Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 154 of 310
Found at i:50636763 original size:21 final size:21
Alignment explanation
Indices: 50636736--50636796 Score: 79
Period size: 21 Copynumber: 2.9 Consensus size: 21
50636726 TATAATGAGT
50636736 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTGC
* *
50636757 ATCTCATACCATATCATGTGC
1 ATATCATAGCATATCATGTGC
*
50636778 ATATTAT-GTCATATCATGT
1 ATATCATAG-CATATCATGT
50636797 ATAACAATAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (21 bp):
ATATCATAGCATATCATGTGC
Found at i:50636790 original size:10 final size:11
Alignment explanation
Indices: 50636744--50636796 Score: 56
Period size: 11 Copynumber: 5.0 Consensus size: 11
50636734 GTATATCATA
50636744 GCATATCATGT
1 GCATATCATGT
* *
50636755 GCATCTCAT-A
1 GCATATCATGT
*
50636765 CCATATCATGT
1 GCATATCATGT
*
50636776 GCATATTATGT
1 GCATATCATGT
50636787 -CATATCATGT
1 GCATATCATGT
50636797 ATAACAATAT
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
10 16 0.48
11 17 0.52
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.38
Consensus pattern (11 bp):
GCATATCATGT
Found at i:50639666 original size:27 final size:27
Alignment explanation
Indices: 50639635--50639812 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
50639625 TAAATTGTAC
50639635 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
50639662 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
50639688 ATGCACTAAGTGTACGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
50639716 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
50639744 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50639771 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
50639798 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50639813 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:50639776 original size:82 final size:81
Alignment explanation
Indices: 50639636--50639791 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
50639626 AAATTGTACA
* *
50639636 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
50639701 ACGAATTGACCATGCG
66 ACGAATTGACCATGCG
** *
50639717 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGT
* *
50639781 GTGCGAGTTGA
64 GTACGAATTGA
50639792 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
ACGAATTGACCATGCG
Found at i:50639803 original size:82 final size:81
Alignment explanation
Indices: 50639632--50639812 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
50639622 GATTAAATTG
* *
50639632 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
50639697 GTGTACGAATTGACCA
66 GTGTACGAATTGACCA
* * ** *
50639713 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* * **
50639777 AAGTGTGCGAGTTGATTA
64 AAGTGTACGAATTGACCA
* *
50639795 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
50639813 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTACGAATTGACCA
Found at i:50648082 original size:21 final size:21
Alignment explanation
Indices: 50648055--50648115 Score: 79
Period size: 21 Copynumber: 2.9 Consensus size: 21
50648045 TATAATGAGT
50648055 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTGC
* *
50648076 ATCTCATAACATATCATGTGC
1 ATATCATAGCATATCATGTGC
*
50648097 ATATTAT-GTCATATCATGT
1 ATATCATAG-CATATCATGT
50648116 ATAACAGTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.33, C:0.18, G:0.11, T:0.38
Consensus pattern (21 bp):
ATATCATAGCATATCATGTGC
Found at i:50648109 original size:10 final size:11
Alignment explanation
Indices: 50648041--50648115 Score: 57
Period size: 10 Copynumber: 7.1 Consensus size: 11
50648031 ACCCAACCCA
*
50648041 TGCATATAATG
1 TGCATATCATG
* *
50648052 AGTATATCAT-
1 TGCATATCATG
*
50648062 AGCATATCATG
1 TGCATATCATG
*
50648073 TGCATCTCAT-
1 TGCATATCATG
**
50648083 AACATATCATG
1 TGCATATCATG
*
50648094 TGCATATTATG
1 TGCATATCATG
50648105 T-CATATCATG
1 TGCATATCATG
50648115 T
1 T
50648116 ATAACAGTAT
Statistics
Matches: 49, Mismatches: 13, Indels: 5
0.73 0.19 0.07
Matches are distributed among these distances:
10 25 0.51
11 24 0.49
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.37
Consensus pattern (11 bp):
TGCATATCATG
Found at i:50651285 original size:40 final size:40
Alignment explanation
Indices: 50651207--50651427 Score: 291
Period size: 40 Copynumber: 5.5 Consensus size: 40
50651197 ACCCAAGTAT
* * * *
50651207 CTTCGGGATTTAG-CCGAATATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGC
* * * **
50651246 CTTCAGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGC
** **
50651286 CTTTTGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGC
*
50651326 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGC
* *
50651366 CTTCGGGACTTAGCCCGTATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGC
50651406 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
50651428 CATCCGAATA
Statistics
Matches: 159, Mismatches: 22, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 10 0.06
40 149 0.94
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGC
Found at i:50661047 original size:29 final size:29
Alignment explanation
Indices: 50660984--50661051 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
50660974 TAATCAACCG
50660984 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
50661013 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
50661042 CGCACACTTA
1 CGCACACTTA
50661052 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:50661221 original size:29 final size:29
Alignment explanation
Indices: 50661158--50661225 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
50661148 TAATCAACCG
*
50661158 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
50661187 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
50661216 CGCACACTTA
1 CGCACACTTA
50661226 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:50661395 original size:29 final size:29
Alignment explanation
Indices: 50661332--50661399 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
50661322 TAATCAACCG
*
50661332 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
50661361 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
50661390 CGCACACTTA
1 CGCACACTTA
50661400 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:50661540 original size:29 final size:30
Alignment explanation
Indices: 50661501--50661579 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
50661491 CTTAATAATC
50661501 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
50661531 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
50661560 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
50661580 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:50661573 original size:174 final size:174
Alignment explanation
Indices: 50660877--50661548 Score: 1290
Period size: 174 Copynumber: 3.9 Consensus size: 174
50660867 AGTCCAAGAA
* *
50660877 ACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATAGAAA
1 ACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAA
*
50660942 ATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGCACTT
66 ATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGTACTT
50661007 TAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACTT
131 TAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACTT
* *
50661051 ACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATAGAAA
1 ACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAA
50661116 ATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGTACTT
66 ATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGTACTT
50661181 TAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACTT
131 TAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACTT
50661225 ACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAA
1 ACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAA
50661290 ATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGTACTT
66 ATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGTACTT
50661355 TAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACTT
131 TAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACTT
50661399 ACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAA
1 ACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAA
50661464 ATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGTACTT
66 ATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGTACTT
*
50661529 TAAACTCGCACACTTAGTGC
131 TAAACTCACACACTTAGTGC
50661549 TGTACAATTT
Statistics
Matches: 494, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
174 494 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
ACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAA
ATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGTACTT
TAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACTT
Found at i:50663522 original size:29 final size:28
Alignment explanation
Indices: 50663486--50663563 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
50663476 TCATGAGATT
50663486 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
50663516 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
50663543 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
50663564 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:50663781 original size:174 final size:174
Alignment explanation
Indices: 50663516--50663843 Score: 611
Period size: 174 Copynumber: 1.9 Consensus size: 174
50663506 AAATTGTACA
50663516 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
50663581 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
50663646 TTTTGGACAGCAGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCAGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
50663690 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGTGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
50663755 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
*
50663820 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCAGAAAAGGTAAGT
50663844 ACCTTGAGTT
Statistics
Matches: 149, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 149 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCAGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:50665348 original size:52 final size:52
Alignment explanation
Indices: 50665282--50665384 Score: 170
Period size: 52 Copynumber: 2.0 Consensus size: 52
50665272 CAGAGCTATT
*
50665282 GTTTAGTCGGTTCTAGGACTACCATAGCGCCAATGAGTCTAGCTATACATGG
1 GTTTAGTCGGTTCTAGGACTACCATAGCACCAATGAGTCTAGCTATACATGG
* **
50665334 GTTTAGTTGGTTCTAGGACTACCATAGCACGTATGAGTCTAGCTATACATG
1 GTTTAGTCGGTTCTAGGACTACCATAGCACCAATGAGTCTAGCTATACATG
50665385 CCGAATGTTA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 47 1.00
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.31
Consensus pattern (52 bp):
GTTTAGTCGGTTCTAGGACTACCATAGCACCAATGAGTCTAGCTATACATGG
Found at i:50665782 original size:77 final size:77
Alignment explanation
Indices: 50665655--50665798 Score: 279
Period size: 77 Copynumber: 1.9 Consensus size: 77
50665645 CGAATTTGAA
*
50665655 TAATCCACCCCCGGAGCCAGTAATGCCATCAGTTACTGATCCTGTGAGGCTGAGTAAGCCACCTG
1 TAATCCACCCCCGGAGCCAGTAATGCCATCAGTTACTGATACTGTGAGGCTGAGTAAGCCACCTG
50665720 TAATCCACCCCC
66 TAATCCACCCCC
50665732 TAATCCACCCCCGGAGCCAGTAATGCCATCAGTTACTGATACTGTGAGGCTGAGTAAGCCACCTG
1 TAATCCACCCCCGGAGCCAGTAATGCCATCAGTTACTGATACTGTGAGGCTGAGTAAGCCACCTG
50665797 TA
66 TA
50665799 GACTTGATTA
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
77 66 1.00
ACGTcount: A:0.26, C:0.32, G:0.21, T:0.22
Consensus pattern (77 bp):
TAATCCACCCCCGGAGCCAGTAATGCCATCAGTTACTGATACTGTGAGGCTGAGTAAGCCACCTG
TAATCCACCCCC
Found at i:50671876 original size:29 final size:28
Alignment explanation
Indices: 50671840--50671917 Score: 95
Period size: 29 Copynumber: 2.7 Consensus size: 28
50671830 TCATGAGATT
50671840 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
* *
50671870 -GCACTAAGTGTCCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
50671897 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
50671918 GATTATTAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
27 5 0.12
29 33 0.80
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:50672135 original size:174 final size:174
Alignment explanation
Indices: 50671870--50672197 Score: 575
Period size: 174 Copynumber: 1.9 Consensus size: 174
50671860 AAATTGTACA
*
50671870 GCACTAAGTGTCCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTCCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
50671935 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
*
50672000 TTTTGGACAGCGGGAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
** *
50672044 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTCCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
50672109 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAATGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
50672174 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
50672198 ACCTTGAGTT
Statistics
Matches: 145, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
174 145 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTCCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:50675000 original size:89 final size:88
Alignment explanation
Indices: 50674904--50675071 Score: 246
Period size: 89 Copynumber: 1.9 Consensus size: 88
50674894 CTCCAAATTC
*
50674904 TTTTTTTTCCTCGAGAAATGATGTAATAGTGACATCATATAAAGTCACTATTATTAATTATTATT
1 TTTTTTTTCCTCGAGAAATGATGTAATAGTGACAACATATAAAGTCACTATTATTAATTATTATT
* *
50674969 GTGGCCATACGAATTGCCTTCAAG
66 GCGACCATAC-AATTGCCTTCAAG
* * * * * *
50674993 TTTTTTTTTCTTGAGAACTGATGTAATAGTGATAACATATCATGTCACTATTATTAATTATTATT
1 TTTTTTTTCCTCGAGAAATGATGTAATAGTGACAACATATAAAGTCACTATTATTAATTATTATT
50675058 GCGACCATACAATT
66 GCGACCATACAATT
50675072 TTTTTCACTA
Statistics
Matches: 70, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
88 4 0.06
89 66 0.94
ACGTcount: A:0.32, C:0.14, G:0.13, T:0.42
Consensus pattern (88 bp):
TTTTTTTTCCTCGAGAAATGATGTAATAGTGACAACATATAAAGTCACTATTATTAATTATTATT
GCGACCATACAATTGCCTTCAAG
Found at i:50678026 original size:24 final size:24
Alignment explanation
Indices: 50677989--50678036 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
50677979 TTTTACTATC
*
50677989 ATTTAACATTAATATAAATTTAAT
1 ATTTAACATAAATATAAATTTAAT
* * *
50678013 ATTTAATATAAATATGATTTTAAT
1 ATTTAACATAAATATAAATTTAAT
50678037 TGTTTTTATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (24 bp):
ATTTAACATAAATATAAATTTAAT
Found at i:50684170 original size:30 final size:30
Alignment explanation
Indices: 50684136--50684192 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
50684126 TCACATGGTC
*
50684136 GTGTAACATTCGAACTAGGGACACATGACT
1 GTGTAACATTCGAACTAAGGACACATGACT
*
50684166 GTGTAACCTTCGAACTAAGGACACATG
1 GTGTAACATTCGAACTAAGGACACATG
50684193 GTCGTGTCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (30 bp):
GTGTAACATTCGAACTAAGGACACATGACT
Found at i:50687067 original size:18 final size:19
Alignment explanation
Indices: 50687041--50687080 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
50687031 TCTCCATTCC
50687041 ACATCCTTA-ATGTATATA
1 ACATCCTTATATGTATATA
*
50687059 ACATGCTTATATGTATATA
1 ACATCCTTATATGTATATA
50687078 ACA
1 ACA
50687081 AGCTGTCCAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.40, C:0.15, G:0.07, T:0.38
Consensus pattern (19 bp):
ACATCCTTATATGTATATA
Found at i:50688143 original size:8 final size:8
Alignment explanation
Indices: 50688130--50688154 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
50688120 CATACTAAAC
50688130 AATAAAAT
1 AATAAAAT
50688138 AATAAAAT
1 AATAAAAT
50688146 AATAAAAT
1 AATAAAAT
50688154 A
1 A
50688155 TTATTTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:50690597 original size:51 final size:51
Alignment explanation
Indices: 50690521--50690711 Score: 246
Period size: 51 Copynumber: 3.8 Consensus size: 51
50690511 CCGGTTCACA
* * *
50690521 TAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCTGGTACACG
* * * *
50690572 TAGTAGCCTGCTCATAGTACTACACACGTGATCGA--AGCTATCTGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATCA-CTATCTGGTACACG
* *
50690623 TAGTAGCCTGCATATAGTACTACACATGTGACCTATCA-T-TCTGGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACC-ATCACTATCTGGTACACG
50690673 TAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
50690712 TTCACTTTTA
Statistics
Matches: 119, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
49 4 0.03
50 43 0.36
51 69 0.58
52 2 0.02
53 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCTGGTACACG
Found at i:50690701 original size:101 final size:102
Alignment explanation
Indices: 50690519--50690703 Score: 311
Period size: 101 Copynumber: 1.8 Consensus size: 102
50690509 TACCGGTTCA
*
50690519 CATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATACACGTAGTAGCCTGCT
1 CATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATACACGTAGTAGCCTGCA
50690584 CATAGTACTACACACGTGATCGAAGCTATCTGGTACG
66 CATAGTACTACACACGTGATCGAAGCTATCTGGTACG
* * *
50690621 CATAGTAGCCTGCATATAGTACTACACATGTGACCTATCA-T-TCTGGTACACGTAGTAGCCTGC
1 CATAGTAGCCTGCACATAGTACTACACATGTGACC-ATCACTATCCGATACACGTAGTAGCCTGC
50690684 ACATAGTACTACACACGTGA
65 ACATAGTACTACACACGTGA
50690704 CCATCACTTT
Statistics
Matches: 78, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
101 39 0.50
102 35 0.45
103 4 0.05
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (102 bp):
CATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATACACGTAGTAGCCTGCA
CATAGTACTACACACGTGATCGAAGCTATCTGGTACG
Found at i:50692889 original size:10 final size:11
Alignment explanation
Indices: 50692863--50692895 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
50692853 CTCGATACTA
50692863 TTTCTCTTCAC
1 TTTCTCTTCAC
*
50692874 TTTCTCTT-AT
1 TTTCTCTTCAC
50692884 TTTCTCTTCAC
1 TTTCTCTTCAC
50692895 T
1 T
50692896 AACATATCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.09, C:0.30, G:0.00, T:0.61
Consensus pattern (11 bp):
TTTCTCTTCAC
Found at i:50693314 original size:8 final size:8
Alignment explanation
Indices: 50693301--50693325 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
50693291 CATACTAAAC
50693301 AATAAAAT
1 AATAAAAT
50693309 AATAAAAT
1 AATAAAAT
50693317 AATAAAAT
1 AATAAAAT
50693325 A
1 A
50693326 TTATTTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:50698370 original size:18 final size:18
Alignment explanation
Indices: 50698347--50698384 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
50698337 GCATAGCTTT
*
50698347 CCAACAAAGCTTTTCAAA
1 CCAACAAAGCTTTCCAAA
*
50698365 CCAACATAGCTTTCCAAA
1 CCAACAAAGCTTTCCAAA
50698383 CC
1 CC
50698385 TTACACATAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.34, G:0.05, T:0.21
Consensus pattern (18 bp):
CCAACAAAGCTTTCCAAA
Found at i:50702749 original size:13 final size:13
Alignment explanation
Indices: 50702733--50702757 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50702723 TAAAATGTGC
50702733 AAATAAAACAAGT
1 AAATAAAACAAGT
50702746 AAATAAAACAAG
1 AAATAAAACAAG
50702758 AATGTTACGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.08, G:0.08, T:0.12
Consensus pattern (13 bp):
AAATAAAACAAGT
Found at i:50709436 original size:8 final size:8
Alignment explanation
Indices: 50709425--50709449 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
50709415 AATTTTAAAC
50709425 ATTTAACA
1 ATTTAACA
50709433 ATTTAACA
1 ATTTAACA
50709441 ATTTAACA
1 ATTTAACA
50709449 A
1 A
50709450 ATTGATCCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (8 bp):
ATTTAACA
Found at i:50710847 original size:6 final size:6
Alignment explanation
Indices: 50710836--50710867 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
50710826 TCAATCCTGG
50710836 ATGAAA ATGAAA ATGAAA ATGAAA ATGAAA AT
1 ATGAAA ATGAAA ATGAAA ATGAAA ATGAAA AT
50710868 AAAGACTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.16, T:0.19
Consensus pattern (6 bp):
ATGAAA
Found at i:50714788 original size:50 final size:50
Alignment explanation
Indices: 50714728--50715014 Score: 348
Period size: 50 Copynumber: 5.8 Consensus size: 50
50714718 TCGCATATCG
* * * * *
50714728 GTGCCGATGCCATGTCCCAAACATGGTCTTACAATAACTCTCCTCTGTCC
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCCTCGGTCC
* * *
50714778 GTGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCACTACTCGGTCT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCCTCGGTCC
* * *
50714828 GTGCCGATGCCATTTCCCAGACATGGTCTTACACTGGCACTCATC--T-C
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCCTCGGTCC
* * * * *
50714875 GAGCCGATGTCATGTCCCAAACATGGTCTTACACT-GACTCTCCTCTGTCC
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CACTCCTCGGTCC
* * *
50714925 GTGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTTCTCGGTCT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCCTCGGTCC
* *
50714975 GTGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCAC
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCAC
50715015 ACTCACTACC
Statistics
Matches: 201, Mismatches: 31, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
46 1 0.00
47 37 0.18
48 1 0.00
49 1 0.00
50 160 0.80
51 1 0.00
ACGTcount: A:0.20, C:0.32, G:0.20, T:0.28
Consensus pattern (50 bp):
GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCCTCGGTCC
Found at i:50714933 original size:97 final size:100
Alignment explanation
Indices: 50714728--50715018 Score: 335
Period size: 97 Copynumber: 3.0 Consensus size: 100
50714718 TCGCATATCG
* * * * * * *
50714728 GTGCCGATGCCATGTCCCAAACATGGTCTTACAATAACTCTCCTCTGTCCGTGCCGATGCCATGT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTTCTC-GTCTGAGCCGATGCCATGT
* *
50714793 CCTAGACATGGTCTTACACT-AGCACTACTCGGTCT
65 CCCAGACATGGTCTTACACTGAGCACTACTCGGTCC
* * *
50714828 GTGCCGATGCCATTTCCCAGACATGGTCTTACACTGGCAC-TCATC-TC-GAGCCGATGTCATGT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTTC-TCGTCTGAGCCGATGCCATGT
* * * *
50714890 CCCAAACATGGTCTTACACTGA-CTCTCCTCTGTCC
65 CCCAGACATGGTCTTACACTGAGCACTACTCGGTCC
* * *
50714925 GTGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTTCTCGGTCTGTGCCAATGCCATGT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTTCTC-GTCTGAGCCGATGCCATGT
50714990 CCCAGACATGGTCTTACACTG-GCAC-ACTC
65 CCCAGACATGGTCTTACACTGAGCACTACTC
50715019 ACTACCATGG
Statistics
Matches: 160, Mismatches: 24, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
97 79 0.49
98 5 0.03
99 6 0.04
100 70 0.44
ACGTcount: A:0.20, C:0.33, G:0.20, T:0.27
Consensus pattern (100 bp):
GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTTCTCGTCTGAGCCGATGCCATGTC
CCAGACATGGTCTTACACTGAGCACTACTCGGTCC
Found at i:50714997 original size:147 final size:148
Alignment explanation
Indices: 50714682--50715014 Score: 508
Period size: 147 Copynumber: 2.3 Consensus size: 148
50714672 CTGGTAGGAC
* * * *
50714682 GCCAATGCCATATCCTAGATATGGTCTTACA-TGGGATCGCATATCGGTGCCGATGCCATGTCCC
1 GCCAATGCCATATCCCAGACATGGTCTTACACTGGCA-CGCATATCGGAGCCGATGCCATGTCCC
*
50714746 AAACATGGTCTTACAATAACTCTCCTCTGTCCGTGCCGATGCCATGTCCTAGACATGGTCTTACA
65 AAACATGGTCTTACAATAACTCTCCTCTGTCCGTGCCGATGCCATGTCCCAGACATGGTCTTACA
50714811 CTAGCACTACTCGGTCTGT
130 CTAGCACTACTCGGTCTGT
* * * * *
50714830 GCCGATGCCATTTCCCAGACATGGTCTTACACTGGCACTCATCTC-GAGCCGATGTCATGTCCCA
1 GCCAATGCCATATCCCAGACATGGTCTTACACTGGCACGCATATCGGAGCCGATGCCATGTCCCA
* * *
50714894 AACATGGTCTTACACTGACTCTCCTCTGTCCGTGTCGATGCCATGTCCCAGACATGGTCTTACAC
66 AACATGGTCTTACAATAACTCTCCTCTGTCCGTGCCGATGCCATGTCCCAGACATGGTCTTACAC
*
50714959 TAGCACTTCTCGGTCTGT
131 TAGCACTACTCGGTCTGT
*
50714977 GCCAATGCCATGTCCCAGACATGGTCTTACACTGGCAC
1 GCCAATGCCATATCCCAGACATGGTCTTACACTGGCAC
50715015 ACTCACTACC
Statistics
Matches: 168, Mismatches: 16, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
147 131 0.78
148 33 0.20
149 4 0.02
ACGTcount: A:0.21, C:0.31, G:0.20, T:0.28
Consensus pattern (148 bp):
GCCAATGCCATATCCCAGACATGGTCTTACACTGGCACGCATATCGGAGCCGATGCCATGTCCCA
AACATGGTCTTACAATAACTCTCCTCTGTCCGTGCCGATGCCATGTCCCAGACATGGTCTTACAC
TAGCACTACTCGGTCTGT
Found at i:50717665 original size:18 final size:18
Alignment explanation
Indices: 50717637--50717678 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
50717627 CTTTTTTAAG
50717637 AGTGC-TTTTGTCCCAAA
1 AGTGCTTTTTGTCCCAAA
*
50717654 AGTGCTTTTTGTCCTAAA
1 AGTGCTTTTTGTCCCAAA
50717672 AGTGCTT
1 AGTGCTT
50717679 CTTAGAAGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.40
Consensus pattern (18 bp):
AGTGCTTTTTGTCCCAAA
Found at i:50719476 original size:21 final size:22
Alignment explanation
Indices: 50719429--50719476 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
50719419 AAGTTTCAGC
50719429 TCAAAATTATATAAAAAGTAAT
1 TCAAAATTATATAAAAAGTAAT
* * * *
50719451 CCAAAATTTTAT-ATAAGTTAT
1 TCAAAATTATATAAAAAGTAAT
50719472 TCAAA
1 TCAAA
50719477 CTCTTTTATA
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.52, C:0.08, G:0.04, T:0.35
Consensus pattern (22 bp):
TCAAAATTATATAAAAAGTAAT
Found at i:50725718 original size:3 final size:3
Alignment explanation
Indices: 50725710--50725752 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
50725700 AACGTATGTG
50725710 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
50725753 ATAAAAAGAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:50744122 original size:20 final size:21
Alignment explanation
Indices: 50744097--50744146 Score: 86
Period size: 20 Copynumber: 2.5 Consensus size: 21
50744087 TATAGAATAC
50744097 GCCACAAAGGT-TAACAGAAT
1 GCCACAAAGGTCTAACAGAAT
50744117 GCCAC-AAGGTCTAACAGAAT
1 GCCACAAAGGTCTAACAGAAT
50744137 GCCACAAAGG
1 GCCACAAAGG
50744147 CCAAACCAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.18
20 19 0.68
21 4 0.14
ACGTcount: A:0.42, C:0.24, G:0.22, T:0.12
Consensus pattern (21 bp):
GCCACAAAGGTCTAACAGAAT
Found at i:50744159 original size:22 final size:21
Alignment explanation
Indices: 50744109--50744208 Score: 69
Period size: 22 Copynumber: 4.6 Consensus size: 21
50744099 CACAAAGGTT
* *
50744109 AACAGAATGCCAC-AAGGTCT
1 AACAGAATGCCACAAAGGCCA
50744129 AACAGAATGCCACAAAGGCCA
1 AACAGAATGCCACAAAGGCCA
* * *
50744150 AACCAGAATGTCATAAACGCCA
1 AA-CAGAATGCCACAAAGGCCA
* *
50744172 AATTTAGAATGCGCCACAAAGG-CT
1 AA--CAGAAT--GCCACAAAGGCCA
*
50744196 AACAAAATGCCAC
1 AACAGAATGCCAC
50744209 CCAAGCACCT
Statistics
Matches: 62, Mismatches: 13, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
20 18 0.29
21 7 0.11
22 22 0.35
23 5 0.08
24 3 0.05
25 7 0.11
ACGTcount: A:0.44, C:0.26, G:0.17, T:0.13
Consensus pattern (21 bp):
AACAGAATGCCACAAAGGCCA
Found at i:50753706 original size:15 final size:16
Alignment explanation
Indices: 50753682--50753725 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
50753672 GCATAATGGT
*
50753682 CACATGTCACAA-AAA
1 CACATATCACAATAAA
*
50753697 CACATATCACAATATA
1 CACATATCACAATAAA
50753713 CACATATTCACAA
1 CACATA-TCACAA
50753726 GTTAAGATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 11 0.44
16 8 0.32
17 6 0.24
ACGTcount: A:0.50, C:0.27, G:0.02, T:0.20
Consensus pattern (16 bp):
CACATATCACAATAAA
Found at i:50754601 original size:190 final size:190
Alignment explanation
Indices: 50754277--50754658 Score: 629
Period size: 190 Copynumber: 2.0 Consensus size: 190
50754267 GGCTACTACT
* * *
50754277 AAATTCCCAAATAACGCATTGAAGCATGTCCACAAGTAATTATTCCATACAGCCACTAATTATGC
1 AAATTCCCAAATAACGCATTGAAGCATGTCCACAAGCAATTATTCCATACAGCCACCAATTACGC
* *
50754342 TTTTGCCTAAAAGCTGAAAGCTCAAACTAGCTTTTCCTTGCCTTTATCTCTACTCATAAAAGGTT
66 TTTTGCCTAAAAGCCGAAAGCTCAAACTAGCTTTTCCTTGCCTTTATCTCTACTCATAAAAGATT
* *
50754407 CTATCGAATCTGGAACTTCAACACAATAAATTCACACAACAATACATCCAAAAATTATCC
131 CTATCGAATCTAGAACTTCAACACAATAAATTCACACAACAATACATCCAAAAATTAGCC
* *
50754467 AAATTCCCAAATAATGCATTGAAGCATGTCCACAAGCAATTATTCCATACAGTCACCAATTACGC
1 AAATTCCCAAATAACGCATTGAAGCATGTCCACAAGCAATTATTCCATACAGCCACCAATTACGC
* * * *
50754532 TTTTGCTTAAAAGCCGAATGCTCAAACTAGCTTTTCCTTGCCTTTATCTCTACTCGTAGAAGATT
66 TTTTGCCTAAAAGCCGAAAGCTCAAACTAGCTTTTCCTTGCCTTTATCTCTACTCATAAAAGATT
* *
50754597 CTATCGAATCTAGAACTTCAACATAATAAATTCGCACAACAATACATCCAAAAATTAGCC
131 CTATCGAATCTAGAACTTCAACACAATAAATTCACACAACAATACATCCAAAAATTAGCC
50754657 AA
1 AA
50754659 GGATTCATTA
Statistics
Matches: 177, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
190 177 1.00
ACGTcount: A:0.37, C:0.25, G:0.10, T:0.29
Consensus pattern (190 bp):
AAATTCCCAAATAACGCATTGAAGCATGTCCACAAGCAATTATTCCATACAGCCACCAATTACGC
TTTTGCCTAAAAGCCGAAAGCTCAAACTAGCTTTTCCTTGCCTTTATCTCTACTCATAAAAGATT
CTATCGAATCTAGAACTTCAACACAATAAATTCACACAACAATACATCCAAAAATTAGCC
Found at i:50755084 original size:21 final size:22
Alignment explanation
Indices: 50755049--50755099 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 22
50755039 ATTTTTATTT
50755049 AAAACATGTGATTTAATGG-CTA
1 AAAACATGTGATTTAA-GGACTA
*
50755071 AAAACATG-GTTTTAAGGACTA
1 AAAACATGTGATTTAAGGACTA
50755092 AATAACAT
1 AA-AACAT
50755100 CTAAAACTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 2 0.08
21 11 0.42
22 13 0.50
ACGTcount: A:0.45, C:0.10, G:0.16, T:0.29
Consensus pattern (22 bp):
AAAACATGTGATTTAAGGACTA
Found at i:50763373 original size:150 final size:150
Alignment explanation
Indices: 50763102--50763401 Score: 591
Period size: 150 Copynumber: 2.0 Consensus size: 150
50763092 AATAGGTGAG
50763102 AAAAATGGCTTGGAAATGGCCTATTTTTCATCCACGCAGTCAGAGACACGGGTGTGTGTCCTTAT
1 AAAAATGGCTTGGAAATGGCCTATTTTTCATCCACGCAGTCAGAGACACGGGTGTGTGTCCTTAT
50763167 AGGTTTTTAAAGCTTGCAATTTGAGAGTTACACGACCTGGCACACAGGCGTGTGGCTTGGACATG
66 AGGTTTTTAAAGCTTGCAATTTGAGAGTTACACGACCTGGCACACAGGCGTGTGGCTTGGACATG
50763232 TGACACAAGTTAGAGAGCTA
131 TGACACAAGTTAGAGAGCTA
50763252 AAAAATGGCTTGGAAATGGCCTATTTTTCATCCACGCAGTCAGAGACACGGGTGTGTGTCCTTAT
1 AAAAATGGCTTGGAAATGGCCTATTTTTCATCCACGCAGTCAGAGACACGGGTGTGTGTCCTTAT
*
50763317 AGGTTTTTAAAGCTTGCAATTTGAGAGTTACACGACCTGGCACACAGGCGTGTGGCTTGGACGTG
66 AGGTTTTTAAAGCTTGCAATTTGAGAGTTACACGACCTGGCACACAGGCGTGTGGCTTGGACATG
50763382 TGACACAAGTTAGAGAGCTA
131 TGACACAAGTTAGAGAGCTA
50763402 CACGGGCATG
Statistics
Matches: 149, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 149 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (150 bp):
AAAAATGGCTTGGAAATGGCCTATTTTTCATCCACGCAGTCAGAGACACGGGTGTGTGTCCTTAT
AGGTTTTTAAAGCTTGCAATTTGAGAGTTACACGACCTGGCACACAGGCGTGTGGCTTGGACATG
TGACACAAGTTAGAGAGCTA
Found at i:50778362 original size:23 final size:23
Alignment explanation
Indices: 50778291--50778389 Score: 112
Period size: 23 Copynumber: 4.3 Consensus size: 23
50778281 TAGGAATCTA
50778291 TCGGCTACAATATAGTGGTAGCT
1 TCGGCTACAATATAGTGGTAGCT
* *
50778314 TCAGCTAC-ATCTCAGTGGTAGCT
1 TCGGCTACAATAT-AGTGGTAGCT
50778337 TCGGCTACAATACT-GTGGTAGCT
1 TCGGCTACAATA-TAGTGGTAGCT
* ** *
50778360 TCGACTACGTTATAGTGATAGCT
1 TCGGCTACAATATAGTGGTAGCT
50778383 TCGGCTA
1 TCGGCTA
50778390 TATTACAGTT
Statistics
Matches: 63, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
22 4 0.06
23 56 0.89
24 2 0.03
25 1 0.02
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.31
Consensus pattern (23 bp):
TCGGCTACAATATAGTGGTAGCT
Found at i:50783007 original size:40 final size:41
Alignment explanation
Indices: 50782941--50783198 Score: 276
Period size: 40 Copynumber: 6.3 Consensus size: 41
50782931 GACTATGTTT
*
50782941 GGCACTTAGTGTGCGTATC-GAGATAGCTTCGGCTAT-ATAA
1 GGCACTTAGTGTGCGAATCAGA-ATAGCTTCGGCTATGATAA
* *
50782981 AGCACTTAGTGTACGAATCAGAATAGCTTCGGCTATGA-AA
1 GGCACTTAGTGTGCGAATCAGAATAGCTTCGGCTATGATAA
* * * * **
50783021 GGCACTTAGTGTGCGAGATTATAATAGCTTCAGCTATGCTTT
1 GGCACTTAGTGTGCGA-ATCAGAATAGCTTCGGCTATGATAA
*
50783063 GGCACTTAGTGTGCGTATC-GAGATAGCTTCGGCTAT-ATAA
1 GGCACTTAGTGTGCGAATCAGA-ATAGCTTCGGCTATGATAA
* *
50783103 AGCACTTAGTGTACGAATCAGAATAGCTTCGGCTATGA-AA
1 GGCACTTAGTGTGCGAATCAGAATAGCTTCGGCTATGATAA
* * * * **
50783143 GGCACTTAGTGTGCGAGATTATAATAGCTTCAGCTATGCTTT
1 GGCACTTAGTGTGCGA-ATCAGAATAGCTTCGGCTATGATAA
50783185 GGCACTTAGTGTGC
1 GGCACTTAGTGTGC
50783199 AAGATATCGA
Statistics
Matches: 180, Mismatches: 29, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
40 94 0.52
41 57 0.32
42 29 0.16
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30
Consensus pattern (41 bp):
GGCACTTAGTGTGCGAATCAGAATAGCTTCGGCTATGATAA
Found at i:50783093 original size:82 final size:80
Alignment explanation
Indices: 50782942--50783179 Score: 232
Period size: 81 Copynumber: 2.9 Consensus size: 80
50782932 ACTATGTTTG
* * * * *
50782942 GCACTTAGTGTGCGTATC-GAGATAGCTTCGGCTAT-ATAAAGCACTTAGTGTACGAATCAGAAT
1 GCACTTAGTGTACGAATCAGA-ATAGCTTCAGCTATGA-AAGGCACTTAGTGTGCGAATCAGAAT
*
50783005 AGCTTCGGCTATGA-AAG
64 AGCTTCGGCTAT-ATAAA
* * * *** *
50783022 GCACTTAGTGTGCGAGATTATAATAGCTTCAGCTATGCTTTGGCACTTAGTGTGCGTATC-GAGA
1 GCACTTAGTGTACGA-ATCAGAATAGCTTCAGCTATG-AAAGGCACTTAGTGTGCGAATCAGA-A
50783086 TAGCTTCGGCTATATAAA
63 TAGCTTCGGCTATATAAA
* * *
50783104 GCACTTAGTGTACGAATCAGAATAGCTTCGGCTATGAAAGGCACTTAGTGTGCGAGATTATAATA
1 GCACTTAGTGTACGAATCAGAATAGCTTCAGCTATGAAAGGCACTTAGTGTGCGA-ATCAGAATA
*
50783169 GCTTCAGCTAT
65 GCTTCGGCTAT
50783180 GCTTTGGCAC
Statistics
Matches: 128, Mismatches: 22, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
80 29 0.23
81 51 0.40
82 48 0.38
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (80 bp):
GCACTTAGTGTACGAATCAGAATAGCTTCAGCTATGAAAGGCACTTAGTGTGCGAATCAGAATAG
CTTCGGCTATATAAA
Found at i:50783155 original size:122 final size:122
Alignment explanation
Indices: 50782933--50783198 Score: 525
Period size: 122 Copynumber: 2.2 Consensus size: 122
50782923 GATAAATCGA
50782933 CTATG-TTTGGCACTTAGTGTGCGTATCGAGATAGCTTCGGCTATATAAAGCACTTAGTGTACGA
1 CTATGCTTTGGCACTTAGTGTGCGTATCGAGATAGCTTCGGCTATATAAAGCACTTAGTGTACGA
50782997 ATCAGAATAGCTTCGGCTATGAAAGGCACTTAGTGTGCGAGATTATAATAGCTTCAG
66 ATCAGAATAGCTTCGGCTATGAAAGGCACTTAGTGTGCGAGATTATAATAGCTTCAG
50783054 CTATGCTTTGGCACTTAGTGTGCGTATCGAGATAGCTTCGGCTATATAAAGCACTTAGTGTACGA
1 CTATGCTTTGGCACTTAGTGTGCGTATCGAGATAGCTTCGGCTATATAAAGCACTTAGTGTACGA
50783119 ATCAGAATAGCTTCGGCTATGAAAGGCACTTAGTGTGCGAGATTATAATAGCTTCAG
66 ATCAGAATAGCTTCGGCTATGAAAGGCACTTAGTGTGCGAGATTATAATAGCTTCAG
50783176 CTATGCTTTGGCACTTAGTGTGC
1 CTATGCTTTGGCACTTAGTGTGC
50783199 AAGATATCGA
Statistics
Matches: 144, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
121 5 0.03
122 139 0.97
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (122 bp):
CTATGCTTTGGCACTTAGTGTGCGTATCGAGATAGCTTCGGCTATATAAAGCACTTAGTGTACGA
ATCAGAATAGCTTCGGCTATGAAAGGCACTTAGTGTGCGAGATTATAATAGCTTCAG
Found at i:50791360 original size:31 final size:31
Alignment explanation
Indices: 50791312--50791426 Score: 187
Period size: 31 Copynumber: 3.7 Consensus size: 31
50791302 TTAGTCTTGA
* *
50791312 CATAT-ACTGGGCTGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
50791342 CATATCACTGGGTCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
50791373 CATATCACTAGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
50791404 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
50791427 ACTGTAAATG
Statistics
Matches: 78, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
30 5 0.06
31 73 0.94
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:50791495 original size:42 final size:42
Alignment explanation
Indices: 50791448--50791541 Score: 161
Period size: 42 Copynumber: 2.2 Consensus size: 42
50791438 TATGGCCCTT
* *
50791448 AAGCCCATTTCAATGTCACACGTAATGTCAATGGATGTATGC
1 AAGCCCATTTCAATATCACACGTAATGTCAATGAATGTATGC
*
50791490 AAGCCCATTTCAATATCACATGTAATGTCAATGAATGTATGC
1 AAGCCCATTTCAATATCACACGTAATGTCAATGAATGTATGC
50791532 AAGCCCATTT
1 AAGCCCATTT
50791542 GGGGAGACTA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (42 bp):
AAGCCCATTTCAATATCACACGTAATGTCAATGAATGTATGC
Found at i:50791726 original size:25 final size:23
Alignment explanation
Indices: 50791662--50791759 Score: 88
Period size: 25 Copynumber: 4.0 Consensus size: 23
50791652 ACTTTATCAT
**
50791662 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACTGG-GGCAAAGCC-CTTTTA
50791687 ATAACTGGGGCAAAGCCCTTTCTA
1 ATAACTGGGGCAAAGCCCTTT-TA
* *
50791711 ATAAATTGGGGCAAAGCCCTTTTCG
1 AT-AACTGGGGCAAAGCCCTTTT-A
* *
50791736 GTAAACTGGGGCAGAGCCCTTTTA
1 AT-AACTGGGGCAAAGCCCTTTTA
50791760 GCACTTCCTC
Statistics
Matches: 62, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
23 4 0.06
24 12 0.19
25 46 0.74
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (23 bp):
ATAACTGGGGCAAAGCCCTTTTA
Found at i:50792444 original size:27 final size:27
Alignment explanation
Indices: 50792414--50792478 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
50792404 GGGCATATTC
*
50792414 GTCATTTTACCATCCAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
50792441 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
50792468 GTCTTTTTACC
1 GTCATTTTACC
50792479 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.26, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:50792562 original size:27 final size:27
Alignment explanation
Indices: 50792509--50792745 Score: 188
Period size: 27 Copynumber: 8.7 Consensus size: 27
50792499 TTTCATCCTA
* * * *
50792509 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* **
50792536 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* ** * *
50792563 CAATGGTATTTCTATAATTTTTAAAAAGT
1 CAAGGGTATTTCGGTAA-TTTTACAAA-C
* ** *
50792592 CAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
50792619 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAC
** *
50792646 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
50792673 C-AGTGGTATTTCGGTAATTTTACAAAC
1 CAAG-GGTATTTCGGTAATTTTACAAAC
* * *
50792700 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
50792727 TAGGGGTATTTTGGTAATT
1 CAAGGGTATTTCGGTAATT
50792746 CTATCCTACA
Statistics
Matches: 173, Mismatches: 33, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
26 2 0.01
27 141 0.82
28 15 0.09
29 15 0.09
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTACAAAC
Found at i:50792712 original size:81 final size:81
Alignment explanation
Indices: 50792596--50792745 Score: 223
Period size: 81 Copynumber: 1.9 Consensus size: 81
50792586 AAAAGTCAAG
* ** *
50792596 GGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGG
1 GGTATTTCGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCGG
50792660 TAATTTCACAAACCAGT
65 TAATTTCACAAACCAGT
*
50792677 GGTATTTCGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
1 GGTATTTCGGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGG
50792741 TAATT
65 TAATT
50792746 CTATCCTACA
Statistics
Matches: 62, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
80 1 0.02
81 59 0.95
82 2 0.03
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.41
Consensus pattern (81 bp):
GGTATTTCGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGT
AATTTCACAAACCAGT
Found at i:50792759 original size:54 final size:54
Alignment explanation
Indices: 50792595--50792775 Score: 177
Period size: 54 Copynumber: 3.4 Consensus size: 54
50792585 AAAAAGTCAA
* *** * * * *
50792595 GGGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTCGGTAATTTCACAAACCAGGGGTATTTCGGTAATTCTACAAACTAG
* *
50792648 AGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTCGGTAATTTTACAAACTAG
1 -GGGTATTTCGGTAATTTCACAAACCAGGGGTATTTCGGTAATTCTACAAACTAG
* * * * **
50792703 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTATCCTAC-AG
1 GGGTATTTCGGTAATTTCACAAACCAGGGGTATTTCGGTAATTCTA-CAAACTAG
*
50792757 GGGTATTTCAGTAATTTCA
1 GGGTATTTCGGTAATTTCA
50792776 TAATCGAGGG
Statistics
Matches: 106, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
54 101 0.95
55 5 0.05
ACGTcount: A:0.28, C:0.10, G:0.22, T:0.40
Consensus pattern (54 bp):
GGGTATTTCGGTAATTTCACAAACCAGGGGTATTTCGGTAATTCTACAAACTAG
Found at i:50792762 original size:81 final size:81
Alignment explanation
Indices: 50792595--50792773 Score: 213
Period size: 81 Copynumber: 2.2 Consensus size: 81
50792585 AAAAAGTCAA
* ** *
50792595 GGGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGG
1 GGGTATTTCAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGG
50792660 TAATTTCACAAACCAG
66 TAATTTCACAAACCAG
* * *
50792676 TGGTATTTCGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTT
1 GGGTATTTCAGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTC
**
50792739 GGTAA-TTCTATCCTA-CAG
64 GGTAATTTC-A-CAAACCAG
50792757 GGGTATTTCAGTAATTT
1 GGGTATTTCAGTAATTT
50792774 CATAATCGAG
Statistics
Matches: 84, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
80 4 0.05
81 76 0.90
82 4 0.05
ACGTcount: A:0.27, C:0.10, G:0.22, T:0.41
Consensus pattern (81 bp):
GGGTATTTCAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGG
TAATTTCACAAACCAG
Found at i:50792785 original size:27 final size:26
Alignment explanation
Indices: 50792616--50792785 Score: 112
Period size: 27 Copynumber: 6.3 Consensus size: 26
50792606 TAATTTTGTA
* *
50792616 AATCAGGGGTATTTTGGTAATTTTAC
1 AATCAGGGGTATTTCGGTAATTTCAC
*
50792642 AAAT-TGAGGGTATTTCGGTAATTTCAC
1 -AATCAG-GGGTATTTCGGTAATTTCAC
* * *
50792669 AAACCAGTGGTATTTCGGTAATTTTAC
1 -AATCAGGGGTATTTCGGTAATTTCAC
* * *
50792696 AAACTAGGGGTATTTTGGTAATTTTAC
1 AATC-AGGGGTATTTCGGTAATTTCAC
* *
50792723 AAACTAGGGGTATTTTGGTAA-TTCTATC
1 AATC-AGGGGTATTTCGGTAATTTC-A-C
* * *
50792751 -CTACAGGGGTATTTCAGTAATTTCAT
1 AAT-CAGGGGTATTTCGGTAATTTCAC
50792777 AATCGAGGG
1 AATC-AGGG
50792786 TAAAATGGTA
Statistics
Matches: 117, Mismatches: 17, Indels: 18
0.77 0.11 0.12
Matches are distributed among these distances:
26 7 0.06
27 104 0.89
28 6 0.05
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.38
Consensus pattern (26 bp):
AATCAGGGGTATTTCGGTAATTTCAC
Found at i:50792807 original size:27 final size:27
Alignment explanation
Indices: 50792777--50792893 Score: 144
Period size: 27 Copynumber: 4.3 Consensus size: 27
50792767 GTAATTTCAT
*
50792777 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
50792804 AATCGAGCGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
50792831 AATCGAAGGTGAAACGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
50792858 AATCGAGGGAAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
50792885 AATCGAGGG
1 AATCGAGGG
50792894 CATTTCAGTA
Statistics
Matches: 74, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 74 1.00
ACGTcount: A:0.41, C:0.10, G:0.23, T:0.26
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:50798947 original size:27 final size:27
Alignment explanation
Indices: 50798916--50799093 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
50798906 TAAATTGTAC
50798916 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
50798943 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50798969 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
50798997 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
50799025 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50799052 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
50799079 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50799094 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:50799030 original size:82 final size:81
Alignment explanation
Indices: 50798917--50799072 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
50798907 AAATTGTACA
* *
50798917 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
50798981 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
50798998 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
50799063 TGCGAGTTGA
65 TGCGAATTGA
50799073 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:50799084 original size:82 final size:81
Alignment explanation
Indices: 50798913--50799093 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
50798903 GATTAAATTG
* *
50798913 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
50798978 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
50798994 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
50799058 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
50799076 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
50799094 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:50807010 original size:27 final size:27
Alignment explanation
Indices: 50806979--50807156 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
50806969 TAAATTGTAC
50806979 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
50807006 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50807032 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
50807060 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
50807088 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50807115 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
50807142 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50807157 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:50807093 original size:82 final size:81
Alignment explanation
Indices: 50806980--50807135 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
50806970 AAATTGTACA
* *
50806980 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
50807044 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
50807061 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
50807126 TGCGAGTTGA
65 TGCGAATTGA
50807136 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:50807147 original size:82 final size:81
Alignment explanation
Indices: 50806976--50807156 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
50806966 GATTAAATTG
* *
50806976 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
50807041 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
50807057 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
50807121 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
50807139 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
50807157 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:50812126 original size:79 final size:82
Alignment explanation
Indices: 50812015--50812199 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
50812005 GCTACTCGTT
* *
50812015 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
50812078 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
50812095 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
50812158 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
50812175 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
50812200 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:50812199 original size:40 final size:40
Alignment explanation
Indices: 50811996--50812199 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
50811986 CGGAATTTAA
** *
50811996 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
50812036 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
50812076 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
50812115 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
50812155 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
50812195 CCGGA
1 CCGGA
50812200 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:50816399 original size:187 final size:187
Alignment explanation
Indices: 50816078--50816450 Score: 674
Period size: 187 Copynumber: 2.0 Consensus size: 187
50816068 CAACACTAGC
50816078 CTCAGATGCTCAGCATGTTCGGTCTCATCTCTCGAATAGACCAAGATGTCATCAATAAACACAAC
1 CTCAGATGCTCAGCATGTTCGGTCTCATCTCTCGAATAGACCAAGATGTCATCAATAAACACAAC
*
50816143 TACGAACCGATCCAAATACGGCCTGAAGATTCGATTCATCAAATCCATAAACACCGCAGGGGCAT
66 TACGAACCGATCCAAATACGGCCTGAAGATCCGATTCATCAAATCCATAAACACCGCAGGGGCAT
50816208 TAGTGAGCCCAAACGGCATCACTAAGAATTCGTAGTGACCATATCTCGTTCTGAAGT
131 TAGTGAGCCCAAACGGCATCACTAAGAATTCGTAGTGACCATATCTCGTTCTGAAGT
* ** *
50816265 CTCAGGTGCTCAGCATGTTCGGTCTCATCTCTTTAATAGACCAAGATGTCATCAATGAACACAAC
1 CTCAGATGCTCAGCATGTTCGGTCTCATCTCTCGAATAGACCAAGATGTCATCAATAAACACAAC
* * *
50816330 TACGAACCGATCCAAATATGGTCTGAAGATCCGATTCATCAAATCCATAAATACCGCAGGGGCAT
66 TACGAACCGATCCAAATACGGCCTGAAGATCCGATTCATCAAATCCATAAACACCGCAGGGGCAT
50816395 TAGTGAGCCCAAACGGCATCACTAAGAATTCGTAGTGACCATATCTCGTTCTGAAG
131 TAGTGAGCCCAAACGGCATCACTAAGAATTCGTAGTGACCATATCTCGTTCTGAAG
50816451 GCAGTTTTGG
Statistics
Matches: 178, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
187 178 1.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.24
Consensus pattern (187 bp):
CTCAGATGCTCAGCATGTTCGGTCTCATCTCTCGAATAGACCAAGATGTCATCAATAAACACAAC
TACGAACCGATCCAAATACGGCCTGAAGATCCGATTCATCAAATCCATAAACACCGCAGGGGCAT
TAGTGAGCCCAAACGGCATCACTAAGAATTCGTAGTGACCATATCTCGTTCTGAAGT
Found at i:50825769 original size:40 final size:40
Alignment explanation
Indices: 50825706--50825886 Score: 222
Period size: 40 Copynumber: 4.5 Consensus size: 40
50825696 TATTCGGATG
* * *
50825706 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * *
50825746 AAACCCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
50825786 ATATCCGGGCTAAATCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
50825826 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
50825866 ATATTC-GGCTAAGTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
50825887 ATACTTGGGT
Statistics
Matches: 119, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 13 0.11
40 104 0.87
41 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:50831294 original size:47 final size:47
Alignment explanation
Indices: 50831216--50831510 Score: 385
Period size: 47 Copynumber: 6.2 Consensus size: 47
50831206 CCCTTCGGGA
* * * * * * *
50831216 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACT-CGG
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
50831262 CTCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CT-TATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
**
50831310 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* * *
50831357 CTTATCCCATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTAT--CACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* * *
50831406 CTTATCGCACATATACAATTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
50831453 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
50831502 CTTATCACA
1 CTTATCACA
50831511 ATTTAGAATT
Statistics
Matches: 217, Mismatches: 26, Indels: 11
0.85 0.10 0.04
Matches are distributed among these distances:
46 2 0.01
47 126 0.58
48 3 0.01
49 86 0.40
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
Found at i:50831392 original size:49 final size:48
Alignment explanation
Indices: 50831271--50831507 Score: 354
Period size: 49 Copynumber: 4.9 Consensus size: 48
50831261 GCTCTGTCAC
*
50831271 ATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTAT-CAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCCAT
**
50831318 GCATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCCCAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTAT-CCAT
* *
50831367 ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCGC--
1 ATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATC-CAT
* *
50831414 ACATATACAATTTCACATTCATCACATCGGCCATTAAGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATC-CAT
*
50831463 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATC
50831508 ACAATTTAGA
Statistics
Matches: 170, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
47 84 0.49
48 1 0.01
49 85 0.50
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (48 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCCAT
Found at i:50831411 original size:96 final size:96
Alignment explanation
Indices: 50831271--50831510 Score: 426
Period size: 96 Copynumber: 2.5 Consensus size: 96
50831261 GCTCTGTCAC
* * *
50831271 ATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAATTTCACAT
*
50831336 TCATCACATCGGCCATTAAGCCTTATCCCAT
66 TCATCACATCGGCCATTAAGCCTTATCACAT
* *
50831367 ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCGCACATATACAATTTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAATTTCACAT
50831432 TCATCACATCGGCCATTAAGCCTTATCACAT
66 TCATCACATCGGCCATTAAGCCTTATCACAT
50831463 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
50831511 ATTTAGAATT
Statistics
Matches: 136, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
96 136 1.00
ACGTcount: A:0.31, C:0.30, G:0.08, T:0.32
Consensus pattern (96 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAATTTCACAT
TCATCACATCGGCCATTAAGCCTTATCACAT
Found at i:50835352 original size:22 final size:22
Alignment explanation
Indices: 50835327--50835402 Score: 73
Period size: 22 Copynumber: 3.5 Consensus size: 22
50835317 AAAGCATTGT
50835327 AGTGCTAAACAGAGAGCACAAG
1 AGTGCTAAACAGAGAGCACAAG
** *
50835349 AGTGCTAAGTAGAGAGCAC-CG
1 AGTGCTAAACAGAGAGCACAAG
* * *
50835370 AAGTGCTGAACAGAGAGGACAAA
1 -AGTGCTAAACAGAGAGCACAAG
*
50835393 AGTGTTAAAC
1 AGTGCTAAAC
50835403 CTGTACAAGC
Statistics
Matches: 41, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
21 1 0.02
22 40 0.98
ACGTcount: A:0.42, C:0.16, G:0.29, T:0.13
Consensus pattern (22 bp):
AGTGCTAAACAGAGAGCACAAG
Found at i:50836070 original size:22 final size:23
Alignment explanation
Indices: 50836043--50836085 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
50836033 CCTATGTTCA
50836043 AAATTAA-CAACTTTCACTTTAC
1 AAATTAATCAACTTTCACTTTAC
**
50836065 AAATTAATCATTTTTCACTTT
1 AAATTAATCAACTTTCACTTT
50836086 TAGGCTTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.37, C:0.19, G:0.00, T:0.44
Consensus pattern (23 bp):
AAATTAATCAACTTTCACTTTAC
Found at i:50836960 original size:21 final size:22
Alignment explanation
Indices: 50836924--50836965 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
50836914 CATGCTTTCA
50836924 ATTTTCAAAAATTAAAAAAATT
1 ATTTTCAAAAATTAAAAAAATT
*
50836946 ATTTTTAAAAA-TAAAAAAAT
1 ATTTTCAAAAATTAAAAAAAT
50836966 AGCATAAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (22 bp):
ATTTTCAAAAATTAAAAAAATT
Found at i:50837421 original size:36 final size:36
Alignment explanation
Indices: 50837381--50837502 Score: 217
Period size: 36 Copynumber: 3.4 Consensus size: 36
50837371 GTCTTTGTAC
50837381 TTTTAAAAATTTAAAATTTAGTTCTTATACTATTAT
1 TTTTAAAAATTTAAAATTTAGTTCTTATACTATTAT
*
50837417 TTTTAAGAATTTAAAATTTAGTTCTTATACTATTAT
1 TTTTAAAAATTTAAAATTTAGTTCTTATACTATTAT
* *
50837453 TTTTAAGAATTTAAAATTTAGTTCTTATACCATTAT
1 TTTTAAAAATTTAAAATTTAGTTCTTATACTATTAT
50837489 TTTTAAAAATTTAA
1 TTTTAAAAATTTAA
50837503 TTTTCTATTT
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 83 1.00
ACGTcount: A:0.39, C:0.06, G:0.04, T:0.52
Consensus pattern (36 bp):
TTTTAAAAATTTAAAATTTAGTTCTTATACTATTAT
Found at i:50839475 original size:20 final size:20
Alignment explanation
Indices: 50839452--50839490 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
50839442 AGAATTTTTA
*
50839452 AAAAATATCATAAAATTATT
1 AAAAATATAATAAAATTATT
* *
50839472 AAAATTTTAATAAAATTAT
1 AAAAATATAATAAAATTAT
50839491 AAGGTTTTAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (20 bp):
AAAAATATAATAAAATTATT
Found at i:50839562 original size:10 final size:10
Alignment explanation
Indices: 50839547--50839582 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
50839537 CTAAACCAAC
50839547 AATTTTTTAA
1 AATTTTTTAA
50839557 AATTTTTTAA
1 AATTTTTTAA
*
50839567 AATTTTAT-A
1 AATTTTTTAA
50839576 AATTTTT
1 AATTTTT
50839583 AATTGTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
9 7 0.29
10 17 0.71
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (10 bp):
AATTTTTTAA
Found at i:50840086 original size:133 final size:133
Alignment explanation
Indices: 50839715--50840616 Score: 1745
Period size: 133 Copynumber: 6.8 Consensus size: 133
50839705 TTTATTTTTT
* *
50839715 AAAAATATTTTCCGATATTTTTTAATATTTAAGATTTTTTTAAACTTTCATTGATACGTAGCAGT
1 AAAAATATTTTCTGATATTTTTTAATATTTAAGATTTTTTTTAACTTTCATTGATACGTAGCAGT
50839780 GTGTCATTGGAGGTTTTAATTTTAATTTTTAATGAAAATATATAGATGGGTAACGGGTATACAAA
66 GTGTCATTGGAGGTTTTAATTTTAATTTTTAATGAAAATATATAGATGGGTAACGGGTATACAAA
50839845 ATG
131 ATG
*
50839848 -AAAATATTTTCTGATATTTTTTAATATTTAAGATTTTTTTAAACTTTCATTGATACGTAGCAGT
1 AAAAATATTTTCTGATATTTTTTAATATTTAAGATTTTTTTTAACTTTCATTGATACGTAGCAGT
50839912 GTGTCATTGGAGGTTTTAATTTTAATTTTTAATGAAAATATATAGATGGGTAACGGGTATACAAA
66 GTGTCATTGGAGGTTTTAATTTTAATTTTTAATGAAAATATATAGATGGGTAACGGGTATACAAA
50839977 ATG
131 ATG
50839980 AAAAATATTTTCTGATATTTTTTAATATTTAAGATTTTTTTTAACTTTCATTGATACGTAGCAGT
1 AAAAATATTTTCTGATATTTTTTAATATTTAAGATTTTTTTTAACTTTCATTGATACGTAGCAGT
50840045 GTGTCATTGGAGGTTTTAATTTTAATTTTTAATGAAAATATATAGATGGGTAACGGGTATACAAA
66 GTGTCATTGGAGGTTTTAATTTTAATTTTTAATGAAAATATATAGATGGGTAACGGGTATACAAA
50840110 ATG
131 ATG
50840113 AAAAATATTTTCTGATATTTTTTAATATTTAAGATTTTTTTTAACTTTCATTGATACGTAGCAGT
1 AAAAATATTTTCTGATATTTTTTAATATTTAAGATTTTTTTTAACTTTCATTGATACGTAGCAGT
50840178 GTGTCATTGGAGGTTTTAATTTTAATTTTTAATGAAAATATATAGATGGGTAACGGGTATACAAA
66 GTGTCATTGGAGGTTTTAATTTTAATTTTTAATGAAAATATATAGATGGGTAACGGGTATACAAA
50840243 ATG
131 ATG
*
50840246 -AAAATATTTTCTGATATTTTTTAATATTTAAGATTTTTTTTTAACTTCCATTGATACGTAGCAG
1 AAAAATATTTTCTGATATTTTTTAATATTTAAGA-TTTTTTTTAACTTTCATTGATACGTAGCAG
50840310 TGTGTCATTGGAGGTTTTAATTTTAATTTTTAATGAAAATATATAGATGGGTAACGGGTATACAA
65 TGTGTCATTGGAGGTTTTAATTTTAATTTTTAATGAAAATATATAGATGGGTAACGGGTATACAA
50840375 AATG
130 AATG
50840379 AAAAATATTTTCTGATATTTTTTAATATTTAAGATTTTTTTTAACTTTCATTGATACGTAGCAGT
1 AAAAATATTTTCTGATATTTTTTAATATTTAAGATTTTTTTTAACTTTCATTGATACGTAGCAGT
50840444 GTGTCATTGGAGGTTTTAATTTTAATTTTTAATGAAAATATATAGATGGGTAACGGGTATACAAA
66 GTGTCATTGGAGGTTTTAATTTTAATTTTTAATGAAAATATATAGATGGGTAACGGGTATACAAA
50840509 ATG
131 ATG
50840512 AAAAATATTTTCTGATATTTTTTAATATTTAAGATTTTTTTTAACTTTCATTGATACGTAGCAGT
1 AAAAATATTTTCTGATATTTTTTAATATTTAAGATTTTTTTTAACTTTCATTGATACGTAGCAGT
50840577 GTGTCATTGGAGGTTTTAATTTTAATTTTTAATGAAAATA
66 GTGTCATTGGAGGTTTTAATTTTAATTTTTAATGAAAATA
50840617 CAAAATAGAT
Statistics
Matches: 762, Mismatches: 4, Indels: 6
0.99 0.01 0.01
Matches are distributed among these distances:
132 164 0.22
133 565 0.74
134 33 0.04
ACGTcount: A:0.34, C:0.06, G:0.15, T:0.45
Consensus pattern (133 bp):
AAAAATATTTTCTGATATTTTTTAATATTTAAGATTTTTTTTAACTTTCATTGATACGTAGCAGT
GTGTCATTGGAGGTTTTAATTTTAATTTTTAATGAAAATATATAGATGGGTAACGGGTATACAAA
ATG
Found at i:50861522 original size:49 final size:49
Alignment explanation
Indices: 50861440--50861627 Score: 259
Period size: 49 Copynumber: 3.8 Consensus size: 49
50861430 TGAGGTCACG
* *
50861440 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGGTCGCA
* * * * *
50861489 TGCGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA--TTGGTCGCA
* *
50861540 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGGTCGCA
* *
50861589 TGTGTAGTACTAAGTGCAGGCTACCATGCATACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
50861628 GCTTCGGCTA
Statistics
Matches: 120, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
49 77 0.64
51 43 0.36
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGGTCGCA
Found at i:50861608 original size:100 final size:100
Alignment explanation
Indices: 50861435--50861627 Score: 332
Period size: 100 Copynumber: 1.9 Consensus size: 100
50861425 TATTGTGAGG
50861435 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGCGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGCGTAGTACT
* * *
50861500 AAGTGCAGGCTACTATGCGTACCTGATAACTTTGA
66 AAGTGCAGGCTACCATGCATACCAGATAACTTTGA
* * *
50861535 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGCGTAGTACT
50861600 AAGTGCAGGCTACCATGCATACCAGATA
66 AAGTGCAGGCTACCATGCATACCAGATA
50861628 GCTTCGGCTA
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 87 1.00
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.28
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGCGTAGTACT
AAGTGCAGGCTACCATGCATACCAGATAACTTTGA
Found at i:50863933 original size:21 final size:20
Alignment explanation
Indices: 50863909--50863947 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
50863899 TCGCGTTGGT
*
50863909 CACACGGGCGCGTTGCCCTTC
1 CACACAGGCGCG-TGCCCTTC
*
50863930 CACACAGGCGTGTGCCCT
1 CACACAGGCGCGTGCCCT
50863948 GTTTTAAGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.13, C:0.41, G:0.28, T:0.18
Consensus pattern (20 bp):
CACACAGGCGCGTGCCCTTC
Found at i:50864536 original size:21 final size:21
Alignment explanation
Indices: 50864510--50864552 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
50864500 TCCCCCACCT
* *
50864510 CTTCCGATCCCTTAGTATGCC
1 CTTCCGATCCCTCAGCATGCC
*
50864531 CTTCCGATTCCTCAGCATGCC
1 CTTCCGATCCCTCAGCATGCC
50864552 C
1 C
50864553 CGATAGCTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.14, C:0.42, G:0.14, T:0.30
Consensus pattern (21 bp):
CTTCCGATCCCTCAGCATGCC
Found at i:50869410 original size:55 final size:55
Alignment explanation
Indices: 50869310--50869426 Score: 155
Period size: 55 Copynumber: 2.1 Consensus size: 55
50869300 TGCGATATGG
** *
50869310 CCGTGGTCGAGCCTGCCAAAACAATACGGGCGTGGGACACACCCGTGTGGAAGAA-
1 CCGTGGTCGAGCCTGCCAAAACAATACGGGCGTGCAACACACCCGTCTGGAA-AAC
* * **
50869365 CCGTGGTCGAGCCTGCCAAAACAGTACGGGCGTTCAACATGCCCGTCTGGAAAAC
1 CCGTGGTCGAGCCTGCCAAAACAATACGGGCGTGCAACACACCCGTCTGGAAAAC
50869420 CCGTGGT
1 CCGTGGT
50869427 TGAACCTGTT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
54 2 0.04
55 52 0.96
ACGTcount: A:0.25, C:0.29, G:0.31, T:0.15
Consensus pattern (55 bp):
CCGTGGTCGAGCCTGCCAAAACAATACGGGCGTGCAACACACCCGTCTGGAAAAC
Found at i:50872897 original size:27 final size:26
Alignment explanation
Indices: 50872862--50872973 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
50872852 AGCATGGCTG
* *
50872862 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
50872888 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
50872916 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
50872943 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
50872970 CCAG
1 CCAG
50872974 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.70
28 17 0.22
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:50872954 original size:54 final size:54
Alignment explanation
Indices: 50872862--50872973 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
50872852 AGCATGGCTG
* *
50872862 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
50872916 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
50872970 CCAG
1 CCAG
50872974 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:50874424 original size:24 final size:24
Alignment explanation
Indices: 50874407--50874463 Score: 114
Period size: 24 Copynumber: 2.4 Consensus size: 24
50874397 TTATCTGCTT
50874407 CTAAATCCTATCCCTTATCAACTC
1 CTAAATCCTATCCCTTATCAACTC
50874431 CTAAATCCTATCCCTTATCAACTC
1 CTAAATCCTATCCCTTATCAACTC
50874455 CTAAATCCT
1 CTAAATCCT
50874464 CTCCTAACAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.30, C:0.37, G:0.00, T:0.33
Consensus pattern (24 bp):
CTAAATCCTATCCCTTATCAACTC
Found at i:50882713 original size:27 final size:27
Alignment explanation
Indices: 50882683--50882860 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
50882673 ATAATTAGCC
* * * *
50882683 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
50882710 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
50882737 CGCACACTTAGTGCCACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
50882765 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
50882792 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
50882819 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
50882846 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50882861 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.81
28 25 0.19
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:50882822 original size:82 final size:81
Alignment explanation
Indices: 50882704--50882859 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
50882694 TGCTATATAA
* *
50882704 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCCACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
50882769 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
50882786 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
50882850 CACTTAGTGC
65 CACTTAGTGC
50882860 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:50887604 original size:27 final size:27
Alignment explanation
Indices: 50887573--50887677 Score: 133
Period size: 27 Copynumber: 3.9 Consensus size: 27
50887563 CTGCCAGAAT
* *
50887573 AGATAATGTGACAGAGTCACCAGATAC
1 AGATAATGTGGCAGAGCCACCAGATAC
*
50887600 AGATAATCGTGGCAGAGCCACCAGA-AT
1 AGATAAT-GTGGCAGAGCCACCAGATAC
50887627 AGATATATGTGGCAGAGCCACCAGAT-C
1 AGATA-ATGTGGCAGAGCCACCAGATAC
*
50887654 AGATAATTGTGGCATAGCCACCAG
1 AGATAA-TGTGGCAGAGCCACCAG
50887678 GACGCTTCCT
Statistics
Matches: 69, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
26 1 0.01
27 51 0.74
28 17 0.25
ACGTcount: A:0.36, C:0.21, G:0.25, T:0.18
Consensus pattern (27 bp):
AGATAATGTGGCAGAGCCACCAGATAC
Found at i:50887657 original size:54 final size:54
Alignment explanation
Indices: 50887566--50887677 Score: 172
Period size: 54 Copynumber: 2.1 Consensus size: 54
50887556 AGCATGGCTG
*
50887566 CCAGAATAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAATAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
50887620 CCAGAATAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAATAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
50887674 CCAG
1 CCAG
50887678 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
54 35 0.66
55 18 0.34
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (54 bp):
CCAGAATAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:50897335 original size:93 final size:95
Alignment explanation
Indices: 50897222--50897393 Score: 251
Period size: 93 Copynumber: 1.8 Consensus size: 95
50897212 TTTTGAGAGC
* * *
50897222 CAGTGTAAGACCATGACTGGGACATGGCATCGACATTAAGATGAGAGCTAGTGTAAGA-CATGTC
1 CAGTGTAAGACCATGACTGGGACATGGAATCAAC-TTAAGATGAGAGCCAGTGTAAGACCATGTC
50897286 TGGGA-AT-GCATCGATGACGAGATGATAGT
65 TGGGACATGGCATCGATGACGAGATGATAGT
* * * *
50897315 CAGTGTAAGACCATGTCTGGGACATGGAATCAACTTGAGATGTGAGCCAGTGTAAGACCTTGTCT
1 CAGTGTAAGACCATGACTGGGACATGGAATCAACTTAAGATGAGAGCCAGTGTAAGACCATGTCT
50897380 GGGACATGGCATCG
66 GGGACATGGCATCG
50897394 GCACTTTACC
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
92 20 0.29
93 41 0.59
94 2 0.03
95 6 0.09
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (95 bp):
CAGTGTAAGACCATGACTGGGACATGGAATCAACTTAAGATGAGAGCCAGTGTAAGACCATGTCT
GGGACATGGCATCGATGACGAGATGATAGT
Found at i:50897366 original size:47 final size:47
Alignment explanation
Indices: 50897218--50897392 Score: 191
Period size: 47 Copynumber: 3.7 Consensus size: 47
50897208 CACATTTTGA
* * * *
50897218 GAGCCAGTGTAAGACCATGACTGGGACATGGCATCGACATTAAGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAAC-TTGAGATGT
*
50897266 GAGCTAGTGTAAGA-CATGTCTGGGA-AT-GCATCGATGAC--GAGATGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-A--ACTTGAGATG-T
* *
50897312 -AGTCAGTGTAAGACCATGTCTGGGACATGGAATCAACTTGAGATGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACTTGAGATGT
*
50897358 GAGCCAGTGTAAGACCTTGTCTGGGACATGGCATC
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
50897393 GGCACTTTAC
Statistics
Matches: 106, Mismatches: 11, Indels: 21
0.77 0.08 0.15
Matches are distributed among these distances:
45 23 0.22
46 14 0.13
47 50 0.47
48 19 0.18
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACTTGAGATGT
Found at i:50899791 original size:67 final size:67
Alignment explanation
Indices: 50899683--50899813 Score: 217
Period size: 67 Copynumber: 2.0 Consensus size: 67
50899673 CTTAGACATG
*
50899683 CCCGTGTGTCTAGGCCATGTCAAAACAGGGCATACATACTGACTTACTCACACGACCACAAGACC
1 CCCGTGTGTCTAGGCCATGTCAAAACAGGGCATACATACTGACCTACTCACACGACCACAAGACC
50899748 CA
66 CA
* * **
50899750 CCCGTGTGTCTAGGTCATGTCAAAACATGGCATACATACTGACCTACTCACGTGACCACAAGAC
1 CCCGTGTGTCTAGGCCATGTCAAAACAGGGCATACATACTGACCTACTCACACGACCACAAGAC
50899814 ACGCTCGGGT
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
67 59 1.00
ACGTcount: A:0.31, C:0.31, G:0.18, T:0.20
Consensus pattern (67 bp):
CCCGTGTGTCTAGGCCATGTCAAAACAGGGCATACATACTGACCTACTCACACGACCACAAGACC
CA
Found at i:50902378 original size:17 final size:18
Alignment explanation
Indices: 50902342--50902382 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
50902332 CCTAGAATCT
50902342 CACACGCCCGTGTGGGCC
1 CACACGCCCGTGTGGGCC
*
50902360 CACATGCCCGTGT-GGCC
1 CACACGCCCGTGTGGGCC
50902377 CACACG
1 CACACG
50902383 GCCTAATTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.15, C:0.44, G:0.29, T:0.12
Consensus pattern (18 bp):
CACACGCCCGTGTGGGCC
Found at i:50903654 original size:26 final size:27
Alignment explanation
Indices: 50903622--50903794 Score: 165
Period size: 27 Copynumber: 6.4 Consensus size: 27
50903612 CACAACTAAA
50903622 GCTTTTCTTTCATATTTCTCCACAAAG
1 GCTTTTCTTTCATATTTCTCCACAAAG
* * * *
50903649 GCTTTCCTTTTATATTTCTCCAAAAAA
1 GCTTTTCTTTCATATTTCTCCACAAAG
* *
50903676 GCTTTTCATTCATATTTTTTGCCACAAAG
1 GCTTTTCTTTCATA-TTTCT-CCACAAAG
** *
50903705 GCTTTTCATTT-ATATTTCGACAAAAAG
1 GCTTTTC-TTTCATATTTCTCCACAAAG
* * *
50903732 GCTATTCATTCATATCT-TCCACAAAG
1 GCTTTTCTTTCATATTTCTCCACAAAG
*
50903758 G-TTATTCTTTCATA-TTCACCACAAAG
1 GCTT-TTCTTTCATATTTCTCCACAAAG
50903784 GCTTTTCTTTC
1 GCTTTTCTTTC
50903795 CTGACATGTT
Statistics
Matches: 114, Mismatches: 25, Indels: 15
0.74 0.16 0.10
Matches are distributed among these distances:
25 2 0.02
26 34 0.30
27 53 0.46
28 7 0.06
29 16 0.14
30 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.08, T:0.43
Consensus pattern (27 bp):
GCTTTTCTTTCATATTTCTCCACAAAG
Found at i:50903718 original size:56 final size:55
Alignment explanation
Indices: 50903619--50903758 Score: 169
Period size: 56 Copynumber: 2.6 Consensus size: 55
50903609 TCACACAACT
* * **
50903619 AAAGCTTTTCTTTCATA-TTTCTCCACAAAGGCTTTCCTTTTATATTTCTCCAAA
1 AAAGCTTTTCATTCATATTTTCTCCACAAAGGCTTTCCATTTATATTTCGACAAA
* *
50903673 AAAGCTTTTCATTCATATTTTTTGCCACAAAGGCTTTTCATTTATATTTCGACAAA
1 AAAGCTTTTCATTCATATTTTCT-CCACAAAGGCTTTCCATTTATATTTCGACAAA
* * *
50903729 AAGGCTATTCATTCATA-TCT-TCCACAAAGG
1 AAAGCTTTTCATTCATATTTTCTCCACAAAGG
50903759 TTATTCTTTC
Statistics
Matches: 75, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
53 9 0.12
54 17 0.23
55 6 0.08
56 43 0.57
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.41
Consensus pattern (55 bp):
AAAGCTTTTCATTCATATTTTCTCCACAAAGGCTTTCCATTTATATTTCGACAAA
Found at i:50909245 original size:16 final size:16
Alignment explanation
Indices: 50909224--50909256 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
50909214 CATAATTGAA
*
50909224 TATAATTAAATATAAT
1 TATAATTAAACATAAT
50909240 TATAATTAAACATAAT
1 TATAATTAAACATAAT
50909256 T
1 T
50909257 CACGTGAGCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TATAATTAAACATAAT
Found at i:50909728 original size:29 final size:29
Alignment explanation
Indices: 50909688--50909871 Score: 183
Period size: 29 Copynumber: 6.3 Consensus size: 29
50909678 ACCGAAACCT
50909688 TTTTCATATTCGATGGTCGTCACCATCCC
1 TTTTCATATTCGATGGTCGTCACCATCCC
***
50909717 TTTTCATATTCGATGGTCAAAACCATCCC
1 TTTTCATATTCGATGGTCGTCACCATCCC
* *
50909746 TTTTCATTAATCGATGGTTGTCACCATCCC
1 TTTTCA-TATTCGATGGTCGTCACCATCCC
*
50909776 TTTTCATAGTT-GATGTTCGTCACCATCCC
1 TTTTCATA-TTCGATGGTCGTCACCATCCC
* * * ** *
50909805 TTTTCATAGTC-AGTAGTTGAAACTATCCC
1 TTTTCATATTCGA-TGGTCGTCACCATCCC
* * *
50909834 TTTTTCATATTCAATAGTTGTCACCATCCC
1 -TTTTCATATTCGATGGTCGTCACCATCCC
50909864 TTTTCATA
1 TTTTCATA
50909872 GTCAATAGTC
Statistics
Matches: 127, Mismatches: 22, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
28 2 0.02
29 76 0.60
30 48 0.38
31 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.11, T:0.40
Consensus pattern (29 bp):
TTTTCATATTCGATGGTCGTCACCATCCC
Found at i:50909762 original size:30 final size:30
Alignment explanation
Indices: 50909709--50909782 Score: 96
Period size: 30 Copynumber: 2.5 Consensus size: 30
50909699 GATGGTCGTC
*
50909709 ACCATCCCTTTTCA-TATTCGATGGTCAAA
1 ACCATCCCTTTTCATTAATCGATGGTCAAA
****
50909738 ACCATCCCTTTTCATTAATCGATGGTTGTC
1 ACCATCCCTTTTCATTAATCGATGGTCAAA
50909768 ACCATCCCTTTTCAT
1 ACCATCCCTTTTCAT
50909783 AGTTGATGTT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
29 14 0.36
30 25 0.64
ACGTcount: A:0.23, C:0.30, G:0.09, T:0.38
Consensus pattern (30 bp):
ACCATCCCTTTTCATTAATCGATGGTCAAA
Found at i:50909769 original size:59 final size:59
Alignment explanation
Indices: 50909688--50909811 Score: 171
Period size: 59 Copynumber: 2.1 Consensus size: 59
50909678 ACCGAAACCT
*
50909688 TTTTCA-TATTCGATGGTCGTCACCATCCCTTTTCATA-TTCGATGGTCAAAACCATCCC
1 TTTTCATTAATCGATGGTCGTCACCATCCCTTTTCATAGTT-GATGGTCAAAACCATCCC
* * ***
50909746 TTTTCATTAATCGATGGTTGTCACCATCCCTTTTCATAGTTGATGTTCGTCACCATCCC
1 TTTTCATTAATCGATGGTCGTCACCATCCCTTTTCATAGTTGATGGTCAAAACCATCCC
50909805 TTTTCAT
1 TTTTCAT
50909812 AGTCAGTAGT
Statistics
Matches: 58, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
58 6 0.10
59 50 0.86
60 2 0.03
ACGTcount: A:0.20, C:0.27, G:0.12, T:0.40
Consensus pattern (59 bp):
TTTTCATTAATCGATGGTCGTCACCATCCCTTTTCATAGTTGATGGTCAAAACCATCCC
Found at i:50909837 original size:88 final size:89
Alignment explanation
Indices: 50909688--50909873 Score: 245
Period size: 88 Copynumber: 2.1 Consensus size: 89
50909678 ACCGAAACCT
* *
50909688 TTTTCATA-TTCGATGGTCGTCACCATCCCTTTTCATATTCGATGGTCAAAACCATCCC-TTTTC
1 TTTTCATAGTTCGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCAAAACCATCCCTTTTTC
* *
50909751 ATTAATCGATGGTTGTCACCATCCC
66 A-TAATCAATAGTTGTCACCATCCC
* ** *
50909776 TTTTCATAGTT-GATGTTCGTCACCATCCCTTTTCATAGTC-AGTAGTTGAAACTATCCCTTTTT
1 TTTTCATAGTTCGATGGTCGTCACCATCCCTTTTCATAGTCGA-TAGTCAAAACCATCCCTTTTT
*
50909839 CATATTCAATAGTTGTCACCATCCC
65 CATAATCAATAGTTGTCACCATCCC
50909864 TTTTCATAGT
1 TTTTCATAGT
50909874 CAATAGTCGA
Statistics
Matches: 86, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
87 1 0.01
88 77 0.90
89 8 0.09
ACGTcount: A:0.22, C:0.26, G:0.12, T:0.40
Consensus pattern (89 bp):
TTTTCATAGTTCGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCAAAACCATCCCTTTTTC
ATAATCAATAGTTGTCACCATCCC
Found at i:50909839 original size:59 final size:57
Alignment explanation
Indices: 50909771--50909908 Score: 181
Period size: 59 Copynumber: 2.4 Consensus size: 57
50909761 GGTTGTCACC
* *
50909771 ATCCC-TTTTCATAGTTGATGTTCGTCACCATCCCTTTTCATAGTCAGTAGTTGAAACT
1 ATCCCTTTTTCATA-TTGATGTT-GTCACCATCCCTTTTCATAGTCAATAGTCGAAACT
*
50909829 ATCCCTTTTTCATATTCAATAGTTGTCACCATCCCTTTTCATAGTCAATAGTCGAAACT
1 ATCCCTTTTTCATATT-GAT-GTTGTCACCATCCCTTTTCATAGTCAATAGTCGAAACT
50909888 AT-CCTTTTTCATTAATTGATG
1 ATCCCTTTTTCA-T-ATTGATG
50909909 GTCCTCGATA
Statistics
Matches: 71, Mismatches: 4, Indels: 10
0.84 0.05 0.12
Matches are distributed among these distances:
58 17 0.24
59 48 0.68
60 6 0.08
ACGTcount: A:0.25, C:0.23, G:0.11, T:0.41
Consensus pattern (57 bp):
ATCCCTTTTTCATATTGATGTTGTCACCATCCCTTTTCATAGTCAATAGTCGAAACT
Found at i:50909891 original size:29 final size:29
Alignment explanation
Indices: 50909800--50909899 Score: 128
Period size: 29 Copynumber: 3.4 Consensus size: 29
50909790 GTTCGTCACC
*
50909800 ATCCCTTTTCATAGTCAGTAGTTGAAACT
1 ATCCCTTTTCATAGTCAATAGTTGAAACT
* ** *
50909829 ATCCCTTTTTCATATTCAATAGTTGTCACC
1 ATCCC-TTTTCATAGTCAATAGTTGAAACT
*
50909859 ATCCCTTTTCATAGTCAATAGTCGAAACT
1 ATCCCTTTTCATAGTCAATAGTTGAAACT
*
50909888 ATCCTTTTTCAT
1 ATCCCTTTTCAT
50909900 TAATTGATGG
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
29 35 0.59
30 24 0.41
ACGTcount: A:0.26, C:0.24, G:0.09, T:0.41
Consensus pattern (29 bp):
ATCCCTTTTCATAGTCAATAGTTGAAACT
Found at i:50909897 original size:88 final size:88
Alignment explanation
Indices: 50909709--50909899 Score: 208
Period size: 88 Copynumber: 2.2 Consensus size: 88
50909699 GATGGTCGTC
* * ** * *
50909709 ACCATCCCTTTTCATATTC-GATGGTCAAAACCATCCCTTTTCATTAATCGATGGTTGTCACCAT
1 ACCATCCCTTTTCATAGTCAG-TAGTTGAAACCATCCCTTTTCATTAATCAATAGTTGTCACCAT
** **
50909773 CCCTTTTCATAGTTGATGTTCGTC
65 CCCTTTTCATAGTCAATGTTCGAA
* *
50909797 ACCATCCCTTTTCATAGTCAGTAGTTGAAACTATCCCTTTTTCA-TATTCAATAGTTGTCACCAT
1 ACCATCCCTTTTCATAGTCAGTAGTTGAAACCATCCC-TTTTCATTAATCAATAGTTGTCACCAT
50909861 CCCTTTTCATAGTCAATAG-TCGAA
65 CCCTTTTCATAGTCAAT-GTTCGAA
* *
50909885 ACTATCCTTTTTCAT
1 ACCATCCCTTTTCAT
50909900 TAATTGATGG
Statistics
Matches: 86, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
88 78 0.91
89 8 0.09
ACGTcount: A:0.24, C:0.26, G:0.10, T:0.39
Consensus pattern (88 bp):
ACCATCCCTTTTCATAGTCAGTAGTTGAAACCATCCCTTTTCATTAATCAATAGTTGTCACCATC
CCTTTTCATAGTCAATGTTCGAA
Found at i:50917361 original size:16 final size:16
Alignment explanation
Indices: 50917340--50917370 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
50917330 CGGAAACATT
50917340 TTAAAGAAAATATCAC
1 TTAAAGAAAATATCAC
50917356 TTAAAGAAAATATCA
1 TTAAAGAAAATATCA
50917371 ATACCACTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.58, C:0.10, G:0.06, T:0.26
Consensus pattern (16 bp):
TTAAAGAAAATATCAC
Found at i:50919612 original size:50 final size:50
Alignment explanation
Indices: 50919534--50919633 Score: 173
Period size: 50 Copynumber: 2.0 Consensus size: 50
50919524 TTTACTTTTT
*
50919534 GGTTAATCGAGCTTACTAAGCTTATAAATGCTTACCCCTCTCTCTTTCCC
1 GGTTAATCGAGCTTACTAAGCATATAAATGCTTACCCCTCTCTCTTTCCC
* *
50919584 GGTTATTCGAGCTTACTAAGCATGTAAATGCTTACCCCTCTCTCTTTCCC
1 GGTTAATCGAGCTTACTAAGCATATAAATGCTTACCCCTCTCTCTTTCCC
50919634 TATCTCACAG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.21, C:0.30, G:0.13, T:0.36
Consensus pattern (50 bp):
GGTTAATCGAGCTTACTAAGCATATAAATGCTTACCCCTCTCTCTTTCCC
Found at i:50928040 original size:43 final size:42
Alignment explanation
Indices: 50927886--50928040 Score: 159
Period size: 43 Copynumber: 3.6 Consensus size: 42
50927876 CAATGTCATA
* * * *
50927886 TCCCAGATATGATCTTACATGTTATCACATATCGATGCCACTG
1 TCCCAGACATGGTCTTACATGTAATCACATA-CGATGCCAATG
* * * * *
50927929 TCCCAAACAGGGTCGTACATGAAATC-GATGAACGATGCCAATG
1 TCCCAGACATGGTCTTACATGTAATCACAT--ACGATGCCAATG
** *
50927972 TCCCAGACATGGTCTTACACATAATCACAATACAATGCCAATG
1 TCCCAGACATGGTCTTACATGTAATCAC-ATACGATGCCAATG
50928015 TCCCAGACATGGTCTTACATGTAATC
1 TCCCAGACATGGTCTTACATGTAATC
50928041 TCATCTCGGT
Statistics
Matches: 89, Mismatches: 19, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
42 2 0.02
43 84 0.94
44 1 0.01
45 2 0.02
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (42 bp):
TCCCAGACATGGTCTTACATGTAATCACATACGATGCCAATG
Found at i:50930312 original size:13 final size:14
Alignment explanation
Indices: 50930294--50930324 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
50930284 TATAAAATCA
50930294 CCAAAA-TTAATGT
1 CCAAAATTTAATGT
50930307 CCAAAATTTAATGT
1 CCAAAATTTAATGT
50930321 CCAA
1 CCAA
50930325 TGACCATTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.35
14 11 0.65
ACGTcount: A:0.45, C:0.19, G:0.06, T:0.29
Consensus pattern (14 bp):
CCAAAATTTAATGT
Found at i:50932847 original size:25 final size:25
Alignment explanation
Indices: 50932832--50932884 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
50932822 CTAAAGATCT
*
50932832 GTATGCTCTCACGAGCTATTAATTG
1 GTATGCTCTCACGAGCTATAAATTG
* *
50932857 GTATGTTCTCACGAGCTATAAATCG
1 GTATGCTCTCACGAGCTATAAATTG
50932882 GTA
1 GTA
50932885 ACCCTAATGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (25 bp):
GTATGCTCTCACGAGCTATAAATTG
Found at i:50936494 original size:43 final size:43
Alignment explanation
Indices: 50936412--50936541 Score: 115
Period size: 43 Copynumber: 3.0 Consensus size: 43
50936402 ATATCTTACA
* * * *
50936412 ATGCCAACGTACCAAATGTGGTCTTACATGTA-ATA-ACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-AGA-ACACATATCG
* * *
50936455 AT-CCCACTGTCCTAGACAG-GGTCTTACACGAGAACACATATTG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAGAACACATATCG
* *
50936498 ATGCCAACGTCCCAGACGTGGTCTTACATGTGAACACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAGAACACATATCG
50936541 A
1 A
50936542 AAATCCTATG
Statistics
Matches: 69, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
42 7 0.10
43 57 0.83
44 5 0.07
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAGAACACATATCG
Found at i:50943185 original size:74 final size:75
Alignment explanation
Indices: 50943029--50943190 Score: 193
Period size: 74 Copynumber: 2.2 Consensus size: 75
50943019 TATAATATGA
** * * * *
50943029 AGAACACATAATATAAGTATTAAAGGATGCAAAAGTATTACTGCAAAACATTAAACATAGATGCA
1 AGAACACATAATGCAAGTATTAAAAGATGCAAAAGTATTAATGCAAAACAGTAAACAAAGATGCA
* *
50943094 TTTAATAAAC
66 TTAAACAAAC
* *
50943104 A-AGACACATAATGCAAGT-TTAAAAGATGCAAATGTATTAATGCAAAACAGTAAAGAAAGATGC
1 AGA-ACACATAATGCAAGTATTAAAAGATGCAAAAGTATTAATGCAAAACAGTAAACAAAGATGC
* *
50943167 ATTAAACCAAT
65 ATTAAACAAAC
50943178 AGAACACATAATG
1 AGAACACATAATG
50943191 TTGCAAAACA
Statistics
Matches: 73, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
74 58 0.79
75 15 0.21
ACGTcount: A:0.51, C:0.12, G:0.14, T:0.23
Consensus pattern (75 bp):
AGAACACATAATGCAAGTATTAAAAGATGCAAAAGTATTAATGCAAAACAGTAAACAAAGATGCA
TTAAACAAAC
Found at i:50943235 original size:48 final size:48
Alignment explanation
Indices: 50943144--50943237 Score: 116
Period size: 48 Copynumber: 2.0 Consensus size: 48
50943134 AATGTATTAA
* * * *
50943144 TGCAAAACAGTAAAGAAAGATGCATTAAACCAATAGAACACATAATGT
1 TGCAAAACAGTAAAGAAAGATGCATTAAACAAACACAAAACATAATGT
* * * *
50943192 TGCAAAACATTAAATAAAGATGTATTTAACAAACACAAAACATAAT
1 TGCAAAACAGTAAAGAAAGATGCATTAAACAAACACAAAACATAAT
50943238 TAAAAAAATG
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 38 1.00
ACGTcount: A:0.54, C:0.14, G:0.11, T:0.21
Consensus pattern (48 bp):
TGCAAAACAGTAAAGAAAGATGCATTAAACAAACACAAAACATAATGT
Found at i:50944474 original size:184 final size:183
Alignment explanation
Indices: 50944111--50944474 Score: 433
Period size: 184 Copynumber: 2.0 Consensus size: 183
50944101 TAAACACCAA
* * *
50944111 CTAGGAATGTAGGTCTGCAGCTGTGTCATAGTTCATCAGCTAGGAACGTAGGTCCACGAGCTGTC
1 CTAGGAATGTAGGTCTGCAGCTATGTCATAGTTCATCAGCTAGGAACGTAGGTCCACGAGCTCTA
* * *
50944176 TCAGAGTTGCTAGCTTAACTCAGCTAACTCGAATAAATGGAGGTTGTAAGCATAACTCAGCTAAC
66 TCAGACTAGCGAGCTTAACTCAGCTAACTCGAATAAATGGAGGTTGTAAGCATAACTCAGCTAAC
* * ** * * *
50944241 CTTTAAACATTAGCTGGGAAAGTAAGTTTACGACCTGTGTTGTAGTTCATCAG
131 CTTTAAACATCAGCTAGGAAAGTAAGTCCACGACCTATGTCGAAGTTCATCAG
* * * * ** * *
50944294 CTAGGAATGTAGGTCTGTGAGCTATGTCATAGTTCATCAGTTGGGAACGTATGTCGTCGCGTTCT
1 CTAGGAATGTAGGTCTG-CAGCTATGTCATAGTTCATCAGCTAGGAACGTAGGTCCACGAGCTCT
* *
50944359 ATC-GAACTAGCGAGCTTAACTCAGCTAACTCGAATAAATGGAGGTTGTGAGCATAACTCATCTA
65 ATCAG-ACTAGCGAGCTTAACTCAGCTAACTCGAATAAATGGAGGTTGTAAGCATAACTCAGCTA
* * * ** * *
50944423 ACCTTTAAACATCAGTTATGAACGTTGGTCCCCGAGCTATGTCGAAGTTCAT
129 ACCTTTAAACATCAGCTAGGAAAGTAAGTCCACGACCTATGTCGAAGTTCAT
50944475 TACCTGGGAA
Statistics
Matches: 149, Mismatches: 30, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
183 18 0.12
184 131 0.88
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.29
Consensus pattern (183 bp):
CTAGGAATGTAGGTCTGCAGCTATGTCATAGTTCATCAGCTAGGAACGTAGGTCCACGAGCTCTA
TCAGACTAGCGAGCTTAACTCAGCTAACTCGAATAAATGGAGGTTGTAAGCATAACTCAGCTAAC
CTTTAAACATCAGCTAGGAAAGTAAGTCCACGACCTATGTCGAAGTTCATCAG
Found at i:50945596 original size:32 final size:30
Alignment explanation
Indices: 50945531--50945597 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
50945521 GGGGCAAGCT
**
50945531 GTGTGTCACACACGGCCTAGACACATGACC
1 GTGTGTCACACACGGCCTAGACACACAACC
* *
50945561 GTGTGTCACACATGGCCTAGACATACAACC
1 GTGTGTCACACACGGCCTAGACACACAACC
*
50945591 GCGTGTC
1 GTGTGTC
50945598 TACCCATGTG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.25, C:0.31, G:0.24, T:0.19
Consensus pattern (30 bp):
GTGTGTCACACACGGCCTAGACACACAACC
Found at i:50946542 original size:42 final size:42
Alignment explanation
Indices: 50946431--50946542 Score: 136
Period size: 43 Copynumber: 2.6 Consensus size: 42
50946421 TACCATACCA
* *
50946431 ATGCCATATCCCAGATATGGTCTTACTTGGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACATGAGATCTCATATCG
* * * *
50946473 ATACCAATAGCCTAGCTATGGTCTTACATGA-AGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACATGAGA-TCTCATATCG
*
50946516 ATGCCATATCCCATATATGGTCTTACA
1 ATGCCATATCCCAGATATGGTCTTACA
50946543 CATAATCTTA
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
42 23 0.40
43 34 0.60
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGAGATCTCATATCG
Found at i:50953498 original size:62 final size:62
Alignment explanation
Indices: 50953425--50953545 Score: 215
Period size: 62 Copynumber: 2.0 Consensus size: 62
50953415 AATCATTCTT
* *
50953425 ATATTCGCAAATATAACCATCAATCATATTTATATATATATTCTTCTTTGATGCTAATGCTC
1 ATATTCGCAAATATAACCATCAATCACATTTATATATATATTCATCTTTGATGCTAATGCTC
*
50953487 ATATTTGCAAATATAACCATCAATCACATTTATATATATATTCATCTTTGATGCTAATG
1 ATATTCGCAAATATAACCATCAATCACATTTATATATATATTCATCTTTGATGCTAATG
50953546 ATTCACTTCG
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 56 1.00
ACGTcount: A:0.36, C:0.17, G:0.07, T:0.41
Consensus pattern (62 bp):
ATATTCGCAAATATAACCATCAATCACATTTATATATATATTCATCTTTGATGCTAATGCTC
Found at i:50953659 original size:35 final size:35
Alignment explanation
Indices: 50953613--50953682 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
50953603 TGTATAGTAC
50953613 TTACTCAATGATGGTTTACTGCGAACATTCAATAT
1 TTACTCAATGATGGTTTACTGCGAACATTCAATAT
50953648 TTACTCAATGATGGTTTACTGCGAACATTCAATAT
1 TTACTCAATGATGGTTTACTGCGAACATTCAATAT
50953683 CGTAATCTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.37
Consensus pattern (35 bp):
TTACTCAATGATGGTTTACTGCGAACATTCAATAT
Found at i:50953881 original size:39 final size:39
Alignment explanation
Indices: 50953791--50953973 Score: 188
Period size: 39 Copynumber: 4.7 Consensus size: 39
50953781 ACCAGCTCGA
* * * * * *
50953791 AGCCTGTAGGACCTTAA-CCCGGACATATTTCCAACACGT
1 AGCCTGCA-GACCTTAAGTCCGGATATAATTCCAGCACAT
* * *
50953830 AACCTGCGGACCTTAAGTCCGGTTATAATTCCAGCACAT
1 AGCCTGCAGACCTTAAGTCCGGATATAATTCCAGCACAT
*
50953869 AGCTTGCAGACCTTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCAGACCTTAAGTCCGGATATAATTCCAGCACAT
** * *
50953908 AGCCTGTGGACCCTAAGTCCGGATATAATTCCAGCACGT
1 AGCCTGCAGACCTTAAGTCCGGATATAATTCCAGCACAT
* * * *
50953947 ACCCTGCAGACCCTAAATCCAGATATA
1 AGCCTGCAGACCTTAAGTCCGGATATA
50953974 CATCACTGAA
Statistics
Matches: 120, Mismatches: 23, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
38 8 0.07
39 112 0.93
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (39 bp):
AGCCTGCAGACCTTAAGTCCGGATATAATTCCAGCACAT
Found at i:50954610 original size:39 final size:39
Alignment explanation
Indices: 50954520--50954702 Score: 188
Period size: 39 Copynumber: 4.7 Consensus size: 39
50954510 ACCAGCTCGA
* * * * * *
50954520 AGCCTGTAGGACCTTAA-CCCGGACATATTTCCAACACGT
1 AGCCTGCA-GACCTTAAGTCCGGATATAATTCCAGCACAT
* * *
50954559 AACCTGCGGACCTTAAGTCCGGTTATAATTCCAGCACAT
1 AGCCTGCAGACCTTAAGTCCGGATATAATTCCAGCACAT
*
50954598 AGCTTGCAGACCTTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCAGACCTTAAGTCCGGATATAATTCCAGCACAT
** * *
50954637 AGCCTGTGGACCCTAAGTCCGGATATAATTCCAGCACGT
1 AGCCTGCAGACCTTAAGTCCGGATATAATTCCAGCACAT
* * * *
50954676 ACCCTGCAGACCCTAAATCCAGATATA
1 AGCCTGCAGACCTTAAGTCCGGATATA
50954703 CATCACTGAA
Statistics
Matches: 120, Mismatches: 23, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
38 8 0.07
39 112 0.93
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (39 bp):
AGCCTGCAGACCTTAAGTCCGGATATAATTCCAGCACAT
Found at i:50960315 original size:27 final size:29
Alignment explanation
Indices: 50960285--50960343 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 29
50960275 ATCGATGCCA
50960285 ACATATA-A-GACATGGTCTTACTCGCAC
1 ACATATACATGACATGGTCTTACTCGCAC
*
50960312 ACATATATCGATGCCATGGTCTTACTCGCAC
1 ACATATA-C-ATGACATGGTCTTACTCGCAC
50960343 A
1 A
50960344 TCACATATTG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
27 7 0.26
30 1 0.04
31 19 0.70
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
ACATATACATGACATGGTCTTACTCGCAC
Done.