Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 116 of 310
Found at i:37206747 original size:23 final size:24
Alignment explanation
Indices: 37206707--37206751 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
37206697 AATTTCTCGA
37206707 AATTTTATCGAGGGTAAAATTGTC
1 AATTTTATCGAGGGTAAAATTGTC
*
37206731 AATTTTAT-TAGGGTAAAATTG
1 AATTTTATCGAGGGTAAAATTG
37206752 AGGTAAGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.36, C:0.04, G:0.20, T:0.40
Consensus pattern (24 bp):
AATTTTATCGAGGGTAAAATTGTC
Found at i:37208157 original size:46 final size:46
Alignment explanation
Indices: 37208104--37208195 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
37208094 TAACAAGTTT
37208104 AACTTATTTTCCAATTTAGTCCTTATCATAAACTAAGCTTACTAAC
1 AACTTATTTTCCAATTTAGTCCTTATCATAAACTAAGCTTACTAAC
37208150 AACTTATTTTCCAATTTAGTCCTTATCATAAACTAAGCTTACTAAC
1 AACTTATTTTCCAATTTAGTCCTTATCATAAACTAAGCTTACTAAC
37208196 TAACAATTTC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.04, T:0.39
Consensus pattern (46 bp):
AACTTATTTTCCAATTTAGTCCTTATCATAAACTAAGCTTACTAAC
Found at i:37208905 original size:103 final size:104
Alignment explanation
Indices: 37208721--37208920 Score: 296
Period size: 103 Copynumber: 1.9 Consensus size: 104
37208711 ACAATTTAGC
* ** *
37208721 CCCTGAGCTTTAATTAATGATTTTCTCGGTTAAATTACTTAACCAATCTTTAATATATTTTTACA
1 CCCTGAGCTTAAATTAACAATTTTCTCGGTTAAATTACTTAACCAATCTTTAATATATTTTTAAA
*
37208786 CTAACTCTATTCATCTTCCTATTTAATTCTTATGAGAGT
66 CTAACTCTATTAATCTTCCTATTTAATTCTTATGAGAGT
* *
37208825 CCCTGAGCTTAAATTAACAATTTT-TCCTGTTAAATTACTT-ATCAATCTTTAATATATTTTTAA
1 CCCTGAGCTTAAATTAACAATTTTCT-CGGTTAAATTACTTAACCAATCTTTAATATATTTTTAA
* *
37208888 ATTAACTCTATTAATCTTCCTATTTTATTCTTA
65 ACTAACTCTATTAATCTTCCTATTTAATTCTTA
37208921 CAAGCTCGAT
Statistics
Matches: 86, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
103 52 0.60
104 34 0.40
ACGTcount: A:0.30, C:0.17, G:0.06, T:0.47
Consensus pattern (104 bp):
CCCTGAGCTTAAATTAACAATTTTCTCGGTTAAATTACTTAACCAATCTTTAATATATTTTTAAA
CTAACTCTATTAATCTTCCTATTTAATTCTTATGAGAGT
Found at i:37211017 original size:44 final size:44
Alignment explanation
Indices: 37210904--37211009 Score: 182
Period size: 41 Copynumber: 2.5 Consensus size: 44
37210894 TCATTTTGAC
37210904 TTTTCATATAATTATTCTATACACTGTTAATGAATCTTAAAAAG
1 TTTTCATATAATTATTCTATACACTGTTAATGAATCTTAAAAAG
37210948 -TTT--TATAATTATTCTATACACTGTTAATGAATCTTAAAAAG
1 TTTTCATATAATTATTCTATACACTGTTAATGAATCTTAAAAAG
*
37210989 TTTTCATATAATTATTATATA
1 TTTTCATATAATTATTCTATA
37211010 TATTGTTAGC
Statistics
Matches: 58, Mismatches: 1, Indels: 6
0.89 0.02 0.09
Matches are distributed among these distances:
41 38 0.66
42 3 0.05
43 3 0.05
44 14 0.24
ACGTcount: A:0.39, C:0.09, G:0.06, T:0.46
Consensus pattern (44 bp):
TTTTCATATAATTATTCTATACACTGTTAATGAATCTTAAAAAG
Found at i:37212396 original size:23 final size:25
Alignment explanation
Indices: 37212359--37212416 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
37212349 AATAAATTCG
37212359 TATAAAAAATCTAGTTATATT-ATT
1 TATAAAAAATCTAGTTATATTAATT
* *
37212383 TATAAAATAT-TAGTTATTTTAAATT
1 TATAAAAAATCTAGTTATATT-AATT
37212408 TATAAAAAA
1 TATAAAAAA
37212417 AAAACCACAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
23 9 0.31
24 9 0.31
25 11 0.38
ACGTcount: A:0.50, C:0.02, G:0.03, T:0.45
Consensus pattern (25 bp):
TATAAAAAATCTAGTTATATTAATT
Found at i:37213526 original size:29 final size:29
Alignment explanation
Indices: 37213440--37213527 Score: 86
Period size: 29 Copynumber: 3.0 Consensus size: 29
37213430 GATTAAATTA
* * * *
37213440 AAATTAAAGTTTAAGTATACATTTGAACC
1 AAATTAAAGTTCATGTATACAATTGCACC
* * *
37213469 ATAATTAGAGTTTCATGTGTATAATTGCACC
1 A-AATTAAAG-TTCATGTATACAATTGCACC
*
37213500 AAATTAAAGTTCATGTATACAACTGCAC
1 AAATTAAAGTTCATGTATACAATTGCAC
37213528 ATTAAATCAA
Statistics
Matches: 46, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
29 17 0.37
30 14 0.30
31 15 0.33
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.34
Consensus pattern (29 bp):
AAATTAAAGTTCATGTATACAATTGCACC
Found at i:37214175 original size:18 final size:18
Alignment explanation
Indices: 37214141--37214175 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37214131 TGTGTGATAC
*
37214141 TTATAATTATAATTTAAT
1 TTATAATTATAAGTTAAT
*
37214159 TTATAATTATTAGTTAA
1 TTATAATTATAAGTTAA
37214176 AAATTTGAGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (18 bp):
TTATAATTATAAGTTAAT
Found at i:37215151 original size:11 final size:10
Alignment explanation
Indices: 37215116--37215151 Score: 54
Period size: 11 Copynumber: 3.4 Consensus size: 10
37215106 ATAATAAAAA
37215116 TAATATTAAT
1 TAATATTAAT
37215126 TAAATATTAAT
1 T-AATATTAAT
37215137 TAATATTATAT
1 TAATATTA-AT
37215148 TAAT
1 TAAT
37215152 GTGAAATTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 8 0.33
11 16 0.67
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (10 bp):
TAATATTAAT
Found at i:37218550 original size:84 final size:84
Alignment explanation
Indices: 37218420--37218573 Score: 254
Period size: 84 Copynumber: 1.8 Consensus size: 84
37218410 ATCACGACGG
*
37218420 GTTGGTTTCAAAGAAAATTTTAAAATTTCATTATGCTTATTTTCACTATTTTCAAACCGATTTTC
1 GTTGGTTTCAAAGAAAATTTTAAAATTTCATTATGATTATTTTCACTATTTTCAAACCGATTTTC
37218485 CAACAAATTATCACAACTA
66 CAACAAATTATCACAACTA
* * * * *
37218504 GTTGGTTTCAATGAAAATTTTAATATTTCTTTCTGATTATTTTCACTCTTTTCAAACCGATTTTC
1 GTTGGTTTCAAAGAAAATTTTAAAATTTCATTATGATTATTTTCACTATTTTCAAACCGATTTTC
37218569 CAACA
66 CAACA
37218574 TAGGCAACTT
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
84 64 1.00
ACGTcount: A:0.32, C:0.17, G:0.08, T:0.44
Consensus pattern (84 bp):
GTTGGTTTCAAAGAAAATTTTAAAATTTCATTATGATTATTTTCACTATTTTCAAACCGATTTTC
CAACAAATTATCACAACTA
Found at i:37222112 original size:21 final size:21
Alignment explanation
Indices: 37222086--37222126 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
37222076 AGACGAGCAA
* *
37222086 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
37222107 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
37222127 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:37235952 original size:21 final size:21
Alignment explanation
Indices: 37235910--37235952 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
37235900 TTAGACCTTG
*
37235910 TCCTGTGATTTTTGTTTTCTC
1 TCCTGTGATTTTTGTTTCCTC
*
37235931 TCCTGTTGGTTTTTG-TTCCTC
1 TCCTG-TGATTTTTGTTTCCTC
37235952 T
1 T
37235953 TGCTACATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.02, C:0.21, G:0.16, T:0.60
Consensus pattern (21 bp):
TCCTGTGATTTTTGTTTCCTC
Found at i:37246161 original size:17 final size:18
Alignment explanation
Indices: 37246139--37246172 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37246129 CAGCACTTGT
37246139 AAAAGA-CCAATAAAAGA
1 AAAAGATCCAATAAAAGA
*
37246156 AAAAGATCCTATAAAAG
1 AAAAGATCCAATAAAAG
37246173 TTCCAATATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.65, C:0.12, G:0.12, T:0.12
Consensus pattern (18 bp):
AAAAGATCCAATAAAAGA
Found at i:37248305 original size:20 final size:20
Alignment explanation
Indices: 37248282--37248340 Score: 70
Period size: 20 Copynumber: 3.0 Consensus size: 20
37248272 AAAATATATA
37248282 AAAAT-ATTTTTATACTTTTT
1 AAAATAATTTTTATA-TTTTT
37248302 AAAATAATTTTTA-ATTTTT
1 AAAATAATTTTTATATTTTT
*
37248321 AAAATGA-TTTTATAATTTTT
1 AAAATAATTTTTAT-ATTTTT
37248341 TTAAATTTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
18 5 0.14
19 11 0.31
20 12 0.34
21 7 0.20
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.58
Consensus pattern (20 bp):
AAAATAATTTTTATATTTTT
Found at i:37248331 original size:18 final size:19
Alignment explanation
Indices: 37248282--37248340 Score: 75
Period size: 19 Copynumber: 3.0 Consensus size: 19
37248272 AAAATATATA
37248282 AAAAT-ATTTTTATACTTTTT
1 AAAATAATTTTTA-A-TTTTT
37248302 AAAATAATTTTTAATTTTT
1 AAAATAATTTTTAATTTTT
*
37248321 AAAATGATTTTATAATTTTT
1 AAAATAATTTT-TAATTTTT
37248341 TTAAATTTTA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
19 15 0.42
20 14 0.39
21 7 0.19
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.58
Consensus pattern (19 bp):
AAAATAATTTTTAATTTTT
Found at i:37248332 original size:30 final size:29
Alignment explanation
Indices: 37248298--37248354 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
37248288 TTTTTATACT
*
37248298 TTTTAAAATAATTTTTAATTTTTAAAATGA
1 TTTTAAAAT-ATTTTTAAATTTTAAAATGA
* *
37248328 TTTTATAATTTTTTTAAATTTTAAAAT
1 TTTTAAAATATTTTTAAATTTTAAAAT
37248355 TTAATTAGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 16 0.67
30 8 0.33
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (29 bp):
TTTTAAAATATTTTTAAATTTTAAAATGA
Found at i:37251601 original size:3 final size:3
Alignment explanation
Indices: 37251593--37251628 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
37251583 GGAACGGTAG
37251593 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
37251629 TTAACTTCCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:37258802 original size:26 final size:26
Alignment explanation
Indices: 37258759--37258856 Score: 117
Period size: 26 Copynumber: 3.8 Consensus size: 26
37258749 TGGTACAAAT
* *
37258759 TGATAATAGG-TTAAGTAAATGTTCCA
1 TGATAAT-GGATTAGGTAAATGTTTCA
* *
37258785 TGTTAATGGATTAGGTAAATATTTCA
1 TGATAATGGATTAGGTAAATGTTTCA
* *
37258811 TGATAATGGGTTAAGTAAATGTTTCA
1 TGATAATGGATTAGGTAAATGTTTCA
*
37258837 TGATAATGGTTTAGGTAAAT
1 TGATAATGGATTAGGTAAAT
37258857 ATTTTATAAT
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
25 2 0.03
26 59 0.97
ACGTcount: A:0.36, C:0.04, G:0.21, T:0.39
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTTCA
Found at i:37258844 original size:52 final size:52
Alignment explanation
Indices: 37258759--37258860 Score: 168
Period size: 52 Copynumber: 2.0 Consensus size: 52
37258749 TGGTACAAAT
*
37258759 TGATAATAGGTTAAGTAAATGTTCCATGTTAATGGATTAGGTAAATATTTCA
1 TGATAATAGGTTAAGTAAATGTTCCATGATAATGGATTAGGTAAATATTTCA
* * *
37258811 TGATAATGGGTTAAGTAAATGTTTCATGATAATGGTTTAGGTAAATATTT
1 TGATAATAGGTTAAGTAAATGTTCCATGATAATGGATTAGGTAAATATTT
37258861 TATAATGGGC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.35, C:0.04, G:0.21, T:0.40
Consensus pattern (52 bp):
TGATAATAGGTTAAGTAAATGTTCCATGATAATGGATTAGGTAAATATTTCA
Found at i:37259606 original size:17 final size:17
Alignment explanation
Indices: 37259584--37259618 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
37259574 AAGAGTGGTC
37259584 AGATTAGTCAAACAGTG
1 AGATTAGTCAAACAGTG
37259601 AGATTAGTCAAACAGTG
1 AGATTAGTCAAACAGTG
37259618 A
1 A
37259619 AACATGCGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.43, C:0.11, G:0.23, T:0.23
Consensus pattern (17 bp):
AGATTAGTCAAACAGTG
Found at i:37261670 original size:18 final size:19
Alignment explanation
Indices: 37261647--37261683 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
37261637 TATATTTTAA
*
37261647 AATAATTTT-TAATGTTTT
1 AATAATTTTATAATATTTT
37261665 AATAATTTTATAATATTTT
1 AATAATTTTATAATATTTT
37261684 TAAATTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (19 bp):
AATAATTTTATAATATTTT
Found at i:37261684 original size:29 final size:28
Alignment explanation
Indices: 37261640--37261708 Score: 72
Period size: 29 Copynumber: 2.5 Consensus size: 28
37261630 AATTTCATAT
*
37261640 ATTTTAAAATAATTTTTAATGTT-TTAATA
1 ATTTTAAAATAATTTTAAAT-TTATTAA-A
* *
37261669 ATTTTATAATATTTTTAAATTTATTAAA
1 ATTTTAAAATAATTTTAAATTTATTAAA
37261697 A-TTTAAAA-AATT
1 ATTTTAAAATAATT
37261709 AATTAATTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
26 3 0.09
27 6 0.18
28 4 0.12
29 21 0.62
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (28 bp):
ATTTTAAAATAATTTTAAATTTATTAAA
Found at i:37265673 original size:18 final size:17
Alignment explanation
Indices: 37265645--37265679 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
37265635 TAAGTTAAGA
*
37265645 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
37265662 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
37265680 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:37265801 original size:156 final size:156
Alignment explanation
Indices: 37265640--37265948 Score: 555
Period size: 156 Copynumber: 2.0 Consensus size: 156
37265630 AAAATTAAGT
*
37265640 TAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATG
1 TAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAAGAATTATGTTTAAATATG
* * *
37265705 ATTAAGATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCAT
66 ATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAATAATCAT
*
37265770 TTACCAAAACAATTTTCTGCTAATTA
131 TTACCAAAACAATTTTATGCTAATTA
*
37265796 TAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATTAGAATTATGTTTAAATATG
1 TAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAAGAATTATGTTTAAATATG
*
37265861 ATTAAAATATTTATTACTGATAATAATAATCTTATTTAAATTTAAATAACAATAACAATAATCAT
66 ATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAATAATCAT
37265926 TTACCAAAACAATTTTATGCTAA
131 TTACCAAAACAATTTTATGCTAA
37265949 GGGTATTCTA
Statistics
Matches: 146, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
156 146 1.00
ACGTcount: A:0.47, C:0.06, G:0.04, T:0.44
Consensus pattern (156 bp):
TAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAAGAATTATGTTTAAATATG
ATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAATAATCAT
TTACCAAAACAATTTTATGCTAATTA
Found at i:37265829 original size:18 final size:18
Alignment explanation
Indices: 37265801--37265849 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 18
37265791 AATTATAAGA
37265801 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAATTATAT
37265818 ATTTTAATTAAA--ATAT
1 ATTTTAATTAAATTATAT
37265834 A-TTTAATTAGAATTAT
1 ATTTTAATTA-AATTAT
37265850 GTTTAAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
15 8 0.29
16 7 0.25
17 5 0.18
18 8 0.29
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (18 bp):
ATTTTAATTAAATTATAT
Found at i:37265835 original size:16 final size:16
Alignment explanation
Indices: 37265801--37265855 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
37265791 AATTATAAGA
37265801 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
37265818 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
37265834 A-TTTAATTAGAAT-T
1 ATTTTAATTAAAATAT
37265848 ATGTTTAA
1 AT-TTTAA
37265856 ATATGATTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 2 0.06
15 11 0.32
16 10 0.29
17 5 0.15
18 6 0.18
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.53
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:37266065 original size:44 final size:45
Alignment explanation
Indices: 37266000--37266090 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
37265990 ACCTCTATTC
* * *
37266000 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
37266044 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
37266089 CA
1 CA
37266091 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:37266109 original size:17 final size:16
Alignment explanation
Indices: 37266071--37266139 Score: 111
Period size: 16 Copynumber: 4.2 Consensus size: 16
37266061 GATTAGCTAT
37266071 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
37266087 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
*
37266104 TGCACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
37266120 TACACCTCTATTCCAA
1 TACACCTCTAATCCAA
37266136 TACA
1 TACA
37266140 GCGAACCAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
16 34 0.69
17 15 0.31
ACGTcount: A:0.35, C:0.38, G:0.01, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:37273393 original size:19 final size:19
Alignment explanation
Indices: 37273360--37273403 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
37273350 CATAAAAATC
* *
37273360 CAAAAAAGTCTAAAAATTA
1 CAAAAAAATCCAAAAATTA
37273379 CAAAAAAATCCAAAAATTA
1 CAAAAAAATCCAAAAATTA
37273398 CAAAAA
1 CAAAAA
37273404 CATCAAATCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.68, C:0.14, G:0.02, T:0.16
Consensus pattern (19 bp):
CAAAAAAATCCAAAAATTA
Found at i:37274749 original size:24 final size:24
Alignment explanation
Indices: 37274722--37274767 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
37274712 AAATATTCTC
*
37274722 TTTTAAAATTTTTTTATATATATA
1 TTTTAAAATTTATTTATATATATA
* *
37274746 TTTTTAAATTTATTTATGTATA
1 TTTTAAAATTTATTTATATATA
37274768 GTTCGATTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (24 bp):
TTTTAAAATTTATTTATATATATA
Found at i:37287123 original size:176 final size:176
Alignment explanation
Indices: 37286829--37287341 Score: 660
Period size: 172 Copynumber: 2.9 Consensus size: 176
37286819 ATGACATCAA
* * *
37286829 TGAAAATTACAGATCTTATCTCCATGTATC-ACTATGGAGTAGATCAAGAATGGCGAGTCTTATC
1 TGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTATC
* * * *
37286893 TCCATGTATTGGTTATGGAGCAGATTTTAGCCACCAGCCTTATCT-TTCTGAAGTTGCAGAGAGC
66 TCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAACCTTATCTCCT-TGAAGTTGCAGAGAGC
37286957 AGGTTGAAGATGCAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGAC
130 AGGTTGAAGATGCAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGAC
* *
37287004 TGAAAATTACAGATCTTATCTCCATGTATCGGCTAAGGAGCAGATAAAAAATGGCGAGTCTTATC
1 TGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTATC
* *
37287069 TCCATGTATCGGCTACGGAGCAGATTTTAGCCACCAACCTTATCTCGTTGAAGTTGCAGAGAGCA
66 TCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAACCTTATCTCCTTGAAGTTGCAGAGAGCA
37287134 GGTTGAAGATGCAAGTC---T-TTCCTGAAGTTGCAGGAAGCAGAC
131 GGTTGAAGATGCAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGAC
* * ** * * * *
37287176 TGAAGATTACAGATATTATCTATATGTATCGGCTATGGAGCAGATCGAAGATGGTGAGTCTTATT
1 TGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTATC
* * * * * * * * *
37287241 TCTATGTATCGACTATGGAGCAAATTTTAGCCACCGACTTTGTCTCCCTAAAGTTGCAGTGGAGC
66 TCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAACCTTATCTCCTTGAAGTTGCAG-AGAGC
* * * * * *
37287306 AGGCTCAATATGCAAATATTATCTTCTTGAAGTTGC
130 AGGTTGAAGATGCAAGTCTTATCTTCCTGAAGTTGC
37287342 TGTAAGACTA
Statistics
Matches: 294, Mismatches: 37, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
172 128 0.44
173 18 0.06
175 30 0.10
176 105 0.36
177 13 0.04
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (176 bp):
TGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTATC
TCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAACCTTATCTCCTTGAAGTTGCAGAGAGCA
GGTTGAAGATGCAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGAC
Found at i:37287566 original size:15 final size:15
Alignment explanation
Indices: 37287546--37287575 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
37287536 CAAAAAAATC
37287546 CAAAAATTACAAAAA
1 CAAAAATTACAAAAA
37287561 CAAAAATTACAAAAA
1 CAAAAATTACAAAAA
37287576 AAAGTCTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.73, C:0.13, G:0.00, T:0.13
Consensus pattern (15 bp):
CAAAAATTACAAAAA
Found at i:37288954 original size:28 final size:29
Alignment explanation
Indices: 37288882--37288954 Score: 80
Period size: 28 Copynumber: 2.6 Consensus size: 29
37288872 TTTTAAATCT
*
37288882 ATTTA-ATATATATATATTTTCTTTTCAA
1 ATTTATATATATATATATTCTCTTTTCAA
* * * *
37288910 ATCTGT-TATGTAAATATTCTCTTTT-AA
1 ATTTATATATATATATATTCTCTTTTCAA
37288937 ATTTATATATATATATAT
1 ATTTATATATATATATAT
37288955 ATTTAAATTT
Statistics
Matches: 34, Mismatches: 9, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
27 6 0.18
28 28 0.82
ACGTcount: A:0.36, C:0.07, G:0.03, T:0.55
Consensus pattern (29 bp):
ATTTATATATATATATATTCTCTTTTCAA
Found at i:37294398 original size:23 final size:23
Alignment explanation
Indices: 37294368--37294479 Score: 95
Period size: 23 Copynumber: 4.9 Consensus size: 23
37294358 TTGATGAACA
*
37294368 GTAAGCTCTATTGAGCTGTAACG
1 GTAAGCTCTATTGAGCTGAAACG
* *
37294391 GTAAGCTCTATTGATCTAAAACG
1 GTAAGCTCTATTGAGCTGAAACG
* * * *
37294414 GTAAGCTTTTTTGAGTTG-AACA
1 GTAAGCTCTATTGAGCTGAAACG
* *
37294436 GTGAGCTCGTA-CGAGCTGAAACG
1 GTAAGCTC-TATTGAGCTGAAACG
*
37294459 GTAAGCT-TTTTCGAGCTGAAA
1 GTAAGCTCTATT-GAGCTGAAA
37294480 ACAATAAGCT
Statistics
Matches: 67, Mismatches: 18, Indels: 8
0.72 0.19 0.09
Matches are distributed among these distances:
21 1 0.01
22 14 0.21
23 52 0.78
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (23 bp):
GTAAGCTCTATTGAGCTGAAACG
Found at i:37294460 original size:45 final size:46
Alignment explanation
Indices: 37294409--37294501 Score: 125
Period size: 45 Copynumber: 2.0 Consensus size: 46
37294399 TATTGATCTA
* * * *
37294409 AAACGGTAAGCTTTTTTGAGTTG-AACAGTGAGCTCGTACGAGCTG
1 AAACGGTAAGCTTTTTCGAGCTGAAACAATAAGCTCGTACGAGCTG
*
37294454 AAACGGTAAGCTTTTTCGAGCTGAAAACAATAAGCTCTTACGAGCTG
1 AAACGGTAAGCTTTTTCGAGCTG-AAACAATAAGCTCGTACGAGCTG
37294501 A
1 A
37294502 TATATCGATA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
45 21 0.51
47 20 0.49
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (46 bp):
AAACGGTAAGCTTTTTCGAGCTGAAACAATAAGCTCGTACGAGCTG
Found at i:37294487 original size:24 final size:24
Alignment explanation
Indices: 37294439--37294501 Score: 74
Period size: 24 Copynumber: 2.7 Consensus size: 24
37294429 TTGAACAGTG
* **
37294439 AGCTCGTACGAGCTG-AAACGGTA
1 AGCTCTTACGAGCTGAAAACAATA
* *
37294462 AGCTTTTTCGAGCTGAAAACAATA
1 AGCTCTTACGAGCTGAAAACAATA
37294486 AGCTCTTACGAGCTGA
1 AGCTCTTACGAGCTGA
37294502 TATATCGATA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
23 12 0.38
24 20 0.62
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.24
Consensus pattern (24 bp):
AGCTCTTACGAGCTGAAAACAATA
Found at i:37300609 original size:16 final size:18
Alignment explanation
Indices: 37300582--37300614 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
37300572 TAAAATTGGG
37300582 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
37300599 TTGAG-AAATTAATTTA
1 TTGAGAAAATTAATTTA
37300615 GTTAATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.42
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:37308805 original size:25 final size:24
Alignment explanation
Indices: 37308777--37308826 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 24
37308767 TATCTTTGTA
* *
37308777 TATTATTTATTATATTATTATACAT
1 TATTATATATTATATTA-CATACAT
37308802 TATTATATATTATATTACATACAT
1 TATTATATATTATATTACATACAT
37308826 T
1 T
37308827 TCACTATACA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 7 0.30
25 16 0.70
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (24 bp):
TATTATATATTATATTACATACAT
Found at i:37308818 original size:15 final size:15
Alignment explanation
Indices: 37308775--37308818 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 15
37308765 TTTATCTTTG
37308775 TATATTAT-TTATTA
1 TATATTATATTATTA
37308789 TATTATTATACATTATTA
1 TA-TATTAT--ATTATTA
37308807 TATATTATATTA
1 TATATTATATTA
37308819 CATACATTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
14 2 0.08
15 10 0.38
17 6 0.23
18 8 0.31
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (15 bp):
TATATTATATTATTA
Found at i:37308891 original size:21 final size:20
Alignment explanation
Indices: 37308837--37308896 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 20
37308827 TCACTATACA
*
37308837 TATATATTAT-TTTATATAT
1 TATATATTTTGTTTATATAT
*
37308856 TATCTATCATATTGTTTATATCAT
1 TA--TAT-ATTTTGTTTATAT-AT
37308880 TATATATTTTGTTTATA
1 TATATATTTTGTTTATA
37308897 ATTTTTATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
19 2 0.06
21 14 0.42
22 6 0.18
23 7 0.21
24 4 0.12
ACGTcount: A:0.32, C:0.05, G:0.03, T:0.60
Consensus pattern (20 bp):
TATATATTTTGTTTATATAT
Found at i:37316483 original size:14 final size:14
Alignment explanation
Indices: 37316464--37316492 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
37316454 TGATATGGAG
37316464 TATAATTCTATTCA
1 TATAATTCTATTCA
37316478 TATAATTCTATTCA
1 TATAATTCTATTCA
37316492 T
1 T
37316493 CCAATCCTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.14, G:0.00, T:0.52
Consensus pattern (14 bp):
TATAATTCTATTCA
Found at i:37317541 original size:42 final size:43
Alignment explanation
Indices: 37317484--37317566 Score: 105
Period size: 42 Copynumber: 2.0 Consensus size: 43
37317474 AAAAAATTAG
* * *
37317484 TAAAAAATATCAATTTTAAATATATATTTTAAGA-ATATAAGC
1 TAAAAAATATCAATTTTAAACACACATTTTAAGATATATAAGC
* * *
37317526 TAAAACATATTAATTTTATACACACATTTTAAGATATATAA
1 TAAAAAATATCAATTTTAAACACACATTTTAAGATATATAA
37317567 TTTAAGGAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
42 28 0.82
43 6 0.18
ACGTcount: A:0.51, C:0.07, G:0.04, T:0.39
Consensus pattern (43 bp):
TAAAAAATATCAATTTTAAACACACATTTTAAGATATATAAGC
Found at i:37326796 original size:23 final size:21
Alignment explanation
Indices: 37326754--37326797 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 21
37326744 GTTTTCTTAG
37326754 CAAAAACAACAAAAAAACTAA
1 CAAAAACAACAAAAAAACTAA
*
37326775 CAAAAACTAATAAAGAAAACTAA
1 CAAAAAC-AACAAA-AAAACTAA
37326798 ATCTCCAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 7 0.35
22 5 0.25
23 8 0.40
ACGTcount: A:0.73, C:0.16, G:0.02, T:0.09
Consensus pattern (21 bp):
CAAAAACAACAAAAAAACTAA
Found at i:37330485 original size:18 final size:18
Alignment explanation
Indices: 37330461--37330505 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
37330451 GCGATTACAC
37330461 GGATGATGAAGG-AGATGA
1 GGATGATGAAGGAAGA-GA
*
37330479 TGATGATGAAGGAAGAGA
1 GGATGATGAAGGAAGAGA
37330497 GGATGATGA
1 GGATGATGA
37330506 TGAAAATGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 21 0.88
19 3 0.12
ACGTcount: A:0.40, C:0.00, G:0.42, T:0.18
Consensus pattern (18 bp):
GGATGATGAAGGAAGAGA
Found at i:37343347 original size:2 final size:2
Alignment explanation
Indices: 37343340--37343376 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
37343330 GTTAATAATT
37343340 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
37343377 AGGATCTGGC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:37356563 original size:9 final size:9
Alignment explanation
Indices: 37356531--37356642 Score: 66
Period size: 9 Copynumber: 12.3 Consensus size: 9
37356521 ATACACTGAT
*
37356531 ATAATAGTG
1 ATAATAGTA
*
37356540 ATAATAATA
1 ATAATAGTA
*
37356549 A-CATAGTA
1 ATAATAGTA
37356557 ATAATAGTA
1 ATAATAGTA
* *
37356566 TTGATAGTA
1 ATAATAGTA
* *
37356575 ATAAAAATA
1 ATAATAGTA
*
37356584 AT-ATATTAA
1 ATAATAGT-A
37356593 ATAATAGTA
1 ATAATAGTA
*
37356602 ATAAAATAGTG
1 AT--AATAGTA
* *
37356613 CTAATAGTC
1 ATAATAGTA
*
37356622 ATAATAGTG
1 ATAATAGTA
*
37356631 ATAATAATA
1 ATAATAGTA
37356640 ATA
1 ATA
37356643 GCATGATAAA
Statistics
Matches: 77, Mismatches: 21, Indels: 10
0.71 0.19 0.09
Matches are distributed among these distances:
8 9 0.12
9 57 0.74
10 4 0.05
11 7 0.09
ACGTcount: A:0.54, C:0.03, G:0.11, T:0.33
Consensus pattern (9 bp):
ATAATAGTA
Found at i:37356573 original size:35 final size:36
Alignment explanation
Indices: 37356534--37356601 Score: 93
Period size: 35 Copynumber: 1.9 Consensus size: 36
37356524 CACTGATATA
* *
37356534 ATAGTGATAATAATAACATAGT-AATAATAGTATTG
1 ATAGTAATAAAAATAACATAGTAAATAATAGTATTG
* *
37356569 ATAGTAATAAAAATAATATATTAAATAATAGTA
1 ATAGTAATAAAAATAACATAGTAAATAATAGTA
37356602 ATAAAATAGT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
35 18 0.64
36 10 0.36
ACGTcount: A:0.54, C:0.01, G:0.10, T:0.34
Consensus pattern (36 bp):
ATAGTAATAAAAATAACATAGTAAATAATAGTATTG
Found at i:37356788 original size:3 final size:3
Alignment explanation
Indices: 37356780--37356953 Score: 63
Period size: 3 Copynumber: 56.3 Consensus size: 3
37356770 AAACATAGAA
* * * * * * *
37356780 AAT AAT AAT AAT CAT AAT -AC AAT AGT AAT AGT AAT CAC AAA AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
37356827 GAT AAT AAT AAT AAT AAT ATT AA- AGT AA- AGT AAAT AAT AAT ACT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT
* *
37356871 -AT ATAT AAAT ATAT ATAT ACAT ATGT AAT AGA- AAT ACAC ACGAT -AT
1 AAT A-AT -AAT A-AT A-AT A-AT A-AT AAT A-AT AAT A-AT A--AT AAT
* *
37356917 AAT AAT AAT AAT AAT AAT AAT AAT AAA AAC AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
37356954 CATATATATA
Statistics
Matches: 125, Mismatches: 33, Indels: 26
0.68 0.18 0.14
Matches are distributed among these distances:
2 7 0.06
3 95 0.76
4 21 0.17
5 2 0.02
ACGTcount: A:0.60, C:0.06, G:0.05, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:37357083 original size:30 final size:28
Alignment explanation
Indices: 37357049--37357118 Score: 72
Period size: 30 Copynumber: 2.4 Consensus size: 28
37357039 TGGAGAGGGT
37357049 ATATATAATATAATAATAAT-ATAAATAATA
1 ATATATAATA-AA-AATAATGAT-AATAATA
*
37357079 ATATATACATGAGAAATAATGATAATAATA
1 ATATATA-AT-AAAAATAATGATAATAATA
37357109 ATATA-AATAA
1 ATATATAATAA
37357119 CAGTAAAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
27 1 0.03
28 2 0.06
29 1 0.03
30 25 0.71
31 5 0.14
32 1 0.03
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.33
Consensus pattern (28 bp):
ATATATAATAAAAATAATGATAATAATA
Found at i:37357778 original size:14 final size:15
Alignment explanation
Indices: 37357759--37357787 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
37357749 TATTTATTTA
37357759 TTTGG-TTTATTAGG
1 TTTGGTTTTATTAGG
37357773 TTTGGTTTTATTAGG
1 TTTGGTTTTATTAGG
37357788 CCCCGGGCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.14, C:0.00, G:0.28, T:0.59
Consensus pattern (15 bp):
TTTGGTTTTATTAGG
Found at i:37358334 original size:67 final size:68
Alignment explanation
Indices: 37358045--37358342 Score: 422
Period size: 68 Copynumber: 4.4 Consensus size: 68
37358035 TCTTCCGCTA
* * * *
37358045 AAACTTCAAGAAGATCTACTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGGAGAAATCCA
1 AAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGATCCA
37358110 CTG
66 CTG
* * * * *
37358113 AAACTTCAAGGAGATCTGCCGTGGCTTTTAGTCGCTCCAACGCCATTTCAGGAAGAAGAGGTTCG
1 AAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGATCCA
37358178 CTG
66 CTG
* * *
37358181 AAACTTCAAGGAGATCTGCTGTGGCCTTTAACCGCTCCAATGCCATTTCAGGGAA-AAGAGATCC
1 AAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCA-GGAAGAAGAGATCC
37358245 ACTG
65 ACTG
*
37358249 AAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCA-TTCAGGGAA-AAGAGATCC
1 AAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCA-GGAAGAAGAGATCC
*
37358312 TCTG
65 ACTG
*
37358316 AAACTTCAAGGAGATCTGTTGTGGCTT
1 AAACTTCAAGGAGATCTGCTGTGGCTT
37358343 CAAGAAGATA
Statistics
Matches: 207, Mismatches: 22, Indels: 3
0.89 0.09 0.01
Matches are distributed among these distances:
67 48 0.23
68 155 0.75
69 4 0.02
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.25
Consensus pattern (68 bp):
AAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGATCCA
CTG
Found at i:37359240 original size:87 final size:87
Alignment explanation
Indices: 37358451--37359229 Score: 1060
Period size: 87 Copynumber: 9.0 Consensus size: 87
37358441 ATCTATAATT
* * * ** * * * *
37358451 TTCAGCCTATTACCCTATTGCTTAGGGGTTTAAGGCCCATCACCTTCAATCTATTTCTCTACTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTCGATCTGTTTCCCTACTGC
*
37358516 TTAGAGGGTTAAGATCTTGTAAA
66 TTAGGGGGTTAAGATC-TGTAAA
* * * * *
37358539 TCCAGCCTGTTACCCTACTACTTAGGGGTTTAAGG-TCTATCGTCTTCGATCTGTTTCCCTACTA
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTC-ATCGCCTTCGATCTGTTTCCCTACTG
37358603 CTTAGGGGGTTAAGATCTGTAAA
65 CTTAGGGGGTTAAGATCTGTAAA
* * * ** *
37358626 TTCCACCTGTTACCCTACTGCTTAAGGGTTTAAGGTCCATCATCTTTGATCTGTTTCCCTACTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTCGATCTGTTTCCCTACTGC
37358691 TTAGGGGGTTAAGATCTGTAAA
66 TTAGGGGGTTAAGATCTGTAAA
* * * ** *
37358713 TTCCACCTGTTACCCTACTGCTTAAGGGTTTAAGGTCCATCATCTTTGATCTGTTTCCCTACTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTCGATCTGTTTCCCTACTGC
37358778 TTAGGGGGTTAAGATCTGTAAA
66 TTAGGGGGTTAAGATCTGTAAA
* *
37358800 TTTAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTCGATTTGTTTCCCTACTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTCGATCTGTTTCCCTACTGC
*
37358865 TTAGGGGGTTAAGATTTGTAAA
66 TTAGGGGGTTAAGATCTGTAAA
* * *
37358887 TCCAACCTGTTACCCTACTGTTTAGGGGTTTAAGGTTCATCGCCTTCGATTTGTTTCCCTACTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTCGATCTGTTTCCCTACTGC
37358952 TTAGGGGGTTAAGATCTGTAAA
66 TTAGGGGGTTAAGATCTGTAAA
* * * * ** * * * *
37358974 TTTAGCCTGTTACCCTACTACTTAAGGAG-TTAAGGCCCGTCACTTTCGATTTGTTTCCCTACTG
1 TTCAACCTGTTACCCTACTGCTT-AGGGGTTTAAGGTTCATCGCCTTCGATCTGTTTCCCTACTG
* *
37359038 CTTAGGGGGATAAGATCTGGAAA
65 CTTAGGGGGTTAAGATCTGTAAA
*
37359061 TTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTCGATCTGTTTCCCTACTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTCGATCTGTTTCCCTACTGC
* *
37359126 TTAGGGGGATAAGATCTGGAAA
66 TTAGGGGGTTAAGATCTGTAAA
*
37359148 TTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTCGATCTGTTTCCCTACTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTCGATCTGTTTCCCTACTGC
*
37359213 TTAGGGGGTCAA-ATCTG
66 TTAGGGGGTTAAGATCTG
37359230 CTATCTTCAA
Statistics
Matches: 627, Mismatches: 60, Indels: 10
0.90 0.09 0.01
Matches are distributed among these distances:
86 9 0.01
87 546 0.87
88 72 0.11
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.36
Consensus pattern (87 bp):
TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCATCGCCTTCGATCTGTTTCCCTACTGC
TTAGGGGGTTAAGATCTGTAAA
Found at i:37359379 original size:132 final size:132
Alignment explanation
Indices: 37359222--37359484 Score: 418
Period size: 132 Copynumber: 2.0 Consensus size: 132
37359212 CTTAGGGGGT
* *
37359222 CAAATCTGCTATCTTCAACTTGTTCCTTATAAACACAGGGATGTCATGCTGAAATCTTCAATCTG
1 CAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCAATCTG
* * *
37359287 CTTCACTGTAAGTACAGTAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATATGCTATCTTCGATCTGTTCCCTATAAACACAGGGAT
37359352 GG
131 GG
* * * * *
37359354 CAAATCTGTTATTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTGAAATCTTCGATCTG
1 CAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCAATCTG
* *
37359419 CTTCACTGTAAGCACAGGAATGTCAGATATGTTATCTTCGATCTGTTCCCTATAAGCACAGGGAT
66 CTTCACTGTAAGCACAGGAATGTCAGATATGCTATCTTCGATCTGTTCCCTATAAACACAGGGAT
37359484 G
131 G
37359485 CCATGCTGAA
Statistics
Matches: 119, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
132 119 1.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (132 bp):
CAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCAATCTG
CTTCACTGTAAGCACAGGAATGTCAGATATGCTATCTTCGATCTGTTCCCTATAAACACAGGGAT
GG
Found at i:37359435 original size:88 final size:88
Alignment explanation
Indices: 37359320--37359839 Score: 403
Period size: 88 Copynumber: 5.9 Consensus size: 88
37359310 CAGATCTGCT
* * * * * * *
37359320 ATCTTCGATCTG-TTCCCTATAAACACAGGGATGGCAAATCTGTTATTTTC-AACTTGTTCCCTA
1 ATCTTCGATCTGCTTCACTATAAGCACAGGAATGTCAGATCTGTTATCTTCGATC-TGTTCCCTA
*
37359383 TAAGCATAGGGATGCCATGCTGAA
65 TAAGCACAGGGATGCCATGCTGAA
* *
37359407 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATATGTTATCTTCGATCTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTATAAGCACAGGAATGTCAGATCTGTTATCTTCGATCTGTTCCCTAT
37359472 AAGCACAGGGATGCCATGCTGAA
66 AAGCACAGGGATGCCATGCTGAA
* * * * * * *
37359495 ATCTTTGATCTGCTTCACTGTAAGCACAAGAATGTTAGATCTGCTATCTTCGATATGTTTCCTAT
1 ATCTTCGATCTGCTTCACTATAAGCACAGGAATGTCAGATCTGTTATCTTCGATCTGTTCCCTAT
* **
37359560 AAACACAGGGATGCCAAAT-CTGTT
66 AAGCACAGGGATGCC--ATGCTGAA
* * * * * * ** *
37359584 ATTTTC-AACTTG-TTCCCTATAAGCATAGGGATG-C-CATGCTGAAATCTTCGATCTGCTTCAC
1 ATCTTCGATC-TGCTTCACTATAAGCACAGGAATGTCAGAT-CTGTTATCTTCGATCTG-TTCCC
* * ** **
37359645 TGTAAGCACAGGAATGTTA-GATCTGTT
63 TATAAGCACAGGGATGCCATG--CTGAA
* * * * * * * * * * * *
37359672 ACCTTCCATCT-ATTCCCTACAAGTACAGGGATGCCAAATCTGCTATTTTC-AACTTGTTCCCTA
1 ATCTTCGATCTGCTTCACTATAAGCACAGGAATGTCAGATCTGTTATCTTCGATC-TGTTCCCTA
37359735 TAAGCACAGGGATGCCATGCTGAA
65 TAAGCACAGGGATGCCATGCTGAA
* * * * *
37359759 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGTTACCTTCCATCTATTCCCTAC
1 ATCTTCGATCTGCTTCACTATAAGCACAGGAATGTCAGATCTGTTATCTTCGATCTGTTCCCTAT
* *
37359824 AAGTATAGGGATGCCA
66 AAGCACAGGGATGCCA
37359840 AATCTGCTAT
Statistics
Matches: 339, Mismatches: 76, Indels: 35
0.75 0.17 0.08
Matches are distributed among these distances:
86 3 0.01
87 38 0.11
88 267 0.79
89 27 0.08
90 4 0.01
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (88 bp):
ATCTTCGATCTGCTTCACTATAAGCACAGGAATGTCAGATCTGTTATCTTCGATCTGTTCCCTAT
AAGCACAGGGATGCCATGCTGAA
Found at i:37359508 original size:220 final size:220
Alignment explanation
Indices: 37359242--37359707 Score: 763
Period size: 220 Copynumber: 2.1 Consensus size: 220
37359232 ATCTTCAACT
* * * *
37359242 TGTTCCTTATAAACACAGGGATGTCATGCTGAAATCTTCAATCTGCTTCACTGTAAGTAC-AGTA
1 TGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCAATCTGCTTCACTGTAAGCACAAG-A
* *
37359306 ATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGGCAAATCTGTTATTTTCA
65 ATGTCAGATCTGCTATCTTCGATATGTTCCCTATAAACACAGGGATGCCAAATCTGTTATTTTCA
37359371 ACTTGTTCCCTATAAGCATAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAG
130 ACTTGTTCCCTATAAGCATAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAG
* *
37359436 GAATGTCAGATATGTTATCTTCGATC
195 GAATGTCAGATATGTTACCTTCCATC
**
37359462 TGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAAGAA
1 TGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCAATCTGCTTCACTGTAAGCACAAGAA
* *
37359527 TGTTAGATCTGCTATCTTCGATATGTTTCCTATAAACACAGGGATGCCAAATCTGTTATTTTCAA
66 TGTCAGATCTGCTATCTTCGATATGTTCCCTATAAACACAGGGATGCCAAATCTGTTATTTTCAA
37359592 CTTGTTCCCTATAAGCATAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGG
131 CTTGTTCCCTATAAGCATAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGG
* *
37359657 AATGTTAGATCTGTTACCTTCCATC
196 AATGTCAGATATGTTACCTTCCATC
* * *
37359682 TATTCCCTACAAGTACAGGGATGCCA
1 TGTTCCCTATAAGCACAGGGATGCCA
37359708 AATCTGCTAT
Statistics
Matches: 228, Mismatches: 17, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
220 226 0.99
221 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.32
Consensus pattern (220 bp):
TGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCAATCTGCTTCACTGTAAGCACAAGAA
TGTCAGATCTGCTATCTTCGATATGTTCCCTATAAACACAGGGATGCCAAATCTGTTATTTTCAA
CTTGTTCCCTATAAGCATAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGG
AATGTCAGATATGTTACCTTCCATC
Found at i:37359803 original size:220 final size:218
Alignment explanation
Indices: 37359255--37359839 Score: 662
Period size: 220 Copynumber: 2.7 Consensus size: 218
37359245 TCCTTATAAA
* * * *
37359255 CACAGGGATGTCATGCTGAAATC-TTCAATCTGCTTCACTGTAAGTAC-AGTAATGTCAGATCTG
1 CACAGGGATGCCATGCTGAAATCTTTCAA-CTGCTTCACTATAAGCACAAG-AATGCCAGA-CTG
** *
37359318 CTATCTTCGATCTGTTCCCTATAAACACAGGGATGGCAAATCTGTTATTTTCAACTTGTTCCCTA
63 AAATCTTCGATCTGTT-CCTATAAACACAGGGATGCCAAATCTGTTATTTTCAACTTGTTCCCTA
37359383 TAAGCATAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATA
127 TAAGCATAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATA
* * * *
37359448 TGTTATCTTCGATCTGTTCCCTATAAG
192 TGTTACCTTCCATCTATTCCCTACAAG
* * * ** **
37359475 CACAGGGATGCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAAGAATGTTAGATCTGCT
1 CACAGGGATGCCATGCTGAAATCTTTCAACTGCTTCACTATAAGCACAAGAATGCCAGA-CTGAA
*
37359540 ATCTTCGATATGTTTCCTATAAACACAGGGATGCCAAATCTGTTATTTTCAACTTGTTCCCTATA
65 ATCTTCGATCTG-TTCCTATAAACACAGGGATGCCAAATCTGTTATTTTCAACTTGTTCCCTATA
* *
37359605 AGCATAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTTAGATCTG
129 AGCATAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATATG
37359670 TTACCTTCCATCTATTCCCTACAAG
194 TTACCTTCCATCTATTCCCTACAAG
* ** * * *
37359695 TACAGGGATGCCAAAT-CTGCTAT-TTTCAACTTG-TTCCCTATAAGCACAGGGATGCCATG-CT
1 CACAGGGATGCC--ATGCTGAAATCTTTCAAC-TGCTTCACTATAAGCACAAGAATGCCA-GACT
* * * * * ** * *
37359756 GAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGTTACCTTCCA-TCTATTCC
62 GAAATCTTCGATCTG-TTC-CTATAAACACAGGGATGCCAAATCTGTTATTTTCAACT-TGTTCC
* *
37359820 CTACAAGTATAGGGATGCCA
124 CTATAAGCATAGGGATGCCA
37359840 AATCTGCTAT
Statistics
Matches: 317, Mismatches: 39, Indels: 18
0.85 0.10 0.05
Matches are distributed among these distances:
219 18 0.06
220 282 0.89
221 15 0.05
222 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (218 bp):
CACAGGGATGCCATGCTGAAATCTTTCAACTGCTTCACTATAAGCACAAGAATGCCAGACTGAAA
TCTTCGATCTGTTCCTATAAACACAGGGATGCCAAATCTGTTATTTTCAACTTGTTCCCTATAAG
CATAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATATGTT
ACCTTCCATCTATTCCCTACAAG
Found at i:37359994 original size:132 final size:132
Alignment explanation
Indices: 37359462--37359978 Score: 809
Period size: 132 Copynumber: 3.9 Consensus size: 132
37359452 ATCTTCGATC
* *
37359462 TGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTGATCTGCTTCACTGTAAGCACAAGAA
1 TGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAA
* * * * * * * * *
37359527 TGTTAGATCTGCTATCTTCGATATGTTTCCTATAAACACAGGGATGCCAAATCTGTTATTTTCAA
66 TGTCAGATCTGTTACCTTCCATCTATTCCCTACAAACACAGGGATGCCAAATCTGCTATTTTCAA
37359592 CT
131 CT
*
37359594 TGTTCCCTATAAGCATAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAA
1 TGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAA
* **
37359659 TGTTAGATCTGTTACCTTCCATCTATTCCCTACAAGTACAGGGATGCCAAATCTGCTATTTTCAA
66 TGTCAGATCTGTTACCTTCCATCTATTCCCTACAAACACAGGGATGCCAAATCTGCTATTTTCAA
37359724 CT
131 CT
37359726 TGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAA
1 TGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAA
** *
37359791 TGTCAGATCTGTTACCTTCCATCTATTCCCTACAAGTATAGGGATGCCAAATCTGCTATTTTCAA
66 TGTCAGATCTGTTACCTTCCATCTATTCCCTACAAACACAGGGATGCCAAATCTGCTATTTTCAA
37359856 CT
131 CT
*
37359858 TGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACGGGAA
1 TGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAA
* ** * * *
37359923 TGTCAGATCTGTTATCTTTGATCTGTTCCCTATAAACATAGGGATGCCAAATCTGC
66 TGTCAGATCTGTTACCTTCCATCTATTCCCTACAAACACAGGGATGCCAAATCTGC
37359979 AATCTTCGAT
Statistics
Matches: 361, Mismatches: 24, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 361 1.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (132 bp):
TGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAA
TGTCAGATCTGTTACCTTCCATCTATTCCCTACAAACACAGGGATGCCAAATCTGCTATTTTCAA
CT
Found at i:37360105 original size:88 final size:88
Alignment explanation
Indices: 37360003--37360212 Score: 357
Period size: 88 Copynumber: 2.4 Consensus size: 88
37359993 TCTCTGCCGC
* *
37360003 TACAGAGACGCCAAATCATCTTGGATTTACTTCAACGTAAACACATGAAAGCCAAATCAGCTATG
1 TACAGAGATGCCAAATCATCTTGGATCTACTTCAACGTAAACACATGAAAGCCAAATCAGCTATG
*
37360068 TCTTCGATCTGCTCCCCGCCTGG
66 TCTTCGATCTGCTCCCCGCCTGA
* * *
37360091 TACAGAGATGCCAAATCATCTTGGATCTGCTTCAACGTAAACACGTGAAAGCTAAATCAGCTATG
1 TACAGAGATGCCAAATCATCTTGGATCTACTTCAACGTAAACACATGAAAGCCAAATCAGCTATG
37360156 TCTTCGATCTGCTCCCCGCCTGA
66 TCTTCGATCTGCTCCCCGCCTGA
*
37360179 TACAGAGATGCCAAATCATCTTGGATCTGCTTCA
1 TACAGAGATGCCAAATCATCTTGGATCTACTTCA
37360213 GCAAAGGTCA
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
88 116 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (88 bp):
TACAGAGATGCCAAATCATCTTGGATCTACTTCAACGTAAACACATGAAAGCCAAATCAGCTATG
TCTTCGATCTGCTCCCCGCCTGA
Found at i:37360107 original size:264 final size:263
Alignment explanation
Indices: 37359564--37360062 Score: 610
Period size: 264 Copynumber: 1.9 Consensus size: 263
37359554 TCCTATAAAC
* *
37359564 ACAGGGATGCCAAATCTGTTATTTTCAACTTGTTCCCTATAAGCATAGGGATGCCATGCTGAAAT
1 ACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAAT
*
37359629 CTTCGATCTGCTTCACTGTAAGCACAGGAATGTTAGATCTGTTACCTTCCATCTATTCCCTACAA
66 CTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGTTACCTTCCATCTATTCCCTACAA
** * * * * * **
37359694 GTACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAA
131 ACACAGGGATGCCAAATCTGCAATCTTCAACTTGTTCCCTAGAAGCACAGAGACGCCATAAT-AA
* * * * * * * *
37359759 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGTTACCTTCCATCTATTCCCTAC
195 ATCTTCGATCTACTTCACTGTAAACACAGGAAAGCCAAATCAGTTACCTTCCATCTATCCCCGAC
37359824 AAGT
260 AAGT
*
37359828 ATAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAAT
1 ACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAAT
* * ** * *
37359893 CTTCGATCTGCTTCACTGTAAGCACGGGAATGTCAGATCTGTTATCTTTGATCTGTTCCCTATAA
66 CTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGTTACCTTCCATCTATTCCCTACAA
* * * * ** *
37359958 ACATAGGGATGCCAAATCTGCAATCTTCGATTTGTTCTCT-GCCGCTACAGAGACGCCA-AAT-C
131 ACACAGGGATGCCAAATCTGCAATCTTCAACTTGTTCCCTAGAAGC-ACAGAGACGCCATAATAA
* * *
37360020 ATCTTGGATTTACTTCAAC-GTAAACACATGAAAGCCAAATCAG
195 ATCTTCGATCTACTTC-ACTGTAAACACAGGAAAGCCAAATCAG
37360063 CTATGTCTTC
Statistics
Matches: 198, Mismatches: 35, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
261 31 0.16
262 2 0.01
263 3 0.02
264 162 0.82
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (263 bp):
ACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAAT
CTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGTTACCTTCCATCTATTCCCTACAA
ACACAGGGATGCCAAATCTGCAATCTTCAACTTGTTCCCTAGAAGCACAGAGACGCCATAATAAA
TCTTCGATCTACTTCACTGTAAACACAGGAAAGCCAAATCAGTTACCTTCCATCTATCCCCGACA
AGT
Found at i:37360195 original size:47 final size:47
Alignment explanation
Indices: 37360053--37360196 Score: 126
Period size: 47 Copynumber: 3.2 Consensus size: 47
37360043 ACACATGAAA
*
37360053 GCCAAATCAGCTATGTCTTCGATCTGCTCCCCGCCTGGTACAGAGAT
1 GCCAAATCAGCTATGTCTTCGATCTGCTCCCCGCCTGATACAGAGAT
* ** * * *
37360100 GCCAAAT---C-A--TCTTGGATCTGCTTCAACG--T-AAACACGTGAAA
1 GCCAAATCAGCTATGTCTTCGATCTGC-TCCCCGCCTGATACA-GAG-AT
*
37360141 GCTAAATCAGCTATGTCTTCGATCTGCTCCCCGCCTGATACAGAGAT
1 GCCAAATCAGCTATGTCTTCGATCTGCTCCCCGCCTGATACAGAGAT
37360188 GCCAAATCA
1 GCCAAATCA
37360197 TCTTGGATCT
Statistics
Matches: 70, Mismatches: 15, Indels: 24
0.64 0.14 0.22
Matches are distributed among these distances:
39 3 0.04
40 3 0.04
41 18 0.26
42 4 0.06
43 1 0.01
44 2 0.03
45 1 0.01
46 4 0.06
47 27 0.39
48 3 0.04
49 4 0.06
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (47 bp):
GCCAAATCAGCTATGTCTTCGATCTGCTCCCCGCCTGATACAGAGAT
Found at i:37362068 original size:8 final size:8
Alignment explanation
Indices: 37362057--37362127 Score: 56
Period size: 8 Copynumber: 8.8 Consensus size: 8
37362047 CTTTTTGGCA
*
37362057 TTTTTTGT
1 TTTTTTAT
37362065 TTTTTTAT
1 TTTTTTAT
* *
37362073 TGTTTTGT
1 TTTTTTAT
* *
37362081 TTTCTTCT
1 TTTTTTAT
37362089 TTTTCTT-T
1 TTTT-TTAT
37362097 TTTGTGTT-T
1 TTT-T-TTAT
37362106 TTTTTTAT
1 TTTTTTAT
37362114 TTTTTTAT
1 TTTTTTAT
37362122 TTTTTT
1 TTTTTT
37362128 TAAATTTTGA
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
7 2 0.04
8 41 0.79
9 9 0.17
ACGTcount: A:0.04, C:0.04, G:0.07, T:0.85
Consensus pattern (8 bp):
TTTTTTAT
Found at i:37362069 original size:9 final size:9
Alignment explanation
Indices: 37362057--37362128 Score: 56
Period size: 9 Copynumber: 7.7 Consensus size: 9
37362047 CTTTTTGGCA
37362057 TTTTTTGTTT
1 TTTTTTG-TT
37362067 TTTTATTGTT
1 TTTT-TTGTT
*
37362077 TTGTTTTCTT
1 TT-TTTTGTT
* *
37362087 CTTTTTCTT
1 TTTTTTGTT
*
37362096 TTTTGTGTT
1 TTTTTTGTT
37362105 TTTTTT-TAT
1 TTTTTTGT-T
*
37362114 TTTTTTATT
1 TTTTTTGTT
37362123 TTTTTT
1 TTTTTT
37362129 AAATTTTGAA
Statistics
Matches: 52, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
8 1 0.02
9 32 0.62
10 14 0.27
11 5 0.10
ACGTcount: A:0.04, C:0.04, G:0.07, T:0.85
Consensus pattern (9 bp):
TTTTTTGTT
Found at i:37372169 original size:153 final size:153
Alignment explanation
Indices: 37372007--37372311 Score: 479
Period size: 153 Copynumber: 2.0 Consensus size: 153
37371997 TTAAAAGGTT
*
37372007 AAAAGTTAATTTTAATC-CAATATTGACTAAAGAATACTCTCATATCTCATATTAACCTTATAAA
1 AAAAGTTAATTTTAATCTC-ATATTGACTAAAGAATACTCTCATATCTCACATTAACCTTATAAA
* *
37372071 TAAGTGACAAATTCTTCACTATTTTCATTAAAAAGTTAACTTTTA-TCCCATATTGACTAGATAA
65 TAAGTGACAAATTCTTCACTATTTTCATTAAAAAGTTAA-TTTTACTCCCACATTAACTAGATAA
*
37372135 TACTTTCATAGCTCGCTTTCATTAA
129 TACTTTCATAGCTCACTTTCATTAA
* * * * *
37372160 AAAAGTTAATTTTAATCTCATATTGACTAGATAATGCTCTCGTATCTCACATTTACCTTATAAAT
1 AAAAGTTAATTTTAATCTCATATTGACTAAAGAATACTCTCATATCTCACATTAACCTTATAAAT
* *
37372225 AAGTGACAATTTCTTCATTATTTTCATTAAAAAGTTAATTTTACTCCCACATTAACTAGATAATA
66 AAGTGACAAATTCTTCACTATTTTCATTAAAAAGTTAATTTTACTCCCACATTAACTAGATAATA
37372290 CTTTCATAGCTCACTTTCATTA
131 CTTTCATAGCTCACTTTCATTA
37372312 TTTTCATTAG
Statistics
Matches: 139, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
152 5 0.04
153 133 0.96
154 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.07, T:0.40
Consensus pattern (153 bp):
AAAAGTTAATTTTAATCTCATATTGACTAAAGAATACTCTCATATCTCACATTAACCTTATAAAT
AAGTGACAAATTCTTCACTATTTTCATTAAAAAGTTAATTTTACTCCCACATTAACTAGATAATA
CTTTCATAGCTCACTTTCATTAA
Found at i:37372350 original size:67 final size:67
Alignment explanation
Indices: 37372238--37372365 Score: 193
Period size: 67 Copynumber: 1.9 Consensus size: 67
37372228 TGACAATTTC
* * *
37372238 TTCATTATTTTCATTAAAAAGTTAATTTTACTCCCACATTAACTAGATAATACTTTCATAGCTCA
1 TTCATTATTTTCATTAAAAAGTTAATTTTAATCCCACATTAACTAGAGAATACTTCCATAGCTCA
37372303 CT
66 CT
* * * *
37372305 TTCATTATTTTCATTAGAAAGTTAATTTTAATCCCATATTGACTAGAGAGTACTTCCATAG
1 TTCATTATTTTCATTAAAAAGTTAATTTTAATCCCACATTAACTAGAGAATACTTCCATAG
37372366 TTTGCTTCTT
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
67 54 1.00
ACGTcount: A:0.34, C:0.17, G:0.08, T:0.41
Consensus pattern (67 bp):
TTCATTATTTTCATTAAAAAGTTAATTTTAATCCCACATTAACTAGAGAATACTTCCATAGCTCA
CT
Found at i:37372414 original size:23 final size:22
Alignment explanation
Indices: 37372384--37372429 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
37372374 TTCAATGTTT
37372384 CCTTAAAAAAAATAATTTTAACC
1 CCTT-AAAAAAATAATTTTAACC
**
37372407 CCTTAAAAAGTTAATTTTAACC
1 CCTTAAAAAAATAATTTTAACC
37372429 C
1 C
37372430 TCACTGGCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.46, C:0.20, G:0.02, T:0.33
Consensus pattern (22 bp):
CCTTAAAAAAATAATTTTAACC
Found at i:37372723 original size:21 final size:22
Alignment explanation
Indices: 37372697--37372738 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
37372687 ACTATTTTCA
37372697 TTAAAAA-TTAATTTTAATCCC
1 TTAAAAAGTTAATTTTAATCCC
37372718 TTAAAAAGTTAATTTTAATCC
1 TTAAAAAGTTAATTTTAATCC
37372739 TGTATTGACT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.43, C:0.12, G:0.02, T:0.43
Consensus pattern (22 bp):
TTAAAAAGTTAATTTTAATCCC
Found at i:37372831 original size:93 final size:94
Alignment explanation
Indices: 37372718--37372934 Score: 249
Period size: 93 Copynumber: 2.3 Consensus size: 94
37372708 TTTTAATCCC
* * * *
37372718 TTAAAAAGTTAATTTTAATCCTGTATTGACTAAAGAACACTCTCAT-GCTCACATTTACTCTA-T
1 TTAAAAATTTAATTTTAATCCCGCATTGACTAAAGAACACTCTCATAGCTCACATTGACT-TACT
* * * *
37372781 CAATAAGTGTCAACTTCTTTACTATTTTCA
65 AAAAAAGTATCAACTTCTTCACTATTTTCA
* * * * *
37372811 TTAAAAATTTAATTTCAATCCCGCATTGACTAGAGAACATTCTCATATCTCATATTGACTTACTA
1 TTAAAAATTTAATTTTAATCCCGCATTGACTAAAGAACACTCTCATAGCTCACATTGACTTACTA
* *
37372876 AAAAAGTATTAATTTCTTCACTATTTTCA
66 AAAAAGTATCAACTTCTTCACTATTTTCA
* *
37372905 TTAAAAATTTTAATTTTAATCTCACATTGA
1 TTAAAAA-TTTAATTTTAATCCCGCATTGA
37372935 ATTGGGAATA
Statistics
Matches: 103, Mismatches: 18, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
93 42 0.41
94 42 0.41
95 19 0.18
ACGTcount: A:0.35, C:0.18, G:0.06, T:0.41
Consensus pattern (94 bp):
TTAAAAATTTAATTTTAATCCCGCATTGACTAAAGAACACTCTCATAGCTCACATTGACTTACTA
AAAAAGTATCAACTTCTTCACTATTTTCA
Found at i:37373086 original size:21 final size:21
Alignment explanation
Indices: 37373044--37373086 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
37373034 ACTATTTTTA
*
37373044 TTAAAAATTAATTTTGATTCC
1 TTAAAAATTAATTTTGAATCC
*
37373065 TTAAAAAGTTAGTTTT-AATCC
1 TTAAAAA-TTAATTTTGAATCC
37373086 T
1 T
37373087 ACATTTGTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.37, C:0.09, G:0.07, T:0.47
Consensus pattern (21 bp):
TTAAAAATTAATTTTGAATCC
Found at i:37373343 original size:43 final size:44
Alignment explanation
Indices: 37373294--37373377 Score: 161
Period size: 44 Copynumber: 1.9 Consensus size: 44
37373284 CATAGCTCAC
37373294 TTCTTCACTATTTTTATT-AAAAAAGTTAATTTTAATCCCACAA
1 TTCTTCACTATTTTTATTAAAAAAAGTTAATTTTAATCCCACAA
37373337 TTCTTCACTATTTTTATTAAAAAAAGTTAATTTTAATCCCA
1 TTCTTCACTATTTTTATTAAAAAAAGTTAATTTTAATCCCA
37373378 TATTGACTAG
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
43 18 0.45
44 22 0.55
ACGTcount: A:0.37, C:0.15, G:0.02, T:0.45
Consensus pattern (44 bp):
TTCTTCACTATTTTTATTAAAAAAAGTTAATTTTAATCCCACAA
Found at i:37381235 original size:36 final size:36
Alignment explanation
Indices: 37381188--37381258 Score: 142
Period size: 36 Copynumber: 2.0 Consensus size: 36
37381178 ATACGGATAC
37381188 TTGCTCAAACGAGCTTTACCACCAACACACATCTGA
1 TTGCTCAAACGAGCTTTACCACCAACACACATCTGA
37381224 TTGCTCAAACGAGCTTTACCACCAACACACATCTG
1 TTGCTCAAACGAGCTTTACCACCAACACACATCTG
37381259 GGCACTGAGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.32, C:0.34, G:0.11, T:0.23
Consensus pattern (36 bp):
TTGCTCAAACGAGCTTTACCACCAACACACATCTGA
Found at i:37382896 original size:26 final size:27
Alignment explanation
Indices: 37382853--37382903 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
37382843 TAATTAATAT
37382853 ACATTTAAATAATTATAATCAAAATCC
1 ACATTTAAATAATTATAATCAAAATCC
*
37382880 ACATTATAAA-AA-TATAATTAAAAT
1 ACATT-TAAATAATTATAATCAAAAT
37382904 TTATTCCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 11 0.50
27 7 0.32
28 4 0.18
ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33
Consensus pattern (27 bp):
ACATTTAAATAATTATAATCAAAATCC
Found at i:37384229 original size:26 final size:27
Alignment explanation
Indices: 37384186--37384236 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
37384176 TAATTAATAT
37384186 ACATTTAAATAATTATAATCAAAATCC
1 ACATTTAAATAATTATAATCAAAATCC
*
37384213 ACATTATAAA-AA-TATAATTAAAAT
1 ACATT-TAAATAATTATAATCAAAAT
37384237 TTATTCCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 11 0.50
27 7 0.32
28 4 0.18
ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33
Consensus pattern (27 bp):
ACATTTAAATAATTATAATCAAAATCC
Found at i:37385592 original size:20 final size:20
Alignment explanation
Indices: 37385573--37385610 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
37385563 TATATTAATA
37385573 AATTTAA-TATTATAAAAAT
1 AATTTAATTATTATAAAAAT
* *
37385592 ACTTTAATTTTTATAAAAA
1 AATTTAATTATTATAAAAA
37385611 CCTAACCTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (20 bp):
AATTTAATTATTATAAAAAT
Found at i:37385888 original size:20 final size:19
Alignment explanation
Indices: 37385865--37385910 Score: 56
Period size: 21 Copynumber: 2.3 Consensus size: 19
37385855 TTAAAATGTA
37385865 AAATTATATTTTAAATTCTT
1 AAATTATATTTTAAATT-TT
* *
37385885 AAATTTTTTTTTTAAATTTT
1 AAA-TTATATTTTAAATTTT
37385905 AAATTA
1 AAATTA
37385911 GTAAAAGTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
19 2 0.09
20 8 0.36
21 12 0.55
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (19 bp):
AAATTATATTTTAAATTTT
Found at i:37386415 original size:14 final size:16
Alignment explanation
Indices: 37386393--37386430 Score: 53
Period size: 14 Copynumber: 2.5 Consensus size: 16
37386383 TATGAATAAG
37386393 ATATAAAAT-ATTA-A
1 ATATAAAATCATTATA
*
37386407 ATATTAAATCATTATA
1 ATATAAAATCATTATA
37386423 ATATAAAA
1 ATATAAAA
37386431 GTGACAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 8 0.40
15 4 0.20
16 8 0.40
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (16 bp):
ATATAAAATCATTATA
Found at i:37387274 original size:3 final size:3
Alignment explanation
Indices: 37387266--37387294 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
37387256 TTCTTAAAAC
37387266 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
37387295 GCTTTAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:37389050 original size:5 final size:5
Alignment explanation
Indices: 37389040--37389067 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
37389030 TTGTGTGTTC
37389040 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
37389068 CACAAATTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:37392967 original size:5 final size:5
Alignment explanation
Indices: 37392953--37392989 Score: 67
Period size: 5 Copynumber: 7.6 Consensus size: 5
37392943 TTGTGTGTTC
37392953 TTTA- TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
37392990 TCACAATATA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.12
5 28 0.88
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:37395586 original size:27 final size:26
Alignment explanation
Indices: 37395526--37395587 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
37395516 ATTTTATTTT
37395526 ATTTTATTAGGATAATTAATATTAAG
1 ATTTTATTAGGATAATTAATATTAAG
* * *
37395552 ATAATTATTAGGATTATTCAA-ATTTAGG
1 AT-TTTATTAGGATAATT-AATA-TTAAG
37395580 ATTTTATT
1 ATTTTATT
37395588 TTAATTATCT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
26 2 0.07
27 19 0.66
28 8 0.28
ACGTcount: A:0.39, C:0.02, G:0.11, T:0.48
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:37401399 original size:89 final size:89
Alignment explanation
Indices: 37401248--37401424 Score: 327
Period size: 89 Copynumber: 2.0 Consensus size: 89
37401238 AAGGACAAAA
37401248 CAAAGATGTTTCATGACAAAAATATAGTTCAGAAGCATTTCTCAGTAGGACAAAGAGTTTTGCTT
1 CAAAGATGTTTCATGACAAAAATATAGTTCAGAAGCATTTCTCAGTAGGACAAAGAGTTTTGCTT
37401313 TATAACTCCGTATTAAAGCTATTG
66 TATAACTCCGTATTAAAGCTATTG
* * *
37401337 CAAAGTTGTTTCATGACAAAAATATAGTTTAGAAGCATTTCTCGGTAGGACAAAGAGTTTTGCTT
1 CAAAGATGTTTCATGACAAAAATATAGTTCAGAAGCATTTCTCAGTAGGACAAAGAGTTTTGCTT
37401402 TATAACTCCGTATTAAAGCTATT
66 TATAACTCCGTATTAAAGCTATT
37401425 CCCAGGTAAG
Statistics
Matches: 85, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
89 85 1.00
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34
Consensus pattern (89 bp):
CAAAGATGTTTCATGACAAAAATATAGTTCAGAAGCATTTCTCAGTAGGACAAAGAGTTTTGCTT
TATAACTCCGTATTAAAGCTATTG
Found at i:37401702 original size:7 final size:7
Alignment explanation
Indices: 37401692--37401762 Score: 67
Period size: 7 Copynumber: 10.0 Consensus size: 7
37401682 CTTTTTCTTT
37401692 TTATTTA
1 TTATTTA
37401699 TTATTTA
1 TTATTTA
37401706 TTATTT-
1 TTATTTA
* *
37401712 TCCTTTCTTT
1 T--TAT-TTA
37401722 TTATTTA
1 TTATTTA
37401729 TTATTTA
1 TTATTTA
37401736 TTATTTA
1 TTATTTA
37401743 TTATTTTA
1 TTA-TTTA
37401751 TT-TTTA
1 TTATTTA
37401757 TT-TTTA
1 TTATTTA
37401763 GTTAAATATT
Statistics
Matches: 56, Mismatches: 3, Indels: 11
0.80 0.04 0.16
Matches are distributed among these distances:
6 11 0.20
7 32 0.57
8 10 0.18
9 2 0.04
10 1 0.02
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.75
Consensus pattern (7 bp):
TTATTTA
Found at i:37401719 original size:30 final size:30
Alignment explanation
Indices: 37401685--37401741 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
37401675 TCTTTTTCTT
37401685 TTTCTTTTTATTTATTATTTATTATTTTCC
1 TTTCTTTTTATTTATTATTTATTATTTTCC
37401715 TTTCTTTTTATTTATTATTTATTATTT
1 TTTCTTTTTATTTATTATTTATTATTT
37401742 ATTATTTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.18, C:0.07, G:0.00, T:0.75
Consensus pattern (30 bp):
TTTCTTTTTATTTATTATTTATTATTTTCC
Found at i:37401739 original size:37 final size:36
Alignment explanation
Indices: 37401679--37401749 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 36
37401669 AATCTTTCTT
*
37401679 TTTCTTTTTCTTTTTATTTATTATTTATTATTTTCC
1 TTTCTTTTTATTTTTATTTATTATTTATTATTTTCC
37401715 TTTCTTTTTATTTATTATTTATTATTTATTATTTT
1 TTTCTTTTTATTT-TTATTTATTATTTATTATTTT
37401750 ATTTTTATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
36 12 0.36
37 21 0.64
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (36 bp):
TTTCTTTTTATTTTTATTTATTATTTATTATTTTCC
Found at i:37402982 original size:1 final size:1
Alignment explanation
Indices: 37402976--37403017 Score: 57
Period size: 1 Copynumber: 42.0 Consensus size: 1
37402966 AATAAAATTT
* * *
37402976 AAAAAAATAAAAAAAAAAAAAAAAAAAAAAAGAAGAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
37403018 TAAGTACTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
1 35 1.00
ACGTcount: A:0.93, C:0.00, G:0.05, T:0.02
Consensus pattern (1 bp):
A
Found at i:37402993 original size:21 final size:21
Alignment explanation
Indices: 37402954--37402993 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
37402944 TATTCCTAAG
* * *
37402954 TAAATAAATAATAATAAAATT
1 TAAAAAAATAAAAAAAAAATT
37402975 TAAAAAAATAAAAAAAAAA
1 TAAAAAAATAAAAAAAAAA
37402994 AAAAAAAAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.23
Consensus pattern (21 bp):
TAAAAAAATAAAAAAAAAATT
Found at i:37404776 original size:23 final size:21
Alignment explanation
Indices: 37404727--37404783 Score: 69
Period size: 23 Copynumber: 2.6 Consensus size: 21
37404717 AAGATATGAT
*
37404727 ACTTGTGTGCATTTTATTGGC
1 ACTTGTGTGCATTTTATTAGC
*
37404748 GCTTGTGTGCATTTATATTTAGC
1 ACTTGTGTGCATTT-TA-TTAGC
*
37404771 ATTTGTGTGCATT
1 ACTTGTGTGCATT
37404784 CTTGAAGTGT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 13 0.43
22 2 0.07
23 15 0.50
ACGTcount: A:0.16, C:0.12, G:0.23, T:0.49
Consensus pattern (21 bp):
ACTTGTGTGCATTTTATTAGC
Found at i:37411108 original size:6 final size:6
Alignment explanation
Indices: 37411090--37411122 Score: 57
Period size: 6 Copynumber: 5.3 Consensus size: 6
37411080 CGTCCAACCC
37411090 AAAATA GAAAATA AAAATA AAAATA AAAATA AA
1 AAAATA -AAAATA AAAATA AAAATA AAAATA AA
37411123 TAATTATAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 20 0.77
7 6 0.23
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:37419487 original size:41 final size:41
Alignment explanation
Indices: 37419438--37419521 Score: 159
Period size: 41 Copynumber: 2.0 Consensus size: 41
37419428 TAAGTCATTA
37419438 ATTAGCACTCAAGAAATCAAAATTTAAACTCCGTTATTGTC
1 ATTAGCACTCAAGAAATCAAAATTTAAACTCCGTTATTGTC
*
37419479 ATTAGCACTCAAGAAATCAAAATTTAAATTCCGTTATTGTC
1 ATTAGCACTCAAGAAATCAAAATTTAAACTCCGTTATTGTC
37419520 AT
1 AT
37419522 ACTCTTTCCT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (41 bp):
ATTAGCACTCAAGAAATCAAAATTTAAACTCCGTTATTGTC
Found at i:37419867 original size:18 final size:18
Alignment explanation
Indices: 37419844--37419884 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
37419834 ATTTAGATTT
37419844 AATAGTTCAATTTTAAAA
1 AATAGTTCAATTTTAAAA
37419862 AATAGTTCAATTTTAAAA
1 AATAGTTCAATTTTAAAA
37419880 AATAG
1 AATAG
37419885 GTTTATGTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.51, C:0.05, G:0.07, T:0.37
Consensus pattern (18 bp):
AATAGTTCAATTTTAAAA
Found at i:37420703 original size:32 final size:30
Alignment explanation
Indices: 37420642--37420703 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 30
37420632 ATTATTAAAA
37420642 TATTTTTATATATGTTATTATATTAATTAT
1 TATTTTTATATATGTTATTATATTAATTAT
*
37420672 TATTTTTA-ATAATGTTACTTTTTATTAATTAT
1 TATTTTTATAT-ATGTTA--TTATATTAATTAT
37420704 ATGAAGTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
29 2 0.07
30 14 0.50
32 12 0.43
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.63
Consensus pattern (30 bp):
TATTTTTATATATGTTATTATATTAATTAT
Found at i:37428185 original size:3 final size:3
Alignment explanation
Indices: 37428142--37428260 Score: 59
Period size: 3 Copynumber: 38.3 Consensus size: 3
37428132 TTTTTTAACC
* *
37428142 TTA TTT TTA -TA TTA TATA TTA TAA TTA TT- TTA TTA TATA TTA TT-
1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
* * *
37428186 TATA TTA TTA TTA TCTA TTG TATA TTA TTT TTCA TAAA TTA TTA TT-
1 T-TA TTA TTA TTA T-TA TTA T-TA TTA TTA TT-A T-TA TTA TTA TTA
* *
37428232 TTA -CA TTA TTA CTTA TATA TTG TTA TTA T
1 TTA TTA TTA TTA -TTA T-TA TTA TTA TTA T
37428261 GTTTTTACTT
Statistics
Matches: 88, Mismatches: 14, Indels: 28
0.68 0.11 0.22
Matches are distributed among these distances:
2 8 0.09
3 59 0.67
4 21 0.24
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:37428277 original size:47 final size:46
Alignment explanation
Indices: 37428151--37428265 Score: 123
Period size: 47 Copynumber: 2.5 Consensus size: 46
37428141 CTTATTTTTA
* * *
37428151 TATTATATATTATA-ATTA-TTTTAT-TATATATTA-TTTATATTAT
1 TATTATATATTGTATATTATTTTTATAAAT-TATTATTTTACATTAT
*
37428194 TATTATCTATTGTATATTATTTTTCATAAATTATTATTTTACATTAT
1 TATTATATATTGTATATTATTTTT-ATAAATTATTATTTTACATTAT
37428241 TACTTATATATTGT-TATTATGTTTT
1 TA-TTATATATTGTATATTAT-TTTT
37428266 TACTTGTATT
Statistics
Matches: 60, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
43 12 0.20
44 4 0.07
45 4 0.07
46 7 0.12
47 19 0.32
48 14 0.23
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (46 bp):
TATTATATATTGTATATTATTTTTATAAATTATTATTTTACATTAT
Found at i:37428685 original size:17 final size:18
Alignment explanation
Indices: 37428665--37428720 Score: 64
Period size: 17 Copynumber: 3.2 Consensus size: 18
37428655 TTATATTTTA
37428665 TATTTTTATATAAT-TAT
1 TATTTTTATATAATATAT
*
37428682 TATTCTTATA-AATATAT
1 TATTTTTATATAATATAT
*
37428699 T-TTTATTATATATTATAT
1 TATTT-TTATATAATATAT
37428717 TATT
1 TATT
37428721 AAATATCACA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
16 5 0.16
17 18 0.56
18 7 0.22
19 2 0.06
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (18 bp):
TATTTTTATATAATATAT
Found at i:37428719 original size:15 final size:16
Alignment explanation
Indices: 37428654--37428726 Score: 60
Period size: 17 Copynumber: 4.6 Consensus size: 16
37428644 TTTCTAAACC
*
37428654 ATTATATTTTA-TATT
1 ATTATATATTATTATT
*
37428669 TTTATATAATTATTATT
1 ATTATAT-ATTATTATT
* * *
37428686 CTTATAAATATATTTTT
1 ATTATATAT-TATTATT
37428703 ATTATATATTA-TATT
1 ATTATATATTATTATT
*
37428718 ATTAAATAT
1 ATTATATAT
37428727 CACATTTTTT
Statistics
Matches: 46, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
15 17 0.37
16 7 0.15
17 22 0.48
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.60
Consensus pattern (16 bp):
ATTATATATTATTATT
Found at i:37428724 original size:30 final size:31
Alignment explanation
Indices: 37428663--37428726 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
37428653 CATTATATTT
*
37428663 TATATTTTTATATAATTATTATTCTTATAAA
1 TATATTTTTATATAATTATTATTCATATAAA
37428694 TATATTTTTATTATATATTA-TATT-AT-TAAA
1 TATATTTTTA-TATA-ATTATTATTCATATAAA
37428724 TAT
1 TAT
37428727 CACATTTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
30 7 0.23
31 11 0.37
32 8 0.27
33 4 0.13
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (31 bp):
TATATTTTTATATAATTATTATTCATATAAA
Found at i:37432443 original size:14 final size:15
Alignment explanation
Indices: 37432424--37432454 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
37432414 AAAGATATTC
37432424 TTTTTCTAAAT-AAA
1 TTTTTCTAAATGAAA
37432438 TTTTTCTAAATGAAA
1 TTTTTCTAAATGAAA
37432453 TT
1 TT
37432455 GAATCAGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.69
15 5 0.31
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.52
Consensus pattern (15 bp):
TTTTTCTAAATGAAA
Found at i:37440872 original size:206 final size:205
Alignment explanation
Indices: 37440158--37440913 Score: 1208
Period size: 205 Copynumber: 3.7 Consensus size: 205
37440148 AGATGCTTGT
* * *
37440158 ACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTACTTACAAGGAAAAAAATCGAAGACATAGC
1 ACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGG-AACAAATCGAAGACATAGC
** * *
37440223 TGATTTGGCTTTCACGTATTTACGTTGAAGCAAATCTAGGATGATTTGGCATCTCTGTATTGTTA
65 TGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCA
* * * *
37440288 GAGAACAAATCGAAGTCTGGCATCTCCATTTCAACGTAGAACAGATACATAGCAGATCTCACCTT
130 GAGAACAAATCGAAGTCTGGAATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTCACCTT
37440353 CAGATGATCTC
195 CAGATGATCTC
*
37440364 ACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTTCTTACAAGGAACAAATCGAAGACATAGCT
1 ACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
*
37440429 GATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGTATCTCTGTATTGTCAG
66 GATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* *
37440494 AGAACAAATCGAAGTCTGGTATCTCCATTTCGACGGAGAGCAGATACATAACAGATCTCACCTTC
131 AGAACAAATCGAAGTCTGGAATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTCACCTTC
37440559 AGATGATCTC
196 AGATGATCTC
* * *
37440569 ACTAAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGCCATAGCT
1 ACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
37440634 GATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
66 GATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * * *
37440699 AGAACAAATCGAAGTCTGGAATCTCCATATTCGATGGAGGGCAGACACATAGCAGATCTAACCTT
131 AGAACAAATCGAAGTCTGGAATCTCCAT-TTCGACGGAGAGCAGATACATAGCAGATCTCACCTT
* *
37440764 CAAATGAT-TAG
195 CAGATGATCT-C
* * * *
37440775 AATGAAGTAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCT
1 ACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
* *
37440840 GATTTGGTTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
66 GATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
37440905 AGAACAAAT
131 AGAACAAAT
37440914 TAAAGAAGCA
Statistics
Matches: 513, Mismatches: 35, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
205 302 0.59
206 211 0.41
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (205 bp):
ACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
GATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
AGAACAAATCGAAGTCTGGAATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTCACCTTC
AGATGATCTC
Found at i:37440895 original size:411 final size:411
Alignment explanation
Indices: 37440162--37440913 Score: 1229
Period size: 411 Copynumber: 1.8 Consensus size: 411
37440152 GCTTGTACTG
*
37440162 AAGCAGATCCAAGATGGTTTGGCATCCTTGTACTTACAAGGAAAAAAATCGAAGACATAGCTGAT
1 AAGCAGATCCAAGATGATTTGGCATCCTTGTACTTACAAGGAAAAAAATCGAAGACATAGCTGAT
* * *
37440227 TTGGCTTTCACGTATTTACGTTGAAGCAAATCTAGGATGATTTGGCATCTCTGTATTGTTAGAGA
66 TTGGCTTTCACGTACTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
* * * * *
37440292 ACAAATCGAAGTCTGGCATCTCCATTTCAACGTAGAACAGATACATAGCAGATCTCACCTTCAGA
131 ACAAATCGAAGTCTGGAATCTCCATTTCAACGGAGAACAGACACATAGCAGATCTAACCTTCAAA
* *
37440357 TGATCTCACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTTCTTACAAGGAACAAATCGAAGA
196 TGATCTCAATGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGA
* *
37440422 CATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGTATCTCTGTA
261 CATAGCTGATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTA
37440487 TTGTCAGAGAACAAATCGAAGTCTGGTATCTCCATTTCGACGGAGAGCAGATACATAACAGATCT
326 TTGTCAGAGAACAAATCGAAGTCTGGTATCTCCATTTCGACGGAGAGCAGATACATAACAGATCT
37440552 CACCTTCAGATGATCTCACTA
391 CACCTTCAGATGATCTCACTA
** * *
37440573 AAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGG-AACAAATCGAAGCCATAGCTGAT
1 AAGCAGATCCAAGATGATTTGGCATCCTTGTACTTACAAGGAAAAAAATCGAAGACATAGCTGAT
*
37440637 TTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
66 TTGGCTTTCACGTACTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
* * **
37440702 ACAAATCGAAGTCTGGAATCTCCATATTCGATGGAGGGCAGACACATAGCAGATCTAACCTTCAA
131 ACAAATCGAAGTCTGGAATCTCCAT-TTCAACGGAGAACAGACACATAGCAGATCTAACCTTCAA
* * * *
37440767 ATGAT-TAGAATGAAGTAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAA
195 ATGATCT-CAATGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAA
*
37440831 GACATAGCTGATTTGGTTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTG
259 GACATAGCTGATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTG
37440896 TATTGTCAGAGAACAAAT
324 TATTGTCAGAGAACAAAT
37440914 TAAAGAAGCA
Statistics
Matches: 312, Mismatches: 27, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
410 107 0.34
411 205 0.66
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.29
Consensus pattern (411 bp):
AAGCAGATCCAAGATGATTTGGCATCCTTGTACTTACAAGGAAAAAAATCGAAGACATAGCTGAT
TTGGCTTTCACGTACTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
ACAAATCGAAGTCTGGAATCTCCATTTCAACGGAGAACAGACACATAGCAGATCTAACCTTCAAA
TGATCTCAATGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGA
CATAGCTGATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTA
TTGTCAGAGAACAAATCGAAGTCTGGTATCTCCATTTCGACGGAGAGCAGATACATAACAGATCT
CACCTTCAGATGATCTCACTA
Found at i:37442554 original size:7 final size:7
Alignment explanation
Indices: 37442542--37442670 Score: 70
Period size: 7 Copynumber: 18.1 Consensus size: 7
37442532 ACCTTATTTT
37442542 TATATTA
1 TATATTA
37442549 TATATTA
1 TATATTA
37442556 TA-ATTA
1 TATATTA
*
37442562 TTTTATTA
1 -TATATTA
37442570 TATATTA
1 TATATTA
37442577 TTTATATTA
1 --TATATTA
37442586 T-TATTA
1 TATATTA
* *
37442592 TCTATTG
1 TATATTA
*
37442599 TATATTG
1 TATATTA
*
37442606 TATATTG
1 TATATTA
*
37442613 TATATTG
1 TATATTA
*
37442620 T-TTTTCA
1 TATATT-A
*
37442627 TAAATTA
1 TATATTA
*
37442634 TTATTATTT
1 -TA-TATTA
*
37442643 TACATTA
1 TATATTA
37442650 T-TACTTA
1 TATA-TTA
37442657 TATATTA
1 TATATTA
37442664 T-TATTA
1 TATATTA
37442670 T
1 T
37442671 GTTTTTACTT
Statistics
Matches: 98, Mismatches: 13, Indels: 23
0.73 0.10 0.17
Matches are distributed among these distances:
6 20 0.20
7 56 0.57
8 12 0.12
9 10 0.10
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.60
Consensus pattern (7 bp):
TATATTA
Found at i:37442570 original size:21 final size:19
Alignment explanation
Indices: 37442535--37442835 Score: 84
Period size: 19 Copynumber: 15.6 Consensus size: 19
37442525 TTTTTTAACC
*
37442535 TTATTTTTA-TATTATATA
1 TTATTTATATTATTATATA
*
37442553 TTATAATTATTTTATTATATA
1 TTAT--TTATATTATTATATA
37442574 TTATTTATATTATTAT-TA
1 TTATTTATATTATTATATA
*
37442592 TCTATTGTATATT-GTATAT-
1 T-TATT-TATATTATTATATA
* *
37442611 TGTATATTGT-TT-TTCATAAA
1 T-TAT-TTATATTATT-ATATA
*
37442631 TTA-TTATTATT-TTACATTA
1 TTATTTA-TATTATTATA-TA
37442650 TTACTTATATATTATTAT-TA
1 TTA-TT-TATATTATTATATA
*
37442670 TGTTTTTACT-TGTATTATATA
1 T-TATTTA-TAT-TATTATATA
37442691 TT-TATTA-ATTATTTATATA
1 TTAT-TTATATTA-TTATATA
* *
37442710 TATAATGTAT-TTATATATAAA
1 T-T-ATTTATATTAT-TATATA
*
37442731 TT-TTTGATATTGTTAT-T-
1 TTATTT-ATATTATTATATA
* * * **
37442748 TGT-TTCATTTTTTTA-ACC
1 T-TATTTATATTATTATATA
*
37442766 TTATTTTTA-TATTATATA
1 TTATTTATATTATTATATA
*
37442784 TTATAATTATTTTATTATATA
1 TTAT--TTATATTATTATATA
37442805 TTATTTATATTATTAT-TA
1 TTATTTATATTATTATATA
37442823 TATATTGTATATT
1 T-TATT-TATATT
37442836 GTTTTTCATA
Statistics
Matches: 212, Mismatches: 31, Indels: 78
0.66 0.10 0.24
Matches are distributed among these distances:
17 15 0.07
18 32 0.15
19 70 0.33
20 43 0.20
21 46 0.22
22 6 0.03
ACGTcount: A:0.32, C:0.03, G:0.04, T:0.62
Consensus pattern (19 bp):
TTATTTATATTATTATATA
Found at i:37442573 original size:16 final size:16
Alignment explanation
Indices: 37442544--37442592 Score: 68
Period size: 15 Copynumber: 3.2 Consensus size: 16
37442534 CTTATTTTTA
37442544 TATTATATATTATA-AT
1 TATT-TATATTATATAT
37442560 TATTT-TATTATATAT
1 TATTTATATTATATAT
37442575 TATTTATATTAT-TAT
1 TATTTATATTATATAT
37442590 TAT
1 TAT
37442593 CTATTGTATA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
14 7 0.23
15 14 0.45
16 10 0.32
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
TATTTATATTATATAT
Found at i:37442707 original size:17 final size:17
Alignment explanation
Indices: 37442680--37442728 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 17
37442670 TGTTTTTACT
*
37442680 TGTATTATATATTTATTAA
1 TGTATT-TATATATA-TAA
37442699 T-TATTTATATATATAA
1 TGTATTTATATATATAA
37442715 TGTATTTATATATA
1 TGTATTTATATATA
37442729 AATTTTTGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 4 0.14
17 19 0.68
18 4 0.14
19 1 0.04
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (17 bp):
TGTATTTATATATATAA
Found at i:37442809 original size:3 final size:3
Alignment explanation
Indices: 37442766--37442887 Score: 65
Period size: 3 Copynumber: 39.3 Consensus size: 3
37442756 TTTTTTAACC
* *
37442766 TTA TTT TTA -TA TTA TATA TTA TAA TTA TT- TTA TTA TATA TTA TT-
1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
* * * *
37442810 TATA TTA TTA TTA TATA TTG TATA TTG TTT TTCA TAAA TTA TTA TTA
1 T-TA TTA TTA TTA T-TA TTA T-TA TTA TTA TT-A T-TA TTA TTA TTA
*
37442857 TT- TTA -CA TTA TTA CTTA TATA TTA TTA TTA T
1 TTA TTA TTA TTA TTA -TTA T-TA TTA TTA TTA T
37442888 GTTTTTACTT
Statistics
Matches: 92, Mismatches: 13, Indels: 28
0.69 0.10 0.21
Matches are distributed among these distances:
2 8 0.09
3 63 0.68
4 21 0.23
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:37442883 original size:30 final size:30
Alignment explanation
Indices: 37442565--37442940 Score: 163
Period size: 30 Copynumber: 12.1 Consensus size: 30
37442555 ATAATTATTT
*
37442565 TATTATATATTA-TTTATATTATTA-TTATC
1 TATTAT-TATTATTTTATATTATTATTTATA
* *
37442594 TATTGTATATTGTATATTGTATATTGTT-TTTCATA
1 TATTAT-TA-T-TAT-TT-TATATTATTATTT-ATA
* * *
37442629 AATTATTATTATTTTACATTATTACTTATA
1 TATTATTATTATTTTATATTATTATTTATA
* *
37442659 TATTATTATTATGTT-T-TTACTTGTATTATA
1 TATTATTATTATTTTATATTA-TTAT-TTATA
37442689 TATTTATTAATTATTTATATATATAATGTATTTATA
1 TA-TTATT-ATTATTT-TATAT-T-AT-TATTTATA
* * * * *
37442725 TA-TA-AATT-TTTGATATTGTTATTTGTT
1 TATTATTATTATTTTATATTATTATTTATA
* **
37442752 TCATT-TTTTTAACCTTAT-TT-TTATATTATA
1 T-ATTATTATT-ATTTTATATTATTAT-TTATA
*
37442782 TATTATAATTATTTTATTATATATTATTTATA
1 TATTATTATTATTTTA-TAT-TATTATTTATA
* *
37442814 TTATTATTATATATTGTATATTGTT-TTTCATA
1 -TATTATTAT-TATTTTATATTATTATTT-ATA
* * *
37442846 AATTATTATTATTTTACATTATTACTTATA
1 TATTATTATTATTTTATATTATTATTTATA
* *
37442876 TATTATTATTATGTT-T-TTACTTGTATTATA
1 TATTATTATTATTTTATATTA-TTAT-TTATA
*
37442906 TATTTATTAATTA-TTTATATATATTATGTAT-
1 TA-TTATT-ATTATTTTATAT-TATTATTTATA
37442937 TATT
1 TATT
37442941 TTTTTTGCAT
Statistics
Matches: 260, Mismatches: 47, Indels: 79
0.67 0.12 0.20
Matches are distributed among these distances:
27 7 0.03
28 8 0.03
29 27 0.10
30 81 0.31
31 40 0.15
32 32 0.12
33 23 0.09
34 23 0.09
35 7 0.03
36 9 0.03
37 3 0.01
ACGTcount: A:0.32, C:0.03, G:0.04, T:0.61
Consensus pattern (30 bp):
TATTATTATTATTTTATATTATTATTTATA
Found at i:37456504 original size:19 final size:19
Alignment explanation
Indices: 37456480--37456517 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
37456470 AAGGAAAATC
37456480 ATTACAATTAATTAAATTA
1 ATTACAATTAATTAAATTA
37456499 ATTACAATTAATTAAATTA
1 ATTACAATTAATTAAATTA
37456518 TATGATCTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (19 bp):
ATTACAATTAATTAAATTA
Found at i:37463507 original size:22 final size:23
Alignment explanation
Indices: 37463456--37463507 Score: 54
Period size: 22 Copynumber: 2.3 Consensus size: 23
37463446 CTTTTATTTA
* *
37463456 TATAAATAAAATAATAAATATGT
1 TATATATAAAATAATAAATATAT
* *
37463479 AAT-TATACAATAA-AAATATAT
1 TATATATAAAATAATAAATATAT
37463500 TATATATA
1 TATATATA
37463508 TATGATTATG
Statistics
Matches: 23, Mismatches: 5, Indels: 3
0.74 0.16 0.10
Matches are distributed among these distances:
21 9 0.39
22 12 0.52
23 2 0.09
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (23 bp):
TATATATAAAATAATAAATATAT
Found at i:37463539 original size:97 final size:97
Alignment explanation
Indices: 37463432--37463627 Score: 302
Period size: 97 Copynumber: 2.0 Consensus size: 97
37463422 AATTCATCTA
**
37463432 TTTAATTAATAACTCTTTTATTTATATAAATAAAATAATAAATATGTAATTATACAATAAAAATA
1 TTTAATTAATAACTCTTTTATTTATATAAATAAAATAATAAATACATAATTATACAATAAAAATA
*
37463497 TATTATATATATATGATTATGTTAAAAATATT
66 TATTATATATATATCATTATGTTAAAAATATT
* * *
37463529 TTTAATTAATAACTCTTTTATTTATATAAATAAATTAATAATTACATAATTATATAATAAAAATA
1 TTTAATTAATAACTCTTTTATTTATATAAATAAAATAATAAATACATAATTATACAATAAAAATA
* * * *
37463594 TTTTTTATATTTATCATTATGTTAAATATATT
66 TATTATATATATATCATTATGTTAAAAATATT
37463626 TT
1 TT
37463628 ATTTTTAAAA
Statistics
Matches: 89, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
97 89 1.00
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (97 bp):
TTTAATTAATAACTCTTTTATTTATATAAATAAAATAATAAATACATAATTATACAATAAAAATA
TATTATATATATATCATTATGTTAAAAATATT
Found at i:37463957 original size:13 final size:15
Alignment explanation
Indices: 37463927--37463958 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
37463917 TATTTTTTTA
37463927 TAATAGAAATATAAG
1 TAATAGAAATATAAG
37463942 TAATA-AAATA-AAG
1 TAATAGAAATATAAG
37463955 TAAT
1 TAAT
37463959 TACAACATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 5 0.29
15 5 0.29
ACGTcount: A:0.62, C:0.00, G:0.09, T:0.28
Consensus pattern (15 bp):
TAATAGAAATATAAG
Found at i:37464540 original size:3 final size:3
Alignment explanation
Indices: 37464532--37464567 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
37464522 ACCATCTCTA
37464532 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
37464568 TTGATTACAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:37466827 original size:26 final size:26
Alignment explanation
Indices: 37466790--37466840 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
37466780 TTGACGTGAT
*
37466790 AAATGATATAGATGTGATATGTTGAC
1 AAATGATATAGATGTGACATGTTGAC
*
37466816 AAATGATGTAGATGTGACATGTTGA
1 AAATGATATAGATGTGACATGTTGA
37466841 TATGTAATGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.37, C:0.04, G:0.25, T:0.33
Consensus pattern (26 bp):
AAATGATATAGATGTGACATGTTGAC
Found at i:37467003 original size:9 final size:9
Alignment explanation
Indices: 37466991--37467106 Score: 82
Period size: 9 Copynumber: 12.7 Consensus size: 9
37466981 TTAATTTTTT
37466991 TAAAAATTA
1 TAAAAATTA
37467000 TAAAAATTA
1 TAAAAATTA
37467009 TTAAAAATT-
1 -TAAAAATTA
37467018 TAAAAATGTTA
1 TAAAAA--TTA
*
37467029 TAGAAATT-
1 TAAAAATTA
* *
37467037 TGAATATT-
1 TAAAAATTA
37467045 TAAAAATTA
1 TAAAAATTA
37467054 TAAAAA-TA
1 TAAAAATTA
37467062 -AAAAATATA
1 TAAAAAT-TA
*
37467071 TTAATAATT-
1 -TAAAAATTA
37467080 TATAAAATTA
1 TA-AAAATTA
37467090 TAACAAATTGA
1 TAA-AAATT-A
37467101 TAAAAA
1 TAAAAA
37467107 AGTGCCATGA
Statistics
Matches: 86, Mismatches: 8, Indels: 25
0.72 0.07 0.21
Matches are distributed among these distances:
7 5 0.06
8 21 0.24
9 25 0.29
10 21 0.24
11 14 0.16
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.35
Consensus pattern (9 bp):
TAAAAATTA
Found at i:37467585 original size:12 final size:12
Alignment explanation
Indices: 37467568--37467601 Score: 54
Period size: 11 Copynumber: 3.0 Consensus size: 12
37467558 CCGGCCCGCC
37467568 TATATTAATTTT
1 TATATTAATTTT
37467580 TATATT-ATTTT
1 TATATTAATTTT
37467591 TATA-TAATTTT
1 TATATTAATTTT
37467602 AAAATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.05
11 14 0.67
12 6 0.29
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TATATTAATTTT
Found at i:37467862 original size:11 final size:11
Alignment explanation
Indices: 37467824--37467863 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
37467814 AATAACAACA
37467824 AAAATAGTAGC
1 AAAATAGTAGC
* * *
37467835 AACATACTAGT
1 AAAATAGTAGC
37467846 AAAATAGTAGC
1 AAAATAGTAGC
37467857 AAAATAG
1 AAAATAG
37467864 GGAGAAAACA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.55, C:0.10, G:0.15, T:0.20
Consensus pattern (11 bp):
AAAATAGTAGC
Found at i:37470811 original size:18 final size:17
Alignment explanation
Indices: 37470768--37470814 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 17
37470758 TTTTTTATAA
37470768 ATTTTTAT-AATTCTTT
1 ATTTTTATAAATTCTTT
*
37470784 ATAATGTTATAAATTTCTTT
1 AT--TTTTATAAA-TTCTTT
37470804 ATTTTTATAAA
1 ATTTTTATAAA
37470815 CTTTTAATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
16 2 0.08
18 13 0.52
19 2 0.08
20 8 0.32
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.60
Consensus pattern (17 bp):
ATTTTTATAAATTCTTT
Found at i:37471406 original size:141 final size:141
Alignment explanation
Indices: 37471188--37471450 Score: 402
Period size: 141 Copynumber: 1.9 Consensus size: 141
37471178 TTGTTTTTTC
** ** * *
37471188 TTCTTCTTCCTTCTTCCTCTTGTCACTTTGCCTTTTTCTTTTATGGGTTCTTTCAGTATTTTTGG
1 TTCTTCTTCCTTCTTCCTCTTGTCACTTTGCCTTTTTCTTTTATAAGTTCTTTCAACATTTCTGA
* *
37471253 ATTGCTTTGAAAAGAAATTTAAGAACATTTCTATG-TTTATTTTTTCTCTTATTCCTTTTTTTTT
66 ATTGCTTAGAAAAGAAATTTAAGAACATTTCTA-GATTCATTTTTTCTCTTATTCCTTTTTTTTT
37471317 TCGATAATTCAT
130 TCGATAATTCAT
*
37471329 TTCTTCTTCCTTCTTCCTCTTGTCACTTTGCCTTTTTCTTTTCTAAGTTCTTTCAACATTTCTGA
1 TTCTTCTTCCTTCTTCCTCTTGTCACTTTGCCTTTTTCTTTTATAAGTTCTTTCAACATTTCTGA
* * *
37471394 ATTGCTTAGAAAAGAAATTTAAGAACATTTTTAGATTCATTTTTTTTCTTCTTCCTT
66 ATTGCTTAGAAAAGAAATTTAAGAACATTTCTAGATTCATTTTTTCTCTTATTCCTT
37471451 CTTCCTCTCA
Statistics
Matches: 109, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
140 1 0.01
141 108 0.99
ACGTcount: A:0.18, C:0.19, G:0.09, T:0.54
Consensus pattern (141 bp):
TTCTTCTTCCTTCTTCCTCTTGTCACTTTGCCTTTTTCTTTTATAAGTTCTTTCAACATTTCTGA
ATTGCTTAGAAAAGAAATTTAAGAACATTTCTAGATTCATTTTTTCTCTTATTCCTTTTTTTTTT
CGATAATTCAT
Found at i:37478842 original size:19 final size:19
Alignment explanation
Indices: 37478815--37478854 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
37478805 ATAGGAGCAA
*
37478815 CACTTGATGAACAATCTTT
1 CACTCGATGAACAATCTTT
37478834 CACTCGATGAACAATCTTT
1 CACTCGATGAACAATCTTT
37478853 CA
1 CA
37478855 TCCAAAATCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.10, T:0.33
Consensus pattern (19 bp):
CACTCGATGAACAATCTTT
Found at i:37485880 original size:95 final size:95
Alignment explanation
Indices: 37485717--37485904 Score: 322
Period size: 95 Copynumber: 2.0 Consensus size: 95
37485707 GCTACGAAAG
* * *
37485717 ATATTGTAGGCAGGTCTGAGGCACGAGCACCTGCTAGGACATATGCCATTCGTGCCAGAGAAGAT
1 ATATTGCAGGCAGGTCTGAAGCACGAGCACCTGCTAGGACATATGCCATCCGTGCCAGAGAAGAT
37485782 GCCTCAGCACCCGATATTATTACTGGTAAA
66 GCCTCAGCACCCGATATTATTACTGGTAAA
* *
37485812 ATATTGCAGGCAGGTTTGAAGCACGAGCACCTGCTAGGATATATGCCATCCGTGCCAGAGAAGAT
1 ATATTGCAGGCAGGTCTGAAGCACGAGCACCTGCTAGGACATATGCCATCCGTGCCAGAGAAGAT
*
37485877 GCCTCAGCACCCGATGTTATTACTGGTA
66 GCCTCAGCACCCGATATTATTACTGGTA
37485905 CATTTTCTTT
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
95 87 1.00
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (95 bp):
ATATTGCAGGCAGGTCTGAAGCACGAGCACCTGCTAGGACATATGCCATCCGTGCCAGAGAAGAT
GCCTCAGCACCCGATATTATTACTGGTAAA
Found at i:37491624 original size:23 final size:22
Alignment explanation
Indices: 37491597--37491642 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 22
37491587 TGTGATGTCG
37491597 TTATCTT-ATAAATATGTATGAAT
1 TTATCTTGA-AAATATGT-TGAAT
37491620 TTATCTTGAAAATATGTTGAAT
1 TTATCTTGAAAATATGTTGAAT
37491642 T
1 T
37491643 GGTTTGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 6 0.27
23 15 0.68
24 1 0.05
ACGTcount: A:0.37, C:0.04, G:0.11, T:0.48
Consensus pattern (22 bp):
TTATCTTGAAAATATGTTGAAT
Found at i:37491907 original size:40 final size:40
Alignment explanation
Indices: 37491852--37491933 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
37491842 TTAATCTACT
37491852 TTACTAATTAAAGAGTACAACACCCAATCTTTACCTTTTG
1 TTACTAATTAAAGAGTACAACACCCAATCTTTACCTTTTG
37491892 TTACTAATTAAAGAGTACAACACCCAATCTTTACCTTTTG
1 TTACTAATTAAAGAGTACAACACCCAATCTTTACCTTTTG
37491932 TT
1 TT
37491934 TTTTCTTTTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.34, C:0.22, G:0.07, T:0.37
Consensus pattern (40 bp):
TTACTAATTAAAGAGTACAACACCCAATCTTTACCTTTTG
Found at i:37493705 original size:60 final size:60
Alignment explanation
Indices: 37493565--37493723 Score: 142
Period size: 60 Copynumber: 2.6 Consensus size: 60
37493555 CTAAGGCATA
** * * * * *
37493565 AGCAACAACATGGGAGGAGTTGTCCTTACCAAATGGAGGCCTTAGCAACCCCAAGCAATC
1 AGCAACAACATCCGAGGAGCTATCATTACCAAATGGAGGACTGAGCAACCCCAAGCAATC
* * * * *
37493625 A-AAAGCAACATCCGAAGAGCTATCATTACCAAATGGAGGACTGGGCAACCCCAAGCCATT
1 AGCAA-CAACATCCGAGGAGCTATCATTACCAAATGGAGGACTGAGCAACCCCAAGCAATC
** * *
37493685 AGCAACAACATTTGAGGAGCTACCCA-CACCAAATGGAGG
1 AGCAACAACATCCGAGGAGCTA-TCATTACCAAATGGAGG
37493724 CCTTGGCATT
Statistics
Matches: 78, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
59 2 0.03
60 72 0.92
61 4 0.05
ACGTcount: A:0.36, C:0.26, G:0.22, T:0.15
Consensus pattern (60 bp):
AGCAACAACATCCGAGGAGCTATCATTACCAAATGGAGGACTGAGCAACCCCAAGCAATC
Found at i:37495097 original size:5 final size:5
Alignment explanation
Indices: 37495087--37495113 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
37495077 TTGTTATTGT
37495087 AAATA AAATA AAATA AAATA AAATA AA
1 AAATA AAATA AAATA AAATA AAATA AA
37495114 GAACACACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAATA
Done.