 Copynumber: 3.6 Consensus size: 43
32653861 GCTGGTATTA
* * *
32653871 TATTCGGCCCTTCGTGCCTAGTAGGCTTAGTGCCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
32653914 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCC-GATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAG-TGATGTG
*
32653957 TATTCGAGG-CTTCGTGCCTAGCAGGCTTCGTGCCAATGATGTG
1 TATTCG-GGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
32654000 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
32654026 GTAATGCCGG
Statistics
Matches: 104, Mismatches: 4, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
42 3 0.03
43 99 0.95
44 2 0.02
ACGTcount: A:0.14, C:0.25, G:0.31, T:0.30
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
Found at i:32656138 original size:112 final size:112
Alignment explanation
Indices: 32655931--32656266 Score: 412
Period size: 112 Copynumber: 3.0 Consensus size: 112
32655921 ATCAATGGAT
* * * *** * * *
32655931 AAGCATATGGTGTTGCATAACCCGGTTGTGGATAAAATGTGAGAATTGTTAGAGGTGGCGGATAC
1 AAGCATATGGTTTTGCATAACTCGATTGCAAATAAAATGTGAGAATTGTCAGAGGTGGTGGATAT
* *
32655996 ATTGGTGTTGTTCTTGGGATT-GACATGTATTATGGTGCTGGGGACAG
66 ATTGGTGTTGTTATTGGCATTGGA-ATGTATTATGGTGCTGGGGACAG
* * *
32656043 AAGCATATGGTTTTGCATAAC-CTATTTGCAAATAAAATGTGAGAATTGTCAGAGGTGTTGGATG
1 AAGCATATGGTTTTGCATAACTCGA-TTGCAAATAAAATGTGAGAATTGTCAGAGGTGGTGGATA
* * *
32656107 TATTGGTGTTGTTGTTGGCATTGGAAAGTATTATGGTGATGGGGACAG
65 TATTGGTGTTGTTATTGGCATTGGAATGTATTATGGTGCTGGGGACAG
* ** *
32656155 AAGCATATGGTTTTGCATAGCTCGATTGCGGATAAAATGTGAGAATTGTCAAAGGTGGTGGATAT
1 AAGCATATGGTTTTGCATAACTCGATTGCAAATAAAATGTGAGAATTGTCAGAGGTGGTGGATAT
* *
32656220 A-T--TGTTATTATTGGCATTGGCATGTATTATGGTGCTGGGGACAG
66 ATTGGTGTTGTTATTGGCATTGGAATGTATTATGGTGCTGGGGACAG
32656264 AAG
1 AAG
32656267 TGGTGCAAAA
Statistics
Matches: 194, Mismatches: 27, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
109 40 0.21
111 2 0.01
112 148 0.76
113 4 0.02
ACGTcount: A:0.26, C:0.09, G:0.32, T:0.33
Consensus pattern (112 bp):
AAGCATATGGTTTTGCATAACTCGATTGCAAATAAAATGTGAGAATTGTCAGAGGTGGTGGATAT
ATTGGTGTTGTTATTGGCATTGGAATGTATTATGGTGCTGGGGACAG
Found at i:32659329 original size:3 final size:3
Alignment explanation
Indices: 32659321--32659345 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
32659311 GAAAACGCGG
32659321 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
32659346 CTTTTAAGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:32659807 original size:24 final size:24
Alignment explanation
Indices: 32659780--32659831 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
32659770 TTAGTAAGTC
*
32659780 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
32659804 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
32659828 AAAT
1 AAAT
32659832 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:32662176 original size:3 final size:3
Alignment explanation
Indices: 32662168--32662198 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
32662158 AGAAAAAATA
*
32662168 AAT AAT AAT AAT GAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
32662199 GTGACAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:32662467 original size:4 final size:4
Alignment explanation
Indices: 32662431--32662485 Score: 65
Period size: 4 Copynumber: 13.8 Consensus size: 4
32662421 AACATAAAAC
* * ** *
32662431 TAAA AAAA TAGA TAAA TGTA TAAA TATA TAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
32662479 TAAA TAA
1 TAAA TAA
32662486 GGAAAATAAA
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
4 41 1.00
ACGTcount: A:0.69, C:0.00, G:0.04, T:0.27
Consensus pattern (4 bp):
TAAA
Found at i:32667069 original size:51 final size:51
Alignment explanation
Indices: 32666987--32667274 Score: 171
Period size: 51 Copynumber: 5.9 Consensus size: 51
32666977 ATATTCGTAT
* * *
32666987 CTTTAACCTATTCCACTACAACTTCAAGGAGATAAGACTTGTAGCTTGTAA
1 CTTTAATCTATTCCACTACAACTTTAGGGAGATAAGACTTGTAGCTTGTAA
* *
32667038 CTTTAGTCTATTCCACTACAACTTTAGGGAGATAAGACTTGTTA--TGGTAGA
1 CTTTAATCTATTCCACTACAACTTTAGGGAGATAAGACTTG-TAGCTTGTA-A
* * * * * * * *
32667089 -TTTAATCCGA-TCCACTGCAACCTCAGAGG-TATAGGACTTGTCGCCT-TAA
1 CTTTAAT-CTATTCCACTACAACTTTAG-GGAGATAAGACTTGTAGCTTGTAA
* * * * *
32667138 -TTT--GC---TCCACTGCAACTTTAGGGAGATAAGATTTGTAACTTGTAG
1 CTTTAATCTATTCCACTACAACTTTAGGGAGATAAGACTTGTAGCTTGTAA
* ** * *
32667183 CTTTAATCTGTTCCACTGTAACTTTAGGGAAATAAGA-TT-T-GC---TAT
1 CTTTAATCTATTCCACTACAACTTTAGGGAGATAAGACTTGTAGCTTGTAA
** * *
32667228 CTTTAATCTGCTCCACTACAACTTTAGGGAGATGAGATTTGTAGCTT
1 CTTTAATCTATTCCACTACAACTTTAGGGAGATAAGACTTGTAGCTT
32667275 CAACCCACTC
Statistics
Matches: 183, Mismatches: 35, Indels: 39
0.71 0.14 0.15
Matches are distributed among these distances:
43 2 0.01
44 25 0.14
45 36 0.20
46 6 0.03
47 1 0.01
48 4 0.02
49 6 0.03
50 35 0.19
51 66 0.36
52 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.34
Consensus pattern (51 bp):
CTTTAATCTATTCCACTACAACTTTAGGGAGATAAGACTTGTAGCTTGTAA
Found at i:32667250 original size:96 final size:96
Alignment explanation
Indices: 32667049--32667635 Score: 480
Period size: 96 Copynumber: 6.3 Consensus size: 96
32667039 TTTAGTCTAT
* * * * * * * *
32667049 TCCACTACAACTTTAGGGAGATAAGACTTGTTA-TGGTAGATTTAATCCGATCCACTGCAACCTC
1 TCCACTGCAACTTTAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTGCAACTTC
* * * ** * *
32667113 AGAGG-TATAGGACTTG-TCGCCTTAATTTGC
66 AG-GGAAATAAGATTTGCTATCTTTAATCTGC
* *
32667143 TCCACTGCAACTTTAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTGTAACTTT
1 TCCACTGCAACTTTAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTGCAACTTC
32667208 AGGGAAATAAGATTTGCTATCTTTAATCTGC
66 AGGGAAATAAGATTTGCTATCTTTAATCTGC
* * * * ***
32667239 TCCACTACAACTTTAGGGAGAT--GA---G--ATTTGTAGCTTCAACCCACTCCACTGCAACTTC
1 TCCACTGCAACTTTAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTGCAACTTC
* *
32667297 AGGGAGATAAG--TT-C--TCTTTAATTTGC
66 AGGGAAATAAGATTTGCTATCTTTAATCTGC
* ** * * * * * *
32667323 TCCATTGCATGTTCAAGGAGATAGGATATGTAACTTGTAGCTTTAATATGTTCCATTGCAACTTC
1 TCCACTGCAACTTTAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTGCAACTTC
* *
32667388 AGGGAAATAAGATTCGCTATCTTCAATCTGC
66 AGGGAAATAAGATTTGCTATCTTTAATCTGC
** * * * * **
32667419 TTTACTGCATCTTCAGGGAGATAAGATTTGTAACTTATAGCTTTAATCTATTCCACTATAACTTC
1 TCCACTGCAACTTTAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTGCAACTTC
* * * *
32667484 AGGGAAATAAGACTCGCTACCTTTAATATGC
66 AGGGAAATAAGATTTGCTATCTTTAATCTGC
* * * *
32667515 TCCACTGCAACTTCAGGGAGATAAGATTTG-----TG--GCTTTAATATGCTCCACTGCAACTTT
1 TCCACTGCAACTTTAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTGCAACTTC
* * * **
32667573 AGAGAGATAATATTTGCTATCTACAATCTGC
66 AGGGAAATAAGATTTGCTATCTTTAATCTGC
*
32667604 TCCACTGCAACTTTAGGGAGATAAGTTTTGTA
1 TCCACTGCAACTTTAGGGAGATAAGATTTGTA
32667636 GATTCAATCT
Statistics
Matches: 392, Mismatches: 84, Indels: 37
0.76 0.16 0.07
Matches are distributed among these distances:
84 27 0.07
86 3 0.01
87 2 0.01
89 106 0.27
91 37 0.09
93 1 0.00
94 35 0.09
95 34 0.09
96 147 0.38
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (96 bp):
TCCACTGCAACTTTAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTGCAACTTC
AGGGAAATAAGATTTGCTATCTTTAATCTGC
Found at i:32667251 original size:45 final size:45
Alignment explanation
Indices: 32667134--32667764 Score: 398
Period size: 45 Copynumber: 13.7 Consensus size: 45
32667124 ACTTGTCGCC
* *
32667134 TTAATTTGCTCCACTGCAACTTTAGGGAGATAAGATTTGTAACTTGTAGCT
1 TTAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTG---C---TATCT
* * *
32667185 TTAATCTGTTCCACTGTAACTTTAGGGAAATAAGATTTGCTATCT
1 TTAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCTATCT
* * *
32667230 TTAATCTGCTCCACTACAACTTTAGGGAGATGAGATTTG-TAGCT
1 TTAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCTATCT
* * ** *
32667274 TCAACCCACTCCACTGCAACTTCAGGGAGATAAG--TT-C--TCT
1 TTAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCTATCT
* * ** * * * * *
32667314 TTAATTTGCTCCATTGCATGTTCAAGGAGATAGGATATGTAACTTGTAGCT
1 TTAATCTGCTCCACTGCAACTTTAGGGAGATAAGAT-T-T-GC---TATCT
* * * * * *
32667365 TTAATATGTTCCATTGCAACTTCAGGGAAATAAGATTCGCTATCT
1 TTAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCTATCT
* ** * *
32667410 TCAATCTGCTTTACTGCATCTTCAGGGAGATAAGATTTGTAACTTATAGCT
1 TTAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTG---C-TAT--CT
** ** * * * * *
32667461 TTAATCTATTCCACTATAACTTCAGGGAAATAAGACTCGCTACCT
1 TTAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCTATCT
* * **
32667506 TTAATATGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TGGCT
1 TTAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCTATCT
* * *
32667550 TTAATATGCTCCACTGCAACTTTAGAGAGATAATATTTGCTATCT
1 TTAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCTATCT
** * **
32667595 ACAATCTGCTCCACTGCAACTTTAGGGAGATAAGTTTTG-TAGAT
1 TTAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCTATCT
* * *
32667639 TCAATCTGCTCTACTGCAACTTTCAGAGAGATAAGATTTGCTACTTGTAGCT
1 TTAATCTGCTCCACTGCAACTTT-AGGGAGATAAGATTTGCTA----T--CT
* * * *
32667691 TTAATCTGTTCCACTGTAACTTTAAGGAAATAAGATTTGC-ATCT
1 TTAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCTATCT
* * *
32667735 TCAATCTTCTCCACTGCAACTTCAGGGAGA
1 TTAATCTGCTCCACTGCAACTTTAGGGAGA
32667765 CACTATAAGA
Statistics
Matches: 449, Mismatches: 104, Indels: 61
0.73 0.17 0.10
Matches are distributed among these distances:
40 26 0.06
42 2 0.00
43 1 0.00
44 120 0.27
45 155 0.35
46 4 0.01
47 2 0.00
48 4 0.01
49 3 0.01
50 2 0.00
51 110 0.24
52 20 0.04
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (45 bp):
TTAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCTATCT
Found at i:32667614 original size:89 final size:90
Alignment explanation
Indices: 32667512--32667681 Score: 261
Period size: 89 Copynumber: 1.9 Consensus size: 90
32667502 ACCTTTAATA
* * *
32667512 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTGGCTTTAATATGCTCCACTGCAACTTT-AGA
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGATTCAATATGCTCCACTGCAACTTTCAGA
*
32667576 GAGATAATATTTGCTATCTACAATC
66 GAGATAAGATTTGCTATCTACAATC
* * * *
32667601 TGCTCCACTGCAACTTTAGGGAGATAAGTTTTGTAGATTCAATCTGCTCTACTGCAACTTTCAGA
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGATTCAATATGCTCCACTGCAACTTTCAGA
32667666 GAGATAAGATTTGCTA
66 GAGATAAGATTTGCTA
32667682 CTTGTAGCTT
Statistics
Matches: 72, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
89 54 0.75
90 18 0.25
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (90 bp):
TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGATTCAATATGCTCCACTGCAACTTTCAGA
GAGATAAGATTTGCTATCTACAATC
Found at i:32667697 original size:52 final size:51
Alignment explanation
Indices: 32667631--32667730 Score: 128
Period size: 52 Copynumber: 1.9 Consensus size: 51
32667621 GAGATAAGTT
* * *
32667631 TTGTAGATTCAATCTGCTCTACTGCAACTTTCAGAGAGATAAGATTTGCTAC
1 TTGTAGATTCAATCTGCTCCACTGCAACTTTAAG-GAAATAAGATTTGCTAC
* * * *
32667683 TTGTAGCTTTAATCTGTTCCACTGTAACTTTAAGGAAATAAGATTTGC
1 TTGTAGATTCAATCTGCTCCACTGCAACTTTAAGGAAATAAGATTTGC
32667731 ATCTTCAATC
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
51 13 0.32
52 28 0.68
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (51 bp):
TTGTAGATTCAATCTGCTCCACTGCAACTTTAAGGAAATAAGATTTGCTAC
Done.