Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 104 of 310
Found at i:33266204 original size:27 final size:27
Alignment explanation
Indices: 33266141--33266272 Score: 115
Period size: 27 Copynumber: 4.9 Consensus size: 27
33266131 TTACCTTCAA
* *
33266141 TTGTGAAATTACTAAAATACCCCTA-T
1 TTGTAAAATTACCAAAATACCCCTAGT
** *
33266167 AGGGTAGAATTACCAAAATACCCCTAGT
1 -TTGTAAAATTACCAAAATACCCCTAGT
** *
33266195 TTGTAAAATTA-CAAAATACTACTGGT
1 TTGTAAAATTACCAAAATACCCCTAGT
* * ** * *
33266221 TTATGAAATTACTGAAATACCCTTAAT
1 TTGTAAAATTACCAAAATACCCCTAGT
33266248 TTGTAAAATTACCAAAATACCCCTA
1 TTGTAAAATTACCAAAATACCCCTA
33266273 ATTTACACAA
Statistics
Matches: 78, Mismatches: 25, Indels: 4
0.73 0.23 0.04
Matches are distributed among these distances:
26 21 0.27
27 56 0.72
28 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTAGT
Found at i:33266211 original size:53 final size:56
Alignment explanation
Indices: 33266141--33266272 Score: 134
Period size: 53 Copynumber: 2.4 Consensus size: 56
33266131 TTACCTTCAA
* *
33266141 TTGTGAAATTACTAAAATACCCCTA-TAGG-GTA-G-AATTACCAAAATACCCCTAGT
1 TTGTAAAATTAC-AAAATACCCCTACT-GGTGTATGAAATTACCAAAATACCCCTAAT
* ** *
33266195 TTGTAAAATTACAAAATA---CTACTGGTTTATGAAATTACTGAAATACCCTTAAT
1 TTGTAAAATTACAAAATACCCCTACTGGTGTATGAAATTACCAAAATACCCCTAAT
33266248 TTGTAAAATTACCAAAATACCCCTA
1 TTGTAAAATTA-CAAAATACCCCTA
33266273 ATTTACACAA
Statistics
Matches: 64, Mismatches: 6, Indels: 13
0.77 0.07 0.16
Matches are distributed among these distances:
50 5 0.08
51 3 0.05
52 1 0.02
53 34 0.53
54 18 0.28
57 3 0.05
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (56 bp):
TTGTAAAATTACAAAATACCCCTACTGGTGTATGAAATTACCAAAATACCCCTAAT
Found at i:33266284 original size:27 final size:27
Alignment explanation
Indices: 33266174--33266295 Score: 104
Period size: 27 Copynumber: 4.6 Consensus size: 27
33266164 TATAGGGTAG
* *
33266174 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAATTTATAA
** ** *
33266201 AATTA-CAAAATACTACTGGTTTATGA
1 AATTACCAAAATACCCCTAATTTATAA
** * *
33266227 AATTACTGAAATACCCTTAATTTGTAA
1 AATTACCAAAATACCCCTAATTTATAA
* *
33266254 AATTACCAAAATACCCCTAATTTACAC
1 AATTACCAAAATACCCCTAATTTATAA
33266281 AATTA-CAGAAATACC
1 AATTACCA-AAATACC
33266296 ATTGACTTTC
Statistics
Matches: 73, Mismatches: 20, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
26 23 0.32
27 50 0.68
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAATTTATAA
Found at i:33266292 original size:54 final size:53
Alignment explanation
Indices: 33266174--33266372 Score: 168
Period size: 54 Copynumber: 3.7 Consensus size: 53
33266164 TATAGGGTAG
* * *
33266174 AATTACCA-AAATACCCCTAGTTTGTAAAATTA-CAAAATACTACTGGTTTATGA
1 AATTA-CAGAAATACCCTTAGTTTGTAAAATTACCAAAATACCACTGGTTTA-CA
* * * **
33266227 AATTACTGAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTAATTTACA
1 AATTACAGAAATACCCTTAGTTTGTAAAATTACCAAAATACCACTGGTTTACA
* * * ** *
33266280 CAATTACAGAAATACCATTGACTTTCTAAAAATTATAAAAATACCATTGGTTTACAA
1 -AATTACAGAAATACCCTT-AGTTTGT-AAAATTACCAAAATACCACTGGTTTAC-A
* * * *
33266337 AATTACTGAAATACCCTTGGTTTGTACATTTACCAA
1 AATTACAGAAATACCCTTAGTTTGTAAAATTACCAA
33266373 CACCCTTGTA
Statistics
Matches: 113, Mismatches: 27, Indels: 11
0.75 0.18 0.07
Matches are distributed among these distances:
52 1 0.01
53 28 0.25
54 37 0.33
55 9 0.08
56 37 0.33
57 1 0.01
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.33
Consensus pattern (53 bp):
AATTACAGAAATACCCTTAGTTTGTAAAATTACCAAAATACCACTGGTTTACA
Found at i:33266323 original size:56 final size:54
Alignment explanation
Indices: 33266198--33266351 Score: 139
Period size: 56 Copynumber: 2.8 Consensus size: 54
33266188 CCCTAGTTTG
* ** ** * *
33266198 TAAAATTAC-AAAATACTACTGGTTTATGAAATTACTGAAATACCCTTAATTTG
1 TAAAATTACAAAAATACCACTAATTTACAAAATTACTGAAATACCATTAATTTC
* * * * *
33266251 TAAAATTACCAAAATACCCCTAATTTACACAATTACAGAAATACCATTGACTTTC
1 TAAAATTACAAAAATACCACTAATTTACAAAATTACTGAAATACCATT-AATTTC
* * **
33266306 TAAAAATTATAAAAATACCATTGGTTTACAAAATTACTGAAATACC
1 T-AAAATTACAAAAATACCACTAATTTACAAAATTACTGAAATACC
33266352 CTTGGTTTGT
Statistics
Matches: 79, Mismatches: 19, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
53 9 0.11
54 29 0.37
55 5 0.06
56 36 0.46
ACGTcount: A:0.45, C:0.17, G:0.06, T:0.32
Consensus pattern (54 bp):
TAAAATTACAAAAATACCACTAATTTACAAAATTACTGAAATACCATTAATTTC
Found at i:33266348 original size:27 final size:27
Alignment explanation
Indices: 33266274--33266359 Score: 77
Period size: 27 Copynumber: 3.1 Consensus size: 27
33266264 ATACCCCTAA
* * *
33266274 TTTACACAATTACAGAAATACCATTGAC
1 TTTACAAAATTACTGAAATACCATTG-G
*
33266302 TTT-CTAAAAATTA-TAAAAATACCATTGG
1 TTTAC--AAAATTACT-GAAATACCATTGG
*
33266330 TTTACAAAATTACTGAAATACCCTTGG
1 TTTACAAAATTACTGAAATACCATTGG
33266357 TTT
1 TTT
33266360 GTACATTTAC
Statistics
Matches: 47, Mismatches: 6, Indels: 11
0.73 0.09 0.17
Matches are distributed among these distances:
27 22 0.47
28 7 0.15
29 18 0.38
ACGTcount: A:0.41, C:0.16, G:0.08, T:0.35
Consensus pattern (27 bp):
TTTACAAAATTACTGAAATACCATTGG
Found at i:33266441 original size:27 final size:27
Alignment explanation
Indices: 33266411--33266475 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
33266401 ACTCTTAATA
33266411 GGTAAAATGACCGTAA-AGCCCCTGTAG
1 GGTAAAATGACCGTAATA-CCCCTGTAG
* * *
33266438 GGTAAAGTAACCGTAATACCCCTGTAT
1 GGTAAAATGACCGTAATACCCCTGTAG
33266465 GGTAAAATGAC
1 GGTAAAATGAC
33266476 AAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCCTGTAG
Found at i:33267362 original size:25 final size:26
Alignment explanation
Indices: 33267285--33267355 Score: 99
Period size: 26 Copynumber: 2.8 Consensus size: 26
33267275 AGGAAGTGCT
* * **
33267285 AAAAGGGCTATGCCCTAGTTTA-CTG
1 AAAAGGGCTTTGCCCCAGTTTACCAA
33267310 AAAAGGGCTTTGCCCCAGTTTACCAA
1 AAAAGGGCTTTGCCCCAGTTTACCAA
33267336 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
33267356 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
25 20 0.49
26 21 0.51
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (26 bp):
AAAAGGGCTTTGCCCCAGTTTACCAA
Found at i:33271639 original size:40 final size:41
Alignment explanation
Indices: 33271523--33271639 Score: 157
Period size: 40 Copynumber: 2.9 Consensus size: 41
33271513 CCTTCTCGAG
* *
33271523 AATTAAAAGTGAATAGGATTTATTCATGAGTCACTA-AAAGA
1 AATT-AAAGTGAATAGGATTTATTCCTGATTCACTATAAAGA
*
33271564 AATTAAAGTGAATAGGATTTATTCCTGATTCACTATAAATA
1 AATTAAAGTGAATAGGATTTATTCCTGATTCACTATAAAGA
* * *
33271605 TA-TAAAGTGGATAGGATTTGTTCCTGATTCACTAT
1 AATTAAAGTGAATAGGATTTATTCCTGATTCACTAT
33271640 GGTAACTTAA
Statistics
Matches: 69, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
40 60 0.87
41 9 0.13
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.35
Consensus pattern (41 bp):
AATTAAAGTGAATAGGATTTATTCCTGATTCACTATAAAGA
Found at i:33281519 original size:35 final size:35
Alignment explanation
Indices: 33281469--33281538 Score: 104
Period size: 35 Copynumber: 2.0 Consensus size: 35
33281459 GAGGTCACGA
*
33281469 AAAGAGTGAGCCCAGTTGCATATCGCTTAGCTTTG
1 AAAGAGTGAGACCAGTTGCATATCGCTTAGCTTTG
* * *
33281504 AAAGAGTGGGACCAGTTGCGTATCGTTTAGCTTTG
1 AAAGAGTGAGACCAGTTGCATATCGCTTAGCTTTG
33281539 CCTGCGGAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (35 bp):
AAAGAGTGAGACCAGTTGCATATCGCTTAGCTTTG
Found at i:33282732 original size:6 final size:6
Alignment explanation
Indices: 33282714--33282751 Score: 67
Period size: 6 Copynumber: 6.2 Consensus size: 6
33282704 ATATTCAATA
33282714 TGAAAT ATGAAAT TGAAAT TGAAAT TGAAAT TGAAAT T
1 TGAAAT -TGAAAT TGAAAT TGAAAT TGAAAT TGAAAT T
33282752 TTATTGTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 25 0.81
7 6 0.19
ACGTcount: A:0.50, C:0.00, G:0.16, T:0.34
Consensus pattern (6 bp):
TGAAAT
Found at i:33285297 original size:38 final size:38
Alignment explanation
Indices: 33285246--33285454 Score: 148
Period size: 38 Copynumber: 5.0 Consensus size: 38
33285236 GGAATGAAAA
*
33285246 AACGTGGTGCTAAGTGGATATACCACGGTTATACGTGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
*
33285284 AACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGT
1 AACGTGGTGCTAAGTGGATATACCACG---------GTT-ATACATGT
* * * * *
33285332 AATGTGGTACTAAGTAGATATGCCACGGTTACATATATCGATTCATT
1 AACGTGGTGCTAAGTGGATATACCACGG-T---TATA-C-A-T--GT
* *
33285379 AACGTGGTGCTAAATGGATATACCACGGTTAAACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
* *
33285417 AACGTGGTGCTAAGTGGATATGCCATGGTTATACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
33285455 TAACTTGAAA
Statistics
Matches: 133, Mismatches: 19, Indels: 38
0.70 0.10 0.20
Matches are distributed among these distances:
38 62 0.47
40 2 0.02
41 1 0.01
42 4 0.03
43 5 0.04
44 1 0.01
45 1 0.01
46 1 0.01
47 26 0.20
48 30 0.23
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (38 bp):
AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
Found at i:33285405 original size:47 final size:48
Alignment explanation
Indices: 33285276--33285414 Score: 172
Period size: 48 Copynumber: 2.9 Consensus size: 48
33285266 TACCACGGTT
* * *
33285276 ATACGTGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATCG
* * * * *
33285324 ATACATGTAATGTGGTACTAAGTAGATATGCCACGGTTACATATATCG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATCG
* * *
33285372 ATTCAT-TAACGTGGTGCTAAATGGATATACCACGGTTAAACAT
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACAT
33285415 GTAACGTGGT
Statistics
Matches: 75, Mismatches: 16, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
47 30 0.40
48 45 0.60
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATCG
Found at i:33292827 original size:42 final size:42
Alignment explanation
Indices: 33292706--33292827 Score: 156
Period size: 43 Copynumber: 2.9 Consensus size: 42
33292696 TACCATACCA
* **
33292706 ATGTCATATCCCAGATATGGTCTTACATGGGATCTCATATCG
1 ATGTCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * *
33292748 ATGCCAATAGCCCAGCTATGGTCTTACAC-AAAGTCTCATATCG
1 ATGTC-ATATCCCAGATATGGTCTTACACGAAA-TCTCATATCG
*
33292791 ATGTCATATCCCAGATATGGTCTTACACGTAATCTCA
1 ATGTCATATCCCAGATATGGTCTTACACGAAATCTCA
33292828 AATAACCCTA
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
42 31 0.46
43 36 0.54
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGTCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:33298960 original size:20 final size:22
Alignment explanation
Indices: 33298909--33298956 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
33298899 GTAGGAACCC
*
33298909 AAGAAATTAAAGATAAAAAACG
1 AAGAGATTAAAGATAAAAAACG
* *
33298931 AAGAGATTAAAGCTAAAAAATG
1 AAGAGATTAAAGATAAAAAACG
33298953 AAGA
1 AAGA
33298957 TTAAGTACCT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.65, C:0.04, G:0.17, T:0.15
Consensus pattern (22 bp):
AAGAGATTAAAGATAAAAAACG
Found at i:33302945 original size:21 final size:21
Alignment explanation
Indices: 33302920--33302985 Score: 64
Period size: 20 Copynumber: 3.2 Consensus size: 21
33302910 TAGCCTTCGG
33302920 GCTTCCATTTAGCACTTATGT
1 GCTTCCATTTAGCACTTATGT
* ** *
33302941 GCTT-CAGTTAGC-CTTCGGG
1 GCTTCCATTTAGCACTTATGT
* *
33302960 GCTTCCGTTTAGCACTTTTGT
1 GCTTCCATTTAGCACTTATGT
33302981 GCTTC
1 GCTTC
33302986 AGTTAGATTT
Statistics
Matches: 34, Mismatches: 9, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
19 8 0.24
20 13 0.38
21 13 0.38
ACGTcount: A:0.12, C:0.26, G:0.21, T:0.41
Consensus pattern (21 bp):
GCTTCCATTTAGCACTTATGT
Found at i:33302950 original size:39 final size:40
Alignment explanation
Indices: 33302904--33302991 Score: 151
Period size: 40 Copynumber: 2.2 Consensus size: 40
33302894 TCTGATGAGA
33302904 TTCAGTTAGCCTTC-GGGCTTCCATTTAGCACTTATGTGC
1 TTCAGTTAGCCTTCGGGGCTTCCATTTAGCACTTATGTGC
* *
33302943 TTCAGTTAGCCTTCGGGGCTTCCGTTTAGCACTTTTGTGC
1 TTCAGTTAGCCTTCGGGGCTTCCATTTAGCACTTATGTGC
33302983 TTCAGTTAG
1 TTCAGTTAG
33302992 ATTTCAGGTA
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
39 14 0.30
40 32 0.70
ACGTcount: A:0.14, C:0.24, G:0.23, T:0.40
Consensus pattern (40 bp):
TTCAGTTAGCCTTCGGGGCTTCCATTTAGCACTTATGTGC
Found at i:33302991 original size:20 final size:20
Alignment explanation
Indices: 33302928--33302991 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 20
33302918 GGGCTTCCAT
33302928 TTAGCACTTATGTGCTTCAG
1 TTAGCACTTATGTGCTTCAG
** * *
33302948 TTAGC-CTTCGGGGCTTCCG
1 TTAGCACTTATGTGCTTCAG
*
33302967 TTTAGCACTTTTGTGCTTCAG
1 -TTAGCACTTATGTGCTTCAG
33302988 TTAG
1 TTAG
33302992 ATTTCAGGTA
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
19 10 0.29
20 14 0.41
21 10 0.29
ACGTcount: A:0.14, C:0.22, G:0.23, T:0.41
Consensus pattern (20 bp):
TTAGCACTTATGTGCTTCAG
Found at i:33310804 original size:21 final size:21
Alignment explanation
Indices: 33310779--33310843 Score: 82
Period size: 21 Copynumber: 3.2 Consensus size: 21
33310769 TAGCCTTCGA
33310779 GCTTCCGTTTAGCACTTTTGT
1 GCTTCCGTTTAGCACTTTTGT
* * *
33310800 GCTTCAG-TTAGC-C-TTCGG
1 GCTTCCGTTTAGCACTTTTGT
33310818 GCTTCCGTTTAGCACTTTTGT
1 GCTTCCGTTTAGCACTTTTGT
33310839 GCTTC
1 GCTTC
33310844 AGTTAGATTT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
18 9 0.26
19 6 0.17
20 6 0.17
21 14 0.40
ACGTcount: A:0.09, C:0.26, G:0.22, T:0.43
Consensus pattern (21 bp):
GCTTCCGTTTAGCACTTTTGT
Found at i:33310857 original size:39 final size:39
Alignment explanation
Indices: 33310763--33310849 Score: 165
Period size: 39 Copynumber: 2.2 Consensus size: 39
33310753 TCTGATGAGA
*
33310763 TTCAGTTAGCCTTCGAGCTTCCGTTTAGCACTTTTGTGC
1 TTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTTTGTGC
33310802 TTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTTTGTGC
1 TTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTTTGTGC
33310841 TTCAGTTAG
1 TTCAGTTAG
33310850 ATTTCGGGTA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.13, C:0.24, G:0.22, T:0.41
Consensus pattern (39 bp):
TTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTTTGTGC
Found at i:33321337 original size:18 final size:17
Alignment explanation
Indices: 33321304--33321337 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
33321294 TAAAGAGTAG
*
33321304 ATTAAAAAAAGTGAATA
1 ATTAAAAAAAGGGAATA
33321321 ATTAAAAAACAGGGAAT
1 ATTAAAAAA-AGGGAAT
33321338 TACCCGTGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.62, C:0.03, G:0.15, T:0.21
Consensus pattern (17 bp):
ATTAAAAAAAGGGAATA
Found at i:33327876 original size:10 final size:11
Alignment explanation
Indices: 33327847--33327939 Score: 77
Period size: 11 Copynumber: 8.5 Consensus size: 11
33327837 TTTTAAACAT
*
33327847 TATATA-TATA
1 TATATATTATG
*
33327857 TATATTTTATG
1 TATATATTATG
33327868 TA-ATATTATG
1 TATATATTATG
33327878 TATATATT-T-
1 TATATATTATG
33327887 TAATATATTATG
1 T-ATATATTATG
* *
33327899 TGTATATTTTG
1 TATATATTATG
*
33327910 TTTTGTATATTATG
1 ---TATATATTATG
33327924 TATATATTATG
1 TATATATTATG
33327935 TATAT
1 TATAT
33327940 GCTTTTAATA
Statistics
Matches: 68, Mismatches: 7, Indels: 15
0.76 0.08 0.17
Matches are distributed among these distances:
9 1 0.01
10 22 0.32
11 34 0.50
12 1 0.01
14 10 0.15
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.58
Consensus pattern (11 bp):
TATATATTATG
Found at i:33327885 original size:23 final size:22
Alignment explanation
Indices: 33327847--33327939 Score: 86
Period size: 23 Copynumber: 4.2 Consensus size: 22
33327837 TTTTAAACAT
*
33327847 TATA-TATATATATATTTTATG
1 TATATTATGTATATATTTTATG
*
33327868 TAATATTATGTATATATTTTA-A
1 T-ATATTATGTATATATTTTATG
* *
33327890 TATATTATGTGTATATTTTGTTTTG
1 TATATTA--TGTATATATT-TTATG
33327915 TATATTATGTATATA--TTATG
1 TATATTATGTATATATTTTATG
33327935 TATAT
1 TATAT
33327940 GCTTTTAATA
Statistics
Matches: 59, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
20 9 0.15
21 7 0.12
22 4 0.07
23 30 0.51
24 2 0.03
25 7 0.12
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.58
Consensus pattern (22 bp):
TATATTATGTATATATTTTATG
Found at i:33337036 original size:21 final size:21
Alignment explanation
Indices: 33336997--33337036 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
33336987 TGTGCAAGTC
**
33336997 TTGAGGAAATTATTTTTGAGA
1 TTGAGGAAATTATAGTTGAGA
*
33337018 TTGAGGAAATTCTAGTTGA
1 TTGAGGAAATTATAGTTGA
33337037 AACTTAATCC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.33, C:0.03, G:0.25, T:0.40
Consensus pattern (21 bp):
TTGAGGAAATTATAGTTGAGA
Found at i:33339366 original size:24 final size:24
Alignment explanation
Indices: 33339337--33339385 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
33339327 CAAAAACGAA
33339337 TGATACGAGCTTACAACAAAAAGG
1 TGATACGAGCTTACAACAAAAAGG
33339361 TGATACGAGCTTACAACAAAAAGG
1 TGATACGAGCTTACAACAAAAAGG
33339385 T
1 T
33339386 TCGTCCTAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.45, C:0.16, G:0.20, T:0.18
Consensus pattern (24 bp):
TGATACGAGCTTACAACAAAAAGG
Found at i:33340505 original size:43 final size:42
Alignment explanation
Indices: 33340451--33340688 Score: 188
Period size: 43 Copynumber: 5.5 Consensus size: 42
33340441 GGCCTTAAAT
*
33340451 CCCTAAGCAGTAGGGTAACACGCTGAATTTACAGATCTTAACC
1 CCCTAAGCAGTAGGGAAACA-GCTGAATTTACAGATCTTAACC
* * * ** ** *
33340494 CCCTAAGCAGTAGGGAAACAGATCGAGGTTGATGGGCCTTAAAC
1 CCCTAAGCAGTAGGGAAACAGCT-GA-ATTTACAGATCTTAACC
* * **
33340538 CCCTAAACAGTAGGGTAATGGCTGAATTTACAAGATCTTAACC
1 CCCTAAGCAGTAGGGAAACAGCTGAATTTAC-AGATCTTAACC
* * * ** ** *
33340581 CCCTAAGCAGTAGGGAAACAGATCGAGGTTGATGGGCCTTAAAC
1 CCCTAAGCAGTAGGGAAACAGCT-GA-ATTTACAGATCTTAACC
* * **
33340625 CCCTAAACAGTAGGGTAATGGCTGAATTTACAAGATCTTAACC
1 CCCTAAGCAGTAGGGAAACAGCTGAATTTAC-AGATCTTAACC
33340668 CCCTAAGCAGTAGGGAAACAG
1 CCCTAAGCAGTAGGGAAACAG
33340689 ATCGAAGGAG
Statistics
Matches: 140, Mismatches: 49, Indels: 12
0.70 0.24 0.06
Matches are distributed among these distances:
42 8 0.06
43 74 0.53
44 55 0.39
45 3 0.02
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.21
Consensus pattern (42 bp):
CCCTAAGCAGTAGGGAAACAGCTGAATTTACAGATCTTAACC
Found at i:33340549 original size:44 final size:44
Alignment explanation
Indices: 33340487--33340639 Score: 157
Period size: 44 Copynumber: 3.5 Consensus size: 44
33340477 ATTTACAGAT
* *
33340487 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAGGTTGATGGGC
1 CTTAAACCCCTAAACAGTAGGGAAACAGATCGAGGTTGATGGGC
* ** * * * ** **
33340531 CTTAAACCCCTAAACAGTAGGGTAATGGCT-GA-ATTTACAAGAT
1 CTTAAACCCCTAAACAGTAGGGAAACAGATCGAGGTTGA-TGGGC
* *
33340574 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAGGTTGATGGGC
1 CTTAAACCCCTAAACAGTAGGGAAACAGATCGAGGTTGATGGGC
33340618 CTTAAACCCCTAAACAGTAGGG
1 CTTAAACCCCTAAACAGTAGGG
33340640 TAATGGCTGA
Statistics
Matches: 80, Mismatches: 26, Indels: 6
0.71 0.23 0.05
Matches are distributed among these distances:
42 3 0.04
43 27 0.34
44 47 0.59
45 3 0.04
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.20
Consensus pattern (44 bp):
CTTAAACCCCTAAACAGTAGGGAAACAGATCGAGGTTGATGGGC
Found at i:33340586 original size:87 final size:87
Alignment explanation
Indices: 33340440--33340729 Score: 476
Period size: 87 Copynumber: 3.3 Consensus size: 87
33340430 GAACTCACAA
* * **
33340440 GGGCCTTAAATCCCTAAGCAGTAGGGTAACACGCTGAATTTAC-AGATCTTAACCCCCTAAGCAG
1 GGGCCTTAAACCCCTAAACAGTAGGGTAA-TGGCTGAATTTACAAGATCTTAACCCCCTAAGCAG
33340504 TAGGGAAACAGATCGAGGTTGAT
65 TAGGGAAACAGATCGAGGTTGAT
33340527 GGGCCTTAAACCCCTAAACAGTAGGGTAATGGCTGAATTTACAAGATCTTAACCCCCTAAGCAGT
1 GGGCCTTAAACCCCTAAACAGTAGGGTAATGGCTGAATTTACAAGATCTTAACCCCCTAAGCAGT
33340592 AGGGAAACAGATCGAGGTTGAT
66 AGGGAAACAGATCGAGGTTGAT
33340614 GGGCCTTAAACCCCTAAACAGTAGGGTAATGGCTGAATTTACAAGATCTTAACCCCCTAAGCAGT
1 GGGCCTTAAACCCCTAAACAGTAGGGTAATGGCTGAATTTACAAGATCTTAACCCCCTAAGCAGT
*
33340679 AGGGAAACAGATCGAAGG-AGAT
66 AGGGAAACAGATCG-AGGTTGAT
* **
33340701 GGCCCTTAAACCCCTATGCAGTAGGGTAA
1 GGGCCTTAAACCCCTAAACAGTAGGGTAA
33340730 CAAGCTGAAA
Statistics
Matches: 193, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
86 11 0.06
87 179 0.93
88 3 0.02
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.21
Consensus pattern (87 bp):
GGGCCTTAAACCCCTAAACAGTAGGGTAATGGCTGAATTTACAAGATCTTAACCCCCTAAGCAGT
AGGGAAACAGATCGAGGTTGAT
Found at i:33340716 original size:44 final size:44
Alignment explanation
Indices: 33340487--33340731 Score: 142
Period size: 44 Copynumber: 5.6 Consensus size: 44
33340477 ATTTACAGAT
* * *
33340487 CTTAACCCCCTAAGCAGTAGGGAAACAGATCG-AGGTTGATGGGC
1 CTTAAACCCCTAAGCAGTAGGGAAACAGATCGAAGG-AGATGGAC
* * ** * ** * * *
33340531 CTTAAACCCCTAAACAGTAGGGTAATGGCT-GAATTTACA-AGAT
1 CTTAAACCCCTAAGCAGTAGGGAAACAGATCGAA-GGAGATGGAC
* * *
33340574 CTTAACCCCCTAAGCAGTAGGGAAACAGATCG-AGGTTGATGGGC
1 CTTAAACCCCTAAGCAGTAGGGAAACAGATCGAAGG-AGATGGAC
* * ** * ** * * *
33340618 CTTAAACCCCTAAACAGTAGGGTAATGGCT-GAATTTACA-AGAT
1 CTTAAACCCCTAAGCAGTAGGGAAACAGATCGAA-GGAGATGGAC
* *
33340661 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGAGATGGCC
1 CTTAAACCCCTAAGCAGTAGGGAAACAGATCGAAGGAGATGGAC
* *
33340705 CTTAAACCCCTATGCAGTAGGGTAACA
1 CTTAAACCCCTAAGCAGTAGGGAAACA
33340732 AGCTGAAAAT
Statistics
Matches: 138, Mismatches: 54, Indels: 18
0.66 0.26 0.09
Matches are distributed among these distances:
43 56 0.41
44 82 0.59
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.20
Consensus pattern (44 bp):
CTTAAACCCCTAAGCAGTAGGGAAACAGATCGAAGGAGATGGAC
Found at i:33340807 original size:88 final size:88
Alignment explanation
Indices: 33340704--33340884 Score: 258
Period size: 88 Copynumber: 2.1 Consensus size: 88
33340694 AGGAGATGGC
* * *
33340704 CCTTAAACCCCTATGCAGTAGGGTAACAA-GCT-GAAAATTATAAATCTTTTCTCCCCGAAATTG
1 CCTTAAACCCCTATGCAGTAAGGTAA-AAGGCTAG-AAATTACAAATCTTTTCTCCCCAAAATTG
*
33340767 CAGTGGAGCAAATCGAAGCCATTAA
64 CAGTGGAGCAAATCGAACCCATTAA
* **
33340792 CCTTAAACCCTTATGCAGTAAGGTAAAAGGCTAGAAATTACAAATCTTTTCTCCTTAAAATTGCA
1 CCTTAAACCCCTATGCAGTAAGGTAAAAGGCTAGAAATTACAAATCTTTTCTCCCCAAAATTGCA
*
33340857 GTGGAGCAGATCGAACCCATTAA
66 GTGGAGCAAATCGAACCCATTAA
33340880 CCTTA
1 CCTTA
33340885 TCTCCTTGAA
Statistics
Matches: 83, Mismatches: 8, Indels: 4
0.87 0.08 0.04
Matches are distributed among these distances:
87 2 0.02
88 80 0.96
89 1 0.01
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (88 bp):
CCTTAAACCCCTATGCAGTAAGGTAAAAGGCTAGAAATTACAAATCTTTTCTCCCCAAAATTGCA
GTGGAGCAAATCGAACCCATTAA
Found at i:33342645 original size:21 final size:19
Alignment explanation
Indices: 33342620--33342748 Score: 63
Period size: 21 Copynumber: 6.8 Consensus size: 19
33342610 CTTTTTAAAC
33342620 ATTATATATATATTATGTAAT
1 ATTATATATATATT-T-TAAT
*
33342641 ATTATGTATATATTTTAATAT
1 ATTATATATATATTTT-A-AT
* * *
33342662 ATTATGTGTATATTTT-GT
1 ATTATATATATATTTTAAT
* * *
33342680 TTTGTATAT-TA-TGTATAT
1 ATTATATATATATTTTA-AT
* *
33342698 ATTATGTATATGCTTTTAAT
1 ATTATATATAT-ATTTTAAT
*
33342718 ATTAT-TATATA-TTTATT
1 ATTATATATATATTTTAAT
*
33342735 TTTA-ATATATATTT
1 ATTATATATATATTT
33342749 ATATGATATT
Statistics
Matches: 82, Mismatches: 17, Indels: 21
0.68 0.14 0.17
Matches are distributed among these distances:
16 2 0.02
17 16 0.20
18 15 0.18
19 7 0.09
20 9 0.11
21 33 0.40
ACGTcount: A:0.33, C:0.01, G:0.07, T:0.59
Consensus pattern (19 bp):
ATTATATATATATTTTAAT
Found at i:33342653 original size:11 final size:11
Alignment explanation
Indices: 33342620--33342708 Score: 85
Period size: 11 Copynumber: 8.0 Consensus size: 11
33342610 CTTTTTAAAC
*
33342620 ATTATATATAT
1 ATTATGTATAT
33342631 ATTATGTA-AT
1 ATTATGTATAT
33342641 ATTATGTATAT
1 ATTATGTATAT
33342652 ATT-T-TAATAT
1 ATTATGT-ATAT
*
33342662 ATTATGTGTAT
1 ATTATGTATAT
* *
33342673 ATTTTGTTTTGTAT
1 ATTATG---TATAT
33342687 ATTATGTATAT
1 ATTATGTATAT
33342698 ATTATGTATAT
1 ATTATGTATAT
33342709 GCTTTTAATA
Statistics
Matches: 66, Mismatches: 5, Indels: 14
0.78 0.06 0.16
Matches are distributed among these distances:
9 1 0.02
10 18 0.27
11 36 0.55
12 1 0.02
14 10 0.15
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (11 bp):
ATTATGTATAT
Found at i:33344653 original size:49 final size:48
Alignment explanation
Indices: 33344522--33344675 Score: 236
Period size: 48 Copynumber: 3.2 Consensus size: 48
33344512 GCATCAGTGA
* * *
33344522 GATATGTGATTCGTGTAAAACCATAGTTGGGCTATGGCATCAATATGT
1 GATATGTGATTCGTGTAAGACCATAGCTGGGCTATGGCATCGATATGT
* * *
33344570 GATATGTGATCCGTGTAAGACCATAGCTAGGCTATGGCATTGATATGT
1 GATATGTGATTCGTGTAAGACCATAGCTGGGCTATGGCATCGATATGT
33344618 GATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGATATGT
1 GATATGTGATT-CGTGTAAGACCATAGCTGGGCTATGGCATCGATATGT
33344667 GAATATGTG
1 G-ATATGTG
33344676 TAAGACCATA
Statistics
Matches: 95, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
48 52 0.55
49 36 0.38
50 7 0.07
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.32
Consensus pattern (48 bp):
GATATGTGATTCGTGTAAGACCATAGCTGGGCTATGGCATCGATATGT
Found at i:33346805 original size:18 final size:18
Alignment explanation
Indices: 33346784--33347066 Score: 167
Period size: 18 Copynumber: 15.3 Consensus size: 18
33346774 GAACAATTAT
33346784 TTATTCAGTAACAGTCAG
1 TTATTCAGTAACAGTCAG
* * *
33346802 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAGTCAG
* * **
33346820 TTATTCAATAATAACCAG
1 TTATTCAGTAACAGTCAG
* *
33346838 TTATTCAGTATCGATCACTTTATCGG
1 TTATTCAGTA---A-CA----GTCAG
* *
33346864 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAG
*
33346882 TTATTCAGTAA-AATCAG
1 TTATTCAGTAACAGTCAG
* * *
33346899 ATATTCAGTAACAATTAAG
1 TTATTCAGTAAC-AGTCAG
*
33346918 TTATTCAGTAACAGTCAT
1 TTATTCAGTAACAGTCAG
* *
33346936 TTATTCAGTGACAATCAG
1 TTATTCAGTAACAGTCAG
* *
33346954 TTATTCAGTAA-TGATCAA
1 TTATTCAGTAACAG-TCAG
* *
33346972 TTATTCAGTAATATTCAG
1 TTATTCAGTAACAGTCAG
33346990 TTATTCAGTAACAGTCTA-
1 TTATTCAGTAACAGTC-AG
* * *
33347008 ATATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAG
* * * *
33347026 TTATCCGGTAACTGTCAA
1 TTATTCAGTAACAGTCAG
* *
33347044 TTATTCAGTAATAATCAG
1 TTATTCAGTAACAGTCAG
33347062 TTATT
1 TTATT
33347067 TTATACTTTT
Statistics
Matches: 202, Mismatches: 49, Indels: 28
0.72 0.18 0.10
Matches are distributed among these distances:
17 15 0.07
18 154 0.76
19 16 0.08
21 1 0.00
22 3 0.01
23 1 0.00
26 12 0.06
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAG
Found at i:33346824 original size:36 final size:36
Alignment explanation
Indices: 33346771--33347066 Score: 204
Period size: 36 Copynumber: 8.0 Consensus size: 36
33346761 TCATTAACAC
* * *
33346771 TCAG-AACAATTATTTATTCAGTAACAGTCAGTTAT
1 TCAGTAACAATCAATTATTCAGTAACAATCAGTTAT
* * * *
33346806 TCGGTAACAATCAATTATTCAATAATAACCAGTTAT
1 TCAGTAACAATCAATTATTCAGTAACAATCAGTTAT
** * * *
33346842 TCAGTATCGATCACTTTATCGGTTATCCAGTAACAGTCAATTAT
1 TCAGTA---A-CA----ATCAATTATTCAGTAACAATCAGTTAT
*
33346886 TCAGTAA-AATCAGA-TATTCAGTAACAATTAAGTTAT
1 TCAGTAACAATCA-ATTATTCAGTAACAA-TCAGTTAT
* * *
33346922 TCAGTAACAGTCATTTATTCAGTGACAATCAGTTAT
1 TCAGTAACAATCAATTATTCAGTAACAATCAGTTAT
** * *
33346958 TCAGTAATGATCAATTATTCAGTAATATTCAGTTAT
1 TCAGTAACAATCAATTATTCAGTAACAATCAGTTAT
* * * *
33346994 TCAGTAACAGTCTAA-TATCCAGTAACAGTCAATTAT
1 TCAGTAACAATC-AATTATTCAGTAACAATCAGTTAT
* * ** *
33347030 CCGGTAACTGTCAATTATTCAGTAATAATCAGTTAT
1 TCAGTAACAATCAATTATTCAGTAACAATCAGTTAT
33347066 T
1 T
33347067 TTATACTTTT
Statistics
Matches: 198, Mismatches: 48, Indels: 29
0.72 0.17 0.11
Matches are distributed among these distances:
35 19 0.10
36 131 0.66
37 18 0.09
39 2 0.01
40 2 0.01
41 1 0.01
44 25 0.13
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (36 bp):
TCAGTAACAATCAATTATTCAGTAACAATCAGTTAT
Found at i:33346928 original size:54 final size:54
Alignment explanation
Indices: 33346864--33347066 Score: 212
Period size: 54 Copynumber: 3.8 Consensus size: 54
33346854 ACTTTATCGG
*
33346864 TTATCCAGTAACAGTCAATTATTCAGTAA-AATCAGATATTCAGTAACAATTAA
1 TTATCCAGTAACAGTCAATTATTCAGTAACAATCAGATATTCAGTAACAATCAA
* * * * **
33346917 GTTATTCAGTAACAGTCATTTATTCAGTGACAATCAGTTATTCAGTAATGATCAA
1 -TTATCCAGTAACAGTCAATTATTCAGTAACAATCAGATATTCAGTAACAATCAA
* * * * * * *
33346972 TTATTCAGTAATATTCAGTTATTCAGTAACAGTCTA-ATATCCAGTAACAGTCAA
1 TTATCCAGTAACAGTCAATTATTCAGTAACAATC-AGATATTCAGTAACAATCAA
* * * *
33347026 TTATCCGGTAACTGTCAATTATTCAGTAATAATCAGTTATT
1 TTATCCAGTAACAGTCAATTATTCAGTAACAATCAGATATT
33347067 TTATACTTTT
Statistics
Matches: 119, Mismatches: 27, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
53 1 0.01
54 97 0.82
55 21 0.18
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36
Consensus pattern (54 bp):
TTATCCAGTAACAGTCAATTATTCAGTAACAATCAGATATTCAGTAACAATCAA
Found at i:33346999 original size:72 final size:72
Alignment explanation
Indices: 33346864--33347066 Score: 243
Period size: 72 Copynumber: 2.8 Consensus size: 72
33346854 ACTTTATCGG
* * *
33346864 TTATCCAGTAACAGTCAATTATTCAGTAA-AATCAGA-TATTCAGTAACAATTAAGTTATTCAGT
1 TTATCCAGTAACAGTCAATTATTCAGTAATGATCA-ATTATTCAGTAA-TATTCAGTTATTCAGT
33346927 AACAGTC-A
64 AACAGTCTA
* * * *
33346935 TTTATTCAGTGACAATCAGTTATTCAGTAATGATCAATTATTCAGTAATATTCAGTTATTCAGTA
1 -TTATCCAGTAACAGTCAATTATTCAGTAATGATCAATTATTCAGTAATATTCAGTTATTCAGTA
33347000 ACAGTCTA
65 ACAGTCTA
* * * *
33347008 ATATCCAGTAACAGTCAATTATCCGGTAACTG-TCAATTATTCAGTAATAATCAGTTATT
1 TTATCCAGTAACAGTCAATTATTCAGTAA-TGATCAATTATTCAGTAATATTCAGTTATT
33347067 TTATACTTTT
Statistics
Matches: 112, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
72 95 0.85
73 17 0.15
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36
Consensus pattern (72 bp):
TTATCCAGTAACAGTCAATTATTCAGTAATGATCAATTATTCAGTAATATTCAGTTATTCAGTAA
CAGTCTA
Found at i:33348044 original size:59 final size:59
Alignment explanation
Indices: 33347977--33348094 Score: 209
Period size: 59 Copynumber: 2.0 Consensus size: 59
33347967 TATCTTAAGC
*
33347977 TACAGAACTCGAAATTAAGATCCGCTAATTTTCCCTAAAACTAGACTTACTTATCTTAT
1 TACAGAACTCGAAATTAAGATACGCTAATTTTCCCTAAAACTAGACTTACTTATCTTAT
* *
33348036 TACAGAACTCGAAATTAAGATACGCTAATTTTCCCTGAAACTAGATTTACTTATCTTAT
1 TACAGAACTCGAAATTAAGATACGCTAATTTTCCCTAAAACTAGACTTACTTATCTTAT
33348095 GACCATAAAA
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 56 1.00
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (59 bp):
TACAGAACTCGAAATTAAGATACGCTAATTTTCCCTAAAACTAGACTTACTTATCTTAT
Found at i:33349617 original size:51 final size:51
Alignment explanation
Indices: 33349549--33349668 Score: 143
Period size: 51 Copynumber: 2.4 Consensus size: 51
33349539 TTAGGCTGTT
* * ** * *
33349549 ACAGGAACAGTAGCAGTATTCAACACCCAAAGTG-CTGAATCGATAACGGTA
1 ACAGTAACAGTAACAGTATTCAACACAAAAAG-GACCGAATCGATAACAGTA
* *
33349600 ACAGTAACAGTAACAGTATTCGACACAAAAAGGACCGAATCGGTAACAGTA
1 ACAGTAACAGTAACAGTATTCAACACAAAAAGGACCGAATCGATAACAGTA
*
33349651 ACGGTAACAGTAACAGTA
1 ACAGTAACAGTAACAGTA
33349669 GTCGGCACAT
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
50 1 0.02
51 58 0.98
ACGTcount: A:0.42, C:0.20, G:0.21, T:0.17
Consensus pattern (51 bp):
ACAGTAACAGTAACAGTATTCAACACAAAAAGGACCGAATCGATAACAGTA
Found at i:33349657 original size:12 final size:12
Alignment explanation
Indices: 33349640--33349664 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
33349630 AGGACCGAAT
33349640 CGGTAACAGTAA
1 CGGTAACAGTAA
33349652 CGGTAACAGTAA
1 CGGTAACAGTAA
33349664 C
1 C
33349665 AGTAGTCGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:33349813 original size:39 final size:39
Alignment explanation
Indices: 33349757--33349835 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
33349747 GAGTAGCCCG
33349757 ACTAGTTAATAGAGTATTTAATTCACTTTTCAGTTTTCA
1 ACTAGTTAATAGAGTATTTAATTCACTTTTCAGTTTTCA
*
33349796 ACTAGTTAATAGGGTATTTAATTCACTTTTCAGTTTTCA
1 ACTAGTTAATAGAGTATTTAATTCACTTTTCAGTTTTCA
33349835 A
1 A
33349836 TTAATTCATA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.30, C:0.13, G:0.11, T:0.46
Consensus pattern (39 bp):
ACTAGTTAATAGAGTATTTAATTCACTTTTCAGTTTTCA
Found at i:33364330 original size:47 final size:47
Alignment explanation
Indices: 33364276--33364371 Score: 183
Period size: 47 Copynumber: 2.0 Consensus size: 47
33364266 AGTTACCTCA
*
33364276 TTTTGTTCTAACCTTGACAAATGATTGGCTACATCAGCTACTTGATT
1 TTTTGTTCTAACCTTGACAAATGATTGGCTACATCAACTACTTGATT
33364323 TTTTGTTCTAACCTTGACAAATGATTGGCTACATCAACTACTTGATT
1 TTTTGTTCTAACCTTGACAAATGATTGGCTACATCAACTACTTGATT
33364370 TT
1 TT
33364372 CAACACCTTT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.26, C:0.19, G:0.14, T:0.42
Consensus pattern (47 bp):
TTTTGTTCTAACCTTGACAAATGATTGGCTACATCAACTACTTGATT
Found at i:33368454 original size:79 final size:82
Alignment explanation
Indices: 33368343--33368527 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
33368333 GCTACTCGTT
* *
33368343 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
33368406 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
33368423 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
33368486 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
33368503 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
33368528 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:33368527 original size:40 final size:40
Alignment explanation
Indices: 33368324--33368527 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
33368314 CGGAATTTAA
** *
33368324 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
33368364 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
33368404 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
33368443 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
33368483 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
33368523 CCGGA
1 CCGGA
33368528 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:33382770 original size:39 final size:39
Alignment explanation
Indices: 33382722--33382799 Score: 120
Period size: 39 Copynumber: 2.0 Consensus size: 39
33382712 GCTCGTTCTG
* *
33382722 TTTTGTCATTAACAATAGGATAATTATTATGTACCCCTA
1 TTTTATCATTAACAATAGGATAATTATTATATACCCCTA
* *
33382761 TTTTATCATTACCAATAGGATAATTATTCTATACCCCTA
1 TTTTATCATTAACAATAGGATAATTATTATATACCCCTA
33382800 CAAAACCTCA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.41
Consensus pattern (39 bp):
TTTTATCATTAACAATAGGATAATTATTATATACCCCTA
Found at i:33391047 original size:15 final size:15
Alignment explanation
Indices: 33391027--33391061 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
33391017 ATAAAAAAAT
*
33391027 TATCATTTGTATTTA
1 TATCATTTATATTTA
33391042 TATCATTTATATTTA
1 TATCATTTATATTTA
*
33391057 CATCA
1 TATCA
33391062 CAAAATGTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.31, C:0.11, G:0.03, T:0.54
Consensus pattern (15 bp):
TATCATTTATATTTA
Found at i:33391265 original size:24 final size:24
Alignment explanation
Indices: 33391205--33391265 Score: 86
Period size: 24 Copynumber: 2.5 Consensus size: 24
33391195 GTCCTCATCT
*
33391205 TCTTCATCTTCACCTCAACCCTCA
1 TCTTCATCTTCATCTCAACCCTCA
* * *
33391229 TCCTCATCTTCATCTCGACCCTCG
1 TCTTCATCTTCATCTCAACCCTCA
33391253 TCTTCATCTTCAT
1 TCTTCATCTTCAT
33391266 TTCTATTCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.16, C:0.43, G:0.03, T:0.38
Consensus pattern (24 bp):
TCTTCATCTTCATCTCAACCCTCA
Found at i:33393472 original size:9 final size:9
Alignment explanation
Indices: 33393448--33393495 Score: 53
Period size: 9 Copynumber: 5.3 Consensus size: 9
33393438 CAAACAAAAC
*
33393448 TTGAGAAAA
1 TTGAGAGAA
33393457 TTGAGAGAA
1 TTGAGAGAA
*
33393466 TTGAGAG-T
1 TTGAGAGAA
33393474 TTAGAGAGAA
1 TT-GAGAGAA
*
33393484 TAGAGAGAA
1 TTGAGAGAA
33393493 TTG
1 TTG
33393496 CCATTCATCT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
8 2 0.06
9 29 0.91
10 1 0.03
ACGTcount: A:0.44, C:0.00, G:0.31, T:0.25
Consensus pattern (9 bp):
TTGAGAGAA
Found at i:33395495 original size:18 final size:18
Alignment explanation
Indices: 33395454--33395512 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
33395444 TCTTTATCGT
* * *
33395454 TCAGTACTAGTCAGTCAA
1 TCAGTAATAATCAGTTAA
33395472 -CAGTAATAATCAGTTAA
1 TCAGTAATAATCAGTTAA
* * *
33395489 TCAGTAATATTCATTTAT
1 TCAGTAATAATCAGTTAA
33395507 TCAGTA
1 TCAGTA
33395513 TCAGTCGTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
17 14 0.41
18 20 0.59
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36
Consensus pattern (18 bp):
TCAGTAATAATCAGTTAA
Found at i:33395523 original size:18 final size:18
Alignment explanation
Indices: 33395502--33395536 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
33395492 GTAATATTCA
*
33395502 TTTATTCAGTATCAGTCG
1 TTTATTCAGTAACAGTCG
*
33395520 TTTATTCTGTAACAGTC
1 TTTATTCAGTAACAGTC
33395537 AATTATTTAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.17, G:0.14, T:0.46
Consensus pattern (18 bp):
TTTATTCAGTAACAGTCG
Found at i:33397954 original size:18 final size:18
Alignment explanation
Indices: 33397913--33397971 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
33397903 TCTTTATCGT
* * *
33397913 TCAGTACTAGTCAGTCAA
1 TCAGTAATAATCAGTTAA
33397931 -CAGTAATAATCAGTTAA
1 TCAGTAATAATCAGTTAA
* * *
33397948 TCAGTAATATTCATTTAT
1 TCAGTAATAATCAGTTAA
33397966 TCAGTA
1 TCAGTA
33397972 TCAGTCGTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
17 14 0.41
18 20 0.59
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36
Consensus pattern (18 bp):
TCAGTAATAATCAGTTAA
Found at i:33397982 original size:18 final size:18
Alignment explanation
Indices: 33397961--33397995 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
33397951 GTAATATTCA
*
33397961 TTTATTCAGTATCAGTCG
1 TTTATTCAGTAACAGTCG
*
33397979 TTTATTCTGTAACAGTC
1 TTTATTCAGTAACAGTC
33397996 AATTATTTAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.17, G:0.14, T:0.46
Consensus pattern (18 bp):
TTTATTCAGTAACAGTCG
Found at i:33399231 original size:19 final size:19
Alignment explanation
Indices: 33399190--33399230 Score: 66
Period size: 20 Copynumber: 2.2 Consensus size: 19
33399180 AACCCTTCAA
33399190 TTTT-TCCTTTCTTCTTTC
1 TTTTCTCCTTTCTTCTTTC
33399208 TTTTCTCCTTTCTTTCTTTC
1 TTTTCTCCTTTC-TTCTTTC
33399228 TTT
1 TTT
33399231 CCATGCTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 4 0.19
19 7 0.33
20 10 0.48
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (19 bp):
TTTTCTCCTTTCTTCTTTC
Found at i:33399271 original size:17 final size:15
Alignment explanation
Indices: 33399201--33399282 Score: 55
Period size: 16 Copynumber: 5.3 Consensus size: 15
33399191 TTTTCCTTTC
33399201 TTCT-TTCTTTTCTCCT
1 TTCTATTCTTTTCT--T
33399217 TTCT-TTC-TTTC-T
1 TTCTATTCTTTTCTT
* *
33399229 TTCCATGCTTTTCGTT
1 TTCTATTCTTTTC-TT
33399245 TTGCCTATTCTGTTTCTAT
1 TT--CTATTCT-TTTCT-T
33399264 TTCTATTCTTTTCTT
1 TTCTATTCTTTTCTT
33399279 TTCT
1 TTCT
33399283 TATTTCATTA
Statistics
Matches: 54, Mismatches: 4, Indels: 17
0.72 0.05 0.23
Matches are distributed among these distances:
12 4 0.07
13 2 0.04
14 4 0.07
15 9 0.17
16 15 0.28
17 7 0.13
18 6 0.11
19 7 0.13
ACGTcount: A:0.05, C:0.24, G:0.05, T:0.66
Consensus pattern (15 bp):
TTCTATTCTTTTCTT
Found at i:33407112 original size:46 final size:46
Alignment explanation
Indices: 33407060--33407232 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
33407050 TTGGGCATCT
33407060 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC
* * *
33407106 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G--TCC
* * * * **
33407153 GAGCTTGTTGAGTTGAGTCTGAGTTCACTTATGGAGGCGAACACCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC
* *
33407199 GAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
33407233 GCGAGTTACA
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 61 0.58
47 26 0.25
48 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC
Found at i:33411211 original size:19 final size:18
Alignment explanation
Indices: 33411140--33411209 Score: 56
Period size: 19 Copynumber: 3.8 Consensus size: 18
33411130 TTTACTTATT
*
33411140 TATTTCATTCTTATTAGTA
1 TATTTCATTATTATT-GTA
33411159 TTATTTC-TTATTATTGT-
1 -TATTTCATTATTATTGTA
*
33411176 TATTT-ATTTATTATTTTA
1 TATTTCA-TTATTATTGTA
*
33411194 CTATTTCATTCTTATT
1 -TATTTCATTATTATT
33411210 TTTTTATTCT
Statistics
Matches: 42, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
16 5 0.12
17 9 0.21
18 2 0.05
19 19 0.45
20 7 0.17
ACGTcount: A:0.23, C:0.09, G:0.03, T:0.66
Consensus pattern (18 bp):
TATTTCATTATTATTGTA
Found at i:33411217 original size:19 final size:20
Alignment explanation
Indices: 33411138--33411217 Score: 59
Period size: 16 Copynumber: 4.3 Consensus size: 20
33411128 TTTTTACTTA
*
33411138 TTTATTTCATTCTTATTAGT
1 TTTATTTCATTCTTATTATT
*
33411158 ATTA--T--TTCTTATTATT
1 TTTATTTCATTCTTATTATT
*
33411174 GTTATTT-A-T-TTATTATT
1 TTTATTTCATTCTTATTATT
33411191 TTACTATTTCATTCTTATT-TT
1 TT--TATTTCATTCTTATTATT
33411212 TTTATT
1 TTTATT
33411218 CTATTTTAGT
Statistics
Matches: 48, Mismatches: 4, Indels: 17
0.70 0.06 0.25
Matches are distributed among these distances:
16 13 0.27
17 9 0.19
18 3 0.06
19 9 0.19
20 4 0.08
21 5 0.10
22 5 0.10
ACGTcount: A:0.21, C:0.07, G:0.03, T:0.69
Consensus pattern (20 bp):
TTTATTTCATTCTTATTATT
Found at i:33414041 original size:10 final size:10
Alignment explanation
Indices: 33414026--33414050 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
33414016 TATTTATATT
33414026 CATATAGTTA
1 CATATAGTTA
33414036 CATATAGTTA
1 CATATAGTTA
33414046 CATAT
1 CATAT
33414051 TGTTCTAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (10 bp):
CATATAGTTA
Found at i:33416816 original size:3 final size:3
Alignment explanation
Indices: 33416808--33416855 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
33416798 GAGCACACTC
33416808 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
33416856 GATGAATGTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:33417236 original size:19 final size:18
Alignment explanation
Indices: 33417194--33417266 Score: 56
Period size: 18 Copynumber: 3.9 Consensus size: 18
33417184 AGTAAATAAC
*
33417194 ATTTTTTTTATTTTGATA
1 ATTTTTTATATTTTGATA
* *
33417212 ACTTTTTATATTTTTATTA
1 ATTTTTTATATTTTGA-TA
* * * *
33417231 ATTTTTTAAAATTTCAAA
1 ATTTTTTATATTTTGATA
33417249 ACTTTTTTTATATTTTGA
1 A--TTTTTTATATTTTGA
33417267 ATTTCAAAGT
Statistics
Matches: 41, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
18 15 0.37
19 14 0.34
20 12 0.29
ACGTcount: A:0.29, C:0.04, G:0.03, T:0.64
Consensus pattern (18 bp):
ATTTTTTATATTTTGATA
Found at i:33423094 original size:12 final size:12
Alignment explanation
Indices: 33423079--33423126 Score: 53
Period size: 12 Copynumber: 4.0 Consensus size: 12
33423069 TTGAAGAAAG
33423079 AATTATTAAGTA
1 AATTATTAAGTA
*
33423091 AATTATTATA-TG
1 AATTATTA-AGTA
*
33423103 AATTATTAAATA
1 AATTATTAAGTA
*
33423115 AGTTATTAAGTA
1 AATTATTAAGTA
33423127 TAGTAGAAGG
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
11 1 0.03
12 28 0.93
13 1 0.03
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (12 bp):
AATTATTAAGTA
Found at i:33429778 original size:29 final size:29
Alignment explanation
Indices: 33429736--33429795 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
33429726 TATCAAAGTG
33429736 CTTGAGATGTACCTTACTTGCAGCATTTA
1 CTTGAGATGTACCTTACTTGCAGCATTTA
*
33429765 CTTGAGATGTACCTTACTTGTAGCATTTA
1 CTTGAGATGTACCTTACTTGCAGCATTTA
33429794 CT
1 CT
33429796 CTGGTCAAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (29 bp):
CTTGAGATGTACCTTACTTGCAGCATTTA
Found at i:33429783 original size:16 final size:16
Alignment explanation
Indices: 33429736--33429784 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
33429726 TATCAAAGTG
33429736 CTTGAGATGTACCTTA
1 CTTGAGATGTACCTTA
* * *
33429752 CTTG-CA-GCA-TTTA
1 CTTGAGATGTACCTTA
33429765 CTTGAGATGTACCTTA
1 CTTGAGATGTACCTTA
33429781 CTTG
1 CTTG
33429785 TAGCATTTAC
Statistics
Matches: 24, Mismatches: 6, Indels: 6
0.67 0.17 0.17
Matches are distributed among these distances:
13 7 0.29
14 3 0.12
15 3 0.12
16 11 0.46
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.39
Consensus pattern (16 bp):
CTTGAGATGTACCTTA
Found at i:33431012 original size:55 final size:55
Alignment explanation
Indices: 33430939--33431068 Score: 208
Period size: 55 Copynumber: 2.4 Consensus size: 55
33430929 GTGTCCTTAG
* *
33430939 CCCATGTGCAACATTGACTTTAAAACACGACCATGACACACGCCCGTGTGGCCTA
1 CCCATGTACAACACTGACTTTAAAACACGACCATGACACACGCCCGTGTGGCCTA
*
33430994 CCCATGTACAACACTGACTTTAAAACACGGCCATGACACACGCCCGTGTGGCCTA
1 CCCATGTACAACACTGACTTTAAAACACGACCATGACACACGCCCGTGTGGCCTA
*
33431049 CCCGTGTACTAA-ACTGACTT
1 CCCATGTAC-AACACTGACTT
33431069 AAAGTTTTCA
Statistics
Matches: 70, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
55 68 0.97
56 2 0.03
ACGTcount: A:0.28, C:0.33, G:0.18, T:0.21
Consensus pattern (55 bp):
CCCATGTACAACACTGACTTTAAAACACGACCATGACACACGCCCGTGTGGCCTA
Found at i:33435003 original size:6 final size:6
Alignment explanation
Indices: 33434992--33435023 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
33434982 TGCACTAAAT
*
33434992 AATGCC AATGCC AATGCC AATGCC AATACC AA
1 AATGCC AATGCC AATGCC AATGCC AATGCC AA
33435024 CTAAGCTAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.41, C:0.31, G:0.12, T:0.16
Consensus pattern (6 bp):
AATGCC
Found at i:33435908 original size:832 final size:832
Alignment explanation
Indices: 33434305--33435969 Score: 3222
Period size: 832 Copynumber: 2.0 Consensus size: 832
33434295 TTCGTGTAGC
33434305 CTTAGGCGATCATTTAGTTTCAAACATGCCTAAGTCAACCTAACCACCAAACAATTGAGGATTTA
1 CTTAGGCGATCATTTAGTTTCAAACATGCCTAAGTCAACCTAACCACCAAACAATTGAGGATTTA
33434370 CAAAGAATTCCACTAAAGCACCAAGTTATATAACGGAAGCAACACAAATCAAAAGAAGGCTAAAT
66 CAAAGAATTCCACTAAAGCACCAAGTTATATAACGGAAGCAACACAAATCAAAAGAAGGCTAAAT
*
33434435 GAACAGAAACAGAAAATAATGCACGAGAGGTGTTTGAATAAATGCTCTCAATATCTTCTTATTCA
131 GAACAAAAACAGAAAATAATGCACGAGAGGTGTTTGAATAAATGCTCTCAATATCTTCTTATTCA
*
33434500 TAAAGAATAATGAAACAATGGATGATTTACAAATGATGGGGAAGCTCTCTATTTATAGTTGAGCT
196 CAAAGAATAATGAAACAATGGATGATTTACAAATGATGGGGAAGCTCTCTATTTATAGTTGAGCT
* *
33434565 CCCCCAAAATCGACGATCTATATCAAGTTACATCGACGGATGATATTAAGCCTATCCCTAAAATT
261 CCCCCAAAATCGACGATCTATATCAAGTTAAATCGACGGACGATATTAAGCCTATCCCTAAAATT
33434630 AAGGGATTTAAAAGATTTACAATATCAAATCACATCTAATCTTACAAGATATGATTCCCCTCAAT
326 AAGGGATTTAAAAGATTTACAATATCAAATCACATCTAATCTTACAAGATATGATTCCCCTCAAT
33434695 ATTCTAAGATTAGTTTTCCTAATTACCAAGGTAGCCTAGCTTTCCATATTCGCATCATTGGGTCA
391 ATTCTAAGATTAGTTTTCCTAATTACCAAGGTAGCCTAGCTTTCCATATTCGCATCATTGGGTCA
33434760 CCCAAACTTCAAATGGCAGGCTTCTTCAACAGTTCTTTGAATCGAGCTAGCTCTCGTGGGTCAAA
456 CCCAAACTTCAAATGGCAGGCTTCTTCAACAGTTCTTTGAATCGAGCTAGCTCTCGTGGGTCAAA
33434825 TGATCCCTATCTAAACGATAGACCTCTATGGGATGCATTTTGTGTTATGGTCACAGGCTCTAAAC
521 TGATCCCTATCTAAACGATAGACCTCTATGGGATGCATTTTGTGTTATGGTCACAGGCTCTAAAC
* *
33434890 TGTAACATGTGACACTAAAACTACCTATAGCTTCTGCCTAACCTTAAATGGGAGGATAAATGTGC
586 TGTAACATGTGACACTAAAACTACCTATAGCCTCTGCCTAACCTTAAATAGGAGGATAAATGTGC
33434955 TTTAACGCTTTTGAACCCACATCCTCTTGCACTAAATAATGCCAATGCCAATGCCAATGCCAATA
651 TTTAACGCTTTTGAACCCACATCCTCTTGCACTAAATAATGCCAATGCCAATGCCAATGCCAATA
33435020 CCAACTAAGCTAAGACTCAATCAACTATTTTTCTCTCTAATATTGCATAAACCTTCATGTCTATA
716 CCAACTAAGCTAAGACTCAATCAACTATTTTTCTCTCTAATATTGCATAAACCTTCATGTCTATA
*
33435085 TTTCTATATGCCTCTTGGTTCAAAAAAATTTTTCTATACACCTCTATTCTTT
781 TTTCTATATGCCTCTTGGTTCAAAAAAAATTTTCTATACACCTCTATTCTTT
* *
33435137 CTTAGGCGATCATTTAGTTTCAAACATGCCTAAGTCAGCCTAGCCACCAAACAATTGAGGATTTA
1 CTTAGGCGATCATTTAGTTTCAAACATGCCTAAGTCAACCTAACCACCAAACAATTGAGGATTTA
33435202 CAAAGAATTCCACTAAAGCACCAAGTTATATAACGGAAGCAACACAAATCAAAAGAAGGCTAAAT
66 CAAAGAATTCCACTAAAGCACCAAGTTATATAACGGAAGCAACACAAATCAAAAGAAGGCTAAAT
33435267 GAACAAAAACAGAAAATAATGCACGAGAGGTGTTTGAATAAATGCTCTCAATATCTTCTTATTCA
131 GAACAAAAACAGAAAATAATGCACGAGAGGTGTTTGAATAAATGCTCTCAATATCTTCTTATTCA
33435332 CAAAGAATAATGAAACAATGGATGATTTACAAATGATGGGGAAGCTCTCTATTTATAGTTGAGCT
196 CAAAGAATAATGAAACAATGGATGATTTACAAATGATGGGGAAGCTCTCTATTTATAGTTGAGCT
33435397 CCCCCAAAATCGACGATCTATATCAAGTTAAATCGACGGACGATATTAAGCCTATCCCTAAAATT
261 CCCCCAAAATCGACGATCTATATCAAGTTAAATCGACGGACGATATTAAGCCTATCCCTAAAATT
*
33435462 AAGGGATTTAAAAGATTTACAATATCAAATCATATCTAATCTTACAAGATATGATTCCCCTCAAT
326 AAGGGATTTAAAAGATTTACAATATCAAATCACATCTAATCTTACAAGATATGATTCCCCTCAAT
33435527 ATTCTAAGATTAGTTTTCCTAATTACCAAGGTAGCCTAGCTTTCCATATTCGCATCATTGGGTCA
391 ATTCTAAGATTAGTTTTCCTAATTACCAAGGTAGCCTAGCTTTCCATATTCGCATCATTGGGTCA
33435592 CCCAAACTTCAAATGGCAGGCTTCTTCAACAGTTCTTTGAATCGAGCTAGCTCTCGTGGGTCAAA
456 CCCAAACTTCAAATGGCAGGCTTCTTCAACAGTTCTTTGAATCGAGCTAGCTCTCGTGGGTCAAA
33435657 TGATCCCTATCTAAACGATAGACCTCTATGGGATGCATTTTGTGTTATGGTCACAGGCTCTAAAC
521 TGATCCCTATCTAAACGATAGACCTCTATGGGATGCATTTTGTGTTATGGTCACAGGCTCTAAAC
33435722 TGTAACATGTGACACTAAAACTACCTATAGCCTCTGCCTAACCTTAAATAGGAGGATAAATGTGC
586 TGTAACATGTGACACTAAAACTACCTATAGCCTCTGCCTAACCTTAAATAGGAGGATAAATGTGC
*
33435787 TTTAACGCTTTTGAACCCACATCCTCTTGCACTAAATAATGTCAATGCCAATGCCAATGCCAATA
651 TTTAACGCTTTTGAACCCACATCCTCTTGCACTAAATAATGCCAATGCCAATGCCAATGCCAATA
*
33435852 CCAACTAAGCTAAGACTCAATCAACTCTTTTTCTCTCTAATATTGCATAAACCTTCATGTCTATA
716 CCAACTAAGCTAAGACTCAATCAACTATTTTTCTCTCTAATATTGCATAAACCTTCATGTCTATA
33435917 TTTCTATATGCCTCTTGGTTCAAAAAAAATTTTCTATACACCTCTATTCTTT
781 TTTCTATATGCCTCTTGGTTCAAAAAAAATTTTCTATACACCTCTATTCTTT
33435969 C
1 C
33435970 AATGTTTATT
Statistics
Matches: 821, Mismatches: 12, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
832 821 1.00
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.30
Consensus pattern (832 bp):
CTTAGGCGATCATTTAGTTTCAAACATGCCTAAGTCAACCTAACCACCAAACAATTGAGGATTTA
CAAAGAATTCCACTAAAGCACCAAGTTATATAACGGAAGCAACACAAATCAAAAGAAGGCTAAAT
GAACAAAAACAGAAAATAATGCACGAGAGGTGTTTGAATAAATGCTCTCAATATCTTCTTATTCA
CAAAGAATAATGAAACAATGGATGATTTACAAATGATGGGGAAGCTCTCTATTTATAGTTGAGCT
CCCCCAAAATCGACGATCTATATCAAGTTAAATCGACGGACGATATTAAGCCTATCCCTAAAATT
AAGGGATTTAAAAGATTTACAATATCAAATCACATCTAATCTTACAAGATATGATTCCCCTCAAT
ATTCTAAGATTAGTTTTCCTAATTACCAAGGTAGCCTAGCTTTCCATATTCGCATCATTGGGTCA
CCCAAACTTCAAATGGCAGGCTTCTTCAACAGTTCTTTGAATCGAGCTAGCTCTCGTGGGTCAAA
TGATCCCTATCTAAACGATAGACCTCTATGGGATGCATTTTGTGTTATGGTCACAGGCTCTAAAC
TGTAACATGTGACACTAAAACTACCTATAGCCTCTGCCTAACCTTAAATAGGAGGATAAATGTGC
TTTAACGCTTTTGAACCCACATCCTCTTGCACTAAATAATGCCAATGCCAATGCCAATGCCAATA
CCAACTAAGCTAAGACTCAATCAACTATTTTTCTCTCTAATATTGCATAAACCTTCATGTCTATA
TTTCTATATGCCTCTTGGTTCAAAAAAAATTTTCTATACACCTCTATTCTTT
Found at i:33436291 original size:139 final size:139
Alignment explanation
Indices: 33436089--33436369 Score: 413
Period size: 139 Copynumber: 2.0 Consensus size: 139
33436079 TTCTATTTAA
* * *
33436089 TTTTCACCTATTTTGGCCCTAAAACTTGCATTGTTTGTAAAATTCCTCCAAAACGGAT-GAAAAA
1 TTTTCACCTATTTTGACCCTAAAACTTGCATTGTTTGTAAAATTCCTCCAAAACAGATAAAAAAA
* *
33436153 TTTAACGCCTATTAATTTTTCTAATGTGGCATATACGTAGATGCCACATCAATAATTAATTAATT
66 ATTAACGCCTATTAATTTTACTAATGTGGCATATACGTAGATGCCACATCAATAATTAATTAA-T
33436218 TTTTTAAAAT
130 TTTTTAAAAT
* * * *
33436228 TTTTTACCTATTTTGACCCTTAAACTTGCATTGTTTGTCAAA-TCACTCCAAAATAGATAAAAAA
1 TTTTCACCTATTTTGACCCTAAAACTTGCATTGTTTGTAAAATTC-CTCCAAAACAGATAAAAAA
* * * *
33436292 AATTAATGTCTATTAATTTTACTAATGTGGCATATACGTGGATGCCACATCAGTAATTAATTAAT
65 AATTAACGCCTATTAATTTTACTAATGTGGCATATACGTAGATGCCACATCAATAATTAATTAAT
33436357 TTTTTAAAAT
130 TTTTTAAAAT
33436367 TTT
1 TTT
33436370 AAAAATTAAA
Statistics
Matches: 127, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
138 2 0.02
139 63 0.50
140 62 0.49
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.40
Consensus pattern (139 bp):
TTTTCACCTATTTTGACCCTAAAACTTGCATTGTTTGTAAAATTCCTCCAAAACAGATAAAAAAA
ATTAACGCCTATTAATTTTACTAATGTGGCATATACGTAGATGCCACATCAATAATTAATTAATT
TTTTAAAAT
Found at i:33447589 original size:22 final size:22
Alignment explanation
Indices: 33447545--33447602 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 22
33447535 CAAAAGAATG
*
33447545 AAATAAATAACATAAAACCATTTA
1 AAATAAAT-A-ATAAAACAATTTA
* *
33447569 AAATAAATAATGAAACAATTTT
1 AAATAAATAATAAAACAATTTA
*
33447591 AAATAAGTAATA
1 AAATAAATAATA
33447603 CATAAAAAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
22 20 0.69
23 1 0.03
24 8 0.28
ACGTcount: A:0.62, C:0.07, G:0.03, T:0.28
Consensus pattern (22 bp):
AAATAAATAATAAAACAATTTA
Found at i:33447813 original size:28 final size:27
Alignment explanation
Indices: 33447765--33447828 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 27
33447755 AGAAAGTCTA
* *
33447765 AAATAAATAATACGTGAAAAATAAATTT
1 AAATAAATAATACATGAAAAA-AAATAT
*
33447793 AAATAAATAATATAT-ATAAAAAAATAT
1 AAATAAATAATACATGA-AAAAAAATAT
*
33447820 AAAAAAATA
1 AAATAAATA
33447829 GCTTAATAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
27 14 0.45
28 17 0.55
ACGTcount: A:0.69, C:0.02, G:0.03, T:0.27
Consensus pattern (27 bp):
AAATAAATAATACATGAAAAAAAATAT
Found at i:33448908 original size:9 final size:9
Alignment explanation
Indices: 33448897--33448963 Score: 98
Period size: 9 Copynumber: 7.4 Consensus size: 9
33448887 TTTTGTTAAA
*
33448897 AATTAACCA
1 AATTAACCG
*
33448906 AATTACCCG
1 AATTAACCG
*
33448915 GATTAACCG
1 AATTAACCG
33448924 AATTAACCG
1 AATTAACCG
33448933 AATTAACCG
1 AATTAACCG
*
33448942 AATTGACCG
1 AATTAACCG
33448951 AATTAACCG
1 AATTAACCG
33448960 AATT
1 AATT
33448964 GAATCACTAC
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 51 1.00
ACGTcount: A:0.42, C:0.22, G:0.12, T:0.24
Consensus pattern (9 bp):
AATTAACCG
Found at i:33448998 original size:17 final size:17
Alignment explanation
Indices: 33448976--33449036 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
33448966 ATCACTACAC
33448976 TACATAATTAAAAATAT
1 TACATAATTAAAAATAT
** * *
33448993 TACATAAGTCTTTGAATTAC
1 TACATAA---TTAAAAATAT
*
33449013 TACATAATTAAAAACAT
1 TACATAATTAAAAATAT
33449030 TACATAA
1 TACATAA
33449037 GTCTTTGAAT
Statistics
Matches: 32, Mismatches: 9, Indels: 6
0.68 0.19 0.13
Matches are distributed among these distances:
17 19 0.59
20 13 0.41
ACGTcount: A:0.51, C:0.11, G:0.03, T:0.34
Consensus pattern (17 bp):
TACATAATTAAAAATAT
Found at i:33449024 original size:37 final size:37
Alignment explanation
Indices: 33448974--33449095 Score: 185
Period size: 37 Copynumber: 3.3 Consensus size: 37
33448964 GAATCACTAC
*
33448974 ACTACATAATTAAAAATATTACATAAGTCTTTGAATT
1 ACTACATAATTAAAAACATTACATAAGTCTTTGAATT
*
33449011 ACTACATAATTAAAAACATTACATAAGTCTTTGAATC
1 ACTACATAATTAAAAACATTACATAAGTCTTTGAATT
*
33449048 ACTAAATAATTAAAAACATTACATAAGTC-TTGAAATT
1 ACTACATAATTAAAAACATTACATAAGTCTTTG-AATT
33449085 AAC-ACATAATT
1 -ACTACATAATT
33449096 GAAATGTCAG
Statistics
Matches: 78, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
36 3 0.04
37 73 0.94
38 2 0.03
ACGTcount: A:0.48, C:0.13, G:0.05, T:0.34
Consensus pattern (37 bp):
ACTACATAATTAAAAACATTACATAAGTCTTTGAATT
Found at i:33451535 original size:18 final size:20
Alignment explanation
Indices: 33451505--33451549 Score: 60
Period size: 18 Copynumber: 2.4 Consensus size: 20
33451495 TGCAAGAAAA
33451505 AAAAT-TATATAATAA-ATT
1 AAAATATATATAATAATATT
33451523 AAAATATAT-TAATAATATT
1 AAAATATATATAATAATATT
33451542 AAACATAT
1 AAA-ATAT
33451550 TTTTATACTG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 11 0.46
19 9 0.38
20 4 0.17
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (20 bp):
AAAATATATATAATAATATT
Found at i:33456390 original size:13 final size:13
Alignment explanation
Indices: 33456358--33456391 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
33456348 ATTTGTATTT
* *
33456358 GGTTGGATAATTA
1 GGTTGGGTAAATA
33456371 GGTTGGGTAAATA
1 GGTTGGGTAAATA
33456384 GGTTGGGT
1 GGTTGGGT
33456392 TGGGTTGGCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.24, C:0.00, G:0.41, T:0.35
Consensus pattern (13 bp):
GGTTGGGTAAATA
Found at i:33457626 original size:44 final size:44
Alignment explanation
Indices: 33457563--33457759 Score: 150
Period size: 44 Copynumber: 4.5 Consensus size: 44
33457553 TCCACTCCAT
* *
33457563 TGCAACTTTAGAGAGATAAGAATCGTAACTTCAACCTGCCCCAC
1 TGCAACTTTAGGGAGATAAGATTCGTAACTTCAACCTGCCCCAC
* * * * * *
33457607 TGCAACTTTAGGGGGATAAGGTTTG-AGGCTTCAATCTGCTCCAC
1 TGCAACTTTAGGGAGATAAGATTCGTA-ACTTCAACCTGCCCCAC
* * * * * * *
33457651 TTG-AACTTCAAGGAGATAAGATTTAC-TATCTTCGATCTACTCCAC
1 -TGCAACTTTAGGGAGATAAGA-TT-CGTAACTTCAACCTGCCCCAC
*
33457696 TGCAACTTTAGGGAGATAAGACTT-GTAACTTCGACCTGCCCCAC
1 TGCAACTTTAGGGAGATAAGA-TTCGTAACTTCAACCTGCCCCAC
* * *
33457740 TACAACTTCAGGGGGATAAG
1 TGCAACTTTAGGGAGATAAG
33457760 GTCTGTGGCT
Statistics
Matches: 120, Mismatches: 26, Indels: 14
0.75 0.16 0.09
Matches are distributed among these distances:
43 1 0.01
44 82 0.68
45 36 0.30
46 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.27
Consensus pattern (44 bp):
TGCAACTTTAGGGAGATAAGATTCGTAACTTCAACCTGCCCCAC
Found at i:33457794 original size:133 final size:132
Alignment explanation
Indices: 33457551--33457853 Score: 383
Period size: 133 Copynumber: 2.3 Consensus size: 132
33457541 GGAATTGTTT
* * * * *
33457551 GATCCACTCCATTGCAACTTTAGAGAGATAAGAATCGTAACTTCAACCTGCCCCACTGCAACTTT
1 GATCTACTCCACTGCAACTTTAGGGAGATAAGAATCGTAACTTCAACCTGCCCCACTACAACTTC
* * * * *
33457616 AGGGGGATAAGGTTTGAGGCTTCAATCTGCTCCACTTGAACTTCAAGGAGATAAGATTTACTATC
66 AGGGGGATAAGGTCTGAGGCTTCAATCTGATCCACTTCAACTTCAAGGAGATAAGA-TTAATAGC
33457681 TTC
130 TTC
* * *
33457684 GATCTACTCCACTGCAACTTTAGGGAGATAAGACTTGTAACTTCGACCTGCCCCACTACAACTTC
1 GATCTACTCCACTGCAACTTTAGGGAGATAAGAATCGTAACTTCAACCTGCCCCACTACAACTTC
* * *
33457749 AGGGGGATAAGGTCTGTGGCTTCAATTTGATCCA-TTACAACTTCAAGGAGATAAGATTAATGGC
66 AGGGGGATAAGGTCTGAGGCTTCAATCTGATCCACTT-CAACTTCAAGGAGATAAGATTAATAGC
*
33457813 TTT
130 TTC
* * * * *
33457816 AATCTGCTCCACTGCAACATCAGGGAGATAAGATTCGT
1 GATCTACTCCACTGCAACTTTAGGGAGATAAGAATCGT
33457854 CATGATAGAT
Statistics
Matches: 146, Mismatches: 23, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
132 41 0.28
133 105 0.72
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (132 bp):
GATCTACTCCACTGCAACTTTAGGGAGATAAGAATCGTAACTTCAACCTGCCCCACTACAACTTC
AGGGGGATAAGGTCTGAGGCTTCAATCTGATCCACTTCAACTTCAAGGAGATAAGATTAATAGCT
TC
Found at i:33457813 original size:44 final size:44
Alignment explanation
Indices: 33457765--33457850 Score: 109
Period size: 44 Copynumber: 2.0 Consensus size: 44
33457755 ATAAGGTCTG
* * *
33457765 TGGCTTCAATTTGATCCATTACAACTTCAAGGAGATAAGATTAA
1 TGGCTTCAATCTGATCCACTACAACATCAAGGAGATAAGATTAA
* * * *
33457809 TGGCTTTAATCTGCTCCACTGCAACATCAGGGAGATAAGATT
1 TGGCTTCAATCTGATCCACTACAACATCAAGGAGATAAGATT
33457851 CGTCATGATA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 35 1.00
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.30
Consensus pattern (44 bp):
TGGCTTCAATCTGATCCACTACAACATCAAGGAGATAAGATTAA
Found at i:33457948 original size:21 final size:21
Alignment explanation
Indices: 33457919--33457959 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
33457909 GCAGTTTTAA
*
33457919 TCTGTTCCACTGCAACTTCAG
1 TCTGCTCCACTGCAACTTCAG
33457940 TCTGCTCCACTGCAACTTCA
1 TCTGCTCCACTGCAACTTCA
33457960 AGGAGATAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.37, G:0.12, T:0.32
Consensus pattern (21 bp):
TCTGCTCCACTGCAACTTCAG
Found at i:33457995 original size:44 final size:44
Alignment explanation
Indices: 33457941--33458056 Score: 151
Period size: 44 Copynumber: 2.6 Consensus size: 44
33457931 CAACTTCAGT
33457941 CTGCTCCACTGCAACTTCAAGGAGATAAGACTTGTAACTTAAAC
1 CTGCTCCACTGCAACTTCAAGGAGATAAGACTTGTAACTTAAAC
* ** ** * *
33457985 CTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGCTTTAAT
1 CTGCTCCACTGCAACTTCAAGGAGATAAGACTTGTAACTTAAAC
* *
33458029 CTGCTCCACTGTAACTTTAAGGAGATAA
1 CTGCTCCACTGCAACTTCAAGGAGATAA
33458057 ATTTCGTCAT
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 62 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.28
Consensus pattern (44 bp):
CTGCTCCACTGCAACTTCAAGGAGATAAGACTTGTAACTTAAAC
Found at i:33458151 original size:44 final size:44
Alignment explanation
Indices: 33458087--33458753 Score: 148
Period size: 44 Copynumber: 14.5 Consensus size: 44
33458077 ATCCGACCTG
33458087 CTGCAACTTCAGAG-GTATAGGATTTATAGCTTTAATCTGCTCTA
1 CTGCAACTTCAGAGAG-ATAGGATTTATAGCTTTAATCTGCTCTA
* * * * *
33458131 CTGCAACTTCAGAGAGATAGGATTCACTA-TTTTCAGTCTGTTCTG
1 CTGCAACTTCAGAGAGATAGGATTTA-TAGCTTT-AATCTGCTCTA
* * * * * * *
33458176 CTGTAACTTCAG-GAAGATACGACTTGTA-ATTTCAACCTGCTCCA
1 CTGCAACTTCAGAG-AGATAGGATTTATAGCTTT-AATCTGCTCTA
** * * ** *
33458220 CTATAACTTTAGAGAGATAAGG--TTAGTGGCTTCGATCTGCTCCA
1 CTGCAACTTCAGAGAGAT-AGGATTTA-TAGCTTTAATCTGCTCTA
* * * * * * *
33458264 CTGCAACTTCAGGGAGATAAGATTCGCCATGGTAGATTTGATCCGAC-CTG
1 CTGCAACTTCAGAGAGATAGGATT-----T-ATAGCTTTAATCTG-CTCTA
* * *
33458314 CTGCAACTTTAGAG-GTATAAGATTTATAGCTTTAATCTGCTCTG
1 CTGCAACTTCAGAGAG-ATAGGATTTATAGCTTTAATCTGCTCTA
* * ** * * **
33458358 CTGCAACTTCAGAGATATAAGATTCGCTA-TTTTAAGTCTTCTCCG
1 CTGCAACTTCAGAGAGATAGGATT-TATAGCTTTAA-TCTGCTCTA
* * * * *
33458403 CTGCAACTTCA-AGGAGATACGACTTGTAACTTTAACCTGCTAC-A
1 CTGCAACTTCAGA-GAGATAGGATTTATAGCTTTAATCTGCT-CTA
* *
33458447 CTGCAACTTTAGGGAGATAAGGTTAGTGGCTTGATTTATAGCTTTAATCTGCTCTA
1 CTGCAACTTCA--GAG---A-G--A-TAG---GATTTATAGCTTTAATCTGCTCTA
* * * * *
33458503 CTGCAACTTCAGAGAGATAGGATTCACTA-TTTTCAGTCTGTTCTG
1 CTGCAACTTCAGAGAGATAGGATTTA-TAGCTTT-AATCTGCTCTA
* * * * * * *
33458548 CTGTAACTTCAG-GAAGATACGACTTGTA-ATTTCAACCTGCTCCA
1 CTGCAACTTCAGAG-AGATAGGATTTATAGCTTT-AATCTGCTCTA
** * * ** *
33458592 CTATAACTTTAGAGAGATAAGG--TTAGTGGCTTCGATCTGCTCCA
1 CTGCAACTTCAGAGAGAT-AGGATTTA-TAGCTTTAATCTGCTCTA
* * * *
33458636 CTGCAACTTCAGGGAGATAAGATTTGTCATGGTAGGTTTGAT-TCGAC-CTA
1 CTGCAACTTCAGAGAGATAGGA-TT-T-A---TAGCTTTAATCT-G-CTCTA
* * * *
33458686 CTGTAACTTTAGAG-GTATAAGATTTATAGCTTTAATTTGCTCTA
1 CTGCAACTTCAGAGAG-ATAGGATTTATAGCTTTAATCTGCTCTA
33458730 CTGCAACTTCAGAGAGATAGGATT
1 CTGCAACTTCAGAGAGATAGGATT
33458754 CGCTATTTTC
Statistics
Matches: 454, Mismatches: 110, Indels: 118
0.67 0.16 0.17
Matches are distributed among these distances:
43 10 0.02
44 223 0.49
45 107 0.24
46 2 0.00
47 5 0.01
48 3 0.01
49 6 0.01
50 61 0.13
51 3 0.01
52 1 0.00
53 1 0.00
54 3 0.01
55 1 0.00
56 28 0.06
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.33
Consensus pattern (44 bp):
CTGCAACTTCAGAGAGATAGGATTTATAGCTTTAATCTGCTCTA
Found at i:33458330 original size:227 final size:226
Alignment explanation
Indices: 33457935--33458478 Score: 779
Period size: 227 Copynumber: 2.4 Consensus size: 226
33457925 CCACTGCAAC
* * * *
33457935 TTCAGTCTGCTCCACTGCAACTTCAAGGAGATAAGACTTGTAACTTAAACCTGCTCCACTGCAAC
1 TTCAGTCTGTTCCGCTGCAACTTCAAGGAGATACGACTTGTAA-TTTAACCTGCTCCACTGCAAC
* * * * * *
33458000 TTCAGGGAGATAAGGTTTGTGGCTTTAATCTGCTCCACTGTAACTTTAAGGAGATAAATTTCGTC
65 TTTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAATTTCGCC
*
33458065 ATAGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAGGATTTATAGCTTTAATCTGCTCT
130 ATAGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCTCT
*
33458130 ACTGCAACTTCAGAGAGATAGGATTCACTATT
195 ACTGCAACTTCAGAGAGATAAGATTCACTATT
* * **
33458162 TTCAGTCTGTTCTGCTGTAACTTC-AGGAAGATACGACTTGTAATTTCAACCTGCTCCACTATAA
1 TTCAGTCTGTTCCGCTGCAACTTCAAGG-AGATACGACTTGTAATTT-AACCTGCTCCACTGCAA
* * *
33458226 CTTTAGAGAGATAAGGTTAGTGGCTTCGATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTCG
64 CTTTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAA-ATTTCG
* *
33458290 CCATGGTAGATTTGATCCGACCTGCTGCAACTTTAGAGGTATAAGATTTATAGCTTTAATCTGCT
128 CCATAGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCT
* * *
33458355 CTGCTGCAACTTCAGAGATATAAGATTCGCTATT
193 CTACTGCAACTTCAGAGAGATAAGATTCACTATT
* *
33458389 TTAAGTCT-TCTCCGCTGCAACTTCAAGGAGATACGACTTGTAACTTTAACCTGCTACACTGCAA
1 TTCAGTCTGT-TCCGCTGCAACTTCAAGGAGATACGACTTGTAA-TTTAACCTGCTCCACTGCAA
33458453 CTTTAGGGAGATAAGGTTAGTGGCTT
64 CTTTAGGGAGATAAGGTTAGTGGCTT
33458479 GATTTATAGC
Statistics
Matches: 280, Mismatches: 31, Indels: 12
0.87 0.10 0.04
Matches are distributed among these distances:
226 6 0.02
227 267 0.95
228 7 0.03
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (226 bp):
TTCAGTCTGTTCCGCTGCAACTTCAAGGAGATACGACTTGTAATTTAACCTGCTCCACTGCAACT
TTAGGGAGATAAGGTTAGTGGCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAATTTCGCCA
TAGTAGATTTGATCCGACCTGCTGCAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCTCTA
CTGCAACTTCAGAGAGATAAGATTCACTATT
Found at i:33458498 original size:145 final size:145
Alignment explanation
Indices: 33458334--33458623 Score: 433
Period size: 145 Copynumber: 2.0 Consensus size: 145
33458324 AGAGGTATAA
* * *
33458334 GATTTATAGCTTTAATCTGCTCTGCTGCAACTTCAGAGATATAAGATTCGCTATTTTAAGTCT-T
1 GATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTCACTATTTTAAGTCTGT
* *
33458398 CTCCGCTGCAACTTCAAGG-AGATACGACTTGTAACTTT-AACCTGCTACACTGCAACTTTAGGG
66 -TCCGCTGCAACTTC-AGGAAGATACGACTTGTAA-TTTCAACCTGCTACACTACAACTTTAGAG
33458461 AGATAAGGTTAGTGGCTT
128 AGATAAGGTTAGTGGCTT
* *
33458479 GATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAGGATTCACTATTTTCAGTCTGT
1 GATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTCACTATTTTAAGTCTGT
* * * *
33458544 TCTGCTGTAACTTCAGGAAGATACGACTTGTAATTTCAACCTGCTCCACTATAACTTTAGAGAGA
66 TCCGCTGCAACTTCAGGAAGATACGACTTGTAATTTCAACCTGCTACACTACAACTTTAGAGAGA
33458609 TAAGGTTAGTGGCTT
131 TAAGGTTAGTGGCTT
33458624 CGATCTGCTC
Statistics
Matches: 131, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
144 6 0.05
145 124 0.95
146 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.34
Consensus pattern (145 bp):
GATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTCACTATTTTAAGTCTGT
TCCGCTGCAACTTCAGGAAGATACGACTTGTAATTTCAACCTGCTACACTACAACTTTAGAGAGA
TAAGGTTAGTGGCTT
Found at i:33458793 original size:372 final size:372
Alignment explanation
Indices: 33458107--33458846 Score: 1320
Period size: 372 Copynumber: 2.0 Consensus size: 372
33458097 AGAGGTATAG
33458107 GATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAGGATTCACTATTTTCAGTCTGT
1 GATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAGGATTCACTATTTTCAGTCTGT
33458172 TCTGCTGTAACTTCAGGAAGATACGACTTGTAATTTCAACCTGCTCCACTATAACTTTAGAGAGA
66 TCTGCTGTAACTTCAGGAAGATACGACTTGTAATTTCAACCTGCTCCACTATAACTTTAGAGAGA
33458237 TAAGGTTAGTGGCTTCGATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATGGTAGATT
131 TAAGGTTAGTGGCTTCGATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATGGTAGATT
* *
33458302 TGATCCGACCTGCTGCAACTTTAGAGGTATAAGATTTATAGCTTTAATCTGCTCTGCTGCAACTT
196 TGATCCGACCTACTGCAACTTTAGAGGTATAAGATTTATAGCTTTAATCTGCTCTACTGCAACTT
*
33458367 CAGAGATATAAGATTCGCTATTTTAAGTCTTCTCCGCTGCAACTTCAAGGAGATACGACTTGTAA
261 CAGAGAGATAAGATTCGCTATTTTAAGTCTTCTCCGCTGCAACTTCAAGGAGATACGACTTGTAA
*
33458432 CTTTAACCTGCTACACTGCAACTTTAGGGAGATAAGGTTAGTGGCTT
326 CTTAAACCTGCTACACTGCAACTTTAGGGAGATAAGGTTAGTGGCTT
33458479 GATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAGGATTCACTATTTTCAGTCTGT
1 GATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAGGATTCACTATTTTCAGTCTGT
33458544 TCTGCTGTAACTTCAGGAAGATACGACTTGTAATTTCAACCTGCTCCACTATAACTTTAGAGAGA
66 TCTGCTGTAACTTCAGGAAGATACGACTTGTAATTTCAACCTGCTCCACTATAACTTTAGAGAGA
* * *
33458609 TAAGGTTAGTGGCTTCGATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTCATGGTAGGTT
131 TAAGGTTAGTGGCTTCGATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATGGTAGATT
* * *
33458674 TGATTCGACCTACTGTAACTTTAGAGGTATAAGATTTATAGCTTTAATTTGCTCTACTGCAACTT
196 TGATCCGACCTACTGCAACTTTAGAGGTATAAGATTTATAGCTTTAATCTGCTCTACTGCAACTT
* * * * *
33458739 CAGAGAGATAGGATTCGCTATTTTCAGTCTGT-TCCGCTGTAACTTTAGGGAGATACGACTTGTA
261 CAGAGAGATAAGATTCGCTATTTTAAGTCT-TCTCCGCTGCAACTTCAAGGAGATACGACTTGTA
*
33458803 ACTTAAACCTGCTCCACTGCAACTTTAGGGAGATAAGGTTAGTG
325 ACTTAAACCTGCTACACTGCAACTTTAGGGAGATAAGGTTAGTG
33458847 TCTTCGATCT
Statistics
Matches: 351, Mismatches: 16, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
372 350 1.00
373 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.33
Consensus pattern (372 bp):
GATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAGGATTCACTATTTTCAGTCTGT
TCTGCTGTAACTTCAGGAAGATACGACTTGTAATTTCAACCTGCTCCACTATAACTTTAGAGAGA
TAAGGTTAGTGGCTTCGATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATGGTAGATT
TGATCCGACCTACTGCAACTTTAGAGGTATAAGATTTATAGCTTTAATCTGCTCTACTGCAACTT
CAGAGAGATAAGATTCGCTATTTTAAGTCTTCTCCGCTGCAACTTCAAGGAGATACGACTTGTAA
CTTAAACCTGCTACACTGCAACTTTAGGGAGATAAGGTTAGTGGCTT
Found at i:33458864 original size:44 final size:44
Alignment explanation
Indices: 33458811--33458971 Score: 171
Period size: 44 Copynumber: 3.7 Consensus size: 44
33458801 TAACTTAAAC
* * * *
33458811 CTGCTCCACTGCAACTTTAGGGAGATAAGGTTAGTGTCTTCGAT
1 CTGCTCCACTACAACTTCAGGGAGATAAGGTTAGTGGCTTCAAT
* *
33458855 CTGCCCCACTACAACTTCAGGGGGATAAGGTCT-GTGGCTTCAAT
1 CTGCTCCACTACAACTTCAGGGAGATAAGGT-TAGTGGCTTCAAT
* * * * * * *
33458899 TTGATCCATTACAACTTCAAGGAGATAAGATTAATGGCTTTAAT
1 CTGCTCCACTACAACTTCAGGGAGATAAGGTTAGTGGCTTCAAT
* *
33458943 CTGCTCCACTGCAACATCAGGGAGATAAG
1 CTGCTCCACTACAACTTCAGGGAGATAAG
33458972 ATTCGTCATG
Statistics
Matches: 94, Mismatches: 21, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
43 1 0.01
44 92 0.98
45 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (44 bp):
CTGCTCCACTACAACTTCAGGGAGATAAGGTTAGTGGCTTCAAT
Found at i:33459072 original size:21 final size:21
Alignment explanation
Indices: 33459043--33459083 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
33459033 GCAGTTTTAA
*
33459043 TCTGTTCCACTGCAACTTCAG
1 TCTGCTCCACTGCAACTTCAG
33459064 TCTGCTCCACTGCAACTTCA
1 TCTGCTCCACTGCAACTTCA
33459084 AGGAGATAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.37, G:0.12, T:0.32
Consensus pattern (21 bp):
TCTGCTCCACTGCAACTTCAG
Found at i:33459746 original size:44 final size:44
Alignment explanation
Indices: 33459721--33459880 Score: 302
Period size: 44 Copynumber: 3.6 Consensus size: 44
33459711 AACTTCAACG
* *
33459721 TGCTCCACTGTAACTTCAGGGAGATAAGGTTAGTGGCTTTAATA
1 TGCTCCACTGCAACTTTAGGGAGATAAGGTTAGTGGCTTTAATA
33459765 TGCTCCACTGCAACTTTAGGGAGATAAGGTTAGTGGCTTTAATA
1 TGCTCCACTGCAACTTTAGGGAGATAAGGTTAGTGGCTTTAATA
33459809 TGCTCCACTGCAACTTTAGGGAGATAAGGTTAGTGGCTTTAATA
1 TGCTCCACTGCAACTTTAGGGAGATAAGGTTAGTGGCTTTAATA
33459853 TGCTCCACTGCAACTTTAGGGAGATAAG
1 TGCTCCACTGCAACTTTAGGGAGATAAG
33459881 ATTCGCGATG
Statistics
Matches: 114, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 114 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.31
Consensus pattern (44 bp):
TGCTCCACTGCAACTTTAGGGAGATAAGGTTAGTGGCTTTAATA
Found at i:33459779 original size:216 final size:216
Alignment explanation
Indices: 33459399--33459792 Score: 558
Period size: 216 Copynumber: 1.8 Consensus size: 216
33459389 AGAGGTATAG
** * * *
33459399 GATTTATATTTTTAATTTGCTCTGCTGTAACTTCAAAGAGATAAGATTCGCTATTTTCAGTCTGC
1 GATTTATAGCTTTAATCTGCTCTACTGTAACTTCAAAGAGATAAGATTCGCTATTTTCAGCCTGC
* * * *
33459464 TCCGCTGCAACTTCAGGGAGATACGACTTGTAACTTCAACCTATTCCACTGCAACTTTAGGGAGA
66 TCCGCTGCAACTTCAGGAAGATAAGACTTGTAACTTCAACCTACTCCACTGCAACTTCAGGGAGA
* *
33459529 TAAGGTTAGTGGCTTCTACCTGCTCCATTGCAACTTCAGGGAGATAAGATTCGCCATGGTAGATT
131 TAAGGTTAGTGGCTTCTACATGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATGGTAGATT
33459594 TGATCTGACCTGCTGCAACTT
196 TGATCTGACCTGCTGCAACTT
*
33459615 GATTTATAGCTTTAATCTGCTCTACTGTAACTTCAGAGAGATAAGATTCGCTATTTTCAGCC-GT
1 GATTTATAGCTTTAATCTGCTCTACTGTAACTTCAAAGAGATAAGATTCGCTATTTTCAGCCTG-
* * * * * * * *
33459679 CTTCGTTGTAACTTTAGGAAGATAAGAGTTGTAACTTCAACGTGCTCCACTGTAACTTCAGGGAG
65 CTCCGCTGCAACTTCAGGAAGATAAGACTTGTAACTTCAACCTACTCCACTGCAACTTCAGGGAG
* *
33459744 ATAAGGTTAGTGGCTT-TAATATGCTCCACTGCAACTTTAGGGAGATAAG
130 ATAAGGTTAGTGGCTTCT-ACATGCTCCACTGCAACTTCAGGGAGATAAG
33459793 GTTAGTGGCT
Statistics
Matches: 154, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
215 2 0.01
216 152 0.99
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.33
Consensus pattern (216 bp):
GATTTATAGCTTTAATCTGCTCTACTGTAACTTCAAAGAGATAAGATTCGCTATTTTCAGCCTGC
TCCGCTGCAACTTCAGGAAGATAAGACTTGTAACTTCAACCTACTCCACTGCAACTTCAGGGAGA
TAAGGTTAGTGGCTTCTACATGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATGGTAGATT
TGATCTGACCTGCTGCAACTT
Found at i:33459823 original size:304 final size:304
Alignment explanation
Indices: 33459508--33460096 Score: 1117
Period size: 304 Copynumber: 1.9 Consensus size: 304
33459498 TTCAACCTAT
* *
33459508 TCCACTGCAACTTTAGGGAGATAAGGTTAGTGGCTTCT-ACCTGCTCCATTGCAACTTCAGGGAG
1 TCCACTGCAACTTTAGGGAGATAAGGTTAGTGGCTT-TAACATGCTCCACTGCAACTTCAGGGAG
33459572 ATAAGATTCGCCATGGTAGATTTGATCTGACCTGCTGCAACTTGATTTATAGCTTTAATCTGCTC
65 ATAAGATTCGCCATGGTAGATTTGATCTGACCTGCTGCAACTTGATTTATAGCTTTAATCTGCTC
33459637 TACTGTAACTTCAGAGAGATAAGATTCGCTATTTTCAGCCGTCTTCGTTGTAACTTTAGGAAGAT
130 TACTGTAACTTCAGAGAGATAAGATTCGCTATTTTCAGCCGTCTTCGTTGTAACTTTAGGAAGAT
33459702 AAGAGTTGTAACTTCAACGTGCTCCACTGTAACTTCAGGGAGATAAGGTTAGTGGCTTTAATATG
195 AAGAGTTGTAACTTCAACGTGCTCCACTGTAACTTCAGGGAGATAAGGTTAGTGGCTTTAATATG
33459767 CTCCACTGCAACTTTAGGGAGATAAGGTTAGTGGCTTTAATATGC
260 CTCCACTGCAACTTTAGGGAGATAAGGTTAGTGGCTTTAATATGC
* *
33459812 TCCACTGCAACTTTAGGGAGATAAGGTTAGTGGCTTTAATATGCTCCACTGCAACTTTAGGGAGA
1 TCCACTGCAACTTTAGGGAGATAAGGTTAGTGGCTTTAACATGCTCCACTGCAACTTCAGGGAGA
*
33459877 TAAGATTCGCGATGGTAGATTTGATCTGACCTGCTGCAACTTGATTTATAGCTTTAATCTGCTCT
66 TAAGATTCGCCATGGTAGATTTGATCTGACCTGCTGCAACTTGATTTATAGCTTTAATCTGCTCT
33459942 ACTGTAACTTCAGAGAGATAAGATTCGCTATTTTCAGCCGTCTTCGTTGTAACTTTAGGAAGATA
131 ACTGTAACTTCAGAGAGATAAGATTCGCTATTTTCAGCCGTCTTCGTTGTAACTTTAGGAAGATA
33460007 AGAGTTGTAACTTCAACGTGCTCCACTGTAACTTCAGGGAGATAAGGTTAGTGGCTTTAATATGC
196 AGAGTTGTAACTTCAACGTGCTCCACTGTAACTTCAGGGAGATAAGGTTAGTGGCTTTAATATGC
33460072 TCCACTGCAACTTTAGGGAGATAAG
261 TCCACTGCAACTTTAGGGAGATAAG
33460097 ATTCGCCATG
Statistics
Matches: 279, Mismatches: 5, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
303 1 0.00
304 278 1.00
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.32
Consensus pattern (304 bp):
TCCACTGCAACTTTAGGGAGATAAGGTTAGTGGCTTTAACATGCTCCACTGCAACTTCAGGGAGA
TAAGATTCGCCATGGTAGATTTGATCTGACCTGCTGCAACTTGATTTATAGCTTTAATCTGCTCT
ACTGTAACTTCAGAGAGATAAGATTCGCTATTTTCAGCCGTCTTCGTTGTAACTTTAGGAAGATA
AGAGTTGTAACTTCAACGTGCTCCACTGTAACTTCAGGGAGATAAGGTTAGTGGCTTTAATATGC
TCCACTGCAACTTTAGGGAGATAAGGTTAGTGGCTTTAATATGC
Found at i:33460031 original size:216 final size:220
Alignment explanation
Indices: 33459809--33460323 Score: 693
Period size: 227 Copynumber: 2.3 Consensus size: 220
33459799 GGCTTTAATA
33459809 TGCTCCACTGCAACTTTAGGGAGATAAGGTTAGTGGCTTTAATATGCTCCACTGCAACTTTAGGG
1 TGCTCCACTGCAACTTTAGGGAGATAAGGTTAGTGGCTTTAATATGCTCCACTGCAACTTTAGGG
* * * *
33459874 AGATAAGATTCGCGATGGTAGATTTGATCTGACCTGCTGCAA-C-T-T-GATTTATAGCTTTAAT
66 AGATAAGATTCGCCATGGTAGATTTCATCCGACCTGCTGCAATCATATAGATTTATAGCTATAAT
* * * * * *
33459935 CTGCTCTACTGTAACTTCAGAGAGATAAGATTCGCTATTTTCAGCCGT-CTTCGTTGTAACTTTA
131 CTGCTCTACTGCAACTTCAGAGAGATAAGATTCGCTATTTTCAACC-TACTCCGCTGCAACTTCA
* *
33459999 G-GAAGATA-AGAGTTGTAACTTCAACG
195 GAG-AGATACA-ACTTGTAACTTCAACC
* *
33460025 TGCTCCACTGTAACTTCAGGGAGATAAGGTTAGTGGCTTTAATATGCTCCACTGCAACTTTAGGG
1 TGCTCCACTGCAACTTTAGGGAGATAAGGTTAGTGGCTTTAATATGCTCCACTGCAACTTTAGGG
33460090 AGATAAGATTCGCCATGGTAGATTTCATCCGACCTGCTGCAACTTCAAAGGTATAGGATTTATAG
66 AGATAAGATTCGCCATGGTAGATTTCATCCGACCTGCTGCAA--TC--A--TATA-GATTTATAG
* * *
33460155 CTATAATTTGCTCTACTGCAACTTCAGATAGATAAGATTCGCTATTTTCAATCTACTCCGCTGCA
124 CTATAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTCGCTATTTTCAACCTACTCCGCTGCA
33460220 ACTTCAGAGAGATACAACTTGTAACTTCAACC
189 ACTTCAGAGAGATACAACTTGTAACTTCAACC
* * * * *
33460252 TGCTCCACTACAACTTTAGGGAGATAAGGTTAGTGGCTTTGATTTGTTCCACTGCAACTTCAGGG
1 TGCTCCACTGCAACTTTAGGGAGATAAGGTTAGTGGCTTTAATATGCTCCACTGCAACTTTAGGG
33460317 AGATAAG
66 AGATAAG
33460324 GTTAGTGGTT
Statistics
Matches: 261, Mismatches: 24, Indels: 17
0.86 0.08 0.06
Matches are distributed among these distances:
216 102 0.39
219 1 0.00
224 1 0.00
225 1 0.00
226 1 0.00
227 153 0.59
228 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.32
Consensus pattern (220 bp):
TGCTCCACTGCAACTTTAGGGAGATAAGGTTAGTGGCTTTAATATGCTCCACTGCAACTTTAGGG
AGATAAGATTCGCCATGGTAGATTTCATCCGACCTGCTGCAATCATATAGATTTATAGCTATAAT
CTGCTCTACTGCAACTTCAGAGAGATAAGATTCGCTATTTTCAACCTACTCCGCTGCAACTTCAG
AGAGATACAACTTGTAACTTCAACC
Found at i:33460050 original size:44 final size:45
Alignment explanation
Indices: 33459989--33460097 Score: 132
Period size: 44 Copynumber: 2.5 Consensus size: 45
33459979 CCGTCTTCGT
* *
33459989 TGTAACTTTAGGAAGATAAGAGTT-GTAACTTCAACGTGCTCCAC
1 TGTAACTTTAGGGAGATAAGAGTTAGTAACTTCAACATGCTCCAC
* ** * *
33460033 TGTAACTTCAGGGAGATAAG-GTTAGTGGCTTTAATATGCTCCAC
1 TGTAACTTTAGGGAGATAAGAGTTAGTAACTTCAACATGCTCCAC
*
33460077 TGCAACTTTAGGGAGATAAGA
1 TGTAACTTTAGGGAGATAAGA
33460098 TTCGCCATGG
Statistics
Matches: 54, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
43 3 0.06
44 51 0.94
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (45 bp):
TGTAACTTTAGGGAGATAAGAGTTAGTAACTTCAACATGCTCCAC
Found at i:33460303 original size:44 final size:44
Alignment explanation
Indices: 33460255--33460637 Score: 334
Period size: 44 Copynumber: 8.6 Consensus size: 44
33460245 TTCAACCTGC
* *
33460255 TCCACTACAACTTTAGGGAGATAAGGTTAGTGGCTTTGATTTGT
1 TCCACTGCAACTTCAGGGAGATAAGGTTAGTGGCTTTGATTTGT
*
33460299 TCCACTGCAACTTCAGGGAGATAAGGTTAGTGG-TTTCGATCTGT
1 TCCACTGCAACTTCAGGGAGATAAGGTTAGTGGCTTT-GATTTGT
* * * * * *
33460343 TCCACTACAACTTCAGGGAGATAAGATTCGCCAT-G-ATAGATTTGA
1 TCCACTGCAACTTCAGGGAGATAAGGTTAG---TGGCTTTGATTTGT
* * * *
33460388 TCCGACCTGCTACAACTTCA--GAG-TATAGGATTTA-TAGCTTTAATCTGC
1 TCC-A-CTG---CAACTTCAGGGAGATA-AGG--TTAGTGGCTTTGATTTGT
* * * * ** * * *
33460436 TCTACTGCAACATCAGAGAGAT-AGGATTCACT-ATTTTCAGTCTGA
1 TCCACTGCAACTTCAGGGAGATAAGG-TT-AGTGGCTTTGA-TTTGT
* * * *
33460481 TCCGCCGTAACTTTAGGGAGATAAGGTTAGTGGCTTTGATTTGT
1 TCCACTGCAACTTCAGGGAGATAAGGTTAGTGGCTTTGATTTGT
33460525 TCCACTGCAACTTCAGGGAGATAAGGTTAGTGGCTTTGATTTGT
1 TCCACTGCAACTTCAGGGAGATAAGGTTAGTGGCTTTGATTTGT
33460569 TCCACTGCAACTTCAGGGAGATAAGGTTAGTGGCTTTGATTTGT
1 TCCACTGCAACTTCAGGGAGATAAGGTTAGTGGCTTTGATTTGT
33460613 TCCACTGCAACTTCAGGGAGATAAG
1 TCCACTGCAACTTCAGGGAGATAAG
33460638 ATTCGCCATG
Statistics
Matches: 275, Mismatches: 42, Indels: 44
0.76 0.12 0.12
Matches are distributed among these distances:
43 12 0.04
44 186 0.68
45 37 0.13
46 11 0.04
47 7 0.03
48 12 0.04
50 10 0.04
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (44 bp):
TCCACTGCAACTTCAGGGAGATAAGGTTAGTGGCTTTGATTTGT
Found at i:33460522 original size:226 final size:226
Alignment explanation
Indices: 33460263--33461305 Score: 965
Period size: 226 Copynumber: 4.7 Consensus size: 226
33460253 GCTCCACTAC
** * *
33460263 AACTTTAGGGAGATAAGGTTAGTGGCTTTGATTTGTTCCACTGCAACTTCAGGGAGATAAGGTTA
1 AACTTTAGGGAGATAAGGTTAGTAACTTTAATTTGCTCCACTGCAACTTCAGGGAGATAAGGTTA
* * *
33460328 GTGGTTTCGATCTGTTCCACTACAACTTCAGGGAGATAAGATTCGCCATGATAGATTTGATCCGA
66 GTGGCTTCGATCTGTTCCACTGCAACTTCAGGGAGATAAGATTCGCCATGGTAGATTTGATCCGA
*
33460393 CCTGCTACAACTTCAGAGTATAGGATTTATAGCTTTAATCTGCTCTACTGCAACATCAGAGAGAT
131 CCTGCTACAACTTCAGAGTATAGGATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGAT
* * * *
33460458 AGGATTCACTATTTTCAGTCTGATCCGCCGT
196 AAGATTCACTACTTTCAGTCTGCTCCGCTGT
** * *
33460489 AACTTTAGGGAGATAAGGTTAGTGGCTTTGATTTGTTCCACTGCAACTTCAGGGAGATAAGGTTA
1 AACTTTAGGGAGATAAGGTTAGTAACTTTAATTTGCTCCACTGCAACTTCAGGGAGATAAGGTTA
* * * * * *
33460554 GTGGCTTTGATTTGTTCCACTGCAACTTCAGGGAGATAAGGTTAG---TGGCTTTGATTTGTTCC
66 GTGGCTTCGATCTGTTCCACTGCAACTTCAGGGAGATAAGATTCGCCATGG--TAGATTTGATCC
* * * * * *
33460616 -A-CTG---CAACTTCAGGGAG-ATAAGATTCGCCATGATAGATTTGATCCGAC-CTGCTACAAC
129 GACCTGCTACAACTTCA--GAGTATAGGATT-----T-ATAGCTTTAATCTG-CTCTACTGCAAC
* * * ** *
33460674 TTCAGAG-GATAGGATTTA-TAGCTTT-AATCTGCTCTACTGC
185 TTCAGAGAGATAAGATTCACTA-CTTTCAGTCTGCTCCGCTGT
* * * * * * * * * * * *
33460714 AACATCAGAGAGAT-AGGATTCACT-ATTTTCAGTCTGATCCGCCGTAACTTTAGGGAGATAAGG
1 AACTTTAGGGAGATAAGG-TT-AGTAACTTT-AATTTGCTCCACTGCAACTTCAGGGAGATAAGG
* * *
33460777 TTAGTGGCTTCGATCTGCTT-CATTGCAACTTCAGGGAGATAAGATTCACCATGGTAGATTTGGT
63 TTAGTGGCTTCGATCTG-TTCCACTGCAACTTCAGGGAGATAAGATTCGCCATGGTAGATTTGAT
* * *
33460841 CTGACCTGCTACAACTTCAGAGGTATAGGATTTATAGCTTTAATCTGTTCTATTGCAACTTCAGA
127 CCGACCTGCTACAACTTCAGA-GTATAGGATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGA
*
33460906 GAGATAAGATTCGCTACTTTCAGT-TGTCTCCGCTGT
191 GAGATAAGATTCACTACTTTCAGTCTG-CTCCGCTGT
* * * ** *
33460942 AACTTTAGGAAGATACGACTT-GTAACTTTAACGTGCTCCACTGCAACTTCAGGAAGATAAGGTT
1 AACTTTAGGGAGATAAG-GTTAGTAACTTTAATTTGCTCCACTGCAACTTCAGGGAGATAAGGTT
* * * * *
33461006 AGTGGCTTCAATATGCTCCATTGCAACTTCAGGGAGATAAGATTCGCCATGGTAGATTTGATCTG
65 AGTGGCTTCGATCTGTTCCACTGCAACTTCAGGGAGATAAGATTCGCCATGGTAGATTTGATCCG
* *
33461071 ACCTGCTGCAA---C----T-T--GATTTATAGCTTTAATCTGCTCTACTGTAACTTCAGAGAGA
130 ACCTGCTACAACTTCAGAGTATAGGATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGA
* * *
33461126 TAAGATTCGCTATTTTCAGTCTGCTCCGCTAT
195 TAAGATTCACTACTTTCAGTCTGCTCCGCTGT
* * * * * * * *
33461158 AACTTCAGGGAGATACGACTT-GTAACTTCAACTTGCTCCACTGTAACTTTAGGGAGATACGGTT
1 AACTTTAGGGAGATAAG-GTTAGTAACTTTAATTTGCTCCACTGCAACTTCAGGGAGATAAGGTT
* * * *
33461222 AGTGGCTTCTATCTGCTCCACTGCAACTTTAGTGAGATAAGATTCGCCATGGTAGATTTGATCCG
65 AGTGGCTTCGATCTGTTCCACTGCAACTTCAGGGAGATAAGATTCGCCATGGTAGATTTGATCCG
*
33461287 ACCTGCTGCAACTTCAGAG
130 ACCTGCTACAACTTCAGAG
33461306 AGATAAGATT
Statistics
Matches: 670, Mismatches: 104, Indels: 89
0.78 0.12 0.10
Matches are distributed among these distances:
216 191 0.29
217 2 0.00
218 1 0.00
219 2 0.00
220 8 0.01
221 7 0.01
222 3 0.00
223 5 0.01
224 5 0.01
225 37 0.06
226 210 0.31
227 146 0.22
228 26 0.04
229 9 0.01
230 2 0.00
231 1 0.00
232 15 0.02
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.32
Consensus pattern (226 bp):
AACTTTAGGGAGATAAGGTTAGTAACTTTAATTTGCTCCACTGCAACTTCAGGGAGATAAGGTTA
GTGGCTTCGATCTGTTCCACTGCAACTTCAGGGAGATAAGATTCGCCATGGTAGATTTGATCCGA
CCTGCTACAACTTCAGAGTATAGGATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGAT
AAGATTCACTACTTTCAGTCTGCTCCGCTGT
Found at i:33460576 original size:270 final size:270
Alignment explanation
Indices: 33460028--33460819 Score: 1196
Period size: 270 Copynumber: 2.9 Consensus size: 270
33460018 TTCAACGTGC
* * * *
33460028 TCCACTGTAACTTCAGGGAGATAAGGTTAGTGGCTTTAATATGCTCCACTGCAACTTTAGGGAGA
1 TCCACTGCAACTTCAGGGAGATAAGGTTAGTGGCTTTGATATGTTCCACTGCAACTTCAGGGAGA
* * * * *
33460093 TAAGATTCGCCATGGTAGATTTCATCCGACCTGCTGCAACTTCAAAGGTATAGGATTTATAGCTA
66 TAAGATTCGCCATGATAGATTTGATCCGACCTGCTACAACTTCAGA-GTATAGGATTTATAGCTT
* * * * * * * *
33460158 TAATTTGCTCTACTGCAACTTCAGATAGATAAGATTCGCTATTTTCAATCT-ACTCCGCTGCAAC
130 TAATCTGCTCTACTGCAACATCAGAGAGATAGGATTCACTATTTTCAGTCTGA-TCCGCCGTAAC
* * ** ** * * * * *
33460222 TTCAGAGAGATACAACTT-GTAACTTCAACCTGCTCCACTACAACTTTAGGGAGATAAGGTTAGT
194 TTTAGGGAGATA-AGGTTAGTGGCTTCGATCTGTTCCACTGCAACTTCAGGGAGATAAGGTTAGT
33460286 GGCTTTGATTTGT
258 GGCTTTGATTTGT
* *
33460299 TCCACTGCAACTTCAGGGAGATAAGGTTAGTGG-TTTCGATCTGTTCCACTACAACTTCAGGGAG
1 TCCACTGCAACTTCAGGGAGATAAGGTTAGTGGCTTT-GATATGTTCCACTGCAACTTCAGGGAG
33460363 ATAAGATTCGCCATGATAGATTTGATCCGACCTGCTACAACTTCAGAGTATAGGATTTATAGCTT
65 ATAAGATTCGCCATGATAGATTTGATCCGACCTGCTACAACTTCAGAGTATAGGATTTATAGCTT
33460428 TAATCTGCTCTACTGCAACATCAGAGAGATAGGATTCACTATTTTCAGTCTGATCCGCCGTAACT
130 TAATCTGCTCTACTGCAACATCAGAGAGATAGGATTCACTATTTTCAGTCTGATCCGCCGTAACT
* *
33460493 TTAGGGAGATAAGGTTAGTGGCTTTGATTTGTTCCACTGCAACTTCAGGGAGATAAGGTTAGTGG
195 TTAGGGAGATAAGGTTAGTGGCTTCGATCTGTTCCACTGCAACTTCAGGGAGATAAGGTTAGTGG
33460558 CTTTGATTTGT
260 CTTTGATTTGT
*
33460569 TCCACTGCAACTTCAGGGAGATAAGGTTAGTGGCTTTGATTTGTTCCACTGCAACTTCAGGGAGA
1 TCCACTGCAACTTCAGGGAGATAAGGTTAGTGGCTTTGATATGTTCCACTGCAACTTCAGGGAGA
*
33460634 TAAGATTCGCCATGATAGATTTGATCCGACCTGCTACAACTTCAGAGGATAGGATTTATAGCTTT
66 TAAGATTCGCCATGATAGATTTGATCCGACCTGCTACAACTTCAGAGTATAGGATTTATAGCTTT
33460699 AATCTGCTCTACTGCAACATCAGAGAGATAGGATTCACTATTTTCAGTCTGATCCGCCGTAACTT
131 AATCTGCTCTACTGCAACATCAGAGAGATAGGATTCACTATTTTCAGTCTGATCCGCCGTAACTT
*
33460764 TAGGGAGATAAGGTTAGTGGCTTCGATCTGCTT-CATTGCAACTTCAGGGAGATAAG
196 TAGGGAGATAAGGTTAGTGGCTTCGATCTG-TTCCACTGCAACTTCAGGGAGATAAG
33460820 ATTCACCATG
Statistics
Matches: 478, Mismatches: 38, Indels: 11
0.91 0.07 0.02
Matches are distributed among these distances:
269 3 0.01
270 372 0.78
271 103 0.22
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.31
Consensus pattern (270 bp):
TCCACTGCAACTTCAGGGAGATAAGGTTAGTGGCTTTGATATGTTCCACTGCAACTTCAGGGAGA
TAAGATTCGCCATGATAGATTTGATCCGACCTGCTACAACTTCAGAGTATAGGATTTATAGCTTT
AATCTGCTCTACTGCAACATCAGAGAGATAGGATTCACTATTTTCAGTCTGATCCGCCGTAACTT
TAGGGAGATAAGGTTAGTGGCTTCGATCTGTTCCACTGCAACTTCAGGGAGATAAGGTTAGTGGC
TTTGATTTGT
Found at i:33460989 original size:183 final size:182
Alignment explanation
Indices: 33460613--33461002 Score: 525
Period size: 183 Copynumber: 2.1 Consensus size: 182
33460603 TTTGATTTGT
*
33460613 TCCACTGCAACTTCAGGGAGATAAGATTCGCCATGATAGATTTGATCCGACCTGCTACAACTTCA
1 TCCACTGCAACTTCAGGGAGATAAGATTCACCATGATAGATTTGATCCGACCTGCTACAACTTCA
* *
33460678 GAGGATAGGATTTATAGCTTTAATCTGCTCTACTGCAACATCAGAGAGATAGGATTCACTATTTT
66 GAGGATAGGATTTATAGCTTTAATCTGCTCTACTGCAACATCAGAGAGATAAGATTCACTACTTT
* * ** *
33460743 CAGTCTGATCCGCCGTAACTTTAGGGAGATAAGGTTAGTGGCTTCGATCTGC
131 CAGTCTGATCCGCCGTAACTTTAGGAAGATAAGCTTAGTAACTTCGAACTGC
* * * * *
33460795 TTCATTGCAACTTCAGGGAGATAAGATTCACCATGGTAGATTTGGTCTGACCTGCTACAACTTCA
1 TCCACTGCAACTTCAGGGAGATAAGATTCACCATGATAGATTTGATCCGACCTGCTACAACTTCA
* * * *
33460860 GAGGTATAGGATTTATAGCTTTAATCTGTTCTATTGCAACTTCAGAGAGATAAGATTCGCTACTT
66 GAGG-ATAGGATTTATAGCTTTAATCTGCTCTACTGCAACATCAGAGAGATAAGATTCACTACTT
* * * *
33460925 TCAGT-TGTCTCCGCTGTAACTTTAGGAAGATACGACTT-GTAACTT-TAACGTGC
130 TCAGTCTG-ATCCGCCGTAACTTTAGGAAGATAAG-CTTAGTAACTTCGAAC-TGC
*
33460978 TCCACTGCAACTTCAGGAAGATAAG
1 TCCACTGCAACTTCAGGGAGATAAG
33461003 GTTAGTGGCT
Statistics
Matches: 180, Mismatches: 24, Indels: 7
0.85 0.11 0.03
Matches are distributed among these distances:
182 67 0.37
183 111 0.62
184 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (182 bp):
TCCACTGCAACTTCAGGGAGATAAGATTCACCATGATAGATTTGATCCGACCTGCTACAACTTCA
GAGGATAGGATTTATAGCTTTAATCTGCTCTACTGCAACATCAGAGAGATAAGATTCACTACTTT
CAGTCTGATCCGCCGTAACTTTAGGAAGATAAGCTTAGTAACTTCGAACTGC
Found at i:33461164 original size:45 final size:45
Alignment explanation
Indices: 33461100--33461451 Score: 162
Period size: 44 Copynumber: 7.6 Consensus size: 45
33461090 ATAGCTTTAA
**
33461100 TCTGCTCTACTGTAACTTCAGAGAGATAAGATTCGCTATTTTCAG
1 TCTGCTCCGCTGTAACTTCAGAGAGATAAGATTCGCTATTTTCAG
* * * **
33461145 TCTGCTCCGCTATAACTTCAGGGAGATACGACTT-G-TAACTTCA-
1 TCTGCTCCGCTGTAACTTCAGAGAGATAAGA-TTCGCTATTTTCAG
* * * * * * * ***
33461188 ACTTGCTCCACTGTAACTTTAGGGAGATACGGTTAG-TGGCTTCTA-
1 TC-TGCTCCGCTGTAACTTCAGAGAGATAAGATTCGCTATTTTC-AG
* * * * * **
33461233 TCTGCTCCACTGCAACTTTAGTGAGATAAGATTCGCCATGGT-AG
1 TCTGCTCCGCTGTAACTTCAGAGAGATAAGATTCGCTATTTTCAG
* *
33461277 ATTTGATCCGACCTGCTGCAACTTCAGAGAGATAAGATTCGCTATTTTCAG
1 -TCTGCTCCG--CTG-T--AACTTCAGAGAGATAAGATTCGCTATTTTCAG
* * ** * *
33461328 TCTTCTCCGCTGCAACTTTCAACTTCAGAG-GTATAGGATT-TATATTTTTAA
1 TCTGCTCCGCTG------T-AACTTCAGAGAG-ATAAGATTCGCTATTTTCAG
* * *
33461379 TTTGCTCTGCTGTAACTTCAAAGAGATAAGATTCGCTATTTTCAG
1 TCTGCTCCGCTGTAACTTCAGAGAGATAAGATTCGCTATTTTCAG
* *
33461424 TCTGCTCCGCTGCAACTTCAGGGAGATA
1 TCTGCTCCGCTGTAACTTCAGAGAGATA
33461452 CGACTTGTAA
Statistics
Matches: 229, Mismatches: 57, Indels: 42
0.70 0.17 0.13
Matches are distributed among these distances:
43 4 0.02
44 81 0.35
45 68 0.30
46 2 0.01
47 3 0.01
48 3 0.01
50 30 0.13
51 19 0.08
52 18 0.08
53 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.34
Consensus pattern (45 bp):
TCTGCTCCGCTGTAACTTCAGAGAGATAAGATTCGCTATTTTCAG
Found at i:33461249 original size:216 final size:216
Alignment explanation
Indices: 33460869--33461300 Score: 677
Period size: 216 Copynumber: 2.0 Consensus size: 216
33460859 AGAGGTATAG
* *
33460869 GATTTATAGCTTTAATCTGTTCTATTGCAACTTCAGAGAGATAAGATTCGCTACTTTCAGTTGTC
1 GATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTCGCTACTTTCAGTTGTC
* * *
33460934 TCCGCTGTAACTTTAGGAAGATACGACTTGTAACTTTAACGTGCTCCACTGCAACTTCAGGAAGA
66 TCCGCTATAACTTCAGGAAGATACGACTTGTAACTTCAACGTGCTCCACTGCAACTTCAGGAAGA
*
33460999 TAAGGTTAGTGGCTTCAATATGCTCCATTGCAACTTCAGGGAGATAAGATTCGCCATGGTAGATT
131 TAAGGTTAGTGGCTTCAATATGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATGGTAGATT
*
33461064 TGATCTGACCTGCTGCAACTT
196 TGATCCGACCTGCTGCAACTT
* *
33461085 GATTTATAGCTTTAATCTGCTCTACTGTAACTTCAGAGAGATAAGATTCGCTATTTTCAGTCTG-
1 GATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTCGCTACTTTCAGT-TGT
* * * * *
33461149 CTCCGCTATAACTTCAGGGAGATACGACTTGTAACTTCAACTTGCTCCACTGTAACTTTAGGGAG
65 CTCCGCTATAACTTCAGGAAGATACGACTTGTAACTTCAACGTGCTCCACTGCAACTTCAGGAAG
* * * * *
33461214 ATACGGTTAGTGGCTTCTATCTGCTCCACTGCAACTTTAGTGAGATAAGATTCGCCATGGTAGAT
130 ATAAGGTTAGTGGCTTCAATATGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATGGTAGAT
33461279 TTGATCCGACCTGCTGCAACTT
195 TTGATCCGACCTGCTGCAACTT
33461301 CAGAGAGATA
Statistics
Matches: 196, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
216 194 0.99
217 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (216 bp):
GATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTCGCTACTTTCAGTTGTC
TCCGCTATAACTTCAGGAAGATACGACTTGTAACTTCAACGTGCTCCACTGCAACTTCAGGAAGA
TAAGGTTAGTGGCTTCAATATGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATGGTAGATT
TGATCCGACCTGCTGCAACTT
Found at i:33461538 original size:133 final size:132
Alignment explanation
Indices: 33461099--33461547 Score: 386
Period size: 133 Copynumber: 3.3 Consensus size: 132
33461089 TATAGCTTTA
* **
33461099 ATCTGCTCTACTGTAACTTCAGAGAGATAAGATTCGCTATTTTCAGTCTGCTCCGCTATAACTTC
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATTCGCTATTTTCAGTCTGCTCCGCTGCAACTTC
* *
33461164 AGGGAGATACGACTTGTAACTTCAA-CTTGCTCCACTGTAACTTTAGGGAGATACGGTTAGTGGC
66 AGGGAGATACGACTTGTAACTTCAACCTT--TCCACTGCAACTTTAGGGAGATAAGGTTAGTGGC
33461228 TTCT
129 TTCT
* * * * ** * *
33461232 ATCTGCTCCACTGCAACTTTAGTGAGATAAGATTCGCCATGGT-AGATTTGATCCGACCTGCTGC
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATTCGCTATTTTCAG-TCTG---C-TCC-GCTGC
* * ** ** * ** *
33461296 AACTTCAGAGAGATAAGA-TTCGCTATTTTCAGTCTTCTCCGCTGCAACTTTCAACTTCAGAGGT
60 AACTTCAGGGAGATACGACTT-G-TAACTTCAACCTT-TCCACTGCAACTTT--A---GGGAGAT
** *
33461360 ATAGGATTTA-T-ATTTTT
117 A-AGG--TTAGTGGCTTCT
* * * *
33461377 AATTTGCTCTGCTGTAACTTCAAAGAGATAAGATTCGCTATTTTCAGTCTGCTCCGCTGCAACTT
1 -ATCTGCTCTACTGCAACTTCAGAGAGATAAGATTCGCTATTTTCAGTCTGCTCCGCTGCAACTT
33461442 CAGGGAGATACGACTTGTAACTTCAACCTATTCCACTGCAACTTTAGGGAGATAAGGTTAGTGGC
65 CAGGGAGATACGACTTGTAACTTCAACCT-TTCCACTGCAACTTTAGGGAGATAAGGTTAGTGGC
33461507 TTCT
129 TTCT
* *
33461511 ATCTGCTCTACTGCAACTTTAGTGAGATAAGATTCGC
1 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATTCGC
33461548 CATGGTAGAT
Statistics
Matches: 237, Mismatches: 56, Indels: 46
0.70 0.17 0.14
Matches are distributed among these distances:
132 5 0.02
133 71 0.30
134 6 0.03
135 5 0.02
136 1 0.00
137 4 0.02
138 21 0.09
139 19 0.08
140 24 0.10
141 24 0.10
142 4 0.02
143 1 0.00
144 5 0.02
145 5 0.02
146 37 0.16
147 5 0.02
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.33
Consensus pattern (132 bp):
ATCTGCTCTACTGCAACTTCAGAGAGATAAGATTCGCTATTTTCAGTCTGCTCCGCTGCAACTTC
AGGGAGATACGACTTGTAACTTCAACCTTTCCACTGCAACTTTAGGGAGATAAGGTTAGTGGCTT
CT
Found at i:33461593 original size:279 final size:279
Alignment explanation
Indices: 33461085--33461594 Score: 887
Period size: 279 Copynumber: 1.8 Consensus size: 279
33461075 GCTGCAACTT
*
33461085 GATTTATAGCTTTAATCTGCTCTACTGTAACTTCAGAGAGATAAGATTCGCTATTTTCAGTCTGC
1 GATTTATAGCTTTAATCTGCTCTACTGTAACTTCAAAGAGATAAGATTCGCTATTTTCAGTCTGC
* * * *
33461150 TCCGCTATAACTTCAGGGAGATACGACTTGTAACTTCAACTTGCTCCACTGTAACTTTAGGGAGA
66 TCCGCTACAACTTCAGGGAGATACGACTTGTAACTTCAACCTACTCCACTGCAACTTTAGGGAGA
*
33461215 TACGGTTAGTGGCTTCTATCTGCTCCACTGCAACTTTAGTGAGATAAGATTCGCCATGGTAGATT
131 TAAGGTTAGTGGCTTCTATCTGCTCCACTGCAACTTTAGTGAGATAAGATTCGCCATGGTAGATT
33461280 TGATCCGACCTGCTGCAACTTCAGAGAGATAAGATTCGCTATTTTCAGTCTTCTCCGCTGCAACT
196 TGATCCGACCTGCTGCAACTTCAGAGAGATAAGATTCGCTATTTTCAGTCTTCTCCGCTGCAACT
33461345 TTCAACTTCAGAGGTATAG
261 TTCAACTTCAGAGGTATAG
** * *
33461364 GATTTATATTTTTAATTTGCTCTGCTGTAACTTCAAAGAGATAAGATTCGCTATTTTCAGTCTGC
1 GATTTATAGCTTTAATCTGCTCTACTGTAACTTCAAAGAGATAAGATTCGCTATTTTCAGTCTGC
* *
33461429 TCCGCTGCAACTTCAGGGAGATACGACTTGTAACTTCAACCTATTCCACTGCAACTTTAGGGAGA
66 TCCGCTACAACTTCAGGGAGATACGACTTGTAACTTCAACCTACTCCACTGCAACTTTAGGGAGA
*
33461494 TAAGGTTAGTGGCTTCTATCTGCTCTACTGCAACTTTAGTGAGATAAGATTCGCCATGGTAGATT
131 TAAGGTTAGTGGCTTCTATCTGCTCCACTGCAACTTTAGTGAGATAAGATTCGCCATGGTAGATT
33461559 TGATCCGACCTGCTGCAACTTCAGAG-GTATAAGATT
196 TGATCCGACCTGCTGCAACTTCAGAGAG-ATAAGATT
33461595 TATAGCTTTA
Statistics
Matches: 217, Mismatches: 13, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
278 1 0.00
279 216 1.00
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (279 bp):
GATTTATAGCTTTAATCTGCTCTACTGTAACTTCAAAGAGATAAGATTCGCTATTTTCAGTCTGC
TCCGCTACAACTTCAGGGAGATACGACTTGTAACTTCAACCTACTCCACTGCAACTTTAGGGAGA
TAAGGTTAGTGGCTTCTATCTGCTCCACTGCAACTTTAGTGAGATAAGATTCGCCATGGTAGATT
TGATCCGACCTGCTGCAACTTCAGAGAGATAAGATTCGCTATTTTCAGTCTTCTCCGCTGCAACT
TTCAACTTCAGAGGTATAG
Found at i:33461633 original size:227 final size:227
Alignment explanation
Indices: 33461347--33462927 Score: 2218
Period size: 227 Copynumber: 7.0 Consensus size: 227
33461337 CTGCAACTTT
** * * * *
33461347 CAACTTCAGAGGTATAGGATTTATATTTTTAATTTGCTCTGCTGTAACTTCAAAGAGATAAGATT
1 CAACTTCAGAGGTATAGGATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATT
**
33461412 CGCTATTTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATACGACTTGTAACTTCAACCTATTCCA
66 CGCTATTTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATACGACTTGTAACTTCAACCTGCTCCA
* * *
33461477 CTGCAACTTTAGGGAGATAAGGTTAGTGGCTTCTATCTGCTCTACTGCAACTTTAGTGAGATAAG
131 CTGCAACTTTAGGGAGATAAGGTTAGTGGCTTCTATCTGCTCCACTGCAACTTCAGGGAGATAAG
*
33461542 ATTCGCCATGGTAGATTTGATCCGACCTGCTG
196 ATTCGCCATGGTAGATTTGATCCAACCTGCTG
* *
33461574 CAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCTCTACT-CTAACTTCAGAGAGATAGGAT
1 CAACTTCAGAGGTATAGGATTTATAGCTTTAATCTGCTCTACTGC-AACTTCAGAGAGATAAGAT
* * * * * * *
33461638 TCGCTATTTTTAGT-TGTCTCTGCTGTAACTTTAGGAAGATACGACTTGTAACTTTAACGTGCTC
65 TCGCTATTTTCAGTCTG-CTCCGCTGCAACTTCAGGGAGATACGACTTGTAACTTCAACCTGCTC
* * * * *
33461702 CACTGCAACTTCAGGAAGATAAGGTTAGTGGCTTCAATATGCTCCATTGCAACTTCAGGGAGATA
129 CACTGCAACTTTAGGGAGATAAGGTTAGTGGCTTCTATCTGCTCCACTGCAACTTCAGGGAGATA
* *
33461767 AGATTTGCCATAGTAGATTTGATCCAACCTGCTG
194 AGATTCGCCATGGTAGATTTGATCCAACCTGCTG
* * *
33461801 TAACTTCAGAGGTATAGGATTTATAGCTTTAATCTGTTCTATTGCAACTTCAGAGAGATAAGATT
1 CAACTTCAGAGGTATAGGATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATT
* * * * * *
33461866 CGCTACTTTCAGT-TGTCTCCGCTGTAACTTTAGGAAGATACGACTTGTAACTTTAACGTGCTCC
66 CGCTATTTTCAGTCTG-CTCCGCTGCAACTTCAGGGAGATACGACTTGTAACTTCAACCTGCTCC
* * * * *
33461930 ACTGCAACTTCAGGAAGATAAGGTTAGTGGCTTCAATATGCTCCATTGCAACTTCAGGGAGATAA
130 ACTGCAACTTTAGGGAGATAAGGTTAGTGGCTTCTATCTGCTCCACTGCAACTTCAGGGAGATAA
* *
33461995 GATTTGCCATAGTAGATTTGATCCAACCTGCTG
195 GATTCGCCATGGTAGATTTGATCCAACCTGCTG
* * *
33462028 TAACTTCAGAGGTATAGGATTTATAGCTTTAATCTGTTCTATTGCAACTTCAGAGAGATAAGATT
1 CAACTTCAGAGGTATAGGATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATT
* * * *
33462093 CGCTATTTTCAGTCTTCTCCGCTGCAACTTTAAGGAGATACGACTTGTAACTTCAACCTGCTACA
66 CGCTATTTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATACGACTTGTAACTTCAACCTGCTCCA
* * *
33462158 CTGCAACTTTAGGGAGATAAGGTTAGTGGCTTCGATCTGCTTCATTGCAACTTCAGGGAGATAAG
131 CTGCAACTTTAGGGAGATAAGGTTAGTGGCTTCTATCTGCTCCACTGCAACTTCAGGGAGATAAG
* *
33462223 ATTTGCCATAGTAGATTTGATCCAACCTGCTG
196 ATTCGCCATGGTAGATTTGATCCAACCTGCTG
* *
33462255 TAACTTCAGAGGTATAGGATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAAATAAGATT
1 CAACTTCAGAGGTATAGGATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATT
* * ** ** *
33462320 CGTTATTTTCAGTC-GTCTCCGCTACAACTTCAGAAAGATACGACTTGTAACTTCAAAGTGTTCC
66 CGCTATTTTCAGTCTG-CTCCGCTGCAACTTCAGGGAGATACGACTTGTAACTTCAACCTGCTCC
* * * *
33462384 ACTGTAACTTGAGGGAGATAAGGTTAATGGCTT-TAATTTGCTCCACTGCAACTTCAGGGAGATA
130 ACTGCAACTTTAGGGAGATAAGGTTAGTGGCTTCT-ATCTGCTCCACTGCAACTTCAGGGAGATA
* * *
33462448 AGATTCGCCATGGTAAATTTGATCCGACATGCTG
194 AGATTCGCCATGGTAGATTTGATCCAACCTGCTG
** * * * *
33462482 CAACTTCAGAGGTATAGGATTTATATTTTTAATTTGCTCTGCTGTAACTTCAAAGAGATAAGATT
1 CAACTTCAGAGGTATAGGATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATT
**
33462547 CGCTATTTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATACGACTTGTAACTTCAACCTATTCCA
66 CGCTATTTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATACGACTTGTAACTTCAACCTGCTCCA
* * *
33462612 CTGCAACTTTAGGGAGATAAGGTTAGTGGCTTCTATCTGCTCTACTGCAACTTTAGTGAGATAAG
131 CTGCAACTTTAGGGAGATAAGGTTAGTGGCTTCTATCTGCTCCACTGCAACTTCAGGGAGATAAG
*
33462677 ATTCGCCATGGTAGATTTGATCCGACCTGCTG
196 ATTCGCCATGGTAGATTTGATCCAACCTGCTG
* * * *
33462709 CAACTTCAGAGGTATAAGATTTATAGCTTTAATCTACTCTGCTGCAACTTCAGAGAGATAATATT
1 CAACTTCAGAGGTATAGGATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATT
* * * *
33462774 CGCTATTTTTAGTCTTCTCCGCTGCAACTTCAAGGAGATACGACTTGTAACTTCAACCTGCTACA
66 CGCTATTTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATACGACTTGTAACTTCAACCTGCTCCA
* * * *
33462839 CTGCAACTTTAGGGAGATAAGGTTAGTGGCTTCGATCTGCTCCACTGTAACTTTAAGGAGATAAG
131 CTGCAACTTTAGGGAGATAAGGTTAGTGGCTTCTATCTGCTCCACTGCAACTTCAGGGAGATAAG
33462904 ATTCGCCATGGTAGATTTGATCCA
196 ATTCGCCATGGTAGATTTGATCCA
33462928 TTGCTACCTC
Statistics
Matches: 1227, Mismatches: 119, Indels: 16
0.90 0.09 0.01
Matches are distributed among these distances:
226 2 0.00
227 1221 1.00
228 4 0.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.33
Consensus pattern (227 bp):
CAACTTCAGAGGTATAGGATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATT
CGCTATTTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATACGACTTGTAACTTCAACCTGCTCCA
CTGCAACTTTAGGGAGATAAGGTTAGTGGCTTCTATCTGCTCCACTGCAACTTCAGGGAGATAAG
ATTCGCCATGGTAGATTTGATCCAACCTGCTG
Found at i:33468139 original size:29 final size:28
Alignment explanation
Indices: 33468090--33468147 Score: 66
Period size: 29 Copynumber: 2.0 Consensus size: 28
33468080 TTTTAATATC
33468090 ATTTATAAAAAAAATAAAATACATATAAAT
1 ATTTATAAAAAAAATAAAATA-AT-TAAAT
*
33468120 ATTT-TAAAAATAAAT-GAATAATTAAAT
1 ATTTATAAAAA-AAATAAAATAATTAAAT
33468147 A
1 A
33468148 ATATTTTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
27 6 0.23
28 2 0.08
29 10 0.38
30 8 0.31
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.33
Consensus pattern (28 bp):
ATTTATAAAAAAAATAAAATAATTAAAT
Found at i:33470109 original size:15 final size:14
Alignment explanation
Indices: 33470078--33470119 Score: 50
Period size: 15 Copynumber: 3.0 Consensus size: 14
33470068 TTGCTAAATT
33470078 ATTT-ATTTATTTA
1 ATTTGATTTATTTA
*
33470091 ATTTGATTTGATTTC
1 ATTTGATTT-ATTTA
*
33470106 ATTTGATTTTTTTA
1 ATTTGATTTATTTA
33470120 TCTTAATTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
13 4 0.17
14 7 0.29
15 13 0.54
ACGTcount: A:0.24, C:0.02, G:0.07, T:0.67
Consensus pattern (14 bp):
ATTTGATTTATTTA
Found at i:33470701 original size:14 final size:16
Alignment explanation
Indices: 33470672--33470706 Score: 56
Period size: 14 Copynumber: 2.3 Consensus size: 16
33470662 AATTAGTCGG
33470672 TAAAAGTAATAATAAA
1 TAAAAGTAATAATAAA
33470688 TAAAA-TAA-AATAAA
1 TAAAAGTAATAATAAA
33470702 TAAAA
1 TAAAA
33470707 AGAATCCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 11 0.58
15 3 0.16
16 5 0.26
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (16 bp):
TAAAAGTAATAATAAA
Found at i:33485241 original size:43 final size:43
Alignment explanation
Indices: 33485180--33485910 Score: 1444
Period size: 43 Copynumber: 17.0 Consensus size: 43
33485170 TATGGGCTAA
33485180 AATAGGTGTTCGCGGTTGTGAGATTGGCACTAAGTGTGCGGGC
1 AATAGGTGTTCGCGGTTGTGAGATTGGCACTAAGTGTGCGGGC
33485223 AATAGGTGTTCGCGGTTGTGAGATTGGCACTAAGTGTGCGGGC
1 AATAGGTGTTCGCGGTTGTGAGATTGGCACTAAGTGTGCGGGC
33485266 AATAGGTGTTCGCGGTTGTGAGATTGGCACTAAGTGTGCGGGC
1 AATAGGTGTTCGCGGTTGTGAGATTGGCACTAAGTGTGCGGGC
33485309 AATAGGTGTTCGCGGTTGTGAGATTGGCACTAAGTGTGCGGGC
1 AATAGGTGTTCGCGGTTGTGAGATTGGCACTAAGTGTGCGGGC
33485352 AATAGGTGTTCGCGGTTGTGAGATTGGCACTAAGTGTGCGGGC
1 AATAGGTGTTCGCGGTTGTGAGATTGGCACTAAGTGTGCGGGC
33485395 AATAGGTGTTCGCGGTTGTGAGATTGGCACTAAGTGTGCGGGC
1 AATAGGTGTTCGCGGTTGTGAGATTGGCACTAAGTGTGCGGGC
33485438 AATAGGTGTTCGCGGTTGTGAGATTGGCACTAAGTGTGCGGGC
1 AATAGGTGTTCGCGGTTGTGAGATTGGCACTAAGTGTGCGGGC
33485481 AATAGGTGTTCGCGGTTGTGAGATTGGCACTAAGTGTGCGGGC
1 AATAGGTGTTCGCGGTTGTGAGATTGGCACTAAGTGTGCGGGC
33485524 AATAGGTGTTCGCGGTTGTGAGATTGGCACTAAGTGTGCGGGC
1 AATAGGTGTTCGCGGTTGTGAGATTGGCACTAAGTGTGCGGGC
33485567 AATAGGTGTTCGCGGTTGTGAGATTGGCACTAAGTGTGCGGGC
1 AATAGGTGTTCGCGGTTGTGAGATTGGCACTAAGTGTGCGGGC
33485610 AATAGGTGTTCGCGGTTGTGAGATTGGCACTAAGTGTGCGGGC
1 AATAGGTGTTCGCGGTTGTGAGATTGGCACTAAGTGTGCGGGC
33485653 AATAGGTGTTCGCGGTTGTGAGATTGGCACTAAGTGTGCGGGC
1 AATAGGTGTTCGCGGTTGTGAGATTGGCACTAAGTGTGCGGGC
33485696 AATAGGTGTTCGCGGTTGTGAGATTGGCACTAAGTGTGCGGGC
1 AATAGGTGTTCGCGGTTGTGAGATTGGCACTAAGTGTGCGGGC
33485739 AATAGGTGTTCGCGGTTGTGAGATTGGCACTAAGTGTGCGGGC
1 AATAGGTGTTCGCGGTTGTGAGATTGGCACTAAGTGTGCGGGC
33485782 AATAGGTGTTCGCGGTTGTGAGATTGGCACTAAGTGTGCGGGC
1 AATAGGTGTTCGCGGTTGTGAGATTGGCACTAAGTGTGCGGGC
33485825 AATAGGTGTTCGCGGTTGTGAGATTGGCACTAAGTGTGCGGGC
1 AATAGGTGTTCGCGGTTGTGAGATTGGCACTAAGTGTGCGGGC
* *
33485868 AATAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCGGGC
1 AATAGGTGTTCGCGGTTGTGAGATTGGCACTAAGTGTGCGGGC
33485911 TTGAAATGCA
Statistics
Matches: 686, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 686 1.00
ACGTcount: A:0.19, C:0.14, G:0.39, T:0.28
Consensus pattern (43 bp):
AATAGGTGTTCGCGGTTGTGAGATTGGCACTAAGTGTGCGGGC
Found at i:33485930 original size:29 final size:29
Alignment explanation
Indices: 33485895--33485965 Score: 90
Period size: 29 Copynumber: 2.4 Consensus size: 29
33485885 GTGAGATTGG
* *
33485895 CACTAAGTGTGCGGGCTTGAAA-TGCATGA
1 CACTAAGTGTGCGAG-TTGAAAGTACATGA
* *
33485924 CACTAAGTGTGCGAGTTTAAAGTACATGG
1 CACTAAGTGTGCGAGTTGAAAGTACATGA
33485953 CACTAAGTGTGCG
1 CACTAAGTGTGCG
33485966 TGGTTGATTA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 5 0.14
29 32 0.86
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (29 bp):
CACTAAGTGTGCGAGTTGAAAGTACATGA
Found at i:33486399 original size:40 final size:40
Alignment explanation
Indices: 33486276--33486511 Score: 226
Period size: 40 Copynumber: 5.9 Consensus size: 40
33486266 TTGAATGATG
** *
33486276 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* * ** * * *
33486316 TCCGGACTAAGACCCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TATA
*
33486356 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
33486396 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* ** * * *
33486436 TCCGTGCTAAACCCCGAAGAGCATTCATGCTGGTGTTATG
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
33486476 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
33486512 CGTGTATTCG
Statistics
Matches: 162, Mismatches: 32, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
40 144 0.89
41 18 0.11
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:33490302 original size:147 final size:147
Alignment explanation
Indices: 33490035--33490329 Score: 527
Period size: 147 Copynumber: 2.0 Consensus size: 147
33490025 GCCAAGAGAG
* * *
33490035 TGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGACTGTGAAAGTGTATATATGTAATAAGG
1 TGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGG
*
33490100 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTG
66 CCTAATAGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTG
33490165 ATGAACGTGAAAGTGTA
131 ATGAACGTGAAAGTGTA
* *
33490182 TGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGG
1 TGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGG
33490247 CCTAATAGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTG
66 CCTAATAGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTG
*
33490312 ATGAATGTGAAAGTGTA
131 ATGAACGTGAAAGTGTA
33490329 T
1 T
33490330 ATATGTGACA
Statistics
Matches: 141, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
147 141 1.00
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.31
Consensus pattern (147 bp):
TGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGG
CCTAATAGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTG
ATGAACGTGAAAGTGTA
Found at i:33490352 original size:47 final size:47
Alignment explanation
Indices: 33490033--33490388 Score: 469
Period size: 47 Copynumber: 7.4 Consensus size: 47
33490023 CAGCCAAGAG
* * *
33490033 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGACTGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
33490080 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
33490127 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAACGTGAA
1 AGTGTA--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
33490176 AGTGTATGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
33490227 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
33490274 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTA--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * * *
33490323 AGTGTATATATGTGACAGGGCCGAGTGGCCCACGTAATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
33490370 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
33490389 TCCCGAAAGG
Statistics
Matches: 276, Mismatches: 25, Indels: 16
0.87 0.08 0.05
Matches are distributed among these distances:
47 146 0.53
49 86 0.31
51 40 0.14
53 4 0.01
ACGTcount: A:0.32, C:0.10, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:33490367 original size:96 final size:96
Alignment explanation
Indices: 33490033--33490373 Score: 488
Period size: 96 Copynumber: 3.5 Consensus size: 96
33490023 CAGCCAAGAG
* * *
33490033 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGACTGTGAAAGTGTA--TATATGTAAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTAAT
33490096 AAGGCCTAATGGCCGATGTGATGAATGTGAA
66 AAGGCCTAATGGCCGATGTGATGAATGTGAA
*
33490127 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATGTATATATG
1 AGTGTA--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATG--TATATG
*
33490192 TAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
62 TAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
33490227 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTAAT
33490292 AAGGCCTAATGGCCGATGTGATGAATGTGAA
66 AAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * * *
33490323 AGTGTATATATGTGACAGGGCCGAGTGGCCCACGTAATGGATGTGAAAGTG
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
33490374 CATAAATGTG
Statistics
Matches: 221, Mismatches: 20, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
94 6 0.03
96 123 0.56
98 46 0.21
100 46 0.21
ACGTcount: A:0.31, C:0.10, G:0.30, T:0.29
Consensus pattern (96 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTAAT
AAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:33490563 original size:37 final size:37
Alignment explanation
Indices: 33490507--33490585 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
33490497 CCGAGCTCTA
* * *
33490507 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
33490544 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
33490581 AAGAC
1 AAGAC
33490586 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:33492560 original size:26 final size:26
Alignment explanation
Indices: 33492524--33492577 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
33492514 TTTACATCTA
33492524 ACTGCTCAAGCTCCAAACCATGCATG
1 ACTGCTCAAGCTCCAAACCATGCATG
33492550 ACTGCTCAAGCTCCAAACCATGCATG
1 ACTGCTCAAGCTCCAAACCATGCATG
33492576 AC
1 AC
33492578 CATAATACCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.31, C:0.35, G:0.15, T:0.19
Consensus pattern (26 bp):
ACTGCTCAAGCTCCAAACCATGCATG
Found at i:33497201 original size:65 final size:65
Alignment explanation
Indices: 33497097--33497226 Score: 251
Period size: 65 Copynumber: 2.0 Consensus size: 65
33497087 TATTATTTAC
33497097 GTTGAGATTTGGGTTTTTAAATGTAATAAAGCCGCTTAATTATTTTTGATGGTTATAATATGTGT
1 GTTGAGATTTGGGTTTTTAAATGTAATAAAGCCGCTTAATTATTTTTGATGGTTATAATATGTGT
*
33497162 GTTGAGGTTTGGGTTTTTAAATGTAATAAAGCCGCTTAATTATTTTTGATGGTTATAATATGTGT
1 GTTGAGATTTGGGTTTTTAAATGTAATAAAGCCGCTTAATTATTTTTGATGGTTATAATATGTGT
33497227 TACTAAGATA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.27, C:0.05, G:0.22, T:0.46
Consensus pattern (65 bp):
GTTGAGATTTGGGTTTTTAAATGTAATAAAGCCGCTTAATTATTTTTGATGGTTATAATATGTGT
Found at i:33500310 original size:19 final size:20
Alignment explanation
Indices: 33500260--33500302 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
33500250 AAAAGCTAGA
*
33500260 AAAAACTAAAA-ATTTAAAT
1 AAAAACTAAAATAATTAAAT
33500279 AAAAACTAAAATAATTAAA-
1 AAAAACTAAAATAATTAAAT
33500298 AAAAA
1 AAAAA
33500303 GTTAAATAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (20 bp):
AAAAACTAAAATAATTAAAT
Found at i:33503259 original size:25 final size:27
Alignment explanation
Indices: 33503222--33503275 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
33503212 TCAAACATGC
33503222 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
* **
33503248 ATTTCGGT-AATTTTGCACCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
33503274 AT
1 AT
33503276 AACAGTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACACCTAGGGGT
Found at i:33503283 original size:26 final size:27
Alignment explanation
Indices: 33503239--33503314 Score: 82
Period size: 26 Copynumber: 2.8 Consensus size: 27
33503229 TCAATTTAAC
* * *
33503239 CCTAGGGGTATTTCGGTAATTTTGC-A
1 CCTAGGGGTATTACAGTAATTTTCCAA
*
33503265 CCTAGGGGTATAACAGTAATTTTCCATA
1 CCTAGGGGTATTACAGTAATTTTCCA-A
* *
33503293 CATAGGGGTATTATAGTAATTT
1 CCTAGGGGTATTACAGTAATTT
33503315 AGCTGCTTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 21 0.51
28 20 0.49
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37
Consensus pattern (27 bp):
CCTAGGGGTATTACAGTAATTTTCCAA
Found at i:33504782 original size:26 final size:26
Alignment explanation
Indices: 33504752--33505587 Score: 1474
Period size: 26 Copynumber: 32.2 Consensus size: 26
33504742 TGAAATTCCC
*
33504752 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
33504778 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
33504804 ATCATGAAACATTTACCTAACCCGTT
1 ATCATGAAACATTTACCTAACCCATT
33504830 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
33504856 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
33504882 ATCATGAAACATTTACCTAACCCGTT
1 ATCATGAAACATTTACCTAACCCATT
33504908 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
33504934 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
33504960 ATCATGAAACATTTACCTAACCCGTT
1 ATCATGAAACATTTACCTAACCCATT
33504986 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
33505012 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
33505038 ATCATGAAACATTTACCTAACCCGTT
1 ATCATGAAACATTTACCTAACCCATT
33505064 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
33505090 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
33505116 ATCATGAAACATTTACCTAACCCGTT
1 ATCATGAAACATTTACCTAACCCATT
33505142 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
33505168 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
33505194 ATCATGAAACATTTACCTAACCCGTT
1 ATCATGAAACATTTACCTAACCCATT
33505220 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
33505246 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
33505272 ATCATGAAACATTTACCTAACCCGTT
1 ATCATGAAACATTTACCTAACCCATT
33505298 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
33505324 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
33505350 ATCATGAAACATTTACCTAACCCGTT
1 ATCATGAAACATTTACCTAACCCATT
33505376 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
33505402 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
33505428 ATCATGAAACATTTACCTAACCCGTT
1 ATCATGAAACATTTACCTAACCCATT
33505454 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
33505480 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
33505506 ATCATGAAACATTTACCTAACCCGTT
1 ATCATGAAACATTTACCTAACCCATT
33505532 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
33505558 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
33505584 ATCA
1 ATCA
33505588 ATTTGTATCA
Statistics
Matches: 770, Mismatches: 40, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 770 1.00
ACGTcount: A:0.36, C:0.27, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGAAACATTTACCTAACCCATT
Found at i:33504881 original size:78 final size:78
Alignment explanation
Indices: 33504752--33505587 Score: 1663
Period size: 78 Copynumber: 10.7 Consensus size: 78
33504742 TGAAATTCCC
*
33504752 ATCATGGAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCATGAAACATT
1 ATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCATGAAACATT
33504817 TACCTAACCCGTT
66 TACCTAACCCGTT
33504830 ATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCATGAAACATT
1 ATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCATGAAACATT
33504895 TACCTAACCCGTT
66 TACCTAACCCGTT
33504908 ATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCATGAAACATT
1 ATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCATGAAACATT
33504973 TACCTAACCCGTT
66 TACCTAACCCGTT
33504986 ATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCATGAAACATT
1 ATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCATGAAACATT
33505051 TACCTAACCCGTT
66 TACCTAACCCGTT
33505064 ATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCATGAAACATT
1 ATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCATGAAACATT
33505129 TACCTAACCCGTT
66 TACCTAACCCGTT
33505142 ATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCATGAAACATT
1 ATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCATGAAACATT
33505207 TACCTAACCCGTT
66 TACCTAACCCGTT
33505220 ATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCATGAAACATT
1 ATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCATGAAACATT
33505285 TACCTAACCCGTT
66 TACCTAACCCGTT
33505298 ATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCATGAAACATT
1 ATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCATGAAACATT
33505363 TACCTAACCCGTT
66 TACCTAACCCGTT
33505376 ATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCATGAAACATT
1 ATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCATGAAACATT
33505441 TACCTAACCCGTT
66 TACCTAACCCGTT
33505454 ATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCATGAAACATT
1 ATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCATGAAACATT
33505519 TACCTAACCCGTT
66 TACCTAACCCGTT
33505532 ATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCA
1 ATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCA
33505588 ATTTGTATCA
Statistics
Matches: 757, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
78 757 1.00
ACGTcount: A:0.36, C:0.27, G:0.06, T:0.31
Consensus pattern (78 bp):
ATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCCATTATCATGAAACATT
TACCTAACCCGTT
Found at i:33509151 original size:151 final size:151
Alignment explanation
Indices: 33508877--33509178 Score: 568
Period size: 151 Copynumber: 2.0 Consensus size: 151
33508867 GTTTTGGAAG
*
33508877 GATTGCACAGTCGGTTCGTTAACTTACTGCGTCAGAGGTTGGCTAGCCAAAGAGACAAAATGGCG
1 GATTGCACAGTCGGTTCGTTAACTTACTGCGTCAGAGGTTGGCTAGCCAAAGAGACAAAATAGCG
* *
33508942 TGGGATTCGCCATTGAGAAGCGTTGATCTAGCATAGATTATTGGCTAGAGTCAGGTTCCCTAAAA
66 TGGGATTCGCCAATGAGAAGCGTTGATCTAGCATAGATTATTGGCTAGAGTCAAGTTCCCTAAAA
33509007 ATCGTAAGTCTAATCTTTGGA
131 ATCGTAAGTCTAATCTTTGGA
*
33509028 GATTGCACAGTCGGTTCGTTAACTTACTGCGTCAGAGGTTGGCTAGCCAAAGAGACAAAATATCG
1 GATTGCACAGTCGGTTCGTTAACTTACTGCGTCAGAGGTTGGCTAGCCAAAGAGACAAAATAGCG
33509093 TGGGATTCGCCAATGAGAAGCGTTGATCTAGCATAGATTATTGGCTAGAGTCAAGTTCCCTAAAA
66 TGGGATTCGCCAATGAGAAGCGTTGATCTAGCATAGATTATTGGCTAGAGTCAAGTTCCCTAAAA
33509158 ATCGTAAGTCTAATCTTTGGA
131 ATCGTAAGTCTAATCTTTGGA
33509179 ACTGGTGGTC
Statistics
Matches: 147, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
151 147 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (151 bp):
GATTGCACAGTCGGTTCGTTAACTTACTGCGTCAGAGGTTGGCTAGCCAAAGAGACAAAATAGCG
TGGGATTCGCCAATGAGAAGCGTTGATCTAGCATAGATTATTGGCTAGAGTCAAGTTCCCTAAAA
ATCGTAAGTCTAATCTTTGGA
Found at i:33509371 original size:18 final size:19
Alignment explanation
Indices: 33509343--33509385 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
33509333 ATTTTTCCTC
33509343 ATTTCAATTTCTGC-AATTT-
1 ATTT-AATTTC-GCAAATTTA
33509362 ATTTAATTTCGCAAATTTA
1 ATTTAATTTCGCAAATTTA
33509381 ATTTA
1 ATTTA
33509386 CTTTAAATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 2 0.09
18 11 0.50
19 9 0.41
ACGTcount: A:0.33, C:0.12, G:0.05, T:0.51
Consensus pattern (19 bp):
ATTTAATTTCGCAAATTTA
Found at i:33509550 original size:12 final size:12
Alignment explanation
Indices: 33509533--33509565 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
33509523 CTACTTCCCA
33509533 TTTACTATTATT
1 TTTACTATTATT
33509545 TTTACTATTATT
1 TTTACTATTATT
33509557 TTTACTATT
1 TTTACTATT
33509566 TTCCAAGGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.24, C:0.09, G:0.00, T:0.67
Consensus pattern (12 bp):
TTTACTATTATT
Found at i:33512364 original size:15 final size:14
Alignment explanation
Indices: 33512344--33512390 Score: 60
Period size: 15 Copynumber: 3.3 Consensus size: 14
33512334 GCAACCCAAT
33512344 TTTTATTTTTATTTA
1 TTTTATTTTTA-TTA
*
33512359 TTTTA-TCTTATTA
1 TTTTATTTTTATTA
33512372 TTTTATTATTTATTA
1 TTTTATT-TTTATTA
33512387 TTTT
1 TTTT
33512391 CAGAAATTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 8 0.29
14 5 0.18
15 15 0.54
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTTATTTTTATTA
Done.