Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 102 of 310
Found at i:32668154 original size:105 final size:105
Alignment explanation
Indices: 32667968--32668157 Score: 245
Period size: 105 Copynumber: 1.8 Consensus size: 105
32667958 TATGTTAATG
** * * * **
32667968 AGCTATAGAAGCATTAGTGGTGTTTCACTTAAAACACCGCAATATATCAGAATTAGCGGCGTTTC
1 AGCTATAGAAGCATTAGTGGCATTTCACTAAAAACACCGCAATATATAAAAATTAGCGGCGCCTC
* * *
32668033 TTTAAAAACGCTGCAAAAGTCTTGAGAGAAACGATGATGT
66 TATAAAAACACCGCAAAAGTCTTGAGAGAAACGATGATGT
* * ** *
32668073 AGCTATAGAGGCATTAGTGGCATTTTACTAAAAATGCCGCAATATATAAAAATTAGCGGTGCCTC
1 AGCTATAGAAGCATTAGTGGCATTTCACTAAAAACACCGCAATATATAAAAATTAGCGGCGCCTC
32668138 TATAAAAACACCGCAAAAGT
66 TATAAAAACACCGCAAAAGT
32668158 GGCTATAGAG
Statistics
Matches: 70, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
105 70 1.00
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.26
Consensus pattern (105 bp):
AGCTATAGAAGCATTAGTGGCATTTCACTAAAAACACCGCAATATATAAAAATTAGCGGCGCCTC
TATAAAAACACCGCAAAAGTCTTGAGAGAAACGATGATGT
Found at i:32669088 original size:15 final size:15
Alignment explanation
Indices: 32669070--32669101 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
32669060 TTTAATTTAG
32669070 AAGATAAATATAAAT
1 AAGATAAATATAAAT
*
32669085 AAGATAAATATATAT
1 AAGATAAATATAAAT
32669100 AA
1 AA
32669102 ATTATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (15 bp):
AAGATAAATATAAAT
Found at i:32669742 original size:37 final size:37
Alignment explanation
Indices: 32669686--32669806 Score: 147
Period size: 37 Copynumber: 3.3 Consensus size: 37
32669676 CCCCAAATCT
* * *
32669686 CCCATGCATTGCAACCCATCTCCTCCGTCGCCTTCTC
1 CCCATGCATCGCAAACCATCTCCTCCATCGCCTTCTC
*
32669723 CCCATGCATCGCAAACCATCCCCTCCATCGCCTT-TGC
1 CCCATGCATCGCAAACCATCTCCTCCATCGCCTTCT-C
* *
32669760 CCCGTGCATCGC-AACTCATCTCCTCCATCGCCTTCGC
1 CCCATGCATCGCAAAC-CATCTCCTCCATCGCCTTCTC
*
32669797 CCCGTGCATC
1 CCCATGCATC
32669807 TGCTGCATAG
Statistics
Matches: 74, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
36 4 0.05
37 70 0.95
ACGTcount: A:0.15, C:0.49, G:0.12, T:0.24
Consensus pattern (37 bp):
CCCATGCATCGCAAACCATCTCCTCCATCGCCTTCTC
Found at i:32671911 original size:14 final size:15
Alignment explanation
Indices: 32671889--32671925 Score: 67
Period size: 14 Copynumber: 2.5 Consensus size: 15
32671879 TTACTATAAT
32671889 AATTATATGAAGTAA
1 AATTATATGAAGTAA
32671904 AA-TATATGAAGTAA
1 AATTATATGAAGTAA
32671918 AATTATAT
1 AATTATAT
32671926 TATATACTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.35
Consensus pattern (15 bp):
AATTATATGAAGTAA
Found at i:32673405 original size:19 final size:17
Alignment explanation
Indices: 32673367--32673402 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
32673357 AATGTTTCTA
32673367 ATTCAAAAGTAATATAT
1 ATTCAAAAGTAATATAT
32673384 ATTCAAAAGTAATATAT
1 ATTCAAAAGTAATATAT
32673401 AT
1 AT
32673403 ATTTTTTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.36
Consensus pattern (17 bp):
ATTCAAAAGTAATATAT
Found at i:32673456 original size:16 final size:16
Alignment explanation
Indices: 32673435--32673799 Score: 158
Period size: 16 Copynumber: 23.0 Consensus size: 16
32673425 TCACATAATT
*
32673435 TACATAATTTACATAA
1 TACATAACTTACATAA
32673451 TACATAACTTACATAA
1 TACATAACTTACATAA
** *
32673467 TTTA-AAGTT-CA-AA
1 TACATAACTTACATAA
*
32673480 TTTCATAACTTACATAA
1 -TACATAACTTACATAA
*
32673497 TTTACTTAACTTACATAA
1 --TACATAACTTACATAA
*
32673515 TACATAGCTTACATAA
1 TACATAACTTACATAA
*
32673531 TACATGACTTACATAA
1 TACATAACTTACATAA
** **
32673547 TTTA-AAGAT-CA-AA
1 TACATAACTTACATAA
* *
32673560 TTTCATAACTTACATGA
1 -TACATAACTTACATAA
32673577 TACATAACTTACATAA
1 TACATAACTTACATAA
* **
32673593 T--TTAA-AGACCA-AA
1 TACATAACTTA-CATAA
* *
32673606 TCTCATAAGTTACATAA
1 T-ACATAACTTACATAA
32673623 TTTACATAACTTACATAA
1 --TACATAACTTACATAA
*
32673641 TA-ATTTAAAGTT-CA-AA
1 TACA--T-AACTTACATAA
*
32673657 TTTCATAACTTACATAA
1 -TACATAACTTACATAA
** **
32673674 TTTA-AAGAT-CA-AA
1 TACATAACTTACATAA
*
32673687 TTTCATAACTTACATAA
1 -TACATAACTTACATAA
32673704 TACATAACTTACATAA
1 TACATAACTTACATAA
* *
32673720 TTTACA-GA--T-CAAAA
1 --TACATAACTTACATAA
*
32673734 TTCATAACTTACATAA
1 TACATAACTTACATAA
32673750 TTTACATAACTTACATAA
1 --TACATAACTTACATAA
32673768 TACATAACTTACATAA
1 TACATAACTTACATAA
* *
32673784 TAAATGACTTACATAA
1 TACATAACTTACATAA
32673800 CTTAATAATA
Statistics
Matches: 264, Mismatches: 49, Indels: 72
0.69 0.13 0.19
Matches are distributed among these distances:
12 3 0.01
13 11 0.04
14 24 0.09
15 26 0.10
16 132 0.50
17 15 0.06
18 52 0.20
19 1 0.00
ACGTcount: A:0.46, C:0.16, G:0.03, T:0.35
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:32673533 original size:80 final size:78
Alignment explanation
Indices: 32673443--32673593 Score: 248
Period size: 80 Copynumber: 1.9 Consensus size: 78
32673433 TTTACATAAT
* *
32673443 TTACATAATACATAACTTACATAATTTAAAGTTCAAATTTCATAACTTACATAATTTACTTAACT
1 TTACATAATACATAACTTACATAATTTAAAGATCAAATTTCATAACTTACATAA--TACATAACT
32673508 TACATAATACATAGC
64 TACATAATACATAGC
* *
32673523 TTACATAATACATGACTTACATAATTTAAAGATCAAATTTCATAACTTACATGATACATAACTTA
1 TTACATAATACATAACTTACATAATTTAAAGATCAAATTTCATAACTTACATAATACATAACTTA
32673588 CATAAT
66 CATAAT
32673594 TTAAAGACCA
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
78 16 0.24
80 51 0.76
ACGTcount: A:0.44, C:0.16, G:0.03, T:0.36
Consensus pattern (78 bp):
TTACATAATACATAACTTACATAATTTAAAGATCAAATTTCATAACTTACATAATACATAACTTA
CATAATACATAGC
Found at i:32673587 original size:46 final size:46
Alignment explanation
Indices: 32673517--32673674 Score: 208
Period size: 46 Copynumber: 3.3 Consensus size: 46
32673507 TTACATAATA
* *
32673517 CATAGCTTACATAATACATGACTTACATAATTTAAAGATCAAATTT
1 CATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTT
* * *
32673563 CATAACTTACATGATACATAACTTACATAATTTAAAGACCAAATCT
1 CATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTT
* *
32673609 CATAAGTTACATAATTTACATAACTTACATAATAATTTAAAGTTCAAATTT
1 CATAACTTACATAA--TACATAACTTAC---ATAATTTAAAGATCAAATTT
32673660 CATAACTTACATAAT
1 CATAACTTACATAAT
32673675 TTAAAGATCA
Statistics
Matches: 96, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
46 53 0.55
48 12 0.12
49 1 0.01
51 30 0.31
ACGTcount: A:0.45, C:0.16, G:0.04, T:0.35
Consensus pattern (46 bp):
CATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTT
Found at i:32673613 original size:30 final size:30
Alignment explanation
Indices: 32673579--32673704 Score: 126
Period size: 30 Copynumber: 4.5 Consensus size: 30
32673569 TTACATGATA
*
32673579 CATAACTTACATAATTTAAAGACCAAATCT
1 CATAACTTACATAATTTAAAGATCAAATCT
* *
32673609 CATAAGTTACATAATTT--ACAT--AA-CT
1 CATAACTTACATAATTTAAAGATCAAATCT
* * *
32673634 --T-ACATA-ATAATTTAAAGTTCAAATTT
1 CATAACTTACATAATTTAAAGATCAAATCT
*
32673660 CATAACTTACATAATTTAAAGATCAAATTT
1 CATAACTTACATAATTTAAAGATCAAATCT
32673690 CATAACTTACATAAT
1 CATAACTTACATAAT
32673705 ACATAACTTA
Statistics
Matches: 77, Mismatches: 10, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
21 7 0.09
22 3 0.04
23 3 0.04
25 4 0.05
26 3 0.04
28 3 0.04
29 4 0.05
30 50 0.65
ACGTcount: A:0.46, C:0.15, G:0.03, T:0.36
Consensus pattern (30 bp):
CATAACTTACATAATTTAAAGATCAAATCT
Found at i:32673713 original size:46 final size:47
Alignment explanation
Indices: 32673655--32673768 Score: 185
Period size: 46 Copynumber: 2.4 Consensus size: 47
32673645 TTAAAGTTCA
* *
32673655 AATTTCATAACTTACATAATTTAAAGATCAAATTTCATAACTTACAT
1 AATTACATAACTTACATAATTTAAAGATCAAAATTCATAACTTACAT
*
32673702 AA-TACATAACTTACATAATTTACAGATCAAAATTCATAACTTACAT
1 AATTACATAACTTACATAATTTAAAGATCAAAATTCATAACTTACAT
32673748 AATTTACATAACTTACATAAT
1 AA-TTACATAACTTACATAAT
32673769 ACATAACTTA
Statistics
Matches: 62, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
46 43 0.69
47 2 0.03
48 17 0.27
ACGTcount: A:0.46, C:0.16, G:0.02, T:0.36
Consensus pattern (47 bp):
AATTACATAACTTACATAATTTAAAGATCAAAATTCATAACTTACAT
Found at i:32673739 original size:127 final size:126
Alignment explanation
Indices: 32673431--32673804 Score: 524
Period size: 127 Copynumber: 3.0 Consensus size: 126
32673421 CAACTCACAT
* * *
32673431 AATTTACATAATTTACATAATACATAACTTACATAATTTAAAGTTCAAATTTCATAACTTACATA
1 AATTT-CATAACTTACATAATACATAACTTACATAATTTAAAGATCAAAATTCATAACTTACATA
* *
32673496 ATTTACTTAACTTACATAATACATAGCTTACATAATACATGACTTACATAATTTAAAGATCA
65 ATTTACATAACTTACATAATACATAGCTTACATAATACATAACTTACATAATTTAAAGATCA
* * *
32673558 AATTTCATAACTTACATGATACATAACTTACATAATTTAAAGA-CCAAATCTCATAAGTTACATA
1 AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCAAAAT-TCATAACTTACATA
*
32673622 ATTTACATAACTTACATAATA-ATTTAAAG-TT-CA-AATTTCATAACTTACATAATTTAAAGAT
65 ATTTACATAACTTACATAATACA--T--AGCTTACATAA-TACATAACTTACATAATTTAAAGAT
32673683 CA
125 CA
*
32673685 AATTTCATAACTTACATAATACATAACTTACATAATTTACAGATCAAAATTCATAACTTACATAA
1 AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCAAAATTCATAACTTACATAA
* * * *
32673750 TTTACATAACTTACATAATACATAACTTACATAATAAATGACTTACATAACTTAA
66 TTTACATAACTTACATAATACATAGCTTACATAATACATAACTTACATAATTTAA
32673805 TAATACTTAT
Statistics
Matches: 218, Mismatches: 18, Indels: 23
0.84 0.07 0.09
Matches are distributed among these distances:
124 1 0.00
125 7 0.03
126 90 0.41
127 110 0.50
128 8 0.04
129 2 0.01
ACGTcount: A:0.46, C:0.16, G:0.03, T:0.36
Consensus pattern (126 bp):
AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCAAAATTCATAACTTACATAA
TTTACATAACTTACATAATACATAGCTTACATAATACATAACTTACATAATTTAAAGATCA
Found at i:32673802 original size:9 final size:9
Alignment explanation
Indices: 32673422--32673807 Score: 139
Period size: 9 Copynumber: 43.2 Consensus size: 9
32673412 GTTCACCAGC
*
32673422 AACTCACAT
1 AACTTACAT
*
32673431 AATTTACAT
1 AACTTACAT
*
32673440 AATTTACAT
1 AACTTACAT
32673449 AA--TACAT
1 AACTTACAT
32673456 AACTTACAT
1 AACTTACAT
* *
32673465 AATTTAAAGTT
1 AACTTACA--T
* *
32673476 CAAATTTCAT
1 -AACTTACAT
32673486 AACTTACAT
1 AACTTACAT
* *
32673495 AATTTACTT
1 AACTTACAT
32673504 AACTTACAT
1 AACTTACAT
32673513 AA--TACAT
1 AACTTACAT
*
32673520 AGCTTACAT
1 AACTTACAT
32673529 AA--TACAT
1 AACTTACAT
*
32673536 GACTTACAT
1 AACTTACAT
* *
32673545 AATTTAAAGAT
1 AACTT--ACAT
* *
32673556 CAAATTTCAT
1 -AACTTACAT
32673566 AACTTACAT
1 AACTTACAT
*
32673575 GA--TACAT
1 AACTTACAT
32673582 AACTTACAT
1 AACTTACAT
* * *
32673591 AATTTAAAGACC
1 AACTT--ACA-T
*
32673603 AAATCT-CAT
1 AACT-TACAT
*
32673612 AAGTTACAT
1 AACTTACAT
*
32673621 AATTTACAT
1 AACTTACAT
32673630 AACTTACAT
1 AACTTACAT
* **
32673639 AA-TAATTT
1 AACTTACAT
*
32673647 AAAGTT-CA-
1 -AACTTACAT
*
32673655 AA-TTTCAT
1 AACTTACAT
32673663 AACTTACAT
1 AACTTACAT
* *
32673672 AATTTAAAGAT
1 AACTT--ACAT
* *
32673683 CAAATTTCAT
1 -AACTTACAT
32673693 AACTTACAT
1 AACTTACAT
32673702 AA--TACAT
1 AACTTACAT
32673709 AACTTACAT
1 AACTTACAT
*
32673718 AATTTACAGAT
1 AACTTAC--AT
*
32673729 CAAAATT-CAT
1 --AACTTACAT
32673739 AACTTACAT
1 AACTTACAT
*
32673748 AATTTACAT
1 AACTTACAT
32673757 AACTTACAT
1 AACTTACAT
32673766 AA--TACAT
1 AACTTACAT
32673773 AACTTACAT
1 AACTTACAT
*
32673782 AA--TAAAT
1 AACTTACAT
*
32673789 GACTTACAT
1 AACTTACAT
32673798 AACTTA-AT
1 AACTTACAT
32673806 AA
1 AA
32673808 TACTTATAAA
Statistics
Matches: 281, Mismatches: 58, Indels: 77
0.68 0.14 0.19
Matches are distributed among these distances:
6 2 0.01
7 48 0.17
8 14 0.05
9 175 0.62
10 9 0.03
11 11 0.04
12 17 0.06
13 5 0.02
ACGTcount: A:0.46, C:0.16, G:0.03, T:0.35
Consensus pattern (9 bp):
AACTTACAT
Found at i:32678877 original size:13 final size:14
Alignment explanation
Indices: 32678861--32678889 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
32678851 TTATAAATAT
32678861 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
32678874 TTATAATGGTTTAA
1 TTATAATGGTTTAA
32678888 TT
1 TT
32678890 CGTCATTACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:32679351 original size:21 final size:21
Alignment explanation
Indices: 32679299--32679353 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
32679289 ACTTAGAGCG
* *
32679299 GAGGCAGTAGAGAGGGAGGCA
1 GAGGCAGCAGCGAGGGAGGCA
*
32679320 GCGGCAGCAGCGAGGGAGGCA
1 GAGGCAGCAGCGAGGGAGGCA
*
32679341 GAGGTAGCAGCGA
1 GAGGCAGCAGCGA
32679354 TGGCAGCAGA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.29, C:0.16, G:0.51, T:0.04
Consensus pattern (21 bp):
GAGGCAGCAGCGAGGGAGGCA
Found at i:32679362 original size:21 final size:21
Alignment explanation
Indices: 32679310--32679364 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
32679300 AGGCAGTAGA
* * *
32679310 GAGGGAGGCAGCGGCAGCAGC
1 GAGGCAGGCAGAGGTAGCAGC
*
32679331 GAGGGAGGCAGAGGTAGCAGC
1 GAGGCAGGCAGAGGTAGCAGC
32679352 GATGGCA-GCAGAG
1 GA-GGCAGGCAGAG
32679365 CAGAGCAGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
21 27 0.90
22 3 0.10
ACGTcount: A:0.27, C:0.18, G:0.51, T:0.04
Consensus pattern (21 bp):
GAGGCAGGCAGAGGTAGCAGC
Found at i:32679630 original size:31 final size:31
Alignment explanation
Indices: 32679595--32679660 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
32679585 TGTATTTTTT
* *
32679595 ATGCTACATTTGTTGGTTTTGGCTGGATTTC
1 ATGCTACATTTGTTCGTTTTGGCTGGATTTA
* * *
32679626 ATGCTATATTTGTTCTTTTTGGTTGGATTTA
1 ATGCTACATTTGTTCGTTTTGGCTGGATTTA
32679657 ATGC
1 ATGC
32679661 AGGAAGGGTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.15, C:0.11, G:0.23, T:0.52
Consensus pattern (31 bp):
ATGCTACATTTGTTCGTTTTGGCTGGATTTA
Found at i:32683352 original size:19 final size:19
Alignment explanation
Indices: 32683328--32683367 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
32683318 GTAATTTAGC
32683328 CTCCCTAAGAAACCTCGAA
1 CTCCCTAAGAAACCTCGAA
32683347 CTCCCTAAGAAACCTCGAA
1 CTCCCTAAGAAACCTCGAA
32683366 CT
1 CT
32683368 TCTTTTTGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.35, C:0.38, G:0.10, T:0.17
Consensus pattern (19 bp):
CTCCCTAAGAAACCTCGAA
Found at i:32694307 original size:3 final size:3
Alignment explanation
Indices: 32694301--32694346 Score: 74
Period size: 3 Copynumber: 15.3 Consensus size: 3
32694291 GAAAAAAATA
* *
32694301 AAT AAT AAC AAT GAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
32694347 GTGACAAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:32694600 original size:16 final size:16
Alignment explanation
Indices: 32694581--32694625 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
32694571 AAAAACACAA
*
32694581 AAATAAAAAAATAGAT
1 AAATAAATAAATAGAT
** *
32694597 AAATGTATAAATATAT
1 AAATAAATAAATAGAT
32694613 AAATAAATAAATA
1 AAATAAATAAATA
32694626 CAAAGGAAAA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.04, T:0.27
Consensus pattern (16 bp):
AAATAAATAAATAGAT
Found at i:32697266 original size:22 final size:20
Alignment explanation
Indices: 32697218--32697266 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 20
32697208 TCTTAACTAC
*
32697218 TCAAATCCATAGCCAAAACA
1 TCAAATCAATAGCCAAAACA
32697238 TACCAAATCAATATGCCAAAATCA
1 T--CAAATCAATA-GCCAAAA-CA
32697262 TCAAA
1 TCAAA
32697267 CTTACATAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
20 1 0.04
22 13 0.54
23 7 0.29
24 3 0.12
ACGTcount: A:0.51, C:0.27, G:0.04, T:0.18
Consensus pattern (20 bp):
TCAAATCAATAGCCAAAACA
Found at i:32698050 original size:43 final size:42
Alignment explanation
Indices: 32697997--32698146 Score: 185
Period size: 43 Copynumber: 3.5 Consensus size: 42
32697987 TATCCCAAAT
* *
32697997 ATGGTCTTACATGTTGTCACATATCGATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAGTCACA-ATCGATGCCAATGTCCCAGAC
* *
32698040 ATGGTCTTACACGAAGTCATACAA-CGATGCCAATGTCCCAGGC
1 ATGGTCTTACACGTAGTC--ACAATCGATGCCAATGTCCCAGAC
* *
32698083 ATGGTCTTACACGTAATCACAATACAATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAGTCACAAT-CGATGCCAATGTCCCAGAC
* *
32698126 ATGGTCTTACATGTAATCACA
1 ATGGTCTTACACGTAGTCACA
32698147 TCTCGGTAAT
Statistics
Matches: 94, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
41 4 0.04
43 86 0.91
44 1 0.01
45 3 0.03
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (42 bp):
ATGGTCTTACACGTAGTCACAATCGATGCCAATGTCCCAGAC
Found at i:32699553 original size:7 final size:7
Alignment explanation
Indices: 32699541--32699565 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
32699531 TATATTTCCC
32699541 ATTATTA
1 ATTATTA
32699548 ATTATTA
1 ATTATTA
32699555 ATTATTA
1 ATTATTA
32699562 ATTA
1 ATTA
32699566 GTTTTAACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
ATTATTA
Found at i:32700088 original size:17 final size:18
Alignment explanation
Indices: 32700066--32700177 Score: 85
Period size: 17 Copynumber: 6.3 Consensus size: 18
32700056 ATGGAAATAT
32700066 AATCTTCA-ATGATATGC
1 AATCTTCATATGATATGC
32700083 AATCTTCGATATGATA--C
1 AATCTTC-ATATGATATGC
*
32700100 AATCTTAGATATGAT-TGC
1 AATCTT-CATATGATATGC
*
32700118 AATCTTAGATATGATA--C
1 AATCTT-CATATGATATGC
*
32700135 AATCTTAGATATGAT-TGC
1 AATCTT-CATATGATATGC
* *
32700153 AATCTTAGATATGATATAC
1 AATCTT-CATATGATATGC
32700172 AATCTT
1 AATCTT
32700178 AGAAGATATG
Statistics
Matches: 84, Mismatches: 2, Indels: 16
0.82 0.02 0.16
Matches are distributed among these distances:
17 37 0.44
18 33 0.39
19 14 0.17
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.38
Consensus pattern (18 bp):
AATCTTCATATGATATGC
Found at i:32700120 original size:35 final size:35
Alignment explanation
Indices: 32700074--32700180 Score: 178
Period size: 35 Copynumber: 3.0 Consensus size: 35
32700064 ATAATCTTCA
*
32700074 ATGATATGCAATCTTCGATATGATACAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
32700110 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
32700145 ATGATTGCAATCTTAGATATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTAGA
32700181 AGATATGATT
Statistics
Matches: 68, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
35 50 0.74
36 5 0.07
37 13 0.19
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.36
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:32700122 original size:18 final size:18
Alignment explanation
Indices: 32700082--32700180 Score: 148
Period size: 18 Copynumber: 5.6 Consensus size: 18
32700072 CAATGATATG
*
32700082 CAATCTTCGATATGA-TA
1 CAATCTTAGATATGATTA
*
32700099 CAATCTTAGATATGATTG
1 CAATCTTAGATATGATTA
32700117 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
*
32700134 CAATCTTAGATATGATTG
1 CAATCTTAGATATGATTA
32700152 CAATCTTAGATATGATATA
1 CAATCTTAGATATGAT-TA
32700171 CAATCTTAGA
1 CAATCTTAGA
32700181 AGATATGATT
Statistics
Matches: 74, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
17 30 0.41
18 33 0.45
19 11 0.15
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.36
Consensus pattern (18 bp):
CAATCTTAGATATGATTA
Found at i:32705888 original size:14 final size:14
Alignment explanation
Indices: 32705881--32705921 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
32705871 AAAAAAAGAG
32705881 AAAAAAA-AG-AAA
1 AAAAAAAGAGAAAA
*
32705893 AGAAAAAGAGAAAA
1 AAAAAAAGAGAAAA
32705907 AAAAAAAGAGAAAA
1 AAAAAAAGAGAAAA
32705921 A
1 A
32705922 GGAAAAAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 6 0.24
13 2 0.08
14 17 0.68
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (14 bp):
AAAAAAAGAGAAAA
Found at i:32705901 original size:22 final size:21
Alignment explanation
Indices: 32705869--32705929 Score: 90
Period size: 22 Copynumber: 2.9 Consensus size: 21
32705859 CTTCTATTTC
32705869 AAAA-AAAAAGAGAAAAAAAA
1 AAAAGAAAAAGAGAAAAAAAA
32705889 GAAAAGAAAAAGAGAAAAAAAA
1 -AAAAGAAAAAGAGAAAAAAAA
32705911 AAAGAGAAAAAG-GAAAAAA
1 AAA-AGAAAAAGAGAAAAAA
32705930 TGGAGAGGCC
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
21 14 0.37
22 24 0.63
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (21 bp):
AAAAGAAAAAGAGAAAAAAAA
Found at i:32705921 original size:11 final size:11
Alignment explanation
Indices: 32705870--32705910 Score: 66
Period size: 11 Copynumber: 3.7 Consensus size: 11
32705860 TTCTATTTCA
32705870 AAAAAAAAGAG
1 AAAAAAAAGAG
32705881 AAAAAAAAGA-
1 AAAAAAAAGAG
32705891 AAAGAAAAAGAG
1 AAA-AAAAAGAG
32705903 AAAAAAAA
1 AAAAAAAA
32705911 AAAGAGAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
10 3 0.11
11 22 0.79
12 3 0.11
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (11 bp):
AAAAAAAAGAG
Found at i:32705927 original size:14 final size:14
Alignment explanation
Indices: 32705890--32705928 Score: 60
Period size: 14 Copynumber: 2.7 Consensus size: 14
32705880 GAAAAAAAAG
32705890 AAAAGAAAAAGAGA
1 AAAAGAAAAAGAGA
*
32705904 AAAAAAAAAAGAGA
1 AAAAGAAAAAGAGA
32705918 AAAAGGAAAAA
1 AAAA-GAAAAA
32705929 ATGGAGAGGC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 17 0.77
15 5 0.23
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (14 bp):
AAAAGAAAAAGAGA
Found at i:32706951 original size:44 final size:44
Alignment explanation
Indices: 32706807--32706986 Score: 170
Period size: 44 Copynumber: 4.1 Consensus size: 44
32706797 CAAAGAAACA
** *
32706807 AGATTTGGCATCCCCATGTTTATAGGGAACAGATCGAAGATAGT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * * * * * **
32706851 AGATCTGACATTCATGTGCTCTCT-GTGAAGCAGATTGAAGATTTC
1 AGATTTGGCATCCCTGTG-TTTATAGGGAA-CAGATCGAAGATAGC
*
32706896 AGCA--TGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
32706939 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
32706983 AGAT
1 AGAT
32706987 CTAACCTTCA
Statistics
Matches: 106, Mismatches: 22, Indels: 16
0.74 0.15 0.11
Matches are distributed among these distances:
42 2 0.02
43 16 0.15
44 70 0.66
45 17 0.16
46 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (44 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
Found at i:32707194 original size:119 final size:119
Alignment explanation
Indices: 32706978--32707320 Score: 641
Period size: 119 Copynumber: 2.9 Consensus size: 119
32706968 CAGATCGAAG
*
32706978 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
* * * *
32707043 TTACAAGGAACAAATCGAGGACATAGCGGATTTGACTCTTAGACGTTCTCAAAT
66 TTACAAGAAACAAATCGAGGACATAGCAGATTTGAATCTCAGACGTTCTCAAAT
32707097 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
32707162 TTACAAGAAACAAATCGAGGACATAGCAGATTTGAATCTCAGACGTTCTCAAAT
66 TTACAAGAAACAAATCGAGGACATAGCAGATTTGAATCTCAGACGTTCTCAAAT
32707216 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
32707281 TTACAAGAAACAAATCGAGGACATAGCAGATTTGAATCTC
66 TTACAAGAAACAAATCGAGGACATAGCAGATTTGAATCTC
32707321 CTCTCAAATG
Statistics
Matches: 219, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
119 219 1.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (119 bp):
ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
TTACAAGAAACAAATCGAGGACATAGCAGATTTGAATCTCAGACGTTCTCAAAT
Found at i:32707443 original size:83 final size:83
Alignment explanation
Indices: 32707257--32707863 Score: 1016
Period size: 83 Copynumber: 7.2 Consensus size: 83
32707247 GAAGCAGATC
* * * * * * *
32707257 CAAGATGATTTGGTATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGCAGATTTGAATCTCC
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATG-A----C
32707322 TCTCAAATGTTCTCAAACAGACT
61 TCTCAAATGTTCTCAAACAGACT
32707345 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
32707410 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
32707428 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
32707493 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
32707511 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
32707576 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
32707594 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
32707659 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* *
32707677 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGACATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
*
32707742 AATGTTCTCAAATAGACT
66 AATGTTCTCAAACAGACT
* * * *
32707760 CAAGATGGTTTAGGCATCCTTATGCTTACAAGGAACAAGTCGAGGACCTTGCAGATATGATTCTC
1 CAAGATGGTTT-GGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTC
32707825 AAATGTTCTCAAACAGACT
65 AAATGTTCTCAAACAGACT
* *
32707844 CAAGATGATTTGACATCCTT
1 CAAGATGGTTTGGCATCCTT
32707864 ACAAATCGAA
Statistics
Matches: 501, Mismatches: 17, Indels: 7
0.95 0.03 0.01
Matches are distributed among these distances:
83 372 0.74
84 77 0.15
87 1 0.00
88 51 0.10
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:32709041 original size:4 final size:4
Alignment explanation
Indices: 32709032--32709060 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
32709022 AGAAGCACCG
32709032 AATT AATT AATT AATT AATT AATT AATT A
1 AATT AATT AATT AATT AATT AATT AATT A
32709061 TGACATCTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
AATT
Found at i:32709306 original size:20 final size:20
Alignment explanation
Indices: 32709281--32709323 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
32709271 ATCAGTATTC
32709281 TTATCCTAAATTTTAGGATT
1 TTATCCTAAATTTTAGGATT
* *
32709301 TTATCCTGAATTTTAGTATT
1 TTATCCTAAATTTTAGGATT
32709321 TTA
1 TTA
32709324 ATTTGGATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.28, C:0.09, G:0.09, T:0.53
Consensus pattern (20 bp):
TTATCCTAAATTTTAGGATT
Found at i:32710238 original size:20 final size:20
Alignment explanation
Indices: 32710206--32710293 Score: 70
Period size: 20 Copynumber: 4.5 Consensus size: 20
32710196 CGAAACTAAA
*
32710206 ATTTTTAA-TTGATACCAAT
1 ATTTTTAACGTGATACCAAT
* * *
32710225 TTTTTTAACGTGATGCTAAT
1 ATTTTTAACGTGATACCAAT
* * * *
32710245 ATTTGTAACCTAATACCAAA
1 ATTTTTAACGTGATACCAAT
* *
32710265 ATTTTTAAAGTGATTCCAAT
1 ATTTTTAACGTGATACCAAT
*
32710285 ATTTCTAAC
1 ATTTTTAAC
32710294 AACATCTTAT
Statistics
Matches: 49, Mismatches: 19, Indels: 1
0.71 0.28 0.01
Matches are distributed among these distances:
19 7 0.14
20 42 0.86
ACGTcount: A:0.35, C:0.14, G:0.08, T:0.43
Consensus pattern (20 bp):
ATTTTTAACGTGATACCAAT
Found at i:32710263 original size:40 final size:40
Alignment explanation
Indices: 32710217--32710293 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
32710207 TTTTTAATTG
** * * *
32710217 ATACCAATTTTTTTAACGTGATGCTAATATTTGTAACCTA
1 ATACCAAAATTTTTAAAGTGATGCCAATATTTCTAACCTA
*
32710257 ATACCAAAATTTTTAAAGTGATTCCAATATTTCTAAC
1 ATACCAAAATTTTTAAAGTGATGCCAATATTTCTAAC
32710294 AACATCTTAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (40 bp):
ATACCAAAATTTTTAAAGTGATGCCAATATTTCTAACCTA
Found at i:32710343 original size:21 final size:21
Alignment explanation
Indices: 32710317--32710380 Score: 71
Period size: 20 Copynumber: 3.2 Consensus size: 21
32710307 TTATTTTGAT
32710317 ATACCAAAAAATTCTAACCAA
1 ATACCAAAAAATTCTAACCAA
*
32710338 ATACC-AAAATTTCTAA-CAA
1 ATACCAAAAAATTCTAACCAA
* * *
32710357 ATATCAAAATATT-TAACAAA
1 ATACCAAAAAATTCTAACCAA
32710377 ATAC
1 ATAC
32710381 TCTTAAAAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
19 10 0.29
20 20 0.57
21 5 0.14
ACGTcount: A:0.56, C:0.19, G:0.00, T:0.25
Consensus pattern (21 bp):
ATACCAAAAAATTCTAACCAA
Found at i:32710348 original size:19 final size:19
Alignment explanation
Indices: 32710324--32710380 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 19
32710314 GATATACCAA
32710324 AAAATTCTAACCAAATACC
1 AAAATTCTAACCAAATACC
*
32710343 AAAATTTCTAA-CAAATATC
1 AAAA-TTCTAACCAAATACC
* *
32710362 AAAATATTTAACAAAATAC
1 AAAAT-TCTAACCAAATAC
32710381 TCTTAAAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
18 1 0.03
19 19 0.61
20 11 0.35
ACGTcount: A:0.56, C:0.18, G:0.00, T:0.26
Consensus pattern (19 bp):
AAAATTCTAACCAAATACC
Found at i:32719029 original size:15 final size:15
Alignment explanation
Indices: 32719009--32719038 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
32718999 GTGGAGATTG
32719009 TTAGAATTAAGTGAC
1 TTAGAATTAAGTGAC
32719024 TTAGAATTAAGTGAC
1 TTAGAATTAAGTGAC
32719039 CCAAGTTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.20, T:0.33
Consensus pattern (15 bp):
TTAGAATTAAGTGAC
Found at i:32720877 original size:17 final size:18
Alignment explanation
Indices: 32720855--32720888 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
32720845 TTTCGGCAGA
*
32720855 GTGGG-CCATACAGGCAT
1 GTGGGCCCACACAGGCAT
32720872 GTGGGCCCACACAGGCA
1 GTGGGCCCACACAGGCA
32720889 GATCACTTGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.24, C:0.29, G:0.35, T:0.12
Consensus pattern (18 bp):
GTGGGCCCACACAGGCAT
Found at i:32723846 original size:5 final size:5
Alignment explanation
Indices: 32723836--32723873 Score: 58
Period size: 5 Copynumber: 7.4 Consensus size: 5
32723826 AATTTGTGTG
*
32723836 TTATT TTATT TTTTCT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTAT-T TTATT TTATT TTATT TTATT TT
32723874 TTTCACAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 26 0.87
6 4 0.13
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.82
Consensus pattern (5 bp):
TTATT
Found at i:32730594 original size:5 final size:5
Alignment explanation
Indices: 32730584--32730616 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
32730574 GGAAGCTGTG
32730584 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA- AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
32730617 GAACACACAG
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.14
5 24 0.86
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (5 bp):
AAAAT
Found at i:32741351 original size:7 final size:7
Alignment explanation
Indices: 32741325--32741367 Score: 50
Period size: 7 Copynumber: 6.1 Consensus size: 7
32741315 AAAAAAATCA
*
32741325 AGAATCG
1 AGAATTG
32741332 AGAATTG
1 AGAATTG
32741339 AGAATTG
1 AGAATTG
*
32741346 AGAATTA
1 AGAATTG
*
32741353 AGGATTG
1 AGAATTG
*
32741360 AAAATTG
1 AGAATTG
32741367 A
1 A
32741368 AGATTGAAGA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.47, C:0.02, G:0.26, T:0.26
Consensus pattern (7 bp):
AGAATTG
Found at i:32741368 original size:7 final size:7
Alignment explanation
Indices: 32741355--32741478 Score: 112
Period size: 7 Copynumber: 17.9 Consensus size: 7
32741345 GAGAATTAAG
32741355 GATTGAA
1 GATTGAA
*
32741362 AATTGAA
1 GATTGAA
32741369 GATTGAA
1 GATTGAA
32741376 GATTGAA
1 GATTGAA
32741383 GATTGAA
1 GATTGAA
32741390 GATTGAA
1 GATTGAA
*
32741397 AATTGAA
1 GATTGAA
*
32741404 TATT-ATA
1 GATTGA-A
*
32741411 GATTGAG
1 GATTGAA
32741418 GATTGAA
1 GATTGAA
* *
32741425 AATTGAG
1 GATTGAA
* *
32741432 GACTGAG
1 GATTGAA
32741439 GATT-AA
1 GATTGAA
32741445 GAATTGAA
1 G-ATTGAA
32741453 G-TTGAA
1 GATTGAA
32741459 GATT-AA
1 GATTGAA
32741465 GGATTGAA
1 -GATTGAA
*
32741473 AATTGA
1 GATTGA
32741479 GTTGAAAAGA
Statistics
Matches: 96, Mismatches: 14, Indels: 14
0.77 0.11 0.11
Matches are distributed among these distances:
6 11 0.11
7 79 0.82
8 6 0.06
ACGTcount: A:0.44, C:0.01, G:0.26, T:0.30
Consensus pattern (7 bp):
GATTGAA
Found at i:32741372 original size:14 final size:14
Alignment explanation
Indices: 32741342--32741486 Score: 88
Period size: 14 Copynumber: 10.6 Consensus size: 14
32741332 AGAATTGAGA
*
32741342 ATTGAGAATT-AAGG
1 ATTGAAAATTGAA-G
32741356 ATTGAAAATTGAAG
1 ATTGAAAATTGAAG
*
32741370 ATTGAAGATTGAAG
1 ATTGAAAATTGAAG
* *
32741384 ATTGAAGATTGAAA
1 ATTGAAAATTGAAG
*
32741398 ATTGAATATT-ATAG
1 ATTGAAAATTGA-AG
** *
32741412 ATTGAGGATTGAAA
1 ATTGAAAATTGAAG
** * *
32741426 ATTGAGGACTGAGG
1 ATTGAAAATTGAAG
32741440 ATT-AAGAATTGAAG
1 ATTGAA-AATTGAAG
*
32741454 -TTGAAGATT-AAGG
1 ATTGAAAATTGAA-G
32741467 ATTGAAAATTG-AG
1 ATTGAAAATTGAAG
32741480 -TTGAAAA
1 ATTGAAAA
32741487 GAATAAAGTT
Statistics
Matches: 106, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
12 9 0.08
13 9 0.08
14 85 0.80
15 3 0.03
ACGTcount: A:0.44, C:0.01, G:0.26, T:0.30
Consensus pattern (14 bp):
ATTGAAAATTGAAG
Found at i:32755087 original size:94 final size:94
Alignment explanation
Indices: 32754920--32755111 Score: 316
Period size: 94 Copynumber: 2.1 Consensus size: 94
32754910 GAACAAATCG
*
32754920 AAGA-AACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATAAGAGACATAGCAGATCTGACC
1 AAGATAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATAAGAGACATAGCAGATCTAACC
32754984 TTCAAATGTTTTCACATCGAAGCAGATCC
66 TTCAAATGTTTTCACATCGAAGCAGATCC
*
32755013 AAGATAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT-CGAAGACATAGCAGATCTAAC
1 AAGATAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATAAG-AGACATAGCAGATCTAAC
** *
32755077 CTTCGGATGTTTTCACATCGAAGTAGATCC
65 CTTCAAATGTTTTCACATCGAAGCAGATCC
32755107 AAGAT
1 AAGAT
32755112 GATTTGGCAT
Statistics
Matches: 92, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
93 5 0.05
94 87 0.95
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (94 bp):
AAGATAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATAAGAGACATAGCAGATCTAACC
TTCAAATGTTTTCACATCGAAGCAGATCC
Found at i:32755177 original size:89 final size:91
Alignment explanation
Indices: 32754928--32755209 Score: 255
Period size: 94 Copynumber: 3.1 Consensus size: 91
32754918 CGAAGAAACA
* * *
32754928 GATTTGGCAT-CTCCATATTCGACGGAGAGCAGAT-AAGAGACATAGCAGA-TCTGACCTTCAAA
1 GATTTGGCATCCTCCATATTCGACAGAGAGCAGATCAA-AGACATAGCAGATTTTG-CCTTCAAG
32754990 TGTTTTCACATCGAAGCAGATCCAAGAT
64 TGTTTTCACATCGAAGCAGATCCAAGAT
* * * **
32755018 AACAGATTTGGCAT-CTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTC-
1 ----GATTTGGCATCCTCCATATTCGACAGAGAGCAGATCAAAGACATAGCAGATTTTGCCTTCA
* *
32755081 GGATGTTTTCACATCGAAGTAGATCCAAGAT
62 AG-TGTTTTCACATCGAAGCAGATCCAAGAT
* * *
32755112 GATTTGGCATCCTTGCAT-TT--ACA-AGGAGCAGATCAAAGACATAGCAGATTTTGCTTTCACG
1 GATTTGGCATCC-TCCATATTCGACAGA-GAGCAGATCAAAGACATAGCAGATTTTGCCTTCAAG
* *
32755173 TGTTTAT-GC-T-GAAGCAGATCTAAGAT
64 TGTTT-TCACATCGAAGCAGATCCAAGAT
32755199 GATTTGGCATC
1 GATTTGGCATC
32755210 TCTGTATTGT
Statistics
Matches: 161, Mismatches: 19, Indels: 23
0.79 0.09 0.11
Matches are distributed among these distances:
87 25 0.16
88 2 0.01
89 36 0.22
90 12 0.07
91 3 0.02
92 4 0.02
94 78 0.48
95 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.27
Consensus pattern (91 bp):
GATTTGGCATCCTCCATATTCGACAGAGAGCAGATCAAAGACATAGCAGATTTTGCCTTCAAGTG
TTTTCACATCGAAGCAGATCCAAGAT
Found at i:32755268 original size:220 final size:220
Alignment explanation
Indices: 32755013--32755499 Score: 778
Period size: 220 Copynumber: 2.2 Consensus size: 220
32755003 AAGCAGATCC
32755013 AAGATAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACC
1 AAGA-AACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACC
* *
32755078 TTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCATTTACAAGGAGCAG
65 TTCGGATGTTTTCACATCAAAGCAGATCCAAGATGATTTGGCATCCTTGCATTTACAAGGAGCAG
* *
32755143 ATCAAAGACATAGCAGATTTTGCTTTCACGTGTTTATGCTGAAGC-AGATCTAAGATGATTTGGC
130 ATCAAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCGA-ATCTAAGATGATTTGGC
**
32755207 ATCTCTGTATTGTCAGAGAACAAATTG
194 ATCTCTGTATTGTCAGAGAACAAAGCG
*
32755234 AAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATTTAACCT
1 AAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCT
** *
32755299 TCGGATGTTTTTGCATCAAAGCAGATCCAAGATGATTTGGCATCCTTGCGTTTACAAGGAGCAGA
66 TCGGATGTTTTCACATCAAAGCAGATCCAAGATGATTTGGCATCCTTGCATTTACAAGGAGCAGA
* *
32755364 TCGAAGACATAGTAGATTTGGCTTTCACGTGTTTACGCTGAAGCGAATCTAAGATGATTTGGCAT
131 TCAAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCGAATCTAAGATGATTTGGCAT
*
32755429 CTCTGTATTGTCAGGGAACAAAGCG
196 CTCTGTATTGTCAGAGAACAAAGCG
* * * ** *
32755454 AAGAAGCAAATTTGGCGTCTCTGTGTTCGACGGAGAGCAGATCGAA
1 AAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAA
32755500 ATATCAGCAT
Statistics
Matches: 246, Mismatches: 19, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
220 241 0.98
221 5 0.02
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (220 bp):
AAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCT
TCGGATGTTTTCACATCAAAGCAGATCCAAGATGATTTGGCATCCTTGCATTTACAAGGAGCAGA
TCAAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCGAATCTAAGATGATTTGGCAT
CTCTGTATTGTCAGAGAACAAAGCG
Found at i:32757402 original size:15 final size:15
Alignment explanation
Indices: 32757382--32757414 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
32757372 CCTCTTACAC
32757382 TTTTAAAT-TTATTTA
1 TTTTAAATATTA-TTA
32757397 TTTTAAATATTATTA
1 TTTTAAATATTATTA
32757412 TTT
1 TTT
32757415 ATTTACTGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 14 0.82
16 3 0.18
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
TTTTAAATATTATTA
Found at i:32757444 original size:18 final size:21
Alignment explanation
Indices: 32757403--32757447 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
32757393 TTTATTTTAA
*
32757403 ATATTATTATTTATTTACTGT
1 ATATTATTATTTATATACTGT
32757424 ATATTATTATTT-TATA-T-T
1 ATATTATTATTTATATACTGT
32757442 ATATTA
1 ATATTA
32757448 ATACTCATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 7 0.30
19 1 0.04
20 3 0.13
21 12 0.52
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (21 bp):
ATATTATTATTTATATACTGT
Found at i:32758489 original size:26 final size:26
Alignment explanation
Indices: 32758460--32758512 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
32758450 TCAAACATGC
32758460 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
32758486 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
32758512 A
1 A
32758513 AAACTATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:32760023 original size:26 final size:26
Alignment explanation
Indices: 32759985--32760042 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
32759975 CATGAAATTC
32759985 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
32760011 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
32760037 TTATCA
1 TTATCA
32760043 ATTTGTACCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:32770247 original size:18 final size:18
Alignment explanation
Indices: 32770226--32770265 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
32770216 CCACGAATAG
32770226 CAGTCTTACTACAGTTTT
1 CAGTCTTACTACAGTTTT
* * *
32770244 CAGTTTTGCTACTGTTTT
1 CAGTCTTACTACAGTTTT
32770262 CAGT
1 CAGT
32770266 ATACACTATC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.17, C:0.20, G:0.15, T:0.47
Consensus pattern (18 bp):
CAGTCTTACTACAGTTTT
Found at i:32773805 original size:19 final size:20
Alignment explanation
Indices: 32773771--32773808 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
32773761 ATTTTTTTTC
32773771 TTTTTCATTTTCAAAAAATA
1 TTTTTCATTTTCAAAAAATA
*
32773791 TTTTTTATTTT-AAAAAAT
1 TTTTTCATTTTCAAAAAAT
32773809 GAAAACATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.55
Consensus pattern (20 bp):
TTTTTCATTTTCAAAAAATA
Found at i:32774381 original size:19 final size:20
Alignment explanation
Indices: 32774337--32774383 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 20
32774327 CAAAACTTAC
32774337 AAAAAAATTAAAATAAATTT
1 AAAAAAATTAAAATAAATTT
** *
32774357 -TTAAAATTAAAA-ATATTT
1 AAAAAAATTAAAATAAATTT
32774375 AAAAAAATT
1 AAAAAAATT
32774384 CTAAAATTTA
Statistics
Matches: 21, Mismatches: 5, Indels: 3
0.72 0.17 0.10
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (20 bp):
AAAAAAATTAAAATAAATTT
Found at i:32774445 original size:22 final size:20
Alignment explanation
Indices: 32774397--32774446 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 20
32774387 AAATTTATAT
32774397 TTTTAAAAAATAATAAAAAA
1 TTTTAAAAAATAATAAAAAA
* *
32774417 TTCTAAAGAATATATAAATAAA
1 TTTTAAAAAATA-ATAAA-AAA
32774439 TTTTAAAA
1 TTTTAAAA
32774447 TTTTCTAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
20 10 0.42
21 5 0.21
22 9 0.38
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (20 bp):
TTTTAAAAAATAATAAAAAA
Found at i:32777945 original size:25 final size:26
Alignment explanation
Indices: 32777885--32777933 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
32777875 ATTTGTTTTA
*
32777885 ATATTTG-TTT-TAATATTTTTAAAT
1 ATATTTGATTTATTATATTTTTAAAT
32777909 ATATTTGATTTATTATATTTTTAAA
1 ATATTTGATTTATTATATTTTTAAA
32777934 ATTTTTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (26 bp):
ATATTTGATTTATTATATTTTTAAAT
Found at i:32779746 original size:118 final size:118
Alignment explanation
Indices: 32779538--32779894 Score: 707
Period size: 118 Copynumber: 3.0 Consensus size: 118
32779528 TTTAAAGATA
32779538 AAATGTGAAATTGATACTAATAGAAAATTTTAACATGAATATTTTATGACACTATCAATAATTCA
1 AAATGTGAAATTGATACTAATAGAAAATTTTAACATGAATATTTTATGACACTATCAATAATTCA
32779603 ATTTTAACATAAATTGATAAAGATTCAGGATGATTAAACAATTCAATAATATC
66 ATTTTAACATAAATTGATAAAGATTCAGGATGATTAAACAATTCAATAATATC
32779656 AAATGTGAAATTGATACTAATAGAAAATTTTAACATGAATATTTTATGACACTATCAATAATTCA
1 AAATGTGAAATTGATACTAATAGAAAATTTTAACATGAATATTTTATGACACTATCAATAATTCA
32779721 ATTTTAACATAAATTGATAAAGATTCAGGATGATTAAACAATTCAATAATATC
66 ATTTTAACATAAATTGATAAAGATTCAGGATGATTAAACAATTCAATAATATC
32779774 AAATGTGAAATTGATACTAATAGAAAATTTTAACATGAATATTTTATGACACTATCAATAATTCA
1 AAATGTGAAATTGATACTAATAGAAAATTTTAACATGAATATTTTATGACACTATCAATAATTCA
32779839 ATTTTAACATAAATTGATAAAGATTCAGGATGATTAAACAATTCAATAATAT-
66 ATTTTAACATAAATTGATAAAGATTCAGGATGATTAAACAATTCAATAATATC
32779891 AAAT
1 AAAT
32779895 AGTATAAAAT
Statistics
Matches: 239, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
117 4 0.02
118 235 0.98
ACGTcount: A:0.47, C:0.09, G:0.09, T:0.35
Consensus pattern (118 bp):
AAATGTGAAATTGATACTAATAGAAAATTTTAACATGAATATTTTATGACACTATCAATAATTCA
ATTTTAACATAAATTGATAAAGATTCAGGATGATTAAACAATTCAATAATATC
Found at i:32780014 original size:50 final size:50
Alignment explanation
Indices: 32779948--32780053 Score: 121
Period size: 49 Copynumber: 2.1 Consensus size: 50
32779938 ATAAATTCGA
32779948 AAAAAAATTTGGGGTTTGAAAGGAAA-TAAA-AGTTTT-GAGAGAAAGCAAAAGG
1 AAAAAAA-TTGGGGTTTG---GGAAAGTAAACA-TTTTGGAGAGAAAGCAAAAGG
* *
32780000 AAAAAAA-TGGGGTTTGGGAAAGTAAACATTTTGGGGAGAAAGTAAAAGG
1 AAAAAAATTGGGGTTTGGGAAAGTAAACATTTTGGAGAGAAAGCAAAAGG
32780049 AAAAA
1 AAAAA
32780054 GTTTTTAAGG
Statistics
Matches: 49, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
47 5 0.10
48 8 0.16
49 20 0.41
50 9 0.18
52 7 0.14
ACGTcount: A:0.50, C:0.02, G:0.28, T:0.20
Consensus pattern (50 bp):
AAAAAAATTGGGGTTTGGGAAAGTAAACATTTTGGAGAGAAAGCAAAAGG
Found at i:32786697 original size:28 final size:28
Alignment explanation
Indices: 32786665--32786721 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
32786655 ATACTCCTCC
32786665 CCAAGAGTTTTAGCACCATCGTAGTGGA
1 CCAAGAGTTTTAGCACCATCGTAGTGGA
*
32786693 CCAAGAGTTTTATCACCATCGTAGTGGA
1 CCAAGAGTTTTAGCACCATCGTAGTGGA
32786721 C
1 C
32786722 ATATCCTTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (28 bp):
CCAAGAGTTTTAGCACCATCGTAGTGGA
Found at i:32787812 original size:8 final size:8
Alignment explanation
Indices: 32787734--32787814 Score: 54
Period size: 8 Copynumber: 9.2 Consensus size: 8
32787724 ATCAGTAACT
32787734 AATTAAAA
1 AATTAAAA
*
32787742 TATTATAAA
1 AATTA-AAA
*
32787751 AAGTAAAA
1 AATTAAAA
* *
32787759 AAATATAA
1 AATTAAAA
32787767 AATTATAAA
1 AATTA-AAA
32787776 AATTCAAAA
1 AATT-AAAA
32787785 ATATTAAAA
1 A-ATTAAAA
*
32787794 ATTGTAAAAAA
1 AAT-T--AAAA
32787805 AATTAAAA
1 AATTAAAA
32787813 AA
1 AA
32787815 CTTGAATACA
Statistics
Matches: 57, Mismatches: 9, Indels: 14
0.71 0.11 0.17
Matches are distributed among these distances:
8 24 0.42
9 22 0.39
10 5 0.09
11 6 0.11
ACGTcount: A:0.69, C:0.01, G:0.02, T:0.27
Consensus pattern (8 bp):
AATTAAAA
Found at i:32788401 original size:95 final size:94
Alignment explanation
Indices: 32788227--32788416 Score: 256
Period size: 95 Copynumber: 2.0 Consensus size: 94
32788217 TCGACTAGCT
* * *
32788227 TTGTTGAAAAACACAAATGGGATGAAATTTTGTGGTTTATGATTCATGGATGGGACCCAAAAATA
1 TTGTTGAAAAACACAAATGGGATCAAATTTTGTGGTTTATGATTCATGAATGGAACCCAAAAATA
*
32788292 TAGGATACATTAAGCACTAAGCAGCTATA
66 TAGGATACAGTAAGCACTAAGCAGCTATA
** * *
32788321 TTGTTGAAAAACACAAATGGGATCAAACTTTTGTGGTTTATGATTGGTGAATGGAACTCAAAAGT
1 TTGTTGAAAAACACAAATGGGATCAAA-TTTTGTGGTTTATGATTCATGAATGGAACCCAAAAAT
* * *
32788386 ATATTG-TGCAGTAAGCACTAAGCAGTTATA
65 ATA-GGATACAGTAAGCACTAAGCAGCTATA
32788416 T
1 T
32788417 ATGTAGCCCT
Statistics
Matches: 83, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
94 26 0.31
95 56 0.67
96 1 0.01
ACGTcount: A:0.37, C:0.11, G:0.22, T:0.31
Consensus pattern (94 bp):
TTGTTGAAAAACACAAATGGGATCAAATTTTGTGGTTTATGATTCATGAATGGAACCCAAAAATA
TAGGATACAGTAAGCACTAAGCAGCTATA
Found at i:32791240 original size:146 final size:146
Alignment explanation
Indices: 32790976--32791274 Score: 508
Period size: 146 Copynumber: 2.0 Consensus size: 146
32790966 CAAGATACAA
* *
32790976 TATATATTAATATGCTCATTCATTCATCTTTTTACTATTTAGTGAATTCTTAAATGTTATTGTTT
1 TATATATTAATATGCTCATTCATTCATCTTTTTACTATTTAGTGAATTCTTAAATATTATTGTTC
* *
32791041 ACATAACTATGAGACCTTCGACTATCCATCCTTAGTAAAATATCACTAACACAACTCAATATGAG
66 ACATAACTATGAGACCTTCAACTATCCATCCTTAGTAAAATATCACTAACACAACTCAATAGGAG
* * *
32791106 AGTGCACAAAAGTAAT
131 ACTGCACAAAAATAAG
32791122 TATATATTAATATGCTCATTCATTCATCTTTTTACTATTTAGTGAATTCTTAAATATTATTGTTC
1 TATATATTAATATGCTCATTCATTCATCTTTTTACTATTTAGTGAATTCTTAAATATTATTGTTC
* * *
32791187 ACATAACTATGAGACTTTCAACTATCCATCCTTAGTAAAATATCACTGACACAACTCATTAGGAG
66 ACATAACTATGAGACCTTCAACTATCCATCCTTAGTAAAATATCACTAACACAACTCAATAGGAG
32791252 ACTGCACAAAAATAAG
131 ACTGCACAAAAATAAG
32791268 TATATAT
1 TATATAT
32791275 CAAATATAAT
Statistics
Matches: 143, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
146 143 1.00
ACGTcount: A:0.36, C:0.17, G:0.09, T:0.38
Consensus pattern (146 bp):
TATATATTAATATGCTCATTCATTCATCTTTTTACTATTTAGTGAATTCTTAAATATTATTGTTC
ACATAACTATGAGACCTTCAACTATCCATCCTTAGTAAAATATCACTAACACAACTCAATAGGAG
ACTGCACAAAAATAAG
Found at i:32792158 original size:6 final size:6
Alignment explanation
Indices: 32792104--32792138 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
32792094 TATGCACAAT
*
32792104 CAGATA CAGATA CAGATA CAGATA CAGAAA CAGAT
1 CAGATA CAGATA CAGATA CAGATA CAGATA CAGAT
32792139 TCAGTTTTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.51, C:0.17, G:0.17, T:0.14
Consensus pattern (6 bp):
CAGATA
Found at i:32792162 original size:12 final size:12
Alignment explanation
Indices: 32792103--32792162 Score: 57
Period size: 12 Copynumber: 5.0 Consensus size: 12
32792093 ATATGCACAA
32792103 TCAGATACAGAT
1 TCAGATACAGAT
*
32792115 ACAGATACAGAT
1 TCAGATACAGAT
* *
32792127 ACAGAAACAGAT
1 TCAGATACAGAT
* **
32792139 TCAGTTTTAGAT
1 TCAGATACAGAT
*
32792151 TCAGATTCAGAT
1 TCAGATACAGAT
32792163 ATGCAAAATC
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 39 1.00
ACGTcount: A:0.42, C:0.15, G:0.17, T:0.27
Consensus pattern (12 bp):
TCAGATACAGAT
Found at i:32794007 original size:20 final size:20
Alignment explanation
Indices: 32793982--32794022 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
32793972 TATATATTAG
32793982 AAGTTAAAAAATCTTATCTT
1 AAGTTAAAAAATCTTATCTT
32794002 AAGTTAAAAAATCTTATCTT
1 AAGTTAAAAAATCTTATCTT
32794022 A
1 A
32794023 CTTTCTTGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.46, C:0.10, G:0.05, T:0.39
Consensus pattern (20 bp):
AAGTTAAAAAATCTTATCTT
Found at i:32801427 original size:78 final size:78
Alignment explanation
Indices: 32801298--32801454 Score: 296
Period size: 78 Copynumber: 2.0 Consensus size: 78
32801288 TTGCGGTATG
**
32801298 GTAATACCAATATTGAGCAAAAAAAAAAAAAAAGAAGAAGATAAAATCTTGGTAGACAAATGAGG
1 GTAATACCAATATTGAAAAAAAAAAAAAAAAAAGAAGAAGATAAAATCTTGGTAGACAAATGAGG
32801363 CTATCATTAAGAA
66 CTATCATTAAGAA
32801376 GTAATACCAATATTGAAAAAAAAAAAAAAAAAAGAAGAAGATAAAATCTTGGTAGACAAATGAGG
1 GTAATACCAATATTGAAAAAAAAAAAAAAAAAAGAAGAAGATAAAATCTTGGTAGACAAATGAGG
32801441 CTATCATTAAGAA
66 CTATCATTAAGAA
32801454 G
1 G
32801455 GTTTGTATAT
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
78 77 1.00
ACGTcount: A:0.56, C:0.08, G:0.17, T:0.19
Consensus pattern (78 bp):
GTAATACCAATATTGAAAAAAAAAAAAAAAAAAGAAGAAGATAAAATCTTGGTAGACAAATGAGG
CTATCATTAAGAA
Found at i:32810397 original size:4 final size:4
Alignment explanation
Indices: 32810390--32810421 Score: 55
Period size: 4 Copynumber: 7.8 Consensus size: 4
32810380 GAAAAAGGAA
32810390 AAAT AAAT AAAT AAAT AAAT AAAT AAAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT -AAAT AAA
32810422 AATGTTTTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 23 0.85
5 4 0.15
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:32812047 original size:14 final size:15
Alignment explanation
Indices: 32812019--32812048 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
32812009 AAATAAAAAT
32812019 AAATAAAACATGACA
1 AAATAAAACATGACA
32812034 AAATAAAA-ATGACA
1 AAATAAAACATGACA
32812048 A
1 A
32812049 TGACAATGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.70, C:0.10, G:0.07, T:0.13
Consensus pattern (15 bp):
AAATAAAACATGACA
Found at i:32816201 original size:43 final size:43
Alignment explanation
Indices: 32816139--32816309 Score: 218
Period size: 43 Copynumber: 4.0 Consensus size: 43
32816129 TCTGAATTCA
* * ** *
32816139 TTCACCAGCATT-TCGCCTGCTAGGCTTGAAGCCCAATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
* * *
32816181 TTCACCGGCTTTATAGCCTGCTAGGCCCGAGGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
* *
32816224 CTCACCGGCATTATAGCTTGCTAGGCCCGAAGCCCGATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
* *
32816267 TTCATCGGCATTATAGCCTGCTAGGCCCGAAGCCTGTATATCA
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCG-ATATCA
32816310 CATTTCGATA
Statistics
Matches: 110, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
42 10 0.09
43 94 0.85
44 6 0.05
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.27
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
Found at i:32819811 original size:29 final size:29
Alignment explanation
Indices: 32819769--32819827 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
32819759 CTAGGTTAGT
32819769 CTGAGAATCGACTAAACCATGCTCTGATA
1 CTGAGAATCGACTAAACCATGCTCTGATA
*
32819798 CTGAGAATTGACTAAACCATGCTCTGATA
1 CTGAGAATCGACTAAACCATGCTCTGATA
32819827 C
1 C
32819828 CACTAAATGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (29 bp):
CTGAGAATCGACTAAACCATGCTCTGATA
Found at i:32822932 original size:39 final size:39
Alignment explanation
Indices: 32822876--32822989 Score: 183
Period size: 39 Copynumber: 2.9 Consensus size: 39
32822866 CAGTGATGTT
*
32822876 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
*
32822915 TATCCGGACTTAAGGTCCGCAAGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * *
32822954 TAACTGGACTTAAGGTCCGCAGGCTACGTGCTGGAA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAA
32822990 ATATGTCTGG
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 69 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:32825923 original size:43 final size:43
Alignment explanation
Indices: 32825873--32826016 Score: 216
Period size: 43 Copynumber: 3.3 Consensus size: 43
32825863 TGTTAGGCTT
*
32825873 GAAGCCCGATATCATTTCACCGGCTTTATAGCCTGCTAGGCCC
1 GAAGCCCGATATCATTTCACCGGCATTATAGCCTGCTAGGCCC
* * * *
32825916 GAGGCCCGATATTATCTCACCGGCATTATAGCTTGCTAGGCCC
1 GAAGCCCGATATCATTTCACCGGCATTATAGCCTGCTAGGCCC
*
32825959 GAAGCCCGATATCATTTCATCGGCATTATAGCCTGCTAGGCCC
1 GAAGCCCGATATCATTTCACCGGCATTATAGCCTGCTAGGCCC
*
32826002 GAAGCCTGTATATCA
1 GAAGCCCG-ATATCA
32826017 CATTTCGATA
Statistics
Matches: 89, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
43 83 0.93
44 6 0.07
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.26
Consensus pattern (43 bp):
GAAGCCCGATATCATTTCACCGGCATTATAGCCTGCTAGGCCC
Found at i:32829654 original size:19 final size:19
Alignment explanation
Indices: 32829629--32829723 Score: 146
Period size: 17 Copynumber: 5.3 Consensus size: 19
32829619 ATAATATTCA
32829629 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
32829648 GTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
32829667 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
32829684 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
32829702 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
32829719 ATGAT
1 ATGAT
32829724 TGATGTAATA
Statistics
Matches: 71, Mismatches: 2, Indels: 8
0.88 0.02 0.10
Matches are distributed among these distances:
17 32 0.45
18 16 0.23
19 23 0.32
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:32829699 original size:35 final size:35
Alignment explanation
Indices: 32829637--32829725 Score: 160
Period size: 35 Copynumber: 2.5 Consensus size: 35
32829627 CAATGATATG
*
32829637 CAATCTTAGATGTGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
32829673 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
32829708 CAATCTTAGATATGATTG
1 CAATCTTAGATATGATTG
32829726 ATGTAATAGC
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
35 37 0.71
36 15 0.29
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.37
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATA
Found at i:32829813 original size:49 final size:49
Alignment explanation
Indices: 32829734--32829832 Score: 153
Period size: 49 Copynumber: 2.0 Consensus size: 49
32829724 TGATGTAATA
* * **
32829734 GCCCCAAATTGGGTCTAGTTGGAATGGAGGTTTCGGGACCACAAAATCT
1 GCCCAAAATTGGGTCTAGTTGCAACAGAGGTTTCGGGACCACAAAATCT
*
32829783 GCCCAAAATTGGGTCTAGTTGCAACAGAGGTTTCGGGATCACAAAATCT
1 GCCCAAAATTGGGTCTAGTTGCAACAGAGGTTTCGGGACCACAAAATCT
32829832 G
1 G
32829833 AAATAAAAAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.24
Consensus pattern (49 bp):
GCCCAAAATTGGGTCTAGTTGCAACAGAGGTTTCGGGACCACAAAATCT
Found at i:32831435 original size:64 final size:64
Alignment explanation
Indices: 32831354--32831537 Score: 180
Period size: 67 Copynumber: 2.8 Consensus size: 64
32831344 AGACATTATG
* *
32831354 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
32831418 ATGTAGCTAGGTCGCATGCGTGGCT-CCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCGCATGGGT-GATACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
32831482 TAA
62 TAA
* * *
32831485 AT-T-GCCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAG-CTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGC
32831538 CGAACTCTAT
Statistics
Matches: 98, Mismatches: 14, Indels: 17
0.76 0.11 0.13
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 23 0.23
65 5 0.05
66 17 0.17
67 33 0.34
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:32838860 original size:1 final size:1
Alignment explanation
Indices: 32838854--32838952 Score: 54
Period size: 1 Copynumber: 99.0 Consensus size: 1
32838844 CTATTTCAAC
* * * ** * * * * **
32838854 AAAAAAAAAGAAAAAAAAAGAAGAAAAAAAGGAAAAAAAAGAAAAGAAAAAGAGAAAAAAAAGGA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * *
32838919 AAAAGAAAAAAGAGAAAAAAGAAAAAAAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
32838953 TGGAGAGGCC
Statistics
Matches: 70, Mismatches: 28, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
1 70 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (1 bp):
A
Found at i:32838890 original size:23 final size:24
Alignment explanation
Indices: 32838855--32838952 Score: 100
Period size: 23 Copynumber: 4.2 Consensus size: 24
32838845 TATTTCAACA
* *
32838855 AAAAAAAAG-AAAAAAA-AAGAAG
1 AAAAAAAGGAAAAAAAAGAAAAAG
32838877 AAAAAAAGGAAAAAAAAG-AAAAG
1 AAAAAAAGGAAAAAAAAGAAAAAG
*
32838900 AAAAAGA-GAAAAAAAAGGAAAAAG
1 AAAAAAAGGAAAAAAAA-GAAAAAG
32838924 -AAAAAAGAGAAAAAAGAA-AAAAAG
1 AAAAAAAG-GAAAAAA-AAGAAAAAG
32838948 AAAAA
1 AAAAA
32838953 TGGAGAGGCC
Statistics
Matches: 64, Mismatches: 4, Indels: 13
0.79 0.05 0.16
Matches are distributed among these distances:
22 17 0.27
23 23 0.36
24 11 0.17
25 11 0.17
26 2 0.03
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (24 bp):
AAAAAAAGGAAAAAAAAGAAAAAG
Found at i:32838893 original size:31 final size:31
Alignment explanation
Indices: 32838855--32838952 Score: 123
Period size: 32 Copynumber: 3.2 Consensus size: 31
32838845 TATTTCAACA
32838855 AAAAAAAAGAAAAAAAAAGAAGAAAAAAAGG
1 AAAAAAAAGAAAAAAAAAGAAGAAAAAAAGG
32838886 AAAAAAAAGAAAAGAAAAAG-AGAAAAAAAAGG
1 AAAAAAAAGAAAA-AAAAAGAAG-AAAAAAAGG
*
32838918 AAAAAGAAA-AAAGAGAAAA-AAGAAAAAAA-G
1 AAAAA-AAAGAAA-AAAAAAGAAGAAAAAAAGG
32838948 AAAAA
1 AAAAA
32838953 TGGAGAGGCC
Statistics
Matches: 61, Mismatches: 1, Indels: 11
0.84 0.01 0.15
Matches are distributed among these distances:
30 6 0.10
31 22 0.36
32 29 0.48
33 4 0.07
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (31 bp):
AAAAAAAAGAAAAAAAAAGAAGAAAAAAAGG
Found at i:32838904 original size:32 final size:32
Alignment explanation
Indices: 32838855--32838952 Score: 134
Period size: 31 Copynumber: 3.2 Consensus size: 32
32838845 TATTTCAACA
32838855 AAAAAAAAGAAAA-AAAAAGAAGAAAAAAAGG
1 AAAAAAAAGAAAAGAAAAAGAAGAAAAAAAGG
32838886 AAAAAAAAGAAAAGAAAAAG-AGAAAAAAAAGG
1 AAAAAAAAGAAAAGAAAAAGAAG-AAAAAAAGG
*
32838918 AAAAAGAA-AAAAGAGAAAA-AAGAAAAAAA-G
1 AAAAAAAAGAAAAGA-AAAAGAAGAAAAAAAGG
32838948 AAAAA
1 AAAAA
32838953 TGGAGAGGCC
Statistics
Matches: 62, Mismatches: 1, Indels: 9
0.86 0.01 0.12
Matches are distributed among these distances:
30 6 0.10
31 28 0.45
32 28 0.45
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (32 bp):
AAAAAAAAGAAAAGAAAAAGAAGAAAAAAAGG
Found at i:32840033 original size:79 final size:80
Alignment explanation
Indices: 32839922--32840081 Score: 241
Period size: 82 Copynumber: 2.0 Consensus size: 80
32839912 GGTTAAATTT
** * *
32839922 GCAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATC-GAAGACTCGCCTTAATCCCTTAAGCAG
1 GCAGATCTTATCTCCCTAAGTAGTAGCAGAGCAGATCAGAAGACTCGCCTTAACCCCCTAAGCAG
32839986 TAAGGTAACAGGTTC
66 TAAGGTAACAGGTTC
*
32840001 GCAGATCTTATCTCCCTAAGTAGTAGCAGAGCAGATCAATGATGACTCGCCTTAACCCCCTAAGC
1 GCAGATCTTATCTCCCTAAGTAGTAGCAGAGCAGATC-A-GAAGACTCGCCTTAACCCCCTAAGC
*
32840066 AGTAGGGTAACAGGTT
64 AGTAAGGTAACAGGTT
32840082 ATAGCATAGC
Statistics
Matches: 72, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
79 35 0.49
82 37 0.51
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (80 bp):
GCAGATCTTATCTCCCTAAGTAGTAGCAGAGCAGATCAGAAGACTCGCCTTAACCCCCTAAGCAG
TAAGGTAACAGGTTC
Found at i:32840077 original size:82 final size:79
Alignment explanation
Indices: 32839882--32840081 Score: 256
Period size: 79 Copynumber: 2.4 Consensus size: 79
32839872 CAAAATTCAG
* *
32839882 CGCCTTAATCCCCTAAGCTGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGTAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGG-----TTCGCAGATCTTATCTCCCTAAGTAGTA
**
32839947 GTGGAGCAGATCGAAGACT
61 GCAGAGCAGATCGAAGACT
* *
32839966 CGCCTTAATCCCTTAAGCAGTAAGGTAACAGGTTCGCAGATCTTATCTCCCTAAGTAGTAGCAGA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTCGCAGATCTTATCTCCCTAAGTAGTAGCAGA
*
32840031 GCAGATCAATGATGACT
66 GCAGATC---GAAGACT
*
32840048 CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGTT
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTT
32840082 ATAGCATAGC
Statistics
Matches: 103, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
79 37 0.36
82 37 0.36
84 29 0.28
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (79 bp):
CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTCGCAGATCTTATCTCCCTAAGTAGTAGCAGA
GCAGATCGAAGACT
Found at i:32840441 original size:207 final size:207
Alignment explanation
Indices: 32840086--32840462 Score: 673
Period size: 207 Copynumber: 1.8 Consensus size: 207
32840076 CAGGTTATAG
*
32840086 CATAGCAGATCTGGCCTTCAGATGTTTATATTGAAGCAAGATCCAAGATGGTTTGGCATCATTGT
1 CATAGCAGATCTGGCCTTCAGATGTTTATATTGAAGCAAGATCCAAGATGGTTTGGCATCAGTGT
*
32840151 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATC
66 GCTTACAAGGAACAAATCGAAGACATAGATGATTTGGCTTTCACGTGCTTACGATGAAGCAAATC
*
32840216 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGAC
131 TAAGATAATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGAC
32840281 GGAAGGCACACA
196 GGAAGGCACACA
* *
32840293 CATAGCAGATCTGGCCTTCAGATGTTTATATTGAAGTAAGATCCAAGATGGTTTGGCATCCGTGT
1 CATAGCAGATCTGGCCTTCAGATGTTTATATTGAAGCAAGATCCAAGATGGTTTGGCATCAGTGT
* * * *
32840358 TCTTACAAGGAACAAATCGAAGACATAGATGATTTGGCTTTCACGTGTTTACGTTGAAGCAATTC
66 GCTTACAAGGAACAAATCGAAGACATAGATGATTTGGCTTTCACGTGCTTACGATGAAGCAAATC
32840423 TAAGATAATTTGGCATCTCTGTATTGTCAGAGAACAAATC
131 TAAGATAATTTGGCATCTCTGTATTGTCAGAGAACAAATC
32840463 GAAGAAACAG
Statistics
Matches: 161, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
207 161 1.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.30
Consensus pattern (207 bp):
CATAGCAGATCTGGCCTTCAGATGTTTATATTGAAGCAAGATCCAAGATGGTTTGGCATCAGTGT
GCTTACAAGGAACAAATCGAAGACATAGATGATTTGGCTTTCACGTGCTTACGATGAAGCAAATC
TAAGATAATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGAC
GGAAGGCACACA
Found at i:32841392 original size:205 final size:205
Alignment explanation
Indices: 32840918--32841581 Score: 1071
Period size: 205 Copynumber: 3.2 Consensus size: 205
32840908 NNNNNNNNNN
*
32840918 ATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTG
1 ATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTG
*
32840983 TTTACGTTGAAGCAAGTCTAAGATGATTTGGCATATCTGTATTGTCAGAGAACAAATCGAAGTTT
66 TTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTT
* *
32841048 GGCGTCTCCATATTCGACGGAGGGCTGACACATAGCAGATCTAGCCTTCAGATGTTTATACTGAA
131 GGCGTCTCCATATTCGACGGAGGGC--AGACATAGCAGATCTGGCCTTCAGATGTTTATACTGAA
32841113 GCAAGATCCAAG
194 GCAAGATCCAAG
* *
32841125 ATGGTTTGGCATCCTTGTGCTTACAAGGAACAAGTCGAAGACATAACTGATTTGGCTTTCACGTG
1 ATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTG
*
32841190 TTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTT
66 TTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTT
* * * * * * *
32841255 GGCGTCTCTATATTCGATGAAGGACAGACATAGCAGATTTGGGCTTCAAATGTTTATACTGAAGC
131 GGCGTCTCCATATTCGACGGAGGGCAGACATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGC
32841320 AAGATCCAAG
196 AAGATCCAAG
32841330 ATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTG
1 ATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTG
* * *
32841395 TTTATGTTGAAGCAAGTCTAAGATGATTTGGCATCTTTGTATTGTTAGAGAACAAATCGAAGTTT
66 TTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTT
* *
32841460 GGCGTCTCCATATTCGACGGAGGGCAGACACATAGCATATCTGGCCTTCAGATGTTTATGCTGAA
131 GGCGTCTCCATATTCGACGGAGGGCAG--ACATAGCAGATCTGGCCTTCAGATGTTTATACTGAA
32841525 GC-AGATCCAAG
194 GCAAGATCCAAG
* * *
32841536 ATGATTTGGCATTCTTGTGTTTACAAGGAACAAATCG-AGAACATAG
1 ATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAG-ACATAG
32841582 AAGATTTGAC
Statistics
Matches: 422, Mismatches: 32, Indels: 7
0.92 0.07 0.02
Matches are distributed among these distances:
205 194 0.46
206 49 0.12
207 179 0.42
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (205 bp):
ATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTG
TTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTT
GGCGTCTCCATATTCGACGGAGGGCAGACATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGC
AAGATCCAAG
Found at i:32841455 original size:87 final size:88
Alignment explanation
Indices: 32841280--32841456 Score: 207
Period size: 87 Copynumber: 2.0 Consensus size: 88
32841270 GATGAAGGAC
*
32841280 AGACATAGCAGATTTGGGCTTCAAATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCT
1 AGACATAGCAGATTTGGGCTTCAAATGTTTATACTGAAGCAAGATCCAAGATGATTTGGCATCCT
*
32841345 TGTGCTTACAAGGAACAAATCGA
66 TGTGATTACAAGGAACAAATCGA
* ** ** * *
32841368 AGACATAGCTGATTT-GGCTTTCACGTGTTTATGTTGAAGCAAG-TCTAAGATGATTTGGCATCT
1 AGACATAGCAGATTTGGGC-TTCAAATGTTTATACTGAAGCAAGATCCAAGATGATTTGGCATCC
***
32841431 TTGT-ATTGTTAGAGAACAAATCGA
65 TTGTGATTACAAG-GAACAAATCGA
32841455 AG
1 AG
32841457 TTTGGCGTCT
Statistics
Matches: 75, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
86 4 0.05
87 37 0.49
88 34 0.45
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (88 bp):
AGACATAGCAGATTTGGGCTTCAAATGTTTATACTGAAGCAAGATCCAAGATGATTTGGCATCCT
TGTGATTACAAGGAACAAATCGA
Found at i:32842282 original size:19 final size:19
Alignment explanation
Indices: 32842254--32842344 Score: 125
Period size: 19 Copynumber: 4.9 Consensus size: 19
32842244 ATAATCTTCA
* *
32842254 ATGATTTGCAATATTAGAT
1 ATGATATGCAATCTTAGAT
*
32842273 GTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
32842292 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
32842309 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
32842327 ATGATATACAATCTTAGA
1 ATGATATGCAATCTTAGA
32842345 AGATATGATT
Statistics
Matches: 64, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
17 16 0.25
18 16 0.25
19 32 0.50
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:32842294 original size:14 final size:15
Alignment explanation
Indices: 32842275--32842330 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
32842265 TATTAGATGT
32842275 GATATG-CAATCTTA
1 GATATGACAATCTTA
32842289 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
32842306 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
32842324 GATATGA
1 GATATGA
32842331 TATACAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:32842323 original size:35 final size:37
Alignment explanation
Indices: 32842262--32842351 Score: 125
Period size: 35 Copynumber: 2.5 Consensus size: 37
32842252 CAATGATTTG
* *
32842262 CAATATTAGATGTGATATGCAATCTTAGATATG-ATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGAATA
32842298 CAATCTTAGATATGAT-TGCAATCTTAGATATGATATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGA-ATA
32842335 CAATCTTAGA-A-GATATG
1 CAATCTTAGATATGATATG
32842352 ATTTTGTAAT
Statistics
Matches: 49, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
35 19 0.39
36 17 0.35
37 13 0.27
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.36
Consensus pattern (37 bp):
CAATCTTAGATATGATATGCAATCTTAGATATGAATA
Found at i:32852523 original size:4 final size:4
Alignment explanation
Indices: 32852514--32852543 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
32852504 TACATAAGTG
32852514 AATA AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AA
32852544 ACATGGCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:32856604 original size:42 final size:42
Alignment explanation
Indices: 32856535--32856647 Score: 156
Period size: 42 Copynumber: 2.7 Consensus size: 42
32856525 TTAGAGTTTA
* *
32856535 CATGTAAGACCATATCTGGGATATGGCATCGATATGAGATTT
1 CATGTAAGACCATAGCTGGGATATGGCATCGATATGAGATCT
* *
32856577 CGTGTAAG-CCATAGCTGGGCTATTGGCATCGATATGAGATCT
1 CATGTAAGACCATAGCTGGGATA-TGGCATCGATATGAGATCT
* *
32856619 CATGTAAGATCATATCTGGGATATGGCAT
1 CATGTAAGACCATAGCTGGGATATGGCAT
32856648 TGGTATATTA
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
41 12 0.20
42 38 0.62
43 11 0.18
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (42 bp):
CATGTAAGACCATAGCTGGGATATGGCATCGATATGAGATCT
Found at i:32866507 original size:46 final size:46
Alignment explanation
Indices: 32866457--32866629 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
32866447 TGGTTGAGCA
*
32866457 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * * *
32866503 TCCGAACTCGTTGAGTTGAGTTCGACTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
32866550 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
32866596 -CCCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTA
32866630 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 16, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
43 6 0.06
45 7 0.07
46 55 0.53
47 27 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:32866891 original size:19 final size:20
Alignment explanation
Indices: 32866854--32866891 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
32866844 ATAAGGTGGT
32866854 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
32866874 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
32866892 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:32874180 original size:40 final size:40
Alignment explanation
Indices: 32874135--32874210 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 40
32874125 ATGACAGCCA
32874135 GAATGAAGAGTGCAAAATCCTCGTACCACTATGACCGCAG
1 GAATGAAGAGTGCAAAATCCTCGTACCACTATGACCGCAG
* *
32874175 GAATGAGGAGTGCAAACTCCTCGTACCACTATGACC
1 GAATGAAGAGTGCAAAATCCTCGTACCACTATGACC
32874211 ATGCAACCAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.33, C:0.26, G:0.22, T:0.18
Consensus pattern (40 bp):
GAATGAAGAGTGCAAAATCCTCGTACCACTATGACCGCAG
Found at i:32874817 original size:13 final size:13
Alignment explanation
Indices: 32874799--32874838 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
32874789 AGTCCCTTTA
32874799 TTTTATTATTATT
1 TTTTATTATTATT
*
32874812 TTTTATTACTATT
1 TTTTATTATTATT
*
32874825 TTTAATT-TTATT
1 TTTTATTATTATT
32874837 TT
1 TT
32874839 CCTTTATTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
12 6 0.25
13 18 0.75
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.75
Consensus pattern (13 bp):
TTTTATTATTATT
Found at i:32874852 original size:11 final size:11
Alignment explanation
Indices: 32874831--32874860 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
32874821 TATTTTTAAT
32874831 TTTATTT-TCC
1 TTTATTTATCC
32874841 TTTATTTATCC
1 TTTATTTATCC
32874852 TTTATTTAT
1 TTTATTTAT
32874861 TTTTGAATAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.37
11 12 0.63
ACGTcount: A:0.17, C:0.13, G:0.00, T:0.70
Consensus pattern (11 bp):
TTTATTTATCC
Found at i:32879813 original size:40 final size:40
Alignment explanation
Indices: 32879626--32879814 Score: 231
Period size: 40 Copynumber: 4.7 Consensus size: 40
32879616 GCTCCTCGTT
* * *
32879626 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTATCTCGCA
* *
32879666 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTATCTCGCA
* *
32879706 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTATCTCGCA
* * * *
32879746 CAAAGGCCTTC-GGATCTTAGTCCGGATATGGTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGT-ATC-TCGCA
32879787 CAAA-GCCTTCGGGACTTAGCCCGGATAT
1 CAAATGCCTTCGGGACTTAGCCCGGATAT
32879815 CATTCAAATA
Statistics
Matches: 133, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.02
40 118 0.89
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTATCTCGCA
Found at i:32886325 original size:21 final size:22
Alignment explanation
Indices: 32886301--32886343 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
32886291 TATTGTTACT
32886301 ATTATTTTTATTAA-TA-TATTA
1 ATTATTTTT-TTAAGTATTATTA
32886322 ATTATTTTTTTAAGTATTATTA
1 ATTATTTTTTTAAGTATTATTA
32886344 TTACTAATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 4 0.20
21 11 0.55
22 5 0.25
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (22 bp):
ATTATTTTTTTAAGTATTATTA
Found at i:32886408 original size:13 final size:14
Alignment explanation
Indices: 32886384--32886414 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
32886374 ATTATTATCA
32886384 ATATTAATATATGT
1 ATATTAATATATGT
32886398 ATATT-ATATATGT
1 ATATTAATATATGT
32886411 ATAT
1 ATAT
32886415 ATTCATACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (14 bp):
ATATTAATATATGT
Found at i:32886511 original size:12 final size:12
Alignment explanation
Indices: 32886496--32886527 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
32886486 TATATTTCAT
*
32886496 TATTATTTTTAA
1 TATTATTATTAA
32886508 TATTATTATTAA
1 TATTATTATTAA
32886520 TATTATTA
1 TATTATTA
32886528 GATGTTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
TATTATTATTAA
Found at i:32886594 original size:26 final size:24
Alignment explanation
Indices: 32886543--32886663 Score: 82
Period size: 26 Copynumber: 4.7 Consensus size: 24
32886533 TATTTATTCA
* * * *
32886543 TAATATGTATATTATGTAAATGTCT
1 TAATAT-TATATTATATAATTTTTT
*
32886568 TAATATTATATTATATGTATTTTTCT
1 TAATATTATATTATAT-AATTTTT-T
*
32886594 TATATATGT-TATGTATATAAGTTTTT
1 TA-ATAT-TATAT-TATATAATTTTTT
*
32886620 TAATATTATATTTTATACATATTTTT
1 TAATATTATATTATATA-AT-TTTTT
32886646 TAATATTATTAGTTATAT
1 TAATATTA-TA-TTATAT
32886664 TTTTTATATA
Statistics
Matches: 76, Mismatches: 10, Indels: 17
0.74 0.10 0.17
Matches are distributed among these distances:
24 15 0.20
25 17 0.22
26 19 0.25
27 14 0.18
28 11 0.14
ACGTcount: A:0.34, C:0.02, G:0.07, T:0.57
Consensus pattern (24 bp):
TAATATTATATTATATAATTTTTT
Found at i:32886708 original size:21 final size:20
Alignment explanation
Indices: 32886675--32886717 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
32886665 TTTTATATAC
32886675 TATTACATGTATACTTCTAA
1 TATTACATGTATACTTCTAA
* *
32886695 TATTATATCGTATATTTCTAA
1 TATTACAT-GTATACTTCTAA
32886716 TA
1 TA
32886718 CCATCATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.35, C:0.12, G:0.05, T:0.49
Consensus pattern (20 bp):
TATTACATGTATACTTCTAA
Found at i:32894004 original size:20 final size:20
Alignment explanation
Indices: 32893979--32894018 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
32893969 TTATTTTTTT
32893979 TACATATATATATTGTCGAA
1 TACATATATATATTGTCGAA
32893999 TACATATATATATTGTCGAA
1 TACATATATATATTGTCGAA
32894019 ACCATTTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (20 bp):
TACATATATATATTGTCGAA
Found at i:32894678 original size:21 final size:21
Alignment explanation
Indices: 32894653--32894693 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
32894643 TACTAGGTAG
32894653 ATAAAAAATGAATAC-TACGAT
1 ATAAAAAAT-AATACATACGAT
*
32894674 ATAAAGAATAATACATACGA
1 ATAAAAAATAATACATACGA
32894694 AGCAAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.22
Consensus pattern (21 bp):
ATAAAAAATAATACATACGAT
Found at i:32894993 original size:17 final size:18
Alignment explanation
Indices: 32894954--32894996 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
32894944 TAAGGAAAAT
*
32894954 AATATATATAATAAGTAAT
1 AATA-ATATAATAAGTAAA
*
32894973 AATAATAT-ATAATTAAA
1 AATAATATAATAAGTAAA
32894990 AATAATA
1 AATAATA
32894997 CTCATAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 14 0.64
18 4 0.18
19 4 0.18
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (18 bp):
AATAATATAATAAGTAAA
Found at i:32894993 original size:20 final size:19
Alignment explanation
Indices: 32894932--32895079 Score: 65
Period size: 20 Copynumber: 7.5 Consensus size: 19
32894922 AAAGAGATGT
**
32894932 AAAATAATAAT-T-TAAGG
1 AAAATAATAATATATAATA
32894949 AAAATAAT-ATATATAATA
1 AAAATAATAATATATAATA
*
32894967 AGTAATAATAATATATAATTA
1 A-AAATAATAATATATAA-TA
*
32894988 AAAATAATACTCATAATAA-A
1 AAAATAATAAT-AT-ATAATA
* *
32895008 ATAATTTTATAATATATAATA
1 A-AA-ATAATAATATATAATA
*
32895029 TAAAAGTAA-AAT-TAAAATAA
1 -AAAA-TAATAATATATAAT-A
*
32895049 ACAAATAATAAAATATATATA
1 A-AAATAATAATATATA-ATA
*
32895070 TAGAATAATA
1 -AAAATAATA
32895080 TAATAAATAT
Statistics
Matches: 99, Mismatches: 14, Indels: 32
0.68 0.10 0.22
Matches are distributed among these distances:
16 2 0.02
17 9 0.09
18 4 0.04
19 15 0.15
20 31 0.31
21 25 0.25
22 13 0.13
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.32
Consensus pattern (19 bp):
AAAATAATAATATATAATA
Found at i:32896679 original size:83 final size:83
Alignment explanation
Indices: 32896539--32896889 Score: 540
Period size: 83 Copynumber: 4.2 Consensus size: 83
32896529 CGATTTGTGG
* * * * *
32896539 GGATGCCAAATCAACTTGAGTCTGTTTTGAGAACATTTGTGAGTCAAATCTTCTACGTCCTTGAT
1 GGATGCCAAACCATCTTGAGTCTG-TTTGAGAACATTTGAGAGTCAAATCTGCTACGTCCTCGAT
32896604 TTGTTCCTTGTAAGCACAA
65 TTGTTCCTTGTAAGCACAA
* * *
32896623 GGATGCCAAACCATCTTGAGTCTGTTTGAGAATATTTGAGAGTCATATCTGCTACGTCCTCAATT
1 GGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCAAATCTGCTACGTCCTCGATT
32896688 TGTTCCTTGTAAGCACAA
66 TGTTCCTTGTAAGCACAA
* * *
32896706 GGATGCCAAACCATCTTGAGTCTGTTTAAGAACATTTGAGAGTCATATCTGCTACGTCTTCGATT
1 GGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCAAATCTGCTACGTCCTCGATT
32896771 TGTTCCTTGTAAGCACAA
66 TGTTCCTTGTAAGCACAA
* *
32896789 GGATGCCAAACCATCTTGAGACTGTTTGAGAACATTTGAGAGTCAAATCTGCTATGTCCTCGATT
1 GGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCAAATCTGCTACGTCCTCGATT
*
32896854 TGTTCCTTGTAAACACAA
66 TGTTCCTTGTAAGCACAA
* * *
32896872 GAATACCAAATCATCTTG
1 GGATGCCAAACCATCTTG
32896890 GATCTGCTTT
Statistics
Matches: 246, Mismatches: 21, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
83 224 0.91
84 22 0.09
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (83 bp):
GGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCAAATCTGCTACGTCCTCGATT
TGTTCCTTGTAAGCACAA
Found at i:32897029 original size:166 final size:166
Alignment explanation
Indices: 32896856--32897179 Score: 587
Period size: 166 Copynumber: 2.0 Consensus size: 166
32896846 CCTCGATTTG
*
32896856 TTCCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTTAGTATAAACATCTGAAGGCTA
1 TTCCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGCTA
* *
32896921 GATCTGCTATATTTGAGAACGTCTAAGAGTCAAATCTGCTATGT-TCTCGATTTGTTTCTTGTAA
66 GATCTACTATATTTGAGAACGTCTAAGAGTCAAATCTGCTATGTCT-TCGATTTGTTCCTTGTAA
32896985 ACACAAGAATACCAAATCATCTTGGATCTGCTTTAGT
130 ACACAAGAATACCAAATCATCTTGGATCTGCTTTAGT
*
32897022 TTCCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTA
1 TTCCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGCTA
*
32897087 GATCTACTATATTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAA
66 GATCTACTATATTTGAGAACGTCTAAGAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAA
32897152 CACAAGAATACCAAATCATCTTGGATCT
131 CACAAGAATACCAAATCATCTTGGATCT
32897180 ACTTCAGCAT
Statistics
Matches: 152, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
166 151 0.99
167 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34
Consensus pattern (166 bp):
TTCCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGCTA
GATCTACTATATTTGAGAACGTCTAAGAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAA
CACAAGAATACCAAATCATCTTGGATCTGCTTTAGT
Found at i:32897035 original size:47 final size:46
Alignment explanation
Indices: 32896974--32897064 Score: 173
Period size: 47 Copynumber: 2.0 Consensus size: 46
32896964 TTCTCGATTT
32896974 GTTTCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTTA
1 GTTTCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTTA
32897020 GTTTCCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTT
1 GTTT-CTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTT
32897065 CAGTATAAAC
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
46 4 0.09
47 40 0.91
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34
Consensus pattern (46 bp):
GTTTCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTTA
Found at i:32897235 original size:119 final size:119
Alignment explanation
Indices: 32897022--32897332 Score: 534
Period size: 119 Copynumber: 2.6 Consensus size: 119
32897012 CTGCTTTAGT
* **
32897022 TTCCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGT-T
1 TTCCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGCATAAATGTCTGAA-GTCT
* * *
32897086 AGATCTACTATATTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCTTCGATTTG
65 AGATCTGCTATATTTGAGAACGTCTAAGAGTCAAATCTGCTATGTCCTCGATTTG
*
32897141 TTCCTTGTAAACACAAGAATACCAAATCATCTTGGATCTACTTCAGCATAAATGTCTGAAGTCTA
1 TTCCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGCATAAATGTCTGAAGTCTA
32897206 GATCTGCTATATTTGAGAACGTCTAAGAGTCAAATCTGCTATGTCCTCGATTTG
66 GATCTGCTATATTTGAGAACGTCTAAGAGTCAAATCTGCTATGTCCTCGATTTG
*
32897260 TTTCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGCATAAATGTCTGAAGTCTA
1 TTCCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGCATAAATGTCTGAAGTCTA
32897325 GATCTGCT
66 GATCTGCT
32897333 GTCTTCAATT
Statistics
Matches: 182, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
118 2 0.01
119 180 0.99
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (119 bp):
TTCCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTCAGCATAAATGTCTGAAGTCTA
GATCTGCTATATTTGAGAACGTCTAAGAGTCAAATCTGCTATGTCCTCGATTTG
Found at i:32908697 original size:21 final size:21
Alignment explanation
Indices: 32908672--32908712 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
32908662 TACTAGGTAG
32908672 ATAAAAAATGAATAC-TACGAT
1 ATAAAAAAT-AATACATACGAT
*
32908693 ATAAAGAATAATACATACGA
1 ATAAAAAATAATACATACGA
32908713 AGCAAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.22
Consensus pattern (21 bp):
ATAAAAAATAATACATACGAT
Found at i:32908949 original size:15 final size:15
Alignment explanation
Indices: 32908929--32908960 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
32908919 AATATAAAAC
32908929 ATATAAAAAAAACTA
1 ATATAAAAAAAACTA
*
32908944 ATATAAAAAAAAGTA
1 ATATAAAAAAAACTA
32908959 AT
1 AT
32908961 TGATTGCTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.72, C:0.03, G:0.03, T:0.22
Consensus pattern (15 bp):
ATATAAAAAAAACTA
Found at i:32909332 original size:25 final size:24
Alignment explanation
Indices: 32909286--32909340 Score: 56
Period size: 25 Copynumber: 2.2 Consensus size: 24
32909276 ACATATATAT
*
32909286 ATAAAAAACAATAAATAATATAAAA
1 ATAAAAAACAATAAAGAATAT-AAA
* * * *
32909311 ATAAAACATAATAAAGATTATATA
1 ATAAAAAACAATAAAGAATATAAA
32909335 ATAAAA
1 ATAAAA
32909341 TGTAATATAA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
24 8 0.32
25 17 0.68
ACGTcount: A:0.71, C:0.04, G:0.02, T:0.24
Consensus pattern (24 bp):
ATAAAAAACAATAAAGAATATAAA
Found at i:32909505 original size:17 final size:18
Alignment explanation
Indices: 32909466--32909508 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
32909456 TAAGGAAAAT
*
32909466 AATATATATAATAAGTAAT
1 AATA-ATATAATAAGTAAA
*
32909485 AATAATAT-ATAATTAAA
1 AATAATATAATAAGTAAA
32909502 AATAATA
1 AATAATA
32909509 CTCATAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 14 0.64
18 4 0.18
19 4 0.18
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (18 bp):
AATAATATAATAAGTAAA
Found at i:32909505 original size:20 final size:19
Alignment explanation
Indices: 32909444--32909591 Score: 65
Period size: 20 Copynumber: 7.5 Consensus size: 19
32909434 AAAGAGATGT
**
32909444 AAAATAATAAT-T-TAAGG
1 AAAATAATAATATATAATA
32909461 AAAATAAT-ATATATAATA
1 AAAATAATAATATATAATA
*
32909479 AGTAATAATAATATATAATTA
1 A-AAATAATAATATATAA-TA
*
32909500 AAAATAATACTCATAATAA-A
1 AAAATAATAAT-AT-ATAATA
* *
32909520 ATAATTTTATAATATATAATA
1 A-AA-ATAATAATATATAATA
*
32909541 TAAAAGTAA-AAT-TAAAATAA
1 -AAAA-TAATAATATATAAT-A
*
32909561 ACAAATAATAAAATATATATA
1 A-AAATAATAATATATA-ATA
*
32909582 TAGAATAATA
1 -AAAATAATA
32909592 TAATAAATAT
Statistics
Matches: 99, Mismatches: 14, Indels: 32
0.68 0.10 0.22
Matches are distributed among these distances:
16 2 0.02
17 9 0.09
18 4 0.04
19 15 0.15
20 31 0.31
21 25 0.25
22 13 0.13
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.32
Consensus pattern (19 bp):
AAAATAATAATATATAATA
Found at i:32911489 original size:130 final size:132
Alignment explanation
Indices: 32911332--32911635 Score: 373
Period size: 130 Copynumber: 2.3 Consensus size: 132
32911322 GACGAGATTT
* * *
32911332 GATATTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAA
1 GATATTTGGCAATTCG-GGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCGCGTTGGCTCAAAA
* * *
32911397 TAATCGAATATCCCTTTAGAG-TTTCACCCATGTCTTTT-AAAAATT-CT-TTAAACAAAGGTGA
65 CAATCGAATATCCCTTTAG-GTTTTCACCCATGT-TTTTAAAAAATTACTCTAAAACAAAGGTAA
32911458 TGTTC
128 TGTTC
* * * * *
32911463 GATATTTGGCAACTCGGGAATCGTGCCCTATCGTGCTGGGTTGCGATTTCTCGTTGGTTCAAAGC
1 GATATTTGGCAATTCGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCGCGTTGGCTCAAAAC
* * * * * *
32911528 AGTTGAATATTCCTTTAGGTTTTCACTCATGTTTTTAAAAAATTACTCTAAAACGAATGTAATGT
66 AATCGAATATCCCTTTAGGTTTTCACCCATGTTTTTAAAAAATTACTCTAAAACAAAGGTAATGT
32911593 TC
131 TC
* *
32911595 GATGTTTGGCAATTCAAGGAATCGTGCCCTATCGTGCTGGG
1 GATATTTGGCAATTC-GGGAATCGTGCCCTATCGTGCTGGG
32911636 CTGCGGTTCC
Statistics
Matches: 148, Mismatches: 20, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
129 5 0.03
130 74 0.50
131 17 0.11
132 28 0.19
133 24 0.16
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.35
Consensus pattern (132 bp):
GATATTTGGCAATTCGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCGCGTTGGCTCAAAAC
AATCGAATATCCCTTTAGGTTTTCACCCATGTTTTTAAAAAATTACTCTAAAACAAAGGTAATGT
TC
Found at i:32911686 original size:133 final size:129
Alignment explanation
Indices: 32911332--32911695 Score: 358
Period size: 130 Copynumber: 2.8 Consensus size: 129
32911322 GACGAGATTT
* * * * *
32911332 GATATTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGC-TCAAA
1 GATATTTGGCAATTC-AGGAATCGTGCCCTATCGTGCTGGGTTGCGATTTCCCGTTT-CTTCAAA
* * * * * * *
32911396 ATAATCGAATATCCCTTTAGAGTTTCACCCATGTCTTTTAAAAATTCTTTAAACAAAGGTGATGT
64 ATGATCGAATATTCCTTTGGAATTTCACTCATGT-TTTTAAAAATTCTTAAAACAAAGGTAATGT
32911461 TC
128 TC
* * * **
32911463 GATATTTGGCAACTCGGGAATCGTGCCCTATCGTGCTGGGTTGCGATTTCTCGTTGGTTC-AAA-
1 GATATTTGGCAATTCAGGAATCGTGCCCTATCGTGCTGGGTTGCGATTTCCCGTTTCTTCAAAAT
* * * *
32911526 GCAGTTGAATATTCCTTTAGG-TTTTCACTCATGTTTTTAAAAAATTACTCTAAAACGAATGTAA
66 G-A-TCGAATATTCCTTT-GGAATTTCACTCATGTTTTT-AAAAATT-CT-TAAAACAAAGGTAA
32911590 TGTTC
125 TGTTC
* * * *
32911595 GATGTTTGGCAATTCAAGGAATCGTGCCCTATCGTGCTGGGCTGCGGTTCCCCGTTTCTTCAAAA
1 GATATTTGGCAATTC-AGGAATCGTGCCCTATCGTGCTGGGTTGCGATTTCCCGTTTCTTCAAAA
* * *
32911660 TGATCGAATGTTCCATTGGAACTTCACTCATGTTTT
65 TGATCGAATATTCCTTTGGAATTTCACTCATGTTTT
32911696 CCAAAGCGAG
Statistics
Matches: 190, Mismatches: 32, Indels: 20
0.79 0.13 0.08
Matches are distributed among these distances:
129 8 0.04
130 67 0.35
131 17 0.09
132 30 0.16
133 63 0.33
134 4 0.02
135 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.36
Consensus pattern (129 bp):
GATATTTGGCAATTCAGGAATCGTGCCCTATCGTGCTGGGTTGCGATTTCCCGTTTCTTCAAAAT
GATCGAATATTCCTTTGGAATTTCACTCATGTTTTTAAAAATTCTTAAAACAAAGGTAATGTTC
Found at i:32913223 original size:13 final size:13
Alignment explanation
Indices: 32913205--32913233 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
32913195 GAAAAACTGA
32913205 GAGATACACTTGT
1 GAGATACACTTGT
32913218 GAGATACACTTGT
1 GAGATACACTTGT
32913231 GAG
1 GAG
32913234 GAATTAAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (13 bp):
GAGATACACTTGT
Found at i:32923533 original size:42 final size:43
Alignment explanation
Indices: 32923423--32923588 Score: 169
Period size: 43 Copynumber: 3.9 Consensus size: 43
32923413 GGTTATTGAG
* * * * *
32923423 ATGTGATTACATGTAAGACCATGTTTGAGACATTGGAATTGTAT
1 ATGTGA-TACGTGTAAGACCATGTCTGGGACATTGGCATCGTAT
32923467 -TGTGACTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAT
1 ATGTGA-TACGTGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * *
32923510 AT-TGATTCGTGTAAGACCCTGTCTGGGACAGTGGCATCG-AT
1 ATGTGATACGTGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * * *
32923551 ATGTGATAACATCTAAGACCATATCTGGGATA-TGGCAT
1 ATGTGAT-ACGTGTAAGACCATGTCTGGGACATTGGCAT
32923589 TATACGAGCT
Statistics
Matches: 104, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
41 4 0.04
42 41 0.39
43 58 0.56
44 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (43 bp):
ATGTGATACGTGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:32926877 original size:49 final size:47
Alignment explanation
Indices: 32926768--32926886 Score: 143
Period size: 47 Copynumber: 2.5 Consensus size: 47
32926758 TAATGCCAAT
* * *
32926768 GCCATGTCCCAGACATGGTCTTACACCGGCTCATCCATCAAGTCGAT
1 GCCATGTCCCAGACATGGTCTTACACCGACTCATCAATCAAGTCGAC
* *
32926815 GCCATGTCCCAGACATAGTCTTACACTGACT-ATCAAAAT-ATAGGTCGAC
1 GCCATGTCCCAGACATGGTCTTACACCGACTCATC--AATCA-A-GTCGAC
32926864 GCCATGTCCCAGACATGGTCTTA
1 GCCATGTCCCAGACATGGTCTTA
32926887 TACTAGTTCT
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
46 3 0.05
47 29 0.47
48 3 0.05
49 27 0.44
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.24
Consensus pattern (47 bp):
GCCATGTCCCAGACATGGTCTTACACCGACTCATCAATCAAGTCGAC
Done.