Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 143 of 310
Found at i:46601046 original size:9 final size:9
Alignment explanation
Indices: 46601032--46601099 Score: 56
Period size: 9 Copynumber: 7.8 Consensus size: 9
46601022 TTTAAAAATT
46601032 ATTTTTATA
1 ATTTTTATA
46601041 ATTTTTAT-
1 ATTTTTATA
46601049 ATTTTTAATA
1 ATTTTT-ATA
46601059 A--TTTATA
1 ATTTTTATA
* *
46601066 ATTTATAAA
1 ATTTTTATA
46601075 ATATTTT-TAA
1 AT-TTTTAT-A
46601085 ATTTTTA-A
1 ATTTTTATA
46601093 ATTTTTA
1 ATTTTTA
46601100 AAAATTAATT
Statistics
Matches: 48, Mismatches: 4, Indels: 15
0.72 0.06 0.22
Matches are distributed among these distances:
7 4 0.08
8 17 0.35
9 20 0.42
10 7 0.15
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (9 bp):
ATTTTTATA
Found at i:46601061 original size:45 final size:44
Alignment explanation
Indices: 46601012--46601115 Score: 129
Period size: 44 Copynumber: 2.3 Consensus size: 44
46601002 CATTAGCAAT
* *
46601012 TAATTAATTTTTTA-AAAATTATTTTTATAATTTTTATATTTTTAA
1 TAATTAATTATTTATAAAA-TATTTTTA-AATTTTTAAATTTTTAA
* *
46601057 TAATTTATAATTTATAAAATATTTTTAAATTTTTAAATTTTTAA
1 TAATTAATTATTTATAAAATATTTTTAAATTTTTAAATTTTTAA
* *
46601101 AAATTAATTAATTAT
1 TAATTAATTATTTAT
46601116 TGATGTGACC
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
44 27 0.54
45 19 0.38
46 4 0.08
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (44 bp):
TAATTAATTATTTATAAAATATTTTTAAATTTTTAAATTTTTAA
Found at i:46601090 original size:8 final size:8
Alignment explanation
Indices: 46601032--46601101 Score: 52
Period size: 8 Copynumber: 8.1 Consensus size: 8
46601022 TTTAAAAATT
46601032 ATTTTTATA
1 ATTTTTA-A
*
46601041 ATTTTTAT
1 ATTTTTAA
46601049 ATTTTT-A
1 ATTTTTAA
*
46601056 ATAATTTATA
1 AT-TTTTA-A
*
46601066 ATTTATAAAA
1 ATTT-T-TAA
46601076 TATTTTTAA
1 -ATTTTTAA
46601085 ATTTTTAA
1 ATTTTTAA
46601093 ATTTTTAA
1 ATTTTTAA
46601101 A
1 A
46601102 AATTAATTAA
Statistics
Matches: 49, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
7 2 0.04
8 26 0.53
9 10 0.20
10 6 0.12
11 5 0.10
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (8 bp):
ATTTTTAA
Found at i:46602481 original size:2 final size:2
Alignment explanation
Indices: 46602474--46602503 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
46602464 TACAATTTAA
*
46602474 AT AT AT AT AT AT AT AT AT AT AT AT AG AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
46602504 TGTCTTGTGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:46602546 original size:34 final size:35
Alignment explanation
Indices: 46602507--46602575 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 35
46602497 TAGATATTGT
*
46602507 CTTGTGGTCC-AAAGTAGAGAAAAATATATGATGA
1 CTTGTGGTCCAAAAATAGAGAAAAATATATGATGA
*
46602541 CTTGTGGTCCAAAAATAGAGTAAAATATATGATGA
1 CTTGTGGTCCAAAAATAGAGAAAAATATATGATGA
46602576 TGACTTCAGG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 10 0.31
35 22 0.69
ACGTcount: A:0.42, C:0.09, G:0.22, T:0.28
Consensus pattern (35 bp):
CTTGTGGTCCAAAAATAGAGAAAAATATATGATGA
Found at i:46608686 original size:19 final size:19
Alignment explanation
Indices: 46608662--46608706 Score: 90
Period size: 19 Copynumber: 2.4 Consensus size: 19
46608652 GAAGTTGACT
46608662 GGAGATCTTCAATCTTGAA
1 GGAGATCTTCAATCTTGAA
46608681 GGAGATCTTCAATCTTGAA
1 GGAGATCTTCAATCTTGAA
46608700 GGAGATC
1 GGAGATC
46608707 CTACTTCTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (19 bp):
GGAGATCTTCAATCTTGAA
Found at i:46611143 original size:6 final size:6
Alignment explanation
Indices: 46611125--46611178 Score: 72
Period size: 6 Copynumber: 8.8 Consensus size: 6
46611115 AAAGTCTAGG
* * *
46611125 AAAATA CAAATA AACATA AAAATA AAAATA AAAACTA AGAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAA-TA AAAATA AAAATA
46611174 AAAAT
1 AAAAT
46611179 TAAATTATAT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
6 36 0.88
7 5 0.12
ACGTcount: A:0.76, C:0.06, G:0.02, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:46611169 original size:19 final size:18
Alignment explanation
Indices: 46611125--46611178 Score: 72
Period size: 19 Copynumber: 2.9 Consensus size: 18
46611115 AAAGTCTAGG
* *
46611125 AAAATACAAATAAACATA
1 AAAATAAAAATAAAAATA
46611143 AAAATAAAAATAAAAACTA
1 AAAATAAAAATAAAAA-TA
*
46611162 AGAATAAAAATAAAAAT
1 AAAATAAAAATAAAAAT
46611179 TAAATTATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
18 15 0.47
19 17 0.53
ACGTcount: A:0.76, C:0.06, G:0.02, T:0.17
Consensus pattern (18 bp):
AAAATAAAAATAAAAATA
Found at i:46612811 original size:12 final size:15
Alignment explanation
Indices: 46612777--46612826 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
46612767 AAAATAAAAC
*
46612777 AATAATAA-AGAAAT
1 AATAATAATAGTAAT
*
46612791 AATTAATAAAAAG-AAT
1 AA-TAAT-AATAGTAAT
46612807 AATAATAATAGTAAT
1 AATAATAATAGTAAT
46612822 AATAA
1 AATAA
46612827 GAAGGAAAGA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
14 6 0.19
15 16 0.52
16 7 0.23
17 2 0.06
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (15 bp):
AATAATAATAGTAAT
Found at i:46614504 original size:43 final size:43
Alignment explanation
Indices: 46614456--46614563 Score: 155
Period size: 43 Copynumber: 2.5 Consensus size: 43
46614446 GATTAACGAG
*
46614456 ATGTGATTATGTGTAAGACCATGACTGGGACATTGGCATCATT
1 ATGTGATTATGTGTAAGACCATGACCGGGACATTGGCATCATT
* **
46614499 ATGTGATTATGTGTAAGACCATGTCCGGGGTATTGGCATCATT
1 ATGTGATTATGTGTAAGACCATGACCGGGACATTGGCATCATT
*
46614542 ATTTGATT-TCGTGTAAGACCAT
1 ATGTGATTAT-GTGTAAGACCAT
46614564 AGGTGGGCTA
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
42 1 0.02
43 58 0.98
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.35
Consensus pattern (43 bp):
ATGTGATTATGTGTAAGACCATGACCGGGACATTGGCATCATT
Found at i:46619561 original size:20 final size:20
Alignment explanation
Indices: 46619510--46619562 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
46619500 ACAGCCTCGG
*
46619510 ACACGTCCGTGTGACCTTCC
1 ACACGCCCGTGTGACCTTCC
**
46619530 ACACGCTTGTGTGA-CTTCCC
1 ACACGCCCGTGTGACCTT-CC
46619550 ACACGCCCGTGTG
1 ACACGCCCGTGTG
46619563 GTATGGCCAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
19 3 0.11
20 24 0.89
ACGTcount: A:0.15, C:0.38, G:0.23, T:0.25
Consensus pattern (20 bp):
ACACGCCCGTGTGACCTTCC
Found at i:46623157 original size:14 final size:14
Alignment explanation
Indices: 46623135--46623177 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
46623125 AGAAGCAAAT
* *
46623135 AAAAGAAAAATTAG
1 AAAATAAAAATTAA
46623149 AAAATAAAAATTAA
1 AAAATAAAAATTAA
46623163 AAAATAAAAA-TAA
1 AAAATAAAAATTAA
46623176 AA
1 AA
46623178 TGTAATAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
13 5 0.19
14 22 0.81
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.16
Consensus pattern (14 bp):
AAAATAAAAATTAA
Found at i:46630024 original size:47 final size:44
Alignment explanation
Indices: 46629916--46630129 Score: 202
Period size: 46 Copynumber: 4.6 Consensus size: 44
46629906 GTGTGCCAGT
* *
46629916 GTAAGACATGTCTGGGACATGCATCGGCCACATT-ATGA-GAGCCAGT
1 GTAAGACATGTCTGGGACATGCATCGG---CATTGA-GACGAGCTAGA
*
46629962 GTAAGACCATATCTGGGACATGGCATCGGCATTGAGACGACAGCTAGA
1 GTAAGA-CATGTCTGGGACAT-GCATCGGCATTGAGACG--AGCTAGA
* * * *
46630010 GTAAGACATGTCTGGGACATGCATCGGC-TACGAGATGTG-TCAGT
1 GTAAGACATGTCTGGGACATGCATCGGCAT-TGAGACGAGCT-AGA
*
46630054 GTAAGACCATATCTGGGACATGGCATCGGCATTGAGACGACAGCTAGA
1 GTAAGA-CATGTCTGGGACAT-GCATCGGCATTGAGACG--AGCTAGA
46630102 GTAAGACATGTCTGGGACATGCATCGGC
1 GTAAGACATGTCTGGGACATGCATCGGC
46630130 TACGAGATGT
Statistics
Matches: 140, Mismatches: 14, Indels: 28
0.77 0.08 0.15
Matches are distributed among these distances:
43 1 0.01
44 9 0.06
45 20 0.14
46 42 0.30
47 40 0.29
48 27 0.19
49 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.30, T:0.21
Consensus pattern (44 bp):
GTAAGACATGTCTGGGACATGCATCGGCATTGAGACGAGCTAGA
Found at i:46630200 original size:92 final size:92
Alignment explanation
Indices: 46629916--46630176 Score: 434
Period size: 92 Copynumber: 2.8 Consensus size: 92
46629906 GTGTGCCAGT
* * * *
46629916 GTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCCAGTGTAAGACCATATCTGGGA
1 GTAAGACATGTCTGGGACATGCATCGGCTACGA-GAT--GTGTCAGTGTAAGACCATATCTGGGA
46629980 CATGGCATCGGCATTGAGACGACAGCTAGA
63 CATGGCATCGGCATTGAGACGACAGCTAGA
46630010 GTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGTCAGTGTAAGACCATATCTGGGACAT
1 GTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGTCAGTGTAAGACCATATCTGGGACAT
46630075 GGCATCGGCATTGAGACGACAGCTAGA
66 GGCATCGGCATTGAGACGACAGCTAGA
*
46630102 GTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGTCAGTGTAAGACCATATCCGGGACAT
1 GTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGTCAGTGTAAGACCATATCTGGGACAT
*
46630167 GGAATCGGCA
66 GGCATCGGCA
46630177 AGTATAGAGG
Statistics
Matches: 160, Mismatches: 6, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
92 127 0.79
94 32 0.20
95 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.30, T:0.21
Consensus pattern (92 bp):
GTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGTCAGTGTAAGACCATATCTGGGACAT
GGCATCGGCATTGAGACGACAGCTAGA
Found at i:46637630 original size:46 final size:46
Alignment explanation
Indices: 46637480--46637696 Score: 176
Period size: 46 Copynumber: 4.7 Consensus size: 46
46637470 TTATTTGTGT
* * *
46637480 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-A-TTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATAT-A-A
* * * * *
46637526 GCTAGTGTAAGAACATGTCTGGGACATGGCATCAGCATTGAGACGA-GA
1 GCCAGTGTAAG-ACATGTCTGGGACAT-GCATCAGCCTCGAGA-TATAA
** * *
46637574 GTTAGAGTAAGACATGTATGGGACATGCATCAGCCTCGAGATATAA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATAA
* * *
46637620 GCCAGTGTAAGACATGTCTGGGTCATGCATC-GGCTACGAGATGT--
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCT-CGAGATATAA
*
46637664 GTCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
46637697 GACACGTATA
Statistics
Matches: 138, Mismatches: 24, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
44 11 0.08
45 17 0.12
46 62 0.45
47 29 0.21
48 17 0.12
49 1 0.01
51 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATAA
Found at i:46637779 original size:50 final size:48
Alignment explanation
Indices: 46637482--46637889 Score: 217
Period size: 48 Copynumber: 8.6 Consensus size: 48
46637472 ATTTGTGTGC
46637482 CAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCAC--ATTATGA-GAG-
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGG-CACGGA-TA-GAGGAGT
* * ** *
46637527 CTAGTGTAAGAACATGTCTGGGACATGGCATCAGCATTGAGACGA-GAGT
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATA-GAGGAGT
* * * * * * *
46637576 TAGAGTAAGA-CATGTATGGGACAT-GCATCAGCCTCGAGATATA--AGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATC-GGCACG-GATAGAGGAGT
* * *
46637622 CAGTGTAAGA-CATGTCTGGGTCAT-GCATCGGCTAC-G--AGATGTGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACGGATAGAGGAGT
* * *
46637666 CAGTGTAAGACCATGTCTGGGACATGGCATCGACACGTATAGAGGTGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATAGAGGAGT
* * *
46637714 CAGTGTAAGACCATGTCTAGGACATGGCATCGGTACGGATATGTGAGAG-
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATA-GAG-GAGT
* * ** * * *
46637763 CTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCAAATTCGA-TAAT
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCGG-CACGGA-TAGAGGAGT
** * * * * * *
46637813 CAGTGTAAGATTATATCTAGGACATGGCATC-G-ACTTGATGGATGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GGATAGAGGAGT
*
46637860 CAGTGTAAGACCATGTCTAGGACATGGCAT
1 CAGTGTAAGACCATGTCTGGGACATGGCAT
46637890 TGGTACTACA
Statistics
Matches: 280, Mismatches: 59, Indels: 46
0.73 0.15 0.12
Matches are distributed among these distances:
42 2 0.01
44 12 0.04
45 18 0.06
46 53 0.19
47 60 0.21
48 68 0.24
49 30 0.11
50 33 0.12
51 3 0.01
52 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (48 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATAGAGGAGT
Found at i:46639432 original size:44 final size:44
Alignment explanation
Indices: 46639406--46639511 Score: 160
Period size: 44 Copynumber: 2.4 Consensus size: 44
46639396 AGTTGATATG
*
46639406 GCACTAAGTGTGTGAGATTGTTATAGCTTTGGCTAATTATTAAT
1 GCACTAAGTGTGTGAGATTGTTATAGCTTCGGCTAATTATTAAT
* * * *
46639450 GCATTAAGTGTGTGAGATTGTTATAACTTTGGCTAATCATTAAT
1 GCACTAAGTGTGTGAGATTGTTATAGCTTCGGCTAATTATTAAT
46639494 GCACTAAGTGTGTG-GATT
1 GCACTAAGTGTGTGAGATT
46639512 CTTAAAGTTT
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
43 4 0.07
44 54 0.93
ACGTcount: A:0.27, C:0.09, G:0.24, T:0.40
Consensus pattern (44 bp):
GCACTAAGTGTGTGAGATTGTTATAGCTTCGGCTAATTATTAAT
Found at i:46641968 original size:46 final size:45
Alignment explanation
Indices: 46641901--46642068 Score: 155
Period size: 46 Copynumber: 3.6 Consensus size: 45
46641891 CCCGCCCTTA
* * *
46641901 AGTGAACTTGAACTCAACTCAACGAGCTCGGGCGTTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCAT
*
46641946 GAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-T
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCAT
* * * *
46641994 CA-CGAACTGGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCAT
*
46642039 AGGTGAACTCGGACTCAACTCAATGAGTTC
1 A-GTGAACTCGGACTCAACTCAACGAGTTC
46642069 AGATGCTCAA
Statistics
Matches: 99, Mismatches: 13, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
45 1 0.01
46 52 0.53
47 27 0.27
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCAT
Found at i:46642528 original size:30 final size:30
Alignment explanation
Indices: 46642494--46642553 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
46642484 ATTTAATACG
*
46642494 AACTTTTAAAAAATTATACTTTTGCCCCTA
1 AACTTTTAAAAAATTACACTTTTGCCCCTA
** *
46642524 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTTAAAAAATTACACTTTTGCCCCTA
46642554 GGCTCGAGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.23, G:0.05, T:0.40
Consensus pattern (30 bp):
AACTTTTAAAAAATTACACTTTTGCCCCTA
Found at i:46653216 original size:136 final size:136
Alignment explanation
Indices: 46653012--46653346 Score: 548
Period size: 136 Copynumber: 2.5 Consensus size: 136
46653002 CATTTATATT
* * *
46653012 AATAAACTCAAATAACCAATTATAAAAAA-ATGCTCA-CACTTTAAATACGAAAAACCGATATAA
1 AATAAACTCAACTAACCAATTATAAAAAATATGCTCATAAC-TTAAATATGAAAAACCGATATAA
* *
46653075 CTTAAATACGAAATAATAAATAAATTAATATAACATACAATTATATTAATAAACACAATTCCCTA
65 CTTAAATACGAAATAATAAATAAATTAATATAACATACAATTACATTAATAAACACAATTCCCCA
46653140 AACATTA
130 AACATTA
* *
46653147 AATAAACTCAACTGACCAATTATAAAAAATATGCTCATAACTTAAATATGAAAAACTGATATAAC
1 AATAAACTCAACTAACCAATTATAAAAAATATGCTCATAACTTAAATATGAAAAACCGATATAAC
46653212 TTAAATACGAAATAATAAATAAATTAATATAACATACAATTACATTAATAAACACAATTCCCCAA
66 TTAAATACGAAATAATAAATAAATTAATATAACATACAATTACATTAATAAACACAATTCCCCAA
46653277 ACATTA
131 ACATTA
* * * *
46653283 AATAAACTGAACTAACCAATTATAAAAAATATGCCCATACCTTAAATATGAAAATCCGATATAA
1 AATAAACTCAACTAACCAATTATAAAAAATATGCTCATAACTTAAATATGAAAAACCGATATAA
46653347 GATTCTTCAA
Statistics
Matches: 185, Mismatches: 13, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
135 27 0.15
136 156 0.84
137 2 0.01
ACGTcount: A:0.54, C:0.16, G:0.04, T:0.27
Consensus pattern (136 bp):
AATAAACTCAACTAACCAATTATAAAAAATATGCTCATAACTTAAATATGAAAAACCGATATAAC
TTAAATACGAAATAATAAATAAATTAATATAACATACAATTACATTAATAAACACAATTCCCCAA
ACATTA
Found at i:46656932 original size:15 final size:15
Alignment explanation
Indices: 46656912--46656941 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
46656902 CTTGGAACCC
46656912 TTGTTTGCCATTTTT
1 TTGTTTGCCATTTTT
46656927 TTGTTTGCCATTTTT
1 TTGTTTGCCATTTTT
46656942 ATTATTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.07, C:0.13, G:0.13, T:0.67
Consensus pattern (15 bp):
TTGTTTGCCATTTTT
Found at i:46657391 original size:23 final size:23
Alignment explanation
Indices: 46657347--46657393 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 23
46657337 AAAAAGGTAC
46657347 TATATTTGTTGTATAATCTAATT
1 TATATTTGTTGTATAATCTAATT
46657370 TATATTT-TTGTTACTAAT-TAATT
1 TATATTTGTTG-TA-TAATCTAATT
46657393 T
1 T
46657394 TTTTAAGTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 3 0.14
23 15 0.68
24 4 0.18
ACGTcount: A:0.30, C:0.04, G:0.06, T:0.60
Consensus pattern (23 bp):
TATATTTGTTGTATAATCTAATT
Found at i:46657770 original size:3 final size:3
Alignment explanation
Indices: 46657762--46657787 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
46657752 TAGTAATAAC
46657762 GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GA
46657788 GATAATGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.31
Consensus pattern (3 bp):
GAT
Found at i:46658372 original size:52 final size:52
Alignment explanation
Indices: 46658294--46658397 Score: 208
Period size: 52 Copynumber: 2.0 Consensus size: 52
46658284 AGAACAAAAT
46658294 AGCAAATTATAAGTTCATAGGGAAACACCTTTTTAGCAAGATCAATACTATC
1 AGCAAATTATAAGTTCATAGGGAAACACCTTTTTAGCAAGATCAATACTATC
46658346 AGCAAATTATAAGTTCATAGGGAAACACCTTTTTAGCAAGATCAATACTATC
1 AGCAAATTATAAGTTCATAGGGAAACACCTTTTTAGCAAGATCAATACTATC
46658398 CCTAGGTTAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.29
Consensus pattern (52 bp):
AGCAAATTATAAGTTCATAGGGAAACACCTTTTTAGCAAGATCAATACTATC
Found at i:46660726 original size:20 final size:20
Alignment explanation
Indices: 46660698--46660736 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
46660688 AAACATACAT
* *
46660698 TTCACATACAATTTAATCAA
1 TTCAAATACAATTCAATCAA
46660718 TTCAAATACAATTCAATCA
1 TTCAAATACAATTCAATCA
46660737 CAACCAATCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
TTCAAATACAATTCAATCAA
Found at i:46662227 original size:48 final size:48
Alignment explanation
Indices: 46662170--46662342 Score: 186
Period size: 48 Copynumber: 3.6 Consensus size: 48
46662160 CTCAGAGCCA
* * *
46662170 ATATCATGGCCTGAAGCTAAATCAATGAAGCTAACACCCAAAGTGCCG
1 ATATCATGGCCCGAAGCCAAATCAATGAAGCTAGCACCCAAAGTGCCG
* * * *
46662218 ATATCATGGCCCGAAGCCAAATCGATGTAA-CTCGCACCCAAAGTTCCA
1 ATATCATGGCCCGAAGCCAAATCAATG-AAGCTAGCACCCAAAGTGCCG
* ** * * * * * *
46662266 ATATCATGACTTGAAGCCACATCAATAAAGCTTGCACACGAAGTGCTG
1 ATATCATGGCCCGAAGCCAAATCAATGAAGCTAGCACCCAAAGTGCCG
46662314 ATATCATGGCCCGAAGCCAAATCAATGAA
1 ATATCATGGCCCGAAGCCAAATCAATGAA
46662343 TTCCCTAATG
Statistics
Matches: 99, Mismatches: 24, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
47 2 0.02
48 95 0.96
49 2 0.02
ACGTcount: A:0.36, C:0.26, G:0.18, T:0.20
Consensus pattern (48 bp):
ATATCATGGCCCGAAGCCAAATCAATGAAGCTAGCACCCAAAGTGCCG
Found at i:46669811 original size:12 final size:13
Alignment explanation
Indices: 46669794--46669827 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
46669784 TGTAACTCGA
*
46669794 CATAAATATGC-T
1 CATAAACATGCTT
46669806 CATAAACATGCTT
1 CATAAACATGCTT
46669819 CATAAACAT
1 CATAAACAT
46669828 ATTTTTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 10 0.50
13 10 0.50
ACGTcount: A:0.44, C:0.21, G:0.06, T:0.29
Consensus pattern (13 bp):
CATAAACATGCTT
Found at i:46671761 original size:24 final size:23
Alignment explanation
Indices: 46671717--46671762 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
46671707 CATTTTTATT
*
46671717 TTATTTTTTTGGAAATATGAAAA
1 TTATTTTTTAGGAAATATGAAAA
* *
46671740 TTATTTTTATAGGACATTTGAAA
1 TTATTTTT-TAGGAAATATGAAA
46671763 TATACAATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.37, C:0.02, G:0.13, T:0.48
Consensus pattern (23 bp):
TTATTTTTTAGGAAATATGAAAA
Found at i:46674092 original size:29 final size:27
Alignment explanation
Indices: 46673975--46674146 Score: 155
Period size: 27 Copynumber: 6.3 Consensus size: 27
46673965 GCCACACGGT
* * *
46673975 TTCCATTTCTTAGATAGCTACAAAGGC
1 TTCCATCTCTTAGATCGCCACAAAGGC
* * **
46674002 TTTCATCTCTTAGATCACCATGAAGGC
1 TTCCATCTCTTAGATCGCCACAAAGGC
* *
46674029 TTCCATTTCTTAGATCGCCACAAAGGA
1 TTCCATCTCTTAGATCGCCACAAAGGC
* ** *
46674056 TTTCATCTCTTAGATCGGGGGATAAAGGC
1 TTCCATCTCTTAGATC--GCCACAAAGGC
* **
46674085 TTCCATCTCTTAGATTGTTACAAAGGC
1 TTCCATCTCTTAGATCGCCACAAAGGC
* **
46674112 TTCCATCTCTTAAATCTTCACAAAGGC
1 TTCCATCTCTTAGATCGCCACAAAGGC
46674139 TTCCATCT
1 TTCCATCT
46674147 TTCTGGCATG
Statistics
Matches: 115, Mismatches: 28, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
27 94 0.82
29 21 0.18
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.34
Consensus pattern (27 bp):
TTCCATCTCTTAGATCGCCACAAAGGC
Found at i:46674108 original size:56 final size:54
Alignment explanation
Indices: 46673975--46674144 Score: 187
Period size: 54 Copynumber: 3.1 Consensus size: 54
46673965 GCCACACGGT
*
46673975 TTCCATTTCTTAGATAGCTACAAAGGCTTTCATCTCTTAGATCACCATGAAGGC
1 TTCCATTTCTTAGATAGCTACAAAGGCTTTCATCTCTTAGATCACCATAAAGGC
* * * ***
46674029 TTCCATTTCTTAGATCGCCACAAAGGATTTCATCTCTTAGATCGGGGGATAAAGGC
1 TTCCATTTCTTAGATAGCTACAAAGGCTTTCATCTCTTAGATC--ACCATAAAGGC
* * * * * ** *
46674085 TTCCATCTCTTAGATTGTTACAAAGGCTTCCATCTCTTAAATCTTCACAAAGGC
1 TTCCATTTCTTAGATAGCTACAAAGGCTTTCATCTCTTAGATCACCATAAAGGC
46674139 TTCCAT
1 TTCCAT
46674145 CTTTCTGGCA
Statistics
Matches: 96, Mismatches: 18, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
54 53 0.55
56 43 0.45
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.34
Consensus pattern (54 bp):
TTCCATTTCTTAGATAGCTACAAAGGCTTTCATCTCTTAGATCACCATAAAGGC
Found at i:46675582 original size:37 final size:37
Alignment explanation
Indices: 46675519--46675591 Score: 98
Period size: 37 Copynumber: 2.0 Consensus size: 37
46675509 TACAAGCCAT
46675519 AATCATTATAAGCCACATATCATGGCTATAT-ATAACG
1 AATCATTATAAGCCACATATCATGGCTA-ATCATAACG
46675556 AATCATTATAAGCCA-ATA-CATTTGGCTAATCATAAC
1 AATCATTATAAGCCACATATCA--TGGCTAATCATAAC
46675592 AACATCTATC
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
35 2 0.06
36 5 0.15
37 26 0.79
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.30
Consensus pattern (37 bp):
AATCATTATAAGCCACATATCATGGCTAATCATAACG
Found at i:46677031 original size:43 final size:43
Alignment explanation
Indices: 46676983--46677075 Score: 150
Period size: 43 Copynumber: 2.2 Consensus size: 43
46676973 TCCGGGTTAG
*
46676983 ATCCTTTCTATATTGAGATCAACGGATTATCTGTCCAGGCTAA
1 ATCCTTTCTATATTGAGATCAACGGATTACCTGTCCAGGCTAA
* *
46677026 ATCCTTTCTATATTGAGATCAACGGGTTACCTGTCCGGGCTAA
1 ATCCTTTCTATATTGAGATCAACGGATTACCTGTCCAGGCTAA
*
46677069 ATTCTTT
1 ATCCTTT
46677076 TCTACAACAC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.37
Consensus pattern (43 bp):
ATCCTTTCTATATTGAGATCAACGGATTACCTGTCCAGGCTAA
Found at i:46677319 original size:17 final size:17
Alignment explanation
Indices: 46677297--46677339 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
46677287 ATTTCAATTA
**
46677297 AAATGTCAATTTCCATC
1 AAATGTCAATTAACATC
*
46677314 AAATGTCCATTAACATC
1 AAATGTCAATTAACATC
46677331 AAAT-TCAAT
1 AAATGTCAAT
46677340 ACAATCATAG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.42, C:0.21, G:0.05, T:0.33
Consensus pattern (17 bp):
AAATGTCAATTAACATC
Found at i:46678069 original size:12 final size:12
Alignment explanation
Indices: 46678054--46678085 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
46678044 AAAATTTGGC
46678054 TTTTAATTTTGT
1 TTTTAATTTTGT
46678066 TTTTAATTTTGT
1 TTTTAATTTTGT
46678078 TTTTAATT
1 TTTTAATT
46678086 CACTTTAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.19, C:0.00, G:0.06, T:0.75
Consensus pattern (12 bp):
TTTTAATTTTGT
Found at i:46680939 original size:33 final size:33
Alignment explanation
Indices: 46680897--46680962 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
46680887 CCTCATAATC
*
46680897 AAGTTTCGTTCTAATAAAATCTGTTTATATTAT
1 AAGTTTCGTTCTAATAAAATCTGATTATATTAT
46680930 AAGTTTCGTTCTAATAAAATCTGATTATATTAT
1 AAGTTTCGTTCTAATAAAATCTGATTATATTAT
46680963 CTTAATAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.47
Consensus pattern (33 bp):
AAGTTTCGTTCTAATAAAATCTGATTATATTAT
Found at i:46683992 original size:16 final size:16
Alignment explanation
Indices: 46683971--46684011 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
46683961 CAATATTAAT
*
46683971 GTCAATCGAGTTAAAA
1 GTCAATCGAATTAAAA
46683987 GTCAATCGAATTAAAA
1 GTCAATCGAATTAAAA
*
46684003 CTCAATCGA
1 GTCAATCGA
46684012 TTTCTATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.44, C:0.17, G:0.15, T:0.24
Consensus pattern (16 bp):
GTCAATCGAATTAAAA
Found at i:46685970 original size:13 final size:13
Alignment explanation
Indices: 46685952--46685981 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
46685942 ACTCACTTTT
46685952 TAATTGAAATTTA
1 TAATTGAAATTTA
46685965 TAATTGAAATTTA
1 TAATTGAAATTTA
46685978 -AATT
1 TAATT
46685982 AATCAAGATC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 4 0.24
13 13 0.76
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (13 bp):
TAATTGAAATTTA
Found at i:46698756 original size:6 final size:6
Alignment explanation
Indices: 46698745--46698769 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
46698735 AATTTTTAAT
46698745 AATATA AATATA AATATA AATATA A
1 AATATA AATATA AATATA AATATA A
46698770 GTTTTGAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
AATATA
Found at i:46705760 original size:23 final size:24
Alignment explanation
Indices: 46705719--46705773 Score: 94
Period size: 23 Copynumber: 2.3 Consensus size: 24
46705709 TCTCCTCTCC
46705719 CCCTCTCTTCTTTTTTTTTTCTTT
1 CCCTCTCTTCTTTTTTTTTTCTTT
46705743 CCCTCTCTTC-TTTTTTTTTCTTT
1 CCCTCTCTTCTTTTTTTTTTCTTT
*
46705766 TCCTCTCT
1 CCCTCTCT
46705774 CAACTGACTT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 20 0.67
24 10 0.33
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (24 bp):
CCCTCTCTTCTTTTTTTTTTCTTT
Found at i:46706371 original size:3 final size:3
Alignment explanation
Indices: 46706363--46706387 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
46706353 ATATTTCAAC
46706363 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
46706388 CCAATGTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:46706913 original size:22 final size:24
Alignment explanation
Indices: 46706866--46706927 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 24
46706856 TATGTAAAGA
*
46706866 GTTTTAATATTATATTATATATAT
1 GTTTTAATATTATATTATATACAT
46706890 GTTTT-ATA-TATATTATGA-ACAT
1 GTTTTAATATTATATTAT-ATACAT
46706912 GTATTTTCAATATTAT
1 G--TTTT-AATATTAT
46706928 TAGTTAAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
22 12 0.39
23 4 0.13
24 9 0.29
26 3 0.10
27 3 0.10
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.55
Consensus pattern (24 bp):
GTTTTAATATTATATTATATACAT
Found at i:46710253 original size:34 final size:34
Alignment explanation
Indices: 46710209--46710292 Score: 125
Period size: 34 Copynumber: 2.4 Consensus size: 34
46710199 CAGTAATGGT
*
46710209 TCAGTCTCAGTTA-AGGCCTTAGCCCATTACAGTA
1 TCAGTATCAGTTAGA-GCCTTAGCCCATTACAGTA
*
46710243 TCAGTATCAGTTTGAGCCTTAGCCCATTACAGTA
1 TCAGTATCAGTTAGAGCCTTAGCCCATTACAGTA
46710277 TCAGTATCAGTATAGA
1 TCAGTATCAGT-TAGA
46710293 TATACAATCA
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
34 41 0.91
35 4 0.09
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.31
Consensus pattern (34 bp):
TCAGTATCAGTTAGAGCCTTAGCCCATTACAGTA
Found at i:46712491 original size:19 final size:19
Alignment explanation
Indices: 46712455--46712493 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
46712445 TTTTCATCAT
* *
46712455 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
46712474 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
46712493 A
1 A
46712494 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:46712997 original size:55 final size:56
Alignment explanation
Indices: 46712932--46713046 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
46712922 AGCATGGCTG
* *
46712932 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
46712988 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
46713043 CCAG
1 CCAG
46713047 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.56
56 22 0.42
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:46713009 original size:27 final size:27
Alignment explanation
Indices: 46712957--46713046 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
46712947 GTGACAGAGT
46712957 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
46712986 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
46713013 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
46713041 CACCAG
1 CACCAG
46713047 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:46713199 original size:28 final size:28
Alignment explanation
Indices: 46713152--46713216 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
46713142 AAATTAACCC
*
46713152 TAGGGGTATAAAGGTCATTTAGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
* *
46713180 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
46713208 TAGGGGTAT
1 TAGGGGTAT
46713217 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTAGCATACA
Found at i:46718683 original size:32 final size:32
Alignment explanation
Indices: 46718636--46718705 Score: 122
Period size: 32 Copynumber: 2.2 Consensus size: 32
46718626 AAAATCCCAC
46718636 TCCCTTTACAGAGCTATCAGAACCCGTAAACTA
1 TCCC-TTACAGAGCTATCAGAACCCGTAAACTA
*
46718669 TCCCTTACGGAGCTATCAGAACCCGTAAACTA
1 TCCCTTACAGAGCTATCAGAACCCGTAAACTA
46718701 TCCCT
1 TCCCT
46718706 GAGATTGTCC
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 32 0.89
33 4 0.11
ACGTcount: A:0.30, C:0.33, G:0.13, T:0.24
Consensus pattern (32 bp):
TCCCTTACAGAGCTATCAGAACCCGTAAACTA
Found at i:46719582 original size:13 final size:13
Alignment explanation
Indices: 46719564--46719588 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
46719554 TGAGTATTCC
46719564 AATTTAAACAAAT
1 AATTTAAACAAAT
46719577 AATTTAAACAAA
1 AATTTAAACAAA
46719589 CAACAGTTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (13 bp):
AATTTAAACAAAT
Found at i:46721652 original size:47 final size:46
Alignment explanation
Indices: 46721587--46721692 Score: 158
Period size: 47 Copynumber: 2.3 Consensus size: 46
46721577 AGTAGTATTT
* *
46721587 GGCCAAAGCTAAATCGATTGAGAGAGGGAGAGAAGAAAAAGAGAATC
1 GGCCAAAGCAAAACCGATTGAGAGAGGGAGAGAAG-AAAAGAGAATC
*
46721634 GGCCAAAGCAAAACCGATTGAGAGAGGGAGAGAAGCAAAGAGAATC
1 GGCCAAAGCAAAACCGATTGAGAGAGGGAGAGAAGAAAAGAGAATC
* *
46721680 GACCAAAACAAAA
1 GGCCAAAGCAAAA
46721693 AGATGAAAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
46 21 0.39
47 33 0.61
ACGTcount: A:0.49, C:0.14, G:0.29, T:0.08
Consensus pattern (46 bp):
GGCCAAAGCAAAACCGATTGAGAGAGGGAGAGAAGAAAAGAGAATC
Found at i:46721692 original size:46 final size:47
Alignment explanation
Indices: 46721601--46721692 Score: 150
Period size: 46 Copynumber: 2.0 Consensus size: 47
46721591 AAAGCTAAAT
* *
46721601 CGATTGAGAGAGGGAGAGAAGAAAAAGAGAATCGGCCAAAGCAAAAC
1 CGATTGAGAGAGGGAGAGAAGAAAAAGAGAATCGACCAAAACAAAAC
*
46721648 CGATTGAGAGAGGGAGAGAAG-CAAAGAGAATCGACCAAAACAAAA
1 CGATTGAGAGAGGGAGAGAAGAAAAAGAGAATCGACCAAAACAAAA
46721693 AGATGAAAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
46 21 0.50
47 21 0.50
ACGTcount: A:0.50, C:0.13, G:0.30, T:0.07
Consensus pattern (47 bp):
CGATTGAGAGAGGGAGAGAAGAAAAAGAGAATCGACCAAAACAAAAC
Found at i:46725701 original size:20 final size:20
Alignment explanation
Indices: 46725676--46725714 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
46725666 GTTAAAAAAT
46725676 TTAGTAAAAAATATATAATG
1 TTAGTAAAAAATATATAATG
* *
46725696 TTAGTAAAATATATTTAAT
1 TTAGTAAAAAATATATAAT
46725715 TACTAAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.41
Consensus pattern (20 bp):
TTAGTAAAAAATATATAATG
Found at i:46725736 original size:22 final size:22
Alignment explanation
Indices: 46725711--46725755 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
46725701 AAAATATATT
46725711 TAATTACTAAAATT-AATAAAAA
1 TAATTA-TAAAATTAAATAAAAA
**
46725733 TAATTATATTATTAAATAAAAA
1 TAATTATAAAATTAAATAAAAA
46725755 T
1 T
46725756 GAATATGGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (22 bp):
TAATTATAAAATTAAATAAAAA
Found at i:46726034 original size:17 final size:17
Alignment explanation
Indices: 46726000--46726033 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
46725990 TAAAAAAATA
46726000 TAAATATAAATTAATTT
1 TAAATATAAATTAATTT
*
46726017 TAAATATATA-TAATTT
1 TAAATATAAATTAATTT
46726033 T
1 T
46726034 TTAGGCAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TAAATATAAATTAATTT
Found at i:46729392 original size:209 final size:209
Alignment explanation
Indices: 46729032--46729440 Score: 818
Period size: 209 Copynumber: 2.0 Consensus size: 209
46729022 GTACTCAATC
46729032 TCATCATCTGATTGTGGAGACAAAGTCGATGAAAGTCTGAAATGGGCTGCTAAAGGAGTACTAAC
1 TCATCATCTGATTGTGGAGACAAAGTCGATGAAAGTCTGAAATGGGCTGCTAAAGGAGTACTAAC
46729097 AAGCTTAGCACTCTGCGCAAAGAACTTTCTCAATGTACCCCTTCTGACTTAGGTACAATTTACTT
66 AAGCTTAGCACTCTGCGCAAAGAACTTTCTCAATGTACCCCTTCTGACTTAGGTACAATTTACTT
46729162 GCTTTTCTATCTCTGAGAATCTCCATACCAAGTATCTTCTTTGCTGGTCCTAAATCTTTCATCTC
131 GCTTTTCTATCTCTGAGAATCTCCATACCAAGTATCTTCTTTGCTGGTCCTAAATCTTTCATCTC
46729227 AAATTCTTCACTTA
196 AAATTCTTCACTTA
46729241 TCATCATCTGATTGTGGAGACAAAGTCGATGAAAGTCTGAAATGGGCTGCTAAAGGAGTACTAAC
1 TCATCATCTGATTGTGGAGACAAAGTCGATGAAAGTCTGAAATGGGCTGCTAAAGGAGTACTAAC
46729306 AAGCTTAGCACTCTGCGCAAAGAACTTTCTCAATGTACCCCTTCTGACTTAGGTACAATTTACTT
66 AAGCTTAGCACTCTGCGCAAAGAACTTTCTCAATGTACCCCTTCTGACTTAGGTACAATTTACTT
46729371 GCTTTTCTATCTCTGAGAATCTCCATACCAAGTATCTTCTTTGCTGGTCCTAAATCTTTCATCTC
131 GCTTTTCTATCTCTGAGAATCTCCATACCAAGTATCTTCTTTGCTGGTCCTAAATCTTTCATCTC
46729436 AAATT
196 AAATT
46729441 ATTCGCTTCG
Statistics
Matches: 200, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
209 200 1.00
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (209 bp):
TCATCATCTGATTGTGGAGACAAAGTCGATGAAAGTCTGAAATGGGCTGCTAAAGGAGTACTAAC
AAGCTTAGCACTCTGCGCAAAGAACTTTCTCAATGTACCCCTTCTGACTTAGGTACAATTTACTT
GCTTTTCTATCTCTGAGAATCTCCATACCAAGTATCTTCTTTGCTGGTCCTAAATCTTTCATCTC
AAATTCTTCACTTA
Found at i:46733826 original size:25 final size:27
Alignment explanation
Indices: 46733777--46733827 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
46733767 ACATTATTTT
46733777 AATGTAATAGAATAATAATGTATAAAAA
1 AATGTAATAGAATAAT-ATGTATAAAAA
*
46733805 AATGTGATAGAATAAT-TG-ATAAA
1 AATGTAATAGAATAATATGTATAAA
46733828 TTTATTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 5 0.23
26 2 0.09
28 15 0.68
ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29
Consensus pattern (27 bp):
AATGTAATAGAATAATATGTATAAAAA
Found at i:46737412 original size:43 final size:45
Alignment explanation
Indices: 46737359--46737471 Score: 126
Period size: 43 Copynumber: 2.6 Consensus size: 45
46737349 CCGAGATATG
* * * *
46737359 ATTATATGTAAGACCGTGTCTGGGACATTGGAATTG-T-ATTGAT
1 ATTATGTGTAAGACCATGTCTGGGACATTGGAATCGTTAATCGAT
* *
46737402 ATTATGTGTAAGATCATGTCTGGGACATTGGCATCGTTAATCGAT
1 ATTATGTGTAAGACCATGTCTGGGACATTGGAATCGTTAATCGAT
* *
46737447 -TT-TGTGTAAGACCCTGTTTGGGACA
1 ATTATGTGTAAGACCATGTCTGGGACA
46737472 GTGACATTGA
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
43 51 0.86
44 3 0.05
45 5 0.08
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.36
Consensus pattern (45 bp):
ATTATGTGTAAGACCATGTCTGGGACATTGGAATCGTTAATCGAT
Found at i:46740875 original size:16 final size:16
Alignment explanation
Indices: 46740854--46740885 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
46740844 CACCTATAAG
46740854 TATGGTGAACTAAAGA
1 TATGGTGAACTAAAGA
*
46740870 TATGGTGAGCTAAAGA
1 TATGGTGAACTAAAGA
46740886 CCTCGCGGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.06, G:0.28, T:0.25
Consensus pattern (16 bp):
TATGGTGAACTAAAGA
Found at i:46746770 original size:46 final size:46
Alignment explanation
Indices: 46746698--46746909 Score: 255
Period size: 46 Copynumber: 4.6 Consensus size: 46
46746688 GGTTTTTGAA
* **
46746698 ATGAAATGTGTAAGACCATTGTTGAAAGATATAATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * *
46746744 ATGATATGTGTAAGACAATGGTTGAAACATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** *
46746790 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATGTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * * * *
46746836 ATGAAATGAATAAGACCATGGTTGAAATATATCACGGCAACATGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
46746882 A-GAAAATGAGTAAGACCATAGTTGAAAG
1 ATG-AAATGTGTAAGACCATGGTTGAAAG
46746910 GCACTATGGC
Statistics
Matches: 143, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
45 1 0.01
46 142 0.99
ACGTcount: A:0.42, C:0.12, G:0.23, T:0.24
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:46747050 original size:13 final size:13
Alignment explanation
Indices: 46747009--46747051 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
46746999 CCAGATGGCG
46747009 AATGGTTATATGA
1 AATGGTTATATGA
* **
46747022 ATTGGTTATACAA
1 AATGGTTATATGA
*
46747035 AATGGTTGTATGA
1 AATGGTTATATGA
46747048 AATG
1 AATG
46747052 TTTACAAGAA
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.37, C:0.02, G:0.23, T:0.37
Consensus pattern (13 bp):
AATGGTTATATGA
Found at i:46748259 original size:22 final size:22
Alignment explanation
Indices: 46748231--46748290 Score: 84
Period size: 22 Copynumber: 2.7 Consensus size: 22
46748221 TCTTTGATTA
*
46748231 TTAGCACATTAGTGCTCTCCGT
1 TTAGCACATTTGTGCTCTCCGT
*
46748253 TTAGCACATTTGTGCTCTCTGT
1 TTAGCACATTTGTGCTCTCCGT
* *
46748275 ATAGCACTTTTGTGCT
1 TTAGCACATTTGTGCT
46748291 TTTTGTTTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.17, C:0.23, G:0.18, T:0.42
Consensus pattern (22 bp):
TTAGCACATTTGTGCTCTCCGT
Found at i:46751988 original size:21 final size:21
Alignment explanation
Indices: 46751963--46752034 Score: 56
Period size: 21 Copynumber: 3.2 Consensus size: 21
46751953 TTTTCTGAAA
46751963 TGAAATGTGTAAGACCATGGT
1 TGAAATGTGTAAGACCATGGT
* * *
46751984 TGAAA-GATATCATAGGAACATGAT
1 TGAAATG-TGT-A-A-GACCATGGT
*
46752008 ATGATATGTGTAAGACCATGGT
1 -TGAAATGTGTAAGACCATGGT
46752030 TGAAA
1 TGAAA
46752035 GATACCATGG
Statistics
Matches: 37, Mismatches: 8, Indels: 12
0.65 0.14 0.21
Matches are distributed among these distances:
20 1 0.03
21 11 0.30
22 8 0.22
23 2 0.05
24 8 0.22
25 6 0.16
26 1 0.03
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.28
Consensus pattern (21 bp):
TGAAATGTGTAAGACCATGGT
Found at i:46752019 original size:46 final size:46
Alignment explanation
Indices: 46751962--46753058 Score: 2027
Period size: 46 Copynumber: 23.8 Consensus size: 46
46751952 TTTTTCTGAA
* *
46751962 ATGAAATGTGTAAGACCATGGTTGAAAGATATCATAGG-AACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCAT-GGCAAGATGAT
* *
46752008 ATGATATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
46752054 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
46752100 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
46752146 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
46752192 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
46752238 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
46752284 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
46752330 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
46752376 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
46752422 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
46752468 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
46752514 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
46752560 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
46752606 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
46752652 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
46752698 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
46752744 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
*
46752790 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
* * *
46752836 GTTAAAAGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
46752882 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
46752928 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
* *
46752974 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
* * * * *
46753020 A-GAAAATGAGTAAGATCATAGTTGAAAGACACTATGGCA
1 ATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
46753059 TCATGTCAAA
Statistics
Matches: 1030, Mismatches: 19, Indels: 4
0.98 0.02 0.00
Matches are distributed among these distances:
45 3 0.00
46 1027 1.00
ACGTcount: A:0.39, C:0.11, G:0.26, T:0.24
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAGATGAT
Found at i:46755107 original size:42 final size:42
Alignment explanation
Indices: 46755048--46755133 Score: 172
Period size: 42 Copynumber: 2.0 Consensus size: 42
46755038 GATAAACCTC
46755048 CTAAAGGGCATGCTATATAGAAAAGGGTTTTCACACCCACTT
1 CTAAAGGGCATGCTATATAGAAAAGGGTTTTCACACCCACTT
46755090 CTAAAGGGCATGCTATATAGAAAAGGGTTTTCACACCCACTT
1 CTAAAGGGCATGCTATATAGAAAAGGGTTTTCACACCCACTT
46755132 CT
1 CT
46755134 TCCATCCTCT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.27
Consensus pattern (42 bp):
CTAAAGGGCATGCTATATAGAAAAGGGTTTTCACACCCACTT
Found at i:46762655 original size:16 final size:17
Alignment explanation
Indices: 46762634--46762674 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
46762624 TCTAAAGTAC
*
46762634 AATTTTATCA-TTAATT
1 AATTTTATAATTTAATT
46762650 AATTTT-TAATTTAATT
1 AATTTTATAATTTAATT
46762666 -ATTTTATAA
1 AATTTTATAA
46762675 AGACTTAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 7 0.32
16 15 0.68
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (17 bp):
AATTTTATAATTTAATT
Found at i:46766284 original size:68 final size:68
Alignment explanation
Indices: 46766175--46766313 Score: 242
Period size: 68 Copynumber: 2.0 Consensus size: 68
46766165 AACCCAAATT
* ** *
46766175 TAATATTAAAAATGATTTTAATCTATTTTTAATAAATTAATTATGTATTTTTATGTATAATAAAA
1 TAATATTAAAAATAATAATAATCTATTTTTAATAAATTAATTATGTATTTTTATATATAATAAAA
46766240 TAA
66 TAA
46766243 TAATATTAAAAATAATAATAATCTATTTTTAATAAATTAATTATGTATTTTTATATATAATAAAA
1 TAATATTAAAAATAATAATAATCTATTTTTAATAAATTAATTATGTATTTTTATATATAATAAAA
46766308 TAA
66 TAA
46766311 TAA
1 TAA
46766314 ATTTTGAGGA
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
68 67 1.00
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (68 bp):
TAATATTAAAAATAATAATAATCTATTTTTAATAAATTAATTATGTATTTTTATATATAATAAAA
TAA
Found at i:46768504 original size:37 final size:35
Alignment explanation
Indices: 46768439--46768508 Score: 81
Period size: 37 Copynumber: 1.9 Consensus size: 35
46768429 TTATATATAG
46768439 TATTATTTTCATACATTATCATATTTATTATTATACC
1 TATTATTTTCATA-ATTATCATATTTATT-TTATACC
46768476 TATTATTTTCACT-ATTATCACT-TATTATTTTAT
1 TATTATTTTCA-TAATTATCA-TAT-TTATTTTAT
46768509 TTTAATATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
36 12 0.40
37 17 0.57
38 1 0.03
ACGTcount: A:0.30, C:0.13, G:0.00, T:0.57
Consensus pattern (35 bp):
TATTATTTTCATAATTATCATATTTATTTTATACC
Found at i:46768644 original size:25 final size:24
Alignment explanation
Indices: 46768616--46768671 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
46768606 GTTATATTTT
*
46768616 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
46768641 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
46768664 CACTATTA
1 CACTATTA
46768672 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:46777336 original size:13 final size:13
Alignment explanation
Indices: 46777292--46777336 Score: 72
Period size: 13 Copynumber: 3.4 Consensus size: 13
46777282 CGCCGAGGTA
46777292 TTTTTAATTTCTG
1 TTTTTAATTTCTG
46777305 TTTTTCAATTTCTG
1 TTTTT-AATTTCTG
*
46777319 CTTTTAATTTCTG
1 TTTTTAATTTCTG
46777332 TTTTT
1 TTTTT
46777337 CAAAAATCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 17 0.59
14 12 0.41
ACGTcount: A:0.13, C:0.11, G:0.07, T:0.69
Consensus pattern (13 bp):
TTTTTAATTTCTG
Found at i:46777401 original size:100 final size:98
Alignment explanation
Indices: 46777204--46777600 Score: 390
Period size: 100 Copynumber: 4.1 Consensus size: 98
46777194 CGCTGAGGTA
*
46777204 TTTTCAATTTTCGTTTTTTCAATTTATGCTTTTT-AAAAATCAACTCATATTGCGAGAGGTGAGC
1 TTTTCAATTTTC---TTTT-AATTTATG-TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGT
* * * *
46777268 TGAGCCTCGGGGCACGCCGAGGTATTTTTAATTTCTGT
61 TGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGT
*
46777306 TTTTCAATTTCTGCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
1 TTTTCAATTT-T-CTTTTAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
*
46777371 GCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGT
64 GCCTCAGGACACGCTGAGGTATTTTCAATTTCTGT
** * * * *
46777406 TTTTCAATTTTTACCTTACAAATTCTGCTTTTC--AAATCAATTCATATTGCGAGAGGTGAGTTG
1 TTTTCAA-TTTT--CTTTTAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
*
46777469 AGCTTCAGGACACGCTGAGGTATTTTCAA-------
63 AGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGT
* ** *
46777498 TTTTC--GTTT-TTTTAATTTATGTTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
1 TTTTCAATTTTCTTTTAATTTATGTTT-TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* * *
46777560 CCTTAGGACACGCTGAGTTAATTTT-AATTTTTGT
65 CCTCAGGACACGCTGAGGT-ATTTTCAATTTCTGT
*
46777594 TTGTCAA
1 TTTTCAA
46777601 AACTCAACTT
Statistics
Matches: 250, Mismatches: 27, Indels: 40
0.79 0.09 0.13
Matches are distributed among these distances:
86 10 0.04
87 1 0.00
89 51 0.20
90 5 0.02
92 5 0.02
96 4 0.02
99 61 0.24
100 79 0.32
101 22 0.09
102 10 0.04
103 1 0.00
104 1 0.00
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.41
Consensus pattern (98 bp):
TTTTCAATTTTCTTTTAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
CTCAGGACACGCTGAGGTATTTTCAATTTCTGT
Found at i:46778111 original size:77 final size:76
Alignment explanation
Indices: 46777506--46778718 Score: 1572
Period size: 77 Copynumber: 16.1 Consensus size: 76
46777496 AATTTTCGTT
* * * * * *
46777506 TTTTTAATTTATGTTTCT-AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT-TAGGAC
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGCAC
* *
46777569 ACGCTGAGTTAA
66 ACGCTGAGGT-G
* * * * * *
46777581 TTTT-AATTTTTGTTTGTC--AAAACTCAACTTATATTGTGAGAGGTGAGTTGAGCCTCAAG-AC
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGCAC
** * *
46777642 ACATTGAGATA
66 ACGCTGAGGTG
* * * * * * *
46777653 TTTTCAATTTCTGTCTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTCGAACTTCAAG-AC
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGCAC
* *
46777717 ACGTTGAGGTA
66 ACGCTGAGGTG
* * * *
46777728 TTTTCAATTTCTGTTTTTTAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTC-A--AG
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGCAC
*
46777790 ACGCTGAGGTA
66 ACGCTGAGGTG
* * * *
46777801 ATTTCAATTT-T-TTTGTC--AAAAATCAACTCAAATTGCGAGAGGTGAGTTGAGCCTCAAG-AC
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGCAC
* *
46777861 ACGTTGAGGTA
66 ACGCTGAGGTG
* * *
46777872 TTTTCAATTTCTGTCTTTCAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-A
1 TTTTCAATTTCTGTTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGCA
* *
46777936 CACGTTGAGGTA
65 CACGCTGAGGTG
* * *
46777948 TTTTCAATTTCTGTCTTTCAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTC-A--A
1 TTTTCAATTTCTGTTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGCA
*
46778010 GACGCTGAGGTG
65 CACGCTGAGGTG
* *
46778022 TTTTCAATTTCTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAG-CA
46778087 CACGCTGAGGTG
65 CACGCTGAGGTG
* * *
46778099 TTTTCAACTTCTGTTTTTCAAAAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTC-AGGAC
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGCAC
*
46778163 ACGTTGAGGTAG
66 ACGCTGAGGT-G
* **
46778175 TTTT-AATTTCTATTCATC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGTCA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAG-CA
46778238 CACGCTGAGGTG
65 CACGCTGAGGTG
*
46778250 TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGTCA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAG-CA
46778315 CACGCTGAGGTG
65 CACGCTGAGGTG
*
46778327 TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGTCA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAG-CA
46778392 CACGCTGAGGTG
65 CACGCTGAGGTG
*
46778404 TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGTCA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAG-CA
46778469 CACGCTGAGGTG
65 CACGCTGAGGTG
*
46778481 TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGTCA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAG-CA
46778546 CACGCTGAGGTG
65 CACGCTGAGGTG
*
46778558 TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGTCA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAG-CA
46778623 CACGCTGAGGTG
65 CACGCTGAGGTG
* **
46778635 TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG-GGGC
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGCAC
* *
46778699 ATGCTGAGGTA
66 ACGCTGAGGTG
46778710 TTTTCAATT
1 TTTTCAATT
46778719 AATTTTTTTT
Statistics
Matches: 1042, Mismatches: 75, Indels: 42
0.90 0.06 0.04
Matches are distributed among these distances:
69 35 0.03
70 1 0.00
71 24 0.02
72 7 0.01
73 114 0.11
74 79 0.08
75 150 0.14
76 139 0.13
77 493 0.47
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (76 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGCAC
ACGCTGAGGTG
Found at i:46778854 original size:87 final size:85
Alignment explanation
Indices: 46778633--46778971 Score: 306
Period size: 88 Copynumber: 3.8 Consensus size: 85
46778623 CACGCTGAGG
**
46778633 TGTTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG-
1 TGTTTTCAATTT-TG-TTTT---AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGT
* * *
46778697 -GCATGCTGAGGTATTTTCAATTAATT
61 CACATGCCGAGGTATTTTCAA--AATC
* * **
46778723 TTTTTTCAATTTATGCTTTTCAAGAATCAACTCATATTATGAGAAATGAGTTGAGCCTCGGGTCA
1 TGTTTTCAATTT-TG-TTTT-AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGTCA
*
46778788 CATACCGAGGTATTTTCAAAATC
63 CATGCCGAGGTATTTTCAAAATC
* * *
46778811 TGTTTTACAAATTTTGTTTTAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCAC
1 TGTTTT-C-AATTTTGTTTTAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGTCAC
* * * **
46778876 GTGCTGAGCTATTTTCAATTTC
64 ATGCCGAGGTATTTTCAAAATC
* * * * *
46778898 TGTTTTTAATGTCTAGTTTTAAAGAGTCAATTCATATTGCGAGAAATGAGTTGAG-CTCAGGATC
1 TGTTTTCAAT-T-TTGTTTTAAA-AATCAACTCATATTGCGAGAAATGAGTTGAGCCTC-GGGTC
46778962 ACATGCCGAG
62 ACATGCCGAG
46778972 TAAAGAATCA
Statistics
Matches: 207, Mismatches: 34, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
85 3 0.01
86 1 0.00
87 72 0.35
88 88 0.43
89 3 0.01
90 40 0.19
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.37
Consensus pattern (85 bp):
TGTTTTCAATTTTGTTTTAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGTCACAT
GCCGAGGTATTTTCAAAATC
Found at i:46778861 original size:175 final size:174
Alignment explanation
Indices: 46778656--46778971 Score: 417
Period size: 175 Copynumber: 1.8 Consensus size: 174
46778646 TGTTTTTCAA
* * *
46778656 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCA-TGCTGAGGTATTTTCAATTA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCGCACTGCTGAGCTATTTTCAATT-
* * *
46778720 AT-TTTTTTTCAAT-T-TATGCTTTTCAAGAATCAACTCATATTATGAGAAATGAGTTGAGCCTC
65 -TCTGTTTTT-AATGTCTA-G-TTTTAAAGAATCAACTCATATTACGAGAAATGAGTTGAG-CTC
*
46778782 -GGGTCACATACCGAGGTATTTTCAAAATCTGTTTTACAAATTTTGTTTT
125 AGGATCACATACCGAGGTATTTTCAAAATCTGTTTTACAAATTTTGTTTT
* *
46778831 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCGCAC-TGCTGAGCTATTTTCAATT
* * *
46778896 TCTGTTTTTAATGTCTAGTTTTAAAGAGTCAATTCATATTGCGAGAAATGAGTTGAGCTCAGGAT
65 TCTGTTTTTAATGTCTAGTTTTAAAGAATCAACTCATATTACGAGAAATGAGTTGAGCTCAGGAT
*
46778961 CACATGCCGAG
130 CACATACCGAG
46778972 TAAAGAATCA
Statistics
Matches: 122, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
174 3 0.02
175 91 0.75
176 8 0.07
177 20 0.16
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (174 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCGCACTGCTGAGCTATTTTCAATTT
CTGTTTTTAATGTCTAGTTTTAAAGAATCAACTCATATTACGAGAAATGAGTTGAGCTCAGGATC
ACATACCGAGGTATTTTCAAAATCTGTTTTACAAATTTTGTTTT
Found at i:46779799 original size:20 final size:18
Alignment explanation
Indices: 46779763--46779802 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
46779753 TCATTTCTAA
*
46779763 TATATATTATATGTATTT
1 TATATATTATATATATTT
46779781 TATATATTATGTATATATTT
1 TATATATTA--TATATATTT
46779801 TA
1 TA
46779803 ATGTTATTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 9 0.47
20 10 0.53
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (18 bp):
TATATATTATATATATTT
Found at i:46783040 original size:24 final size:24
Alignment explanation
Indices: 46783008--46783058 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
46782998 TCGAATGATT
*
46783008 GTATGTTATACTGGGGCGATGCTA
1 GTATGTTATACTGGGGAGATGCTA
46783032 GTATGTTATACTGGGGAGATGCTA
1 GTATGTTATACTGGGGAGATGCTA
46783056 GTA
1 GTA
46783059 AAAATGTCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.24, C:0.10, G:0.33, T:0.33
Consensus pattern (24 bp):
GTATGTTATACTGGGGAGATGCTA
Found at i:46786981 original size:92 final size:92
Alignment explanation
Indices: 46786882--46787100 Score: 438
Period size: 92 Copynumber: 2.4 Consensus size: 92
46786872 ATGAATTAAA
46786882 ATATAATGAATCATTAATAAAATTTCACATTAATCCTTTTAAGTTTCACCTCGAAAAGTGTTGTC
1 ATATAATGAATCATTAATAAAATTTCACATTAATCCTTTTAAGTTTCACCTCGAAAAGTGTTGTC
46786947 TTCTTTTATGTATAACCTGATGGTAAT
66 TTCTTTTATGTATAACCTGATGGTAAT
46786974 ATATAATGAATCATTAATAAAATTTCACATTAATCCTTTTAAGTTTCACCTCGAAAAGTGTTGTC
1 ATATAATGAATCATTAATAAAATTTCACATTAATCCTTTTAAGTTTCACCTCGAAAAGTGTTGTC
46787039 TTCTTTTATGTATAACCTGATGGTAAT
66 TTCTTTTATGTATAACCTGATGGTAAT
46787066 ATATAATGAATCATTAATAAAATTTCACATTAATC
1 ATATAATGAATCATTAATAAAATTTCACATTAATC
46787101 ATTAATAGTG
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
92 127 1.00
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.41
Consensus pattern (92 bp):
ATATAATGAATCATTAATAAAATTTCACATTAATCCTTTTAAGTTTCACCTCGAAAAGTGTTGTC
TTCTTTTATGTATAACCTGATGGTAAT
Found at i:46788950 original size:48 final size:48
Alignment explanation
Indices: 46788897--46788992 Score: 156
Period size: 48 Copynumber: 2.0 Consensus size: 48
46788887 AAATAACAAA
* *
46788897 CCTCCAAAATTTATGTAAGATAAGTATATTGAACCGGGACTACGTCTT
1 CCTCCAAAATTTATGTAAGATAAGTATACTGAACCGGGACTAAGTCTT
* *
46788945 CCTCCAAAATTTATGTGAGATAAGTATACTGAACTGGGACTAAGTCTT
1 CCTCCAAAATTTATGTAAGATAAGTATACTGAACCGGGACTAAGTCTT
46788993 GTTTTTTTTC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (48 bp):
CCTCCAAAATTTATGTAAGATAAGTATACTGAACCGGGACTAAGTCTT
Found at i:46791945 original size:34 final size:35
Alignment explanation
Indices: 46791899--46791989 Score: 103
Period size: 34 Copynumber: 2.6 Consensus size: 35
46791889 CTGTTTGGTG
46791899 TGTTTCGATTGGACTAGCTTTTATAAGCACT-ACA
1 TGTTTCGATTGGACTAGCTTTTATAAGCACTGACA
* * * * * *
46791933 TGTTTCGCTTGGACTAGCTCTTATGAGCATTGGCG
1 TGTTTCGATTGGACTAGCTTTTATAAGCACTGACA
* *
46791968 TGTTTTGGTTGGACTAGCTTTT
1 TGTTTCGATTGGACTAGCTTTT
46791990 GTGAGCATTT
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
34 27 0.57
35 20 0.43
ACGTcount: A:0.18, C:0.16, G:0.24, T:0.42
Consensus pattern (35 bp):
TGTTTCGATTGGACTAGCTTTTATAAGCACTGACA
Found at i:46791980 original size:35 final size:36
Alignment explanation
Indices: 46791941--46792054 Score: 140
Period size: 36 Copynumber: 3.2 Consensus size: 36
46791931 CATGTTTCGC
46791941 TTGGACTAGCTCTTATGAGCA-TTGGCGTGTTTTGG
1 TTGGACTAGCTCTTATGAGCATTTGGCGTGTTTTGG
* * *
46791976 TTGGACTAGCTTTTGTGAGCATTTGGTGTGTTTTGG
1 TTGGACTAGCTCTTATGAGCATTTGGCGTGTTTTGG
** * * * *
46792012 AGGGATTGGCTCATATGAGCATTTGGCGTGTTATGG
1 TTGGACTAGCTCTTATGAGCATTTGGCGTGTTTTGG
46792048 TTGGACT
1 TTGGACT
46792055 GACAATGTAC
Statistics
Matches: 63, Mismatches: 15, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
35 19 0.30
36 44 0.70
ACGTcount: A:0.15, C:0.11, G:0.33, T:0.40
Consensus pattern (36 bp):
TTGGACTAGCTCTTATGAGCATTTGGCGTGTTTTGG
Found at i:46794403 original size:75 final size:75
Alignment explanation
Indices: 46794318--46794471 Score: 227
Period size: 75 Copynumber: 2.1 Consensus size: 75
46794308 GCAGTTGTCC
* * * *
46794318 TATAATTTTTTGATGTCATGGGAAACATGTTGACAAAATGTTTGCAACATGTTGACTGCTTCTAT
1 TATAATTTTTTGATGTCATGGGAAACAAGCTGACAAAATGTTCGCAACATGTTGACTACTTCTAT
46794383 TAGGATTTTA
66 TAGGATTTTA
** * *
46794393 TATAATTTTTTGATGTCATGTTAAACAAGCTGACAACATGTTCGCAACTTGTTGACTACTTCTAT
1 TATAATTTTTTGATGTCATGGGAAACAAGCTGACAAAATGTTCGCAACATGTTGACTACTTCTAT
*
46794458 TAGGATTTTG
66 TAGGATTTTA
46794468 TATA
1 TATA
46794472 TAAATTACTA
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
75 70 1.00
ACGTcount: A:0.29, C:0.12, G:0.17, T:0.42
Consensus pattern (75 bp):
TATAATTTTTTGATGTCATGGGAAACAAGCTGACAAAATGTTCGCAACATGTTGACTACTTCTAT
TAGGATTTTA
Found at i:46794885 original size:38 final size:38
Alignment explanation
Indices: 46794710--46795184 Score: 406
Period size: 38 Copynumber: 13.0 Consensus size: 38
46794700 TACCTTTTCC
* *
46794710 TTTTT-AAGGTTGCCTTAGAC--GGATTTATCCTAA-CT
1 TTTTTAAAGGTTGCCTTAGACAAGG-TCTATCCCAACCT
* * * *
46794745 TTTTTTAA-GTTGCCTTGGAAAAGGTCTATCACAACC-
1 TTTTTAAAGGTTGCCTTAGACAAGGTCTATCCCAACCT
* * * * *
46794781 TTTTTACAA--CTG-TTTAAAC-ATGTCTATCCCAA-CA
1 TTTTTA-AAGGTTGCCTTAGACAAGGTCTATCCCAACCT
* * *
46794815 TTTTT-AAGGTTGTCTTAGAC-GGGTCAATCCCAACCT
1 TTTTTAAAGGTTGCCTTAGACAAGGTCTATCCCAACCT
* *
46794851 TTTTTAAAAGTTACCTTAGACAAGGTCTATCCCAACC-
1 TTTTTAAAGGTTGCCTTAGACAAGGTCTATCCCAACCT
* * * *
46794888 TTTCT-AAGGTTACCTTAGACGA-GTCTATCCTAACC-
1 TTTTTAAAGGTTGCCTTAGACAAGGTCTATCCCAACCT
* *
46794923 TTTTT-AAGGTTGCTTTAGACAA-GTCTATCTCAA-CT
1 TTTTTAAAGGTTGCCTTAGACAAGGTCTATCCCAACCT
**
46794958 TTTTTAAAAGGTTGCCTTAGA-TTGGTCTATCCCAACCT
1 TTTTT-AAAGGTTGCCTTAGACAAGGTCTATCCCAACCT
* *
46794996 TTTTTAAAGGTTGCCTTAGACAAGGTCTAACCGAA-CT
1 TTTTTAAAGGTTGCCTTAGACAAGGTCTATCCCAACCT
* *
46795033 TTTTTAAAAGGTTGCTTTAGAC-TGGTCTATCCCAACCT
1 TTTTT-AAAGGTTGCCTTAGACAAGGTCTATCCCAACCT
* *
46795071 GTTTTAAAGGTCGCCTTAGACAAGGTCTATCCCAA-CT
1 TTTTTAAAGGTTGCCTTAGACAAGGTCTATCCCAACCT
* *
46795108 TCTTTTAAAGGTTGTCTTAGACAAGGTCTATCCTAACCT
1 T-TTTTAAAGGTTGCCTTAGACAAGGTCTATCCCAACCT
* *
46795147 TTTTTCAAAGGTTAGCCTT-GACTAGGTCTTTCCCAACC
1 TTTTT-AAAGGTT-GCCTTAGACAAGGTCTATCCCAACC
46795185 CTTCAATAAG
Statistics
Matches: 356, Mismatches: 59, Indels: 46
0.77 0.13 0.10
Matches are distributed among these distances:
32 2 0.01
33 1 0.00
34 19 0.05
35 77 0.22
36 37 0.10
37 92 0.26
38 98 0.28
39 26 0.07
40 4 0.01
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (38 bp):
TTTTTAAAGGTTGCCTTAGACAAGGTCTATCCCAACCT
Found at i:46795047 original size:75 final size:74
Alignment explanation
Indices: 46794802--46795183 Score: 445
Period size: 75 Copynumber: 5.2 Consensus size: 74
46794792 GTTTAAACAT
* * * * * *
46794802 GTCTATCCCAACATTTTT-AAGGTTGTCTTAGACGGGTCAATCCCAACCTTTTTTAAAAGTTACC
1 GTCTATCCCAACTTTTTTAAAGGTTGCCTTAGACTGGTCTATCCCAACCTTTTTTAAAGGTTGCC
46794866 TTAGACAAG
66 TTAGACAAG
* * * *
46794875 GTCTATCCCAACCTTTCT-AAGGTTACCTTAGAC-GAGTCTATCCTAACC-TTTTT-AAGGTTGC
1 GTCTATCCCAACTTTTTTAAAGGTTGCCTTAGACTG-GTCTATCCCAACCTTTTTTAAAGGTTGC
*
46794936 TTTAGACAA-
65 CTTAGACAAG
* *
46794945 GTCTATCTCAACTTTTTTAAAAGGTTGCCTTAGATTGGTCTATCCCAACCTTTTTTAAAGGTTGC
1 GTCTATCCCAACTTTTTT-AAAGGTTGCCTTAGACTGGTCTATCCCAACCTTTTTTAAAGGTTGC
46795010 CTTAGACAAG
65 CTTAGACAAG
* * * * *
46795020 GTCTAACCGAACTTTTTTAAAAGGTTGCTTTAGACTGGTCTATCCCAACCTGTTTTAAAGGTCGC
1 GTCTATCCCAACTTTTTT-AAAGGTTGCCTTAGACTGGTCTATCCCAACCTTTTTTAAAGGTTGC
46795085 CTTAGACAAG
65 CTTAGACAAG
* * *
46795095 GTCTATCCCAACTTCTTTTAAAGGTTGTCTTAGACAAGGTCTATCCTAACCTTTTTTCAAAGGTT
1 GTCTATCCCAACTT-TTTTAAAGGTTGCCTTAGAC-TGGTCTATCCCAACCTTTTTT-AAAGGTT
*
46795160 AGCCTT-GACTAG
63 -GCCTTAGACAAG
*
46795172 GTCTTTCCCAAC
1 GTCTATCCCAAC
46795184 CCTTCAATAA
Statistics
Matches: 265, Mismatches: 33, Indels: 18
0.84 0.10 0.06
Matches are distributed among these distances:
70 15 0.06
71 14 0.05
72 31 0.12
73 46 0.17
74 16 0.06
75 94 0.35
76 22 0.08
77 22 0.08
78 5 0.02
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.36
Consensus pattern (74 bp):
GTCTATCCCAACTTTTTTAAAGGTTGCCTTAGACTGGTCTATCCCAACCTTTTTTAAAGGTTGCC
TTAGACAAG
Found at i:46795389 original size:15 final size:15
Alignment explanation
Indices: 46795371--46795416 Score: 51
Period size: 15 Copynumber: 3.0 Consensus size: 15
46795361 ATTTTATTGT
46795371 AATATAATTTATATA
1 AATATAATTTATATA
46795386 AATA-AATTTTATTATA
1 AATATAA-TTTA-TATA
46795402 AA-ATAATTTAATATA
1 AATATAATTT-ATATA
46795417 TTTTAGTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
14 2 0.07
15 16 0.59
16 9 0.33
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
AATATAATTTATATA
Found at i:46795403 original size:16 final size:17
Alignment explanation
Indices: 46795361--46795410 Score: 56
Period size: 15 Copynumber: 3.2 Consensus size: 17
46795351 TGATAGACTT
*
46795361 ATTTTATTGT-AATATA
1 ATTTTATTATAAATATA
46795377 A-TTTA-TATAAATA-A
1 ATTTTATTATAAATATA
46795391 ATTTTATTATAAA-ATA
1 ATTTTATTATAAATATA
46795407 ATTT
1 ATTT
46795411 AATATATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
14 4 0.14
15 13 0.45
16 12 0.41
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (17 bp):
ATTTTATTATAAATATA
Found at i:46796901 original size:12 final size:12
Alignment explanation
Indices: 46796880--46796912 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
46796870 CTCTTCTAGT
46796880 TCATCATCATCC
1 TCATCATCATCC
*
46796892 TCATCCTCATCC
1 TCATCATCATCC
46796904 TCATCATCA
1 TCATCATCA
46796913 ACCCCACGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.24, C:0.42, G:0.00, T:0.33
Consensus pattern (12 bp):
TCATCATCATCC
Found at i:46804836 original size:16 final size:17
Alignment explanation
Indices: 46804815--46804847 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
46804805 AAAATAACCT
*
46804815 ATAATTTGAA-TTAAAA
1 ATAATTTAAACTTAAAA
46804831 ATAATTTAAACTTAAAA
1 ATAATTTAAACTTAAAA
46804848 TAGCTAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.36
Consensus pattern (17 bp):
ATAATTTAAACTTAAAA
Found at i:46810022 original size:16 final size:16
Alignment explanation
Indices: 46809977--46810023 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
46809967 CAAAGATGAA
*
46809977 ATTAATTTAGTTTA-T
1 ATTATTTTAGTTTATT
* *
46809992 ATTTATTTGAATTTATT
1 A-TTATTTTAGTTTATT
46810009 ATTATTTTAGTTTAT
1 ATTATTTTAGTTTAT
46810024 ATTTGAAGAT
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
15 1 0.04
16 22 0.88
17 2 0.08
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (16 bp):
ATTATTTTAGTTTATT
Found at i:46810040 original size:20 final size:20
Alignment explanation
Indices: 46810012--46810051 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
46810002 ATTTATTATT
*
46810012 ATTTTAGTTTATATTTGAAG
1 ATTTCAGTTTATATTTGAAG
46810032 ATTTCAGTTTATATTTGAAG
1 ATTTCAGTTTATATTTGAAG
46810052 TTCTAAGTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.30, C:0.03, G:0.15, T:0.53
Consensus pattern (20 bp):
ATTTCAGTTTATATTTGAAG
Found at i:46810433 original size:21 final size:21
Alignment explanation
Indices: 46810403--46810444 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
46810393 AGAAGTTGGG
*
46810403 ATTGATACATTCTTAACAAAT
1 ATTGACACATTCTTAACAAAT
46810424 ATTGACACATTCTTAACAAAT
1 ATTGACACATTCTTAACAAAT
46810445 CTAACTTCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.43, C:0.17, G:0.05, T:0.36
Consensus pattern (21 bp):
ATTGACACATTCTTAACAAAT
Found at i:46810520 original size:16 final size:16
Alignment explanation
Indices: 46810507--46810545 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
46810497 ACACAAAAGA
46810507 AAAAAAAAACAAAAAC
1 AAAAAAAAACAAAAAC
* *
46810523 AAAAAACAACAACAAC
1 AAAAAAAAACAAAAAC
46810539 AATAAAA
1 AA-AAAA
46810546 GGAATCAACT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 16 0.80
17 4 0.20
ACGTcount: A:0.82, C:0.15, G:0.00, T:0.03
Consensus pattern (16 bp):
AAAAAAAAACAAAAAC
Found at i:46813126 original size:6 final size:6
Alignment explanation
Indices: 46813115--46813162 Score: 78
Period size: 6 Copynumber: 7.8 Consensus size: 6
46813105 GGTTTTGTCC
*
46813115 AAATGG AAATGG AAATGG AAATGG AAATGG AAATGA AAATGAG AAATG
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAATG-G AAATG
46813163 ATTTATTTGC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
6 34 0.87
7 5 0.13
ACGTcount: A:0.54, C:0.00, G:0.29, T:0.17
Consensus pattern (6 bp):
AAATGG
Found at i:46815103 original size:25 final size:25
Alignment explanation
Indices: 46815069--46815122 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
46815059 AAAGTCACAC
*
46815069 GGCCGTGTCACATGCCCGTGTGCTA
1 GGCCGTGTCACACGCCCGTGTGCTA
* *
46815094 GGCCGTGTCACACGCTCGTGTGTTA
1 GGCCGTGTCACACGCCCGTGTGCTA
46815119 GGCC
1 GGCC
46815123 CTGTAACTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.11, C:0.31, G:0.33, T:0.24
Consensus pattern (25 bp):
GGCCGTGTCACACGCCCGTGTGCTA
Found at i:46817079 original size:14 final size:14
Alignment explanation
Indices: 46817060--46817115 Score: 55
Period size: 14 Copynumber: 4.2 Consensus size: 14
46817050 TATTCGGTCT
46817060 TATGAATATGTGTA
1 TATGAATATGTGTA
* *
46817074 TATGAATCTCT-TA
1 TATGAATATGTGTA
46817087 T-T-AATATGTGTA
1 TATGAATATGTGTA
* *
46817099 TATGAATCTATGTA
1 TATGAATATGTGTA
46817113 TAT
1 TAT
46817116 TAGATCATAC
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
11 5 0.15
12 4 0.12
13 4 0.12
14 20 0.61
ACGTcount: A:0.34, C:0.05, G:0.14, T:0.46
Consensus pattern (14 bp):
TATGAATATGTGTA
Found at i:46817092 original size:25 final size:25
Alignment explanation
Indices: 46817057--46817107 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
46817047 ATATATTCGG
46817057 TCTTATGAATATGTGTATATGAATC
1 TCTTATGAATATGTGTATATGAATC
*
46817082 TCTTATTAATATGTGTATATGAATC
1 TCTTATGAATATGTGTATATGAATC
46817107 T
1 T
46817108 ATGTATATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.31, C:0.08, G:0.14, T:0.47
Consensus pattern (25 bp):
TCTTATGAATATGTGTATATGAATC
Found at i:46821171 original size:113 final size:113
Alignment explanation
Indices: 46820973--46821228 Score: 512
Period size: 113 Copynumber: 2.3 Consensus size: 113
46820963 CAATGTTATT
46820973 ACATGTAGTTATAAGGTAATTAGTATATATTTAGACATAATTGATGGACAAGATTGCTCGAAATA
1 ACATGTAGTTATAAGGTAATTAGTATATATTTAGACATAATTGATGGACAAGATTGCTCGAAATA
46821038 GTTTTTGGATATGATATCAATGTTTTGAGTTCATAAGGTTAAATAATA
66 GTTTTTGGATATGATATCAATGTTTTGAGTTCATAAGGTTAAATAATA
46821086 ACATGTAGTTATAAGGTAATTAGTATATATTTAGACATAATTGATGGACAAGATTGCTCGAAATA
1 ACATGTAGTTATAAGGTAATTAGTATATATTTAGACATAATTGATGGACAAGATTGCTCGAAATA
46821151 GTTTTTGGATATGATATCAATGTTTTGAGTTCATAAGGTTAAATAATA
66 GTTTTTGGATATGATATCAATGTTTTGAGTTCATAAGGTTAAATAATA
46821199 ACATGTAGTTATAAGGTAATTAGTATATAT
1 ACATGTAGTTATAAGGTAATTAGTATATAT
46821229 GTGTGGTCCA
Statistics
Matches: 143, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
113 143 1.00
ACGTcount: A:0.38, C:0.06, G:0.18, T:0.38
Consensus pattern (113 bp):
ACATGTAGTTATAAGGTAATTAGTATATATTTAGACATAATTGATGGACAAGATTGCTCGAAATA
GTTTTTGGATATGATATCAATGTTTTGAGTTCATAAGGTTAAATAATA
Found at i:46829505 original size:43 final size:42
Alignment explanation
Indices: 46829470--46829574 Score: 131
Period size: 42 Copynumber: 2.4 Consensus size: 42
46829460 TCTTACATAT
* *
46829470 AATCAAATATCGATGCCACTGTCCCAGACAGGGTCTTACACGA
1 AATCAAATA-CGATGCCAATGTCCCAAACAGGGTCTTACACGA
* *
46829513 AATCAAATACGATGCCAATGTCCCAAACATGGTCTTAAACGTA
1 AATCAAATACGATGCCAATGTCCCAAACAGGGTCTTACACG-A
46829556 AATCTCAAAT-CGATGCCAA
1 AA--TCAAATACGATGCCAA
46829575 CTTCCCAGAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
42 28 0.51
43 12 0.22
44 9 0.16
45 6 0.11
ACGTcount: A:0.37, C:0.26, G:0.15, T:0.22
Consensus pattern (42 bp):
AATCAAATACGATGCCAATGTCCCAAACAGGGTCTTACACGA
Found at i:46829547 original size:42 final size:42
Alignment explanation
Indices: 46829439--46829603 Score: 156
Period size: 43 Copynumber: 3.9 Consensus size: 42
46829429 AGCTTGTACA
* * * *
46829439 ATGCCAACGTCTCAGACGTGGTCTTACA-TATAATCAAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGA-AATCAAATA-CG
* *
46829482 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATCAAATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATACG
* *
46829524 ATGCCAATGTCCCAAACATGGTCTTAAACGTAAATCTCAAAT-CG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AAA--TCAAATACG
* * *
46829568 ATGCCAACT-TCCCAGACGTAGTCTTACACAAAATCA
1 ATGCCAA-TGTCCCAGACATGGTCTTACACGAAATCA
46829604 CATATCGAAA
Statistics
Matches: 102, Mismatches: 15, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
41 3 0.03
42 28 0.27
43 38 0.37
44 26 0.25
45 7 0.07
ACGTcount: A:0.35, C:0.27, G:0.15, T:0.24
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATACG
Found at i:46834315 original size:3 final size:3
Alignment explanation
Indices: 46834307--46834337 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
46834297 AAACATATGA
46834307 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
46834338 TCCAAAATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:46836292 original size:60 final size:60
Alignment explanation
Indices: 46836204--46836340 Score: 161
Period size: 60 Copynumber: 2.3 Consensus size: 60
46836194 TAGAGTTAAT
* * *
46836204 TGGGCCTTAACCCATATCAATATTAATCTGGGCCATAGCCC-CTTACAATATC-AGAGTATAC
1 TGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAA-ATCGAGA-TATAC
* * * *
46836265 TGGGCCTAGCCCATATCAGTATCAATCTGGGCCTTAGCCCTATTACAAGTCGAGATATAT
1 TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAATCGAGATATAC
*
46836325 TGGGCCTTGCCCATAT
1 TGGGCCTAGCCCATAT
46836341 TAACATAGTT
Statistics
Matches: 66, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
60 51 0.77
61 15 0.23
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.28
Consensus pattern (60 bp):
TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAATCGAGATATAC
Found at i:46838433 original size:51 final size:51
Alignment explanation
Indices: 46838286--46838422 Score: 175
Period size: 51 Copynumber: 2.7 Consensus size: 51
46838276 CTACCATCAA
* * *
46838286 ATCTCTAAGAATATAATATCATATCTTCTAAGATTCCATATCTTAGATAAG
1 ATCTCTAAGATTATAATATCATATCTTCTAAGATTCCATATCATATATAAG
* * ** * * * *
46838337 ATATGTAATCTTATAAAATAATATCTTATAAGATTCCATATCATATCTAAG
1 ATCTCTAAGATTATAATATCATATCTTCTAAGATTCCATATCATATATAAG
46838388 ATCTCTAAGATTATAATATCATATCTTCTAAGATT
1 ATCTCTAAGATTATAATATCATATCTTCTAAGATT
46838423 AGTTACCATA
Statistics
Matches: 68, Mismatches: 18, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
51 68 1.00
ACGTcount: A:0.40, C:0.14, G:0.07, T:0.39
Consensus pattern (51 bp):
ATCTCTAAGATTATAATATCATATCTTCTAAGATTCCATATCATATATAAG
Found at i:46841168 original size:51 final size:51
Alignment explanation
Indices: 46841021--46841157 Score: 175
Period size: 51 Copynumber: 2.7 Consensus size: 51
46841011 CTACCATCAA
* * *
46841021 ATCTCTAAGAATATAATATCATATCTTCTAAGATTCCATATCTTAGATAAG
1 ATCTCTAAGATTATAATATCATATCTTCTAAGATTCCATATCATATATAAG
* * ** * * * *
46841072 ATATGTAATCTTATAAAATAATATCTTATAAGATTCCATATCATATCTAAG
1 ATCTCTAAGATTATAATATCATATCTTCTAAGATTCCATATCATATATAAG
46841123 ATCTCTAAGATTATAATATCATATCTTCTAAGATT
1 ATCTCTAAGATTATAATATCATATCTTCTAAGATT
46841158 AGTTACCATA
Statistics
Matches: 68, Mismatches: 18, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
51 68 1.00
ACGTcount: A:0.40, C:0.14, G:0.07, T:0.39
Consensus pattern (51 bp):
ATCTCTAAGATTATAATATCATATCTTCTAAGATTCCATATCATATATAAG
Found at i:46843474 original size:36 final size:33
Alignment explanation
Indices: 46843394--46843474 Score: 85
Period size: 36 Copynumber: 2.3 Consensus size: 33
46843384 TATTTAATAC
46843394 AATA-AAATATTTATTATATTTATTATTTTTTA
1 AATATAAATATTTATTATATTTATTATTTTTTA
46843426 ATATAATAAAATATTTATTATATTTATGATAGTGTTTTT-
1 A-AT-AT-AAATATTTATTATATTTAT--TA-T-TTTTTA
46843465 AATATAAATA
1 AATATAAATA
46843475 CTTTTTAATG
Statistics
Matches: 41, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
32 1 0.02
33 2 0.05
34 1 0.02
36 24 0.59
37 2 0.05
38 4 0.10
39 2 0.05
40 5 0.12
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (33 bp):
AATATAAATATTTATTATATTTATTATTTTTTA
Found at i:46850020 original size:22 final size:22
Alignment explanation
Indices: 46849981--46850030 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
46849971 AAATGGTATT
46849981 TGAGTATGAATGTATAAATGTA
1 TGAGTATGAATGTATAAATGTA
*
46850003 TGAGTTATGTATGT-TAAATG-A
1 TGAG-TATGAATGTATAAATGTA
*
46850024 TGTGTAT
1 TGAGTAT
46850031 TGATTGGTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
20 3 0.12
21 4 0.16
22 10 0.40
23 8 0.32
ACGTcount: A:0.34, C:0.00, G:0.24, T:0.42
Consensus pattern (22 bp):
TGAGTATGAATGTATAAATGTA
Found at i:46859548 original size:17 final size:18
Alignment explanation
Indices: 46859495--46859601 Score: 155
Period size: 17 Copynumber: 5.9 Consensus size: 18
46859485 AATCATATCT
*
46859495 TCTAAGATTGTATATCATA
1 TCTAAGATTG-CTATCATA
*
46859514 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
46859532 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
46859549 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
46859567 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
46859584 TCTAAGATTGCATATCAT
1 TCTAAGATTGC-TATCAT
46859602 TGAAGATTAT
Statistics
Matches: 80, Mismatches: 5, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
17 32 0.40
18 32 0.40
19 16 0.20
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.38
Consensus pattern (18 bp):
TCTAAGATTGCTATCATA
Found at i:46859553 original size:35 final size:35
Alignment explanation
Indices: 46859495--46859601 Score: 187
Period size: 35 Copynumber: 3.0 Consensus size: 35
46859485 AATCATATCT
46859495 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
46859532 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
46859567 TCTAAGATTGTATCATATCTAAGATTGCATATCAT
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCAT
46859602 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
35 54 0.78
36 5 0.07
37 10 0.14
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.38
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:46863450 original size:19 final size:18
Alignment explanation
Indices: 46863415--46863466 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
46863405 ATCAAGAAGT
* *
46863415 TATTAACTTCCAGAATGA
1 TATTAATTTCCAAAATGA
*
46863433 TATTAAATTTCCAAAATGT
1 TATT-AATTTCCAAAATGA
46863452 TATTAATTTCCAAAA
1 TATTAATTTCCAAAA
46863467 CATCACTTGT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
18 15 0.50
19 15 0.50
ACGTcount: A:0.42, C:0.13, G:0.06, T:0.38
Consensus pattern (18 bp):
TATTAATTTCCAAAATGA
Found at i:46865804 original size:41 final size:42
Alignment explanation
Indices: 46865746--46865866 Score: 147
Period size: 41 Copynumber: 2.9 Consensus size: 42
46865736 GTGCCATCAT
*
46865746 ATATCGATGCCACTGTCCTAGACAGGGTCTTACACGAACCAA
1 ATATCGATGCCAATGTCCTAGACAGGGTCTTACACGAACCAA
* * * *
46865788 ATA-CGATGCCAATGTCCTAGACATGGTCTTACATGTAATCAC
1 ATATCGATGCCAATGTCCTAGACAGGGTCTTACACG-AACCAA
* *
46865830 ATATCGATGCCAACGTCCCAGAC-GTGGTCTTACACGA
1 ATATCGATGCCAATGTCCTAGACAG-GGTCTTACACGA
46865867 GAACATATAT
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
41 29 0.43
42 11 0.16
43 27 0.40
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (42 bp):
ATATCGATGCCAATGTCCTAGACAGGGTCTTACACGAACCAA
Found at i:46865859 original size:84 final size:84
Alignment explanation
Indices: 46865709--46865866 Score: 212
Period size: 84 Copynumber: 1.9 Consensus size: 84
46865699 ATATCGTACA
* * * * *
46865709 ATGCCAACGTCCCAGACGTGGTCTTACGTGCCATCATATATCGATGCCACTGTCCTAGACAGGGT
1 ATGCCAACGTCCCAGACATGGTCTTACATGCAATCACATATCGATGCCACTGTCCCAGACAGGGT
46865774 CTTACACGAACCAAATACG
66 CTTACACGAACCAAATACG
* * *
46865793 ATGCCAATGTCCTAGACATGGTCTTACATGTAATCACATATCGATGCCAAC-GTCCCAGAC-GTG
1 ATGCCAACGTCCCAGACATGGTCTTACATGCAATCACATATCGATGCC-ACTGTCCCAGACAG-G
46865856 GTCTTACACGA
64 GTCTTACACGA
46865867 GAACATATAT
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
83 1 0.02
84 61 0.95
85 2 0.03
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (84 bp):
ATGCCAACGTCCCAGACATGGTCTTACATGCAATCACATATCGATGCCACTGTCCCAGACAGGGT
CTTACACGAACCAAATACG
Found at i:46865877 original size:43 final size:42
Alignment explanation
Indices: 46865709--46865877 Score: 164
Period size: 43 Copynumber: 4.0 Consensus size: 42
46865699 ATATCGTACA
** *
46865709 ATGCCAACGTCCCAGACGTGGTCTTACGTGCCATCATATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-AATCATATATCG
* * *
46865752 ATGCC-ACTGTCCTAGACAG-GGTCTTACACGAACCAAATA-CG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAATCATATATCG
* * * * *
46865793 ATGCCAATGTCCTAGACATGGTCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-AATCATATATCG
*
46865836 ATGCCAACGTCCCAGACGTGGTCTTACACGAGAACATATATC
1 ATGCCAACGTCCCAGACGTGGTCTTACACGA-ATCATATATC
46865878 AGAAATCCTA
Statistics
Matches: 102, Mismatches: 17, Indels: 14
0.77 0.13 0.11
Matches are distributed among these distances:
41 26 0.25
42 17 0.17
43 58 0.57
44 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAATCATATATCG
Found at i:46868506 original size:22 final size:22
Alignment explanation
Indices: 46868481--46868522 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
46868471 ACTTCTCACT
46868481 CCTTAAT-TTCCTCACCAAAATC
1 CCTTAATCTT-CTCACCAAAATC
*
46868503 CCTTAATCTTCTCCCCAAAA
1 CCTTAATCTTCTCACCAAAA
46868523 CTGTCCACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.31, C:0.38, G:0.00, T:0.31
Consensus pattern (22 bp):
CCTTAATCTTCTCACCAAAATC
Found at i:46876768 original size:19 final size:18
Alignment explanation
Indices: 46876740--46876782 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
46876730 CTTTATTATG
46876740 TTTTTGTATTTCAGCATA
1 TTTTTGTATTTCAGCATA
* *
46876758 TTTTATGTATTTTAGCTTA
1 TTTT-TGTATTTCAGCATA
46876777 TTTTTG
1 TTTTTG
46876783 AATTATAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 6 0.27
19 16 0.73
ACGTcount: A:0.19, C:0.07, G:0.12, T:0.63
Consensus pattern (18 bp):
TTTTTGTATTTCAGCATA
Found at i:46877063 original size:67 final size:67
Alignment explanation
Indices: 46876921--46877869 Score: 1676
Period size: 67 Copynumber: 14.2 Consensus size: 67
46876911 CATCATGTGT
* * * * * *
46876921 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTA---CACC
1 ACAAGAGAGCTACGAG--A-TAT-ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGGCACC
46876983 ATGTAG
62 ATGTAG
46876989 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGGCACCATGT
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGGCACCATGT
46877054 AG
66 AG
46877056 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGGCACCATGT
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGGCACCATGT
46877121 AG
66 AG
46877123 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGGCACCATGT
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGGCACCATGT
46877188 AG
66 AG
46877190 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGGCACCATGT
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGGCACCATGT
46877255 AG
66 AG
46877257 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGGCACCATGT
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGGCACCATGT
46877322 AG
66 AG
46877324 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGGCACCATGT
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGGCACCATGT
46877389 AG
66 AG
46877391 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGGCACCATGT
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGGCACCATGT
46877456 AG
66 AG
46877458 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGGCACCATGT
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGGCACCATGT
46877523 AG
66 AG
46877525 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGGCACCATGT
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGGCACCATGT
46877590 AG
66 AG
46877592 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGGCACCATGT
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGGCACCATGT
46877657 AG
66 AG
46877659 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGGCACCATGT
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGGCACCATGT
46877724 AG
66 AG
46877726 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGGCACCATGT
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGGCACCATGT
46877791 AG
66 AG
* * * * * * * *
46877793 ACAAGAGAGCTACGAGATAAACTG--GCTAGGTCACATGAGTGGTACTAAGTGAAGGCCACTATG
1 ACAAGAGAGCTACGAGATATA-TGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGGCACCATG
46877856 T-G
65 TAG
46877858 TACAAGAGAGCT
1 -ACAAGAGAGCT
46877870 TCGATTTTAA
Statistics
Matches: 862, Mismatches: 14, Indels: 12
0.97 0.02 0.01
Matches are distributed among these distances:
64 28 0.03
65 4 0.00
66 45 0.05
67 767 0.89
68 18 0.02
ACGTcount: A:0.29, C:0.18, G:0.32, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGGCACCATGT
AG
Found at i:46879798 original size:25 final size:25
Alignment explanation
Indices: 46879742--46879798 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
46879732 TTTTAGGTGT
* *
46879742 TTTCAGTATAGTCTATCTATAGTAG
1 TTTCAGTATAGTCTACCTATAGAAG
**
46879767 TCACAGTATA-TACTACCTATAGAAG
1 TTTCAGTATAGT-CTACCTATAGAAG
46879792 TTTCAGT
1 TTTCAGT
46879799 CAAAAACATA
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
24 1 0.04
25 24 0.96
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.39
Consensus pattern (25 bp):
TTTCAGTATAGTCTACCTATAGAAG
Found at i:46880188 original size:18 final size:19
Alignment explanation
Indices: 46880160--46880196 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
46880150 TCCAGAATGA
46880160 TATTAAATTTCCAAAACAT
1 TATTAAATTTCCAAAACAT
*
46880179 TATT-AATTTCTAAAACAT
1 TATTAAATTTCCAAAACAT
46880197 CACTTGTCGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.46, C:0.14, G:0.00, T:0.41
Consensus pattern (19 bp):
TATTAAATTTCCAAAACAT
Found at i:46882140 original size:22 final size:22
Alignment explanation
Indices: 46882115--46882158 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
46882105 ACTTTTCACT
46882115 CCTTAAT-TTCCTCACCAAAATC
1 CCTTAATCTT-CTCACCAAAATC
*
46882137 CCTTAATCTTCTCCCCAAAATC
1 CCTTAATCTTCTCACCAAAATC
46882159 GTCCACCTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 18 0.90
23 2 0.10
ACGTcount: A:0.30, C:0.39, G:0.00, T:0.32
Consensus pattern (22 bp):
CCTTAATCTTCTCACCAAAATC
Found at i:46898142 original size:48 final size:48
Alignment explanation
Indices: 46898061--46898155 Score: 136
Period size: 48 Copynumber: 2.0 Consensus size: 48
46898051 AATTATATGG
* *
46898061 TGGTCTATCCACGATGTGCTTTGTGCCCATTCATCGATATCTATGTGA
1 TGGTCTATCCACGATGTGCTATGTGACCATTCATCGATATCTATGTGA
* * * *
46898109 TGGTTTATCCACGATGTGCTATGTGATCGTTCATCGGTATCTATGTG
1 TGGTCTATCCACGATGTGCTATGTGACCATTCATCGATATCTATGTG
46898156 GTGGCTTGTC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.18, C:0.20, G:0.23, T:0.39
Consensus pattern (48 bp):
TGGTCTATCCACGATGTGCTATGTGACCATTCATCGATATCTATGTGA
Found at i:46898168 original size:48 final size:48
Alignment explanation
Indices: 46898066--46898168 Score: 134
Period size: 48 Copynumber: 2.1 Consensus size: 48
46898056 TATGGTGGTC
* * *
46898066 TATCCACGATGTGCTTTGTGCCCATTCATCGATATCTATGTGATGGTT
1 TATCCACGATGTGCTATGTGACCATTCATCGATATCTATGTGATGGCT
* * * *
46898114 TATCCACGATGTGCTATGTGATCGTTCATCGGTATCTATGTGGTGGCT
1 TATCCACGATGTGCTATGTGACCATTCATCGATATCTATGTGATGGCT
*
46898162 TGTCCAC
1 TATCCAC
46898169 AAACTGATGT
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.17, C:0.21, G:0.23, T:0.38
Consensus pattern (48 bp):
TATCCACGATGTGCTATGTGACCATTCATCGATATCTATGTGATGGCT
Found at i:46899117 original size:10 final size:10
Alignment explanation
Indices: 46899102--46899127 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
46899092 CTTTAAATGT
46899102 GAAACTATAG
1 GAAACTATAG
46899112 GAAACTATAG
1 GAAACTATAG
46899122 GAAACT
1 GAAACT
46899128 TTTGATTGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.50, C:0.12, G:0.19, T:0.19
Consensus pattern (10 bp):
GAAACTATAG
Found at i:46905046 original size:49 final size:48
Alignment explanation
Indices: 46904927--46905054 Score: 170
Period size: 47 Copynumber: 2.7 Consensus size: 48
46904917 GGGTATACTA
* * *
46904927 CTGATGCCATGTCGCAGACATGGTCTTACACTAGCTCATCCATCAAGT
1 CTGATGCCATGTCCCAGACATGGTCTTACACTAACTCATCCATCAAGG
* *
46904975 C-GATGCCATGTCCCAGACATGGTCTTACACTAACT-ATCGATATCGAGG
1 CTGATGCCATGTCCCAGACATGGTCTTACACTAACTCATC--CATCAAGG
*
46905023 CTGACGCCATGTCCCAGACATGGTCTTACACT
1 CTGATGCCATGTCCCAGACATGGTCTTACACT
46905055 GACAAATCTC
Statistics
Matches: 71, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
46 3 0.04
47 32 0.45
48 7 0.10
49 29 0.41
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.26
Consensus pattern (48 bp):
CTGATGCCATGTCCCAGACATGGTCTTACACTAACTCATCCATCAAGG
Found at i:46906932 original size:29 final size:29
Alignment explanation
Indices: 46906869--46906936 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
46906859 TAATCAACCG
46906869 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
46906898 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
46906927 CGCACACTTA
1 CGCACACTTA
46906937 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:46907049 original size:174 final size:174
Alignment explanation
Indices: 46906758--46907085 Score: 593
Period size: 174 Copynumber: 1.9 Consensus size: 174
46906748 AACTCAAGGT
* * *
46906758 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
*
46906823 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
46906888 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
46906932 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
*
46906997 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
46907062 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
46907086 TGTACAATTT
Statistics
Matches: 147, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 147 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Done.