genome.fa.s13.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Length:  102024878

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   

This is table  115  of  310  ( 37082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36927166--36927315	75	2.0	75	97	0	282	30	24	14	30	1.94
36932240--36932460	40	5.6	40	89	2	313	26	25	23	24	2.00
36938191--36938363	46	3.7	46	76	17	196	22	19	27	30	1.98
36938188--36938357	93	1.8	93	94	2	306	22	19	28	30	1.98
36943726--36943898	46	3.7	46	77	13	201	21	20	27	29	1.98
36943723--36943893	93	1.8	93	94	0	306	21	21	28	28	1.98
36947157--36947329	46	3.7	46	75	13	183	23	20	26	29	1.99
36947154--36947324	93	1.8	93	91	0	279	22	21	27	28	1.99
36950726--36950793	29	2.3	29	82	5	84	29	30	13	26	1.94
36950895--36950973	29	2.7	30	82	13	110	29	30	15	25	1.96
36950441--36950942	174	2.9	174	96	0	934	31	24	14	29	1.95
36957434--36957590	60	2.6	60	96	2	287	21	15	26	36	1.93
36957535--36957631	41	2.4	41	98	0	185	18	15	27	38	1.91
36957576--36957758	60	3.0	60	94	2	312	21	14	27	36	1.93
36957475--36957691	101	2.1	101	99	0	425	19	15	27	38	1.91
36957434--36957800	161	2.3	165	90	3	591	22	14	26	36	1.93
36957691--36957794	43	2.5	43	80	3	122	27	14	26	30	1.95
36963088--36963241	67	2.3	67	93	2	256	29	22	29	18	1.97
36963171--36963222	27	2.0	26	84	3	68	34	21	26	17	1.95
36971310--36971434	55	2.3	55	85	2	162	16	29	28	25	1.97
36975045--36975073	14	2.0	15	93	6	51	62	13	6	17	1.52
36976842--36976901	24	2.4	26	77	5	61	30	3	21	45	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36984671--36984840	46	3.7	46	78	7	200	30	28	20	20	1.98
36984913--36985013	50	2.0	50	88	3	150	28	27	13	29	1.95
36987361--36987408	15	3.2	15	80	11	62	58	14	14	12	1.64
36990373--36990544	93	1.8	93	88	2	265	28	27	20	22	1.99
36990365--36990536	46	3.7	46	70	11	136	29	27	19	23	1.98
36990598--36990694	49	2.0	49	91	0	158	22	27	16	32	1.96
36991147--36991304	79	2.0	79	93	0	271	26	23	10	39	1.86
37003029--37003053	11	2.3	11	100	0	50	84	0	0	16	0.63
37009374--37009417	19	2.4	18	82	14	54	11	34	11	43	1.77
37015759--37015802	21	2.0	22	83	12	56	6	25	4	63	1.38
37025890--37025992	51	2.0	52	88	1	154	18	23	16	41	1.89
37039892--37039955	27	2.4	27	91	0	101	15	20	37	26	1.92
37039993--37040118	27	4.7	27	76	8	96	39	20	8	30	1.83
37040017--37040132	27	4.3	27	79	6	83	40	18	8	31	1.81
37040112--37040467	27	13.2	27	84	5	400	30	21	8	39	1.84
37040112--37040467	81	4.4	81	85	4	452	30	21	8	39	1.84
37040947--37041019	31	2.4	31	90	0	110	19	19	13	47	1.82
37040947--37041040	6	15.3	6	70	16	68	19	17	14	48	1.81
37049104--37049139	19	1.9	18	88	5	54	44	16	0	38	1.48
37056301--37056465	40	4.1	40	81	6	165	26	27	21	24	1.99
37058831--37059055	40	5.7	40	83	5	269	24	21	28	25	1.99
37058912--37059074	40	4.1	40	88	3	136	25	22	29	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37058905--37059088	80	2.3	80	83	5	214	26	21	27	24	1.99
37059200--37059787	292	2.0	292	97	0	1124	27	18	19	35	1.95
37070163--37070434	49	5.6	49	88	4	426	30	9	30	29	1.89
37071799--37071983	40	4.7	40	79	8	191	25	28	21	24	1.99
37079738--37080070	40	8.6	40	75	15	285	25	25	22	26	2.00
37079818--37080020	71	2.8	70	79	15	214	25	26	22	26	2.00
37079779--37079992	110	1.9	110	87	3	315	25	26	22	25	2.00
37079735--37080034	150	2.0	150	96	1	548	25	25	22	27	2.00
37079888--37080071	79	2.3	82	82	11	224	25	26	21	26	2.00
37088482--37088538	11	5.5	10	73	22	55	77	1	17	3	1.00
37088482--37088538	5	11.0	5	77	17	55	77	1	17	3	1.00
37088482--37088538	16	3.7	14	80	17	60	77	1	17	3	1.00
37088607--37088631	12	2.1	12	100	0	50	76	0	16	8	1.02
37088601--37088656	18	3.1	18	76	5	51	69	3	19	7	1.27
37088607--37088688	30	2.7	31	81	5	105	64	1	21	12	1.33
37091639--37091712	38	1.9	38	97	0	139	33	13	1	51	1.50
37092255--37092308	20	2.7	20	82	0	63	24	20	18	37	1.94
37092255--37092328	30	2.5	30	86	8	98	21	20	18	39	1.93
37092255--37092319	20	3.2	20	71	16	53	23	21	16	38	1.93
37093749--37093847	52	1.9	52	95	0	180	35	22	22	20	1.96
37093976--37094031	19	2.9	19	76	10	60	78	3	7	10	1.06
37093976--37094032	20	2.9	20	71	12	55	78	3	7	10	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37095061--37095200	6	22.3	6	65	8	64	69	2	20	7	1.27
37095062--37095155	18	5.4	18	75	7	86	69	4	19	7	1.30
37095093--37095212	12	9.6	12	74	14	75	71	4	18	5	1.22
37095061--37095215	81	1.9	83	81	6	190	68	3	20	8	1.30
37095161--37095198	13	2.8	13	82	17	51	73	0	18	7	1.06
37095162--37095212	21	2.4	21	74	6	50	74	1	17	5	1.11
37095215--37095277	33	1.9	33	84	12	85	53	6	26	12	1.62
37097203--37097241	21	2.0	20	90	10	62	23	15	28	33	1.95
37098074--37098120	20	2.3	20	81	0	58	23	12	34	29	1.92
37099791--37099896	48	2.2	48	85	9	137	14	24	1	59	1.45
37100924--37100963	10	3.8	10	83	9	53	2	10	2	85	0.80
37100915--37100978	21	2.7	24	79	18	71	4	17	3	75	1.11
37100915--37100978	24	2.7	24	77	18	62	4	17	3	75	1.11
37104476--37104524	24	2.0	24	96	0	89	46	16	4	32	1.65
37109986--37110046	31	2.0	31	93	0	104	36	21	24	18	1.95
37118909--37118961	23	2.4	22	76	20	56	9	18	1	69	1.25
37122332--37122375	22	2.0	22	90	0	70	25	34	4	36	1.76
37123969--37124008	19	2.2	18	90	4	62	55	15	0	30	1.41
37124077--37124164	19	4.8	19	71	13	76	45	13	9	31	1.75
37124063--37124190	54	2.4	54	92	1	204	42	15	8	33	1.78
37127318--37127470	53	2.9	54	85	2	200	35	16	25	21	1.95
37128325--37128369	14	3.3	14	78	6	56	35	0	15	48	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37129447--37129506	29	2.1	29	90	0	93	41	28	0	30	1.56
37129453--37129500	15	3.3	15	73	5	53	43	25	0	31	1.55
37132118--37132200	35	2.5	33	82	11	89	7	19	2	71	1.21
37133429--37133530	51	2.0	51	100	0	204	17	31	1	49	1.58
37135732--37135849	55	2.1	55	84	6	159	25	22	13	38	1.90
37139296--37139336	15	2.7	16	74	11	50	7	26	0	65	1.18
37139494--37139532	15	2.4	15	87	12	51	10	20	2	66	1.33
37146379--37146527	28	5.4	28	95	0	255	25	11	28	34	1.91
37148870--37148904	17	2.1	17	88	0	52	51	2	0	45	1.16
37153526--37153581	30	1.9	28	85	7	76	53	3	30	12	1.55
37154542--37154636	48	2.0	48	97	0	181	44	13	29	12	1.81
37160749--37160830	41	2.0	41	95	0	146	34	13	30	21	1.92
37161732--37161894	71	2.3	70	80	9	188	30	12	21	35	1.91
37161786--37162082	122	2.4	121	94	1	515	26	13	21	39	1.90
37162051--37162266	72	2.9	72	83	4	236	21	16	23	37	1.93
37162248--37162283	18	2.0	18	89	10	56	11	16	5	66	1.40
37167407--37167454	16	3.1	15	90	6	69	31	2	2	64	1.16
37167407--37167458	8	6.5	8	82	8	61	30	1	1	65	1.14
37170157--37170273	43	2.7	42	79	10	121	35	23	16	25	1.95
37170208--37170311	44	2.4	43	84	7	131	33	25	20	21	1.97
37174606--37174662	19	2.8	20	80	17	64	29	5	0	64	1.15
37174702--37174766	19	3.5	18	76	12	60	32	3	1	63	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37174618--37174747	3	43.7	3	68	24	64	32	2	1	63	1.16
37177948--37177993	20	2.3	20	96	0	83	41	6	4	47	1.49
37179377--37179417	21	2.0	21	85	9	57	60	0	0	39	0.96
37179375--37179417	22	2.0	21	82	13	52	60	0	0	39	0.97
37181928--37181986	29	2.0	29	96	0	109	37	22	6	33	1.80
37184236--37184418	92	2.0	92	92	3	307	47	15	8	28	1.74
37187928--37187991	33	1.9	33	96	0	119	35	10	23	29	1.89
37199056--37199108	27	1.9	28	81	11	65	58	1	5	33	1.32
37199358--37199444	39	2.2	39	79	4	104	52	5	6	34	1.52
37206523--37206558	6	6.0	6	100	0	72	66	0	16	16	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310