Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 155 of 310
Found at i:50964063 original size:27 final size:27
Alignment explanation
Indices: 50964024--50964311 Score: 292
Period size: 27 Copynumber: 10.7 Consensus size: 27
50964014 CTAGATTGAT
* *
50964024 AAATGACTTTTTTGTCCTCATGAGGTA
1 AAATGACTATTTTGCCCTCATGAGGTA
* *
50964051 AAATGACAATTTTGCCCTTAT-ATGGTA
1 AAATGACTATTTTGCCCTCATGA-GGTA
*
50964078 AAATGACTATTTTGCCCTTATGAGGTA
1 AAATGACTATTTTGCCCTCATGAGGTA
** * *
50964105 AAATGGTTATTTTCCCCTAATGAGGTA
1 AAATGACTATTTTGCCCTCATGAGGTA
* *
50964132 AAATGACTATCTTGCCCTCATGAGGCA
1 AAATGACTATTTTGCCCTCATGAGGTA
* * * *
50964159 AAATTG-TTGTTTTTCCCTCTTGAGGTA
1 AAA-TGACTATTTTGCCCTCATGAGGTA
* * *
50964186 AAATGTCTATTTTTCCCTCATGAGGAA
1 AAATGACTATTTTGCCCTCATGAGGTA
* *
50964213 AAATGACTATTTTGCCCTTATAAGGTA
1 AAATGACTATTTTGCCCTCATGAGGTA
* * * *
50964240 AAATGACTGTTTTGCCTTTATGTGGTA
1 AAATGACTATTTTGCCCTCATGAGGTA
* *
50964267 AAATGATTGTTTTGCCCTCATGAGGTA
1 AAATGACTATTTTGCCCTCATGAGGTA
* *
50964294 AAATGATTGTTTTGCCCT
1 AAATGACTATTTTGCCCT
50964312 TATATGGTAA
Statistics
Matches: 219, Mismatches: 38, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
26 3 0.01
27 213 0.97
28 3 0.01
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (27 bp):
AAATGACTATTTTGCCCTCATGAGGTA
Found at i:50964162 original size:81 final size:80
Alignment explanation
Indices: 50964039--50964338 Score: 336
Period size: 81 Copynumber: 3.7 Consensus size: 80
50964029 ACTTTTTTGT
* *
50964039 CCTCATGAGGTAAAATGACAATTTTGCCCTTATATGGTAAAATGACTATTTTGCCCTTATGAGGT
1 CCTCATGAGGTAAAATGACTATTTTGCCCTTATA-GGTAAAATGACTGTTTTGCCCTTATGAGGT
50964104 AAAATGGTTATTTTCC
65 AAAATGGTTATTTTCC
* * * * * *
50964120 CCTAATGAGGTAAAATGACTATCTTGCCCTCATGAGGCAAAATTG-TTGTTTTTCCCTCT-TGAG
1 CCTCATGAGGTAAAATGACTATTTTGCCCTTAT-AGGTAAAA-TGACTGTTTTGCCCT-TATGAG
*
50964183 GTAAAAT-GTCTATTTTTC
63 GTAAAATGGT-TATTTTCC
* * *
50964201 CCTCATGAGGAAAAATGACTATTTTGCCCTTATAAGGTAAAATGACTGTTTTGCCTTTATGTGGT
1 CCTCATGAGGTAAAATGACTATTTTGCCCTTAT-AGGTAAAATGACTGTTTTGCCCTTATGAGGT
* * *
50964266 AAAATGATTGTTTTGC
65 AAAATGGTTATTTTCC
* * * * *
50964282 CCTCATGAGGTAAAATGATTGTTTTGCCCTTATATGGTAAGATGATTGTTTTTCCCT
1 CCTCATGAGGTAAAATGACTATTTTGCCCTTATA-GGTAAAATGACTGTTTTGCCCT
50964339 ATGTGATTTA
Statistics
Matches: 182, Mismatches: 29, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
80 6 0.03
81 171 0.94
82 5 0.03
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (80 bp):
CCTCATGAGGTAAAATGACTATTTTGCCCTTATAGGTAAAATGACTGTTTTGCCCTTATGAGGTA
AAATGGTTATTTTCC
Found at i:50972622 original size:27 final size:26
Alignment explanation
Indices: 50972592--50972742 Score: 140
Period size: 27 Copynumber: 5.6 Consensus size: 26
50972582 AAATTGTACA
*
50972592 GCACTAAGTGTGTGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTT
* * *
50972619 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCG-ATTGACTATGTT
* **
50972646 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTT
*
50972673 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-T-TGACTATGTT
* * * *
50972701 GCACTAAGTGTGCGATTTTATTACGTG
1 GCACTAAGTGTGCGA-TTGACTATGTT
50972728 GCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
50972743 GTTTATTATA
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
26 1 0.01
27 78 0.75
28 25 0.24
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTT
Found at i:50972732 original size:82 final size:81
Alignment explanation
Indices: 50972592--50972742 Score: 205
Period size: 82 Copynumber: 1.9 Consensus size: 81
50972582 AAATTGTACA
* * * *
50972592 GCACTAAGTGTGTGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
50972657 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** * *
50972673 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTTATTACG-TGGCACTAAGT
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGT
50972737 GTGCGA
64 GTGCGA
50972743 GTTTATTATA
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
81 17 0.28
82 43 0.72
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:50972747 original size:27 final size:27
Alignment explanation
Indices: 50972591--50972768 Score: 126
Period size: 27 Copynumber: 6.6 Consensus size: 27
50972581 TAAATTGTAC
* * *
50972591 AGCACTAAGTGTGTGA-TTCGACTATGT
1 AGCACTAAGTGTGCGAGTT-TATTATGT
* ** * *
50972618 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGTTTATTATGT
* * ** *
50972644 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAGTTTATTATGT
* * *
50972672 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGAGT-TTATTATGT
* *
50972700 AGCACTAAGTGTGCGATTTTATTACGT
1 AGCACTAAGTGTGCGAGTTTATTATGT
* *
50972727 GGCACTAAGTGTGCGAGTTTATTATAT
1 AGCACTAAGTGTGCGAGTTTATTATGT
*
50972754 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50972769 GGCTCAATAT
Statistics
Matches: 124, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
27 100 0.81
28 24 0.19
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTTATTATGT
Found at i:50974799 original size:27 final size:27
Alignment explanation
Indices: 50974763--50975040 Score: 240
Period size: 27 Copynumber: 10.7 Consensus size: 27
50974753 GCTAGTTGCT
*
50974763 AAATGATTGTTTTGCCCTCATGAGGTA
1 AAATGACTGTTTTGCCCTCATGAGGTA
*
50974790 AAATGATTGTTTTGCCCTTC-T-ATGGTA
1 AAATGACTGTTTTGCCC-TCATGA-GGTA
* * *
50974817 AAATAATTGTTTTGCCCTCATGAAGTA
1 AAATGACTGTTTTGCCCTCATGAGGTA
* *
50974844 AAATGACTATTTTTCCCTCATGAGGTA
1 AAATGACTGTTTTGCCCTCATGAGGTA
** * * *
50974871 AAATGGTTTTTTTGCCCTCTTGAGGTT
1 AAATGACTGTTTTGCCCTCATGAGGTA
* *
50974898 AAATGACTATTTTTCCCTCATGAGGTA
1 AAATGACTGTTTTGCCCTCATGAGGTA
* * *
50974925 AAATGACAGTTTTGCCCTTATGTGGTA
1 AAATGACTGTTTTGCCCTCATGAGGTA
50974952 AAATGAC----TT-CCCTCATGAGGTA
1 AAATGACTGTTTTGCCCTCATGAGGTA
50974974 AAATGA-----TTGCCCTCATGAGGTA
1 AAATGACTGTTTTGCCCTCATGAGGTA
* * *
50974996 AAATGACTGTTTTTCCTTTAT-ATGGTA
1 AAATGACTGTTTTGCCCTCATGA-GGTA
* *
50975023 AGATGACTATTTTGCCCT
1 AAATGACTGTTTTGCCCT
50975041 ATTTGATGTA
Statistics
Matches: 207, Mismatches: 33, Indels: 22
0.79 0.13 0.08
Matches are distributed among these distances:
21 2 0.01
22 36 0.17
23 2 0.01
26 4 0.02
27 160 0.77
28 3 0.01
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (27 bp):
AAATGACTGTTTTGCCCTCATGAGGTA
Found at i:50974871 original size:54 final size:54
Alignment explanation
Indices: 50974763--50975011 Score: 270
Period size: 54 Copynumber: 4.8 Consensus size: 54
50974753 GCTAGTTGCT
* * *
50974763 AAATGATTGTTTTGCCCTCATGAGGTAAAATGATTGTTTTGCCCTTC-T-ATGGTA
1 AAATGATTGTTTTGCCCTCATGAGGTAAAATGACTATTTTTCCC-TCATGA-GGTA
* *
50974817 AAATAATTGTTTTGCCCTCATGAAGTAAAATGACTATTTTTCCCTCATGAGGTA
1 AAATGATTGTTTTGCCCTCATGAGGTAAAATGACTATTTTTCCCTCATGAGGTA
* * * *
50974871 AAATGGTTTTTTTGCCCTCTTGAGGTTAAATGACTATTTTTCCCTCATGAGGTA
1 AAATGATTGTTTTGCCCTCATGAGGTAAAATGACTATTTTTCCCTCATGAGGTA
** * *
50974925 AAATGACAGTTTTGCCCTTATGTGGTAAAATGAC-----TTCCCTCATGAGGTA
1 AAATGATTGTTTTGCCCTCATGAGGTAAAATGACTATTTTTCCCTCATGAGGTA
*
50974974 AAATGA-----TTGCCCTCATGAGGTAAAATGACTGTTTTTCC
1 AAATGATTGTTTTGCCCTCATGAGGTAAAATGACTATTTTTCC
50975012 TTTATATGGT
Statistics
Matches: 167, Mismatches: 21, Indels: 19
0.81 0.10 0.09
Matches are distributed among these distances:
44 21 0.13
49 25 0.15
53 2 0.01
54 118 0.71
55 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (54 bp):
AAATGATTGTTTTGCCCTCATGAGGTAAAATGACTATTTTTCCCTCATGAGGTA
Found at i:50974973 original size:22 final size:23
Alignment explanation
Indices: 50974912--50975003 Score: 116
Period size: 22 Copynumber: 3.9 Consensus size: 23
50974902 GACTATTTTT
50974912 CCCTCATGAGGTAAAATGACAGTTTTG
1 CCCTCATGAGGTAAAATGAC----TTG
* *
50974939 CCCTTATGTGGTAAAATGACTT-
1 CCCTCATGAGGTAAAATGACTTG
50974961 CCCTCATGAGGTAAAATGA-TTG
1 CCCTCATGAGGTAAAATGACTTG
50974983 CCCTCATGAGGTAAAATGACT
1 CCCTCATGAGGTAAAATGACT
50975004 GTTTTTCCTT
Statistics
Matches: 59, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
21 2 0.03
22 36 0.61
23 3 0.05
27 18 0.31
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (23 bp):
CCCTCATGAGGTAAAATGACTTG
Found at i:50984503 original size:39 final size:40
Alignment explanation
Indices: 50984402--50984625 Score: 246
Period size: 40 Copynumber: 5.7 Consensus size: 40
50984392 TTGAATGATG
* *
50984402 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
50984441 ATCCGGACTAAGAT-CCGAAGGCATTTGTGTGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
50984482 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
50984521 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
50984560 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
50984599 AACCGGGCTATGTCCCGAAGGCGTTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
50984626 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 16, Indels: 14
0.84 0.08 0.07
Matches are distributed among these distances:
39 74 0.46
40 75 0.47
41 11 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:50984579 original size:79 final size:80
Alignment explanation
Indices: 50984402--50984625 Score: 260
Period size: 79 Copynumber: 2.8 Consensus size: 80
50984392 TTGAATGATG
* * * *
50984402 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATATCCGGGCTAAGACCCGAAGGCAT
* *
50984465 TTGTGTGAGATACTAAT
64 TTGTGCGAGATACTAAA
50984482 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA-TCCGGGCTAAGACCCGAAGGCATT
*
50984544 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* * * * * * *
50984560 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCGTTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATATCCGGGCTAAGACCCGAAGGCATTT
50984625 G
66 G
50984626 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
78 35 0.28
79 55 0.44
80 34 0.27
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATATCCGGGCTAAGACCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:50984647 original size:79 final size:79
Alignment explanation
Indices: 50984455--50984658 Score: 209
Period size: 79 Copynumber: 2.6 Consensus size: 79
50984445 GGACTAAGAT
*** * * * *
50984455 CCGAAGGCATTTGTGTGAGATACTAATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTA
*
50984519 ATTCCGGGCTAAGC
66 ATACCGGGCTAAGC
** *
50984533 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTA
*
50984597 ATAACCGGGCTATGTC
66 AT-ACCGGGCTAAG-C
* * * *
50984613 CCGAAGGCGTTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGG
50984659 TACGTAATTT
Statistics
Matches: 108, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
78 36 0.33
79 48 0.44
80 24 0.22
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTA
ATACCGGGCTAAGC
Found at i:50990599 original size:27 final size:27
Alignment explanation
Indices: 50990566--50990621 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
50990556 AGATGGTAGA
50990566 GAAAGAAAGATTTCAGAACCCAAGACC
1 GAAAGAAAGATTTCAGAACCCAAGACC
50990593 GAAAGAAAGATTTCAGAACCCAAGACC
1 GAAAGAAAGATTTCAGAACCCAAGACC
50990620 GA
1 GA
50990622 GTGGCACAGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.48, C:0.21, G:0.20, T:0.11
Consensus pattern (27 bp):
GAAAGAAAGATTTCAGAACCCAAGACC
Found at i:50992562 original size:40 final size:40
Alignment explanation
Indices: 50992484--50992706 Score: 247
Period size: 40 Copynumber: 5.5 Consensus size: 40
50992474 ACCCAAGTAT
* * *
50992484 CTTCGAGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
50992523 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
50992563 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
50992603 CTTC-GCACTTAGCTCGGGTATAG-CAACTACTCACACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
50992645 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
50992685 CCTCAGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
50992707 CATCCGAATA
Statistics
Matches: 155, Mismatches: 21, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
38 1 0.01
39 30 0.19
40 91 0.59
41 1 0.01
42 13 0.08
43 19 0.12
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:51000792 original size:40 final size:40
Alignment explanation
Indices: 51000714--51000937 Score: 263
Period size: 40 Copynumber: 5.5 Consensus size: 40
51000704 ACCCAAGTAT
* *
51000714 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
51000753 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
51000793 CTTCGGGACTTAGACCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
51000833 CTTCGGGACTTAGCCCGGGTATAGCAATTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAG---TCACTAGCACAAATGC
* * *
51000876 CTTCGAGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* **
51000916 CCTCGATACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
51000938 CATCCGAATA
Statistics
Matches: 161, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
39 11 0.07
40 113 0.70
41 1 0.01
43 36 0.22
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:51000910 original size:83 final size:79
Alignment explanation
Indices: 51000714--51000937 Score: 268
Period size: 83 Copynumber: 2.8 Consensus size: 79
51000704 ACCCAAGTAT
* * * *
51000714 CTTCGGGATTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTC
1 CTTCGGGACTTAGCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC
**
51000779 ACTAGCATGAATGC
66 ACTAGCACAAATGC
* *
51000793 CTTCGGGACTTAGACCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGC
1 CTTCGGGACTTAG-CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG-
* *
51000858 AATTACTCGCACAAATGC
64 --TCACTAGCACAAATGC
* * * **
51000876 CTTCGAGACTTAGCCCGGATATAGTAACTTGCACAAATGCCCTCGATACTTAGCCCGGATAT
1 CTTCGGGACTTAG-CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
51000938 CATCCGAATA
Statistics
Matches: 123, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
79 12 0.10
80 45 0.37
83 66 0.54
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (79 bp):
CTTCGGGACTTAGCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC
ACTAGCACAAATGC
Found at i:51008976 original size:49 final size:49
Alignment explanation
Indices: 51008785--51008976 Score: 208
Period size: 50 Copynumber: 3.9 Consensus size: 49
51008775 ATTGTGAATA
* * * *
51008785 CACGTGTGCAGTACTAAATGCAGGCTACTATGCGTACTCA-A-TGACTTCGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTA-TCAGATTG--TT-GGT
* * * *
51008836 CACGTGTGTAGTAGTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTATCAGATTGT-TGGT
* *
51008886 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTATCAGATTGTTGGT
* * *
51008935 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTATCAGAT
51008977 AGCTTCGGCT
Statistics
Matches: 121, Mismatches: 17, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
49 40 0.33
50 48 0.40
51 32 0.26
52 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.29
Consensus pattern (49 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTATCAGATTGTTGGT
Found at i:51015484 original size:50 final size:49
Alignment explanation
Indices: 51015409--51015634 Score: 190
Period size: 50 Copynumber: 4.5 Consensus size: 49
51015399 TGAATACACG
* *
51015409 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTT-AGTCGCA
* ** * *
51015459 TGTGTAGTACTAAGTGCAGGCTACTATGCATACTCAATGACCTCG--A-TCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-C-A-GA-CT-GTTAGTCGCA
* * * * *
51015510 TGTGTAGTACTAAGTGCAGGCTACTTCGTGTATCAGA-TGGTCAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GTTA-GTCGCA
* * * * *
51015560 TGTGTAGTTCTAAGTTCAGGCTACTACGTGTACCGGATTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAGTCGCA
*
51015609 TGTGTAGTACTAAGTGTAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
51015635 TGCGTATCAG
Statistics
Matches: 141, Mismatches: 25, Indels: 21
0.75 0.13 0.11
Matches are distributed among these distances:
46 2 0.01
48 3 0.02
49 28 0.20
50 70 0.50
51 32 0.23
52 2 0.01
53 1 0.01
54 2 0.01
55 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAGTCGCA
Found at i:51017760 original size:13 final size:13
Alignment explanation
Indices: 51017744--51017769 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51017734 ATATGTTTCA
51017744 TGATTGTTTTGGT
1 TGATTGTTTTGGT
51017757 TGATTGTTTTGGT
1 TGATTGTTTTGGT
51017770 ATGGATTCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.31, T:0.62
Consensus pattern (13 bp):
TGATTGTTTTGGT
Found at i:51021927 original size:48 final size:48
Alignment explanation
Indices: 51021867--51021958 Score: 157
Period size: 48 Copynumber: 1.9 Consensus size: 48
51021857 CACCACGGTT
* *
51021867 ATACGTGTAACGTGGTGCTAAGTGGATATACCATGATTACACATATTG
1 ATACGTGTAACGTGGTGCTAAGTGAATATACCATGATTAAACATATTG
*
51021915 ATACGTGTAACGTGGTGCTAAGTGAATATACCATGGTTAAACAT
1 ATACGTGTAACGTGGTGCTAAGTGAATATACCATGATTAAACAT
51021959 GTAACATGGT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (48 bp):
ATACGTGTAACGTGGTGCTAAGTGAATATACCATGATTAAACATATTG
Found at i:51021971 original size:38 final size:37
Alignment explanation
Indices: 51021920--51022061 Score: 131
Period size: 38 Copynumber: 3.5 Consensus size: 37
51021910 TATTGATACG
51021920 TGTAACGTGGTGCTAAGTGAATATACCATGGTTAAACA
1 TGTAACGTGGTGCTAAGTG-ATATACCATGGTTAAACA
* * * *
51021958 TGTAACATGGTGCTAAGTTGATATGCCACGGTTACATATA
1 TGTAACGTGGTGCTAAG-TGATATACCATGGTTA-A-ACA
*
51021998 TTGATTCATTAACGCGGTGCTAAGTGGATATACCATGGTTAAACA
1 -TG------TAACGTGGTGCTAAGT-GATATACCATGGTTAAACA
51022043 TGTAACGTGGTGCTAAGTG
1 TGTAACGTGGTGCTAAGTG
51022062 GACATGTCAC
Statistics
Matches: 83, Mismatches: 10, Indels: 23
0.72 0.09 0.20
Matches are distributed among these distances:
37 1 0.01
38 43 0.52
39 3 0.04
40 2 0.02
41 2 0.02
44 2 0.02
45 2 0.02
46 2 0.02
47 26 0.31
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (37 bp):
TGTAACGTGGTGCTAAGTGATATACCATGGTTAAACA
Found at i:51022043 original size:85 final size:86
Alignment explanation
Indices: 51021837--51022081 Score: 330
Period size: 86 Copynumber: 2.9 Consensus size: 86
51021827 GGAATGAAAA
* * * * * *
51021837 AACGTGGTGCTAAGTGGATACACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATACCATG
1 AACGTGGTGCTAAGTGGATATACCATGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACG
* *
51021902 ATTACACATATTGATACGTGT
66 GTTACACATATTGATACATGT
* * *
51021923 AACGTGGTGCTAAGTGAATATACCATGGTTAAACATGTAACATGGTGCTAAGTTGATATGCCACG
1 AACGTGGTGCTAAGTGGATATACCATGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACG
* *
51021988 GTTACATATATTGATTCAT-T
66 GTTACACATATTGATACATGT
* * *
51022008 AACGCGGTGCTAAGTGGATATACCATGGTTAAACATGTAACGTGGTGCTAAGTGGACATGTCACG
1 AACGTGGTGCTAAGTGGATATACCATGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACG
*
51022073 GTTATACAT
66 GTTACACAT
51022082 GTTAATTTGA
Statistics
Matches: 138, Mismatches: 21, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
85 67 0.49
86 71 0.51
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (86 bp):
AACGTGGTGCTAAGTGGATATACCATGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACG
GTTACACATATTGATACATGT
Found at i:51022076 original size:38 final size:38
Alignment explanation
Indices: 51022007--51022083 Score: 100
Period size: 38 Copynumber: 2.0 Consensus size: 38
51021997 ATTGATTCAT
* *
51022007 TAACGCGGTGCTAAGTGGATATACCATGGTTAAACATG
1 TAACGCGGTGCTAAGTGGACATACCACGGTTAAACATG
* ** *
51022045 TAACGTGGTGCTAAGTGGACATGTCACGGTTATACATG
1 TAACGCGGTGCTAAGTGGACATACCACGGTTAAACATG
51022083 T
1 T
51022084 TAATTTGAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (38 bp):
TAACGCGGTGCTAAGTGGACATACCACGGTTAAACATG
Found at i:51025334 original size:15 final size:15
Alignment explanation
Indices: 51025314--51025353 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
51025304 GCTGTAAATG
51025314 GGATTTCCTTATCAT
1 GGATTTCCTTATCAT
* *
51025329 GGATTTCTTTATCTT
1 GGATTTCCTTATCAT
*
51025344 GGATATCCTT
1 GGATTTCCTT
51025354 TTTCTGGGCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.17, C:0.17, G:0.15, T:0.50
Consensus pattern (15 bp):
GGATTTCCTTATCAT
Found at i:51028127 original size:38 final size:38
Alignment explanation
Indices: 51028071--51028269 Score: 209
Period size: 38 Copynumber: 5.0 Consensus size: 38
51028061 AGAATGAAAA
* *
51028071 AACGTTGTGCTAAGTGGATATACCACGGTTATACGTGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
* * *
51028109 AACGTGGTGCTAACTGGATATACCATGGTTAAACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
* *
51028147 AACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATT
1 AACGTGGTGCTAAGTGGATATACCACGGTT--ATACA-TG------T
* * *
51028194 AACGTTGTGCTAAGTGGATATCCCACGGTTAAACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
* *
51028232 AACGTGGTGCTAAGTGGATATGCCACAGTTATACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
51028270 TAATTTGAAA
Statistics
Matches: 134, Mismatches: 18, Indels: 18
0.79 0.11 0.11
Matches are distributed among these distances:
38 95 0.71
40 3 0.02
41 2 0.01
44 2 0.01
45 3 0.02
47 29 0.22
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.31
Consensus pattern (38 bp):
AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
Found at i:51029461 original size:19 final size:19
Alignment explanation
Indices: 51029437--51029479 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
51029427 ATTGGTGATG
51029437 TGCATAGGCTTGTTTCCCA
1 TGCATAGGCTTGTTTCCCA
51029456 TGCATAGGCTTGTTTCCCA
1 TGCATAGGCTTGTTTCCCA
51029475 TGCAT
1 TGCAT
51029480 GGTTGATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.16, C:0.26, G:0.21, T:0.37
Consensus pattern (19 bp):
TGCATAGGCTTGTTTCCCA
Found at i:51034686 original size:16 final size:16
Alignment explanation
Indices: 51034667--51034698 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
51034657 CAATTTTTAT
*
51034667 AAAATTTTTGTTTTTG
1 AAAATCTTTGTTTTTG
51034683 AAAATCTTTGTTTTTG
1 AAAATCTTTGTTTTTG
51034699 TAAACCCATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.03, G:0.12, T:0.59
Consensus pattern (16 bp):
AAAATCTTTGTTTTTG
Found at i:51035743 original size:27 final size:28
Alignment explanation
Indices: 51035702--51035770 Score: 74
Period size: 27 Copynumber: 2.5 Consensus size: 28
51035692 GATACAGATC
51035702 GTGGCAGA-CCGACCAAAAT-AGAT-ATAT
1 GTGGCAGAGCC-ACCAAAATCAGATAAT-T
*
51035729 GTGGCAGAGCCACC-AGATCAGATAATT
1 GTGGCAGAGCCACCAAAATCAGATAATT
*
51035756 GTGGCATAGCCACCA
1 GTGGCAGAGCCACCA
51035771 GGACGCTTCC
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
26 3 0.08
27 29 0.81
28 4 0.11
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (28 bp):
GTGGCAGAGCCACCAAAATCAGATAATT
Found at i:51035939 original size:28 final size:26
Alignment explanation
Indices: 51035877--51035939 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
51035867 AAAGTACCCC
** * *
51035877 TAGGGGTATAATGGTAATTTTGCACC
1 TAGGGGTATAACAGTAATTTTCCACA
51035903 TAGGGGTATAACAGTAATTTTCCATACA
1 TAGGGGTATAACAGTAATTTTCC--ACA
51035931 TAGGGGTAT
1 TAGGGGTAT
51035940 TCAAGTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 20 0.65
28 11 0.35
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.33
Consensus pattern (26 bp):
TAGGGGTATAACAGTAATTTTCCACA
Found at i:51052567 original size:27 final size:26
Alignment explanation
Indices: 51052533--51052666 Score: 142
Period size: 27 Copynumber: 5.0 Consensus size: 26
51052523 GCATAGCTGT
** *
51052533 CAGAACAGATATTGTGATAGAGTCAC
1 CAGAACAGATATTGTGGCAGAGCCAC
*
51052559 CAGATACAGATACTGTGGCAGAGCCAC
1 CAGA-ACAGATATTGTGGCAGAGCCAC
* *
51052586 CAGAACAAATATTTGTGGCATAGCCAC
1 CAGAACAGATA-TTGTGGCAGAGCCAC
**
51052613 CAGAACAGATATTTGTGGCATCGCCAC
1 CAGAACAGATA-TTGTGGCAGAGCCAC
* *
51052640 CAGAAACAGATAATGTGGCAAAGCCAC
1 CAG-AACAGATATTGTGGCAGAGCCAC
51052667 TTAACAGAAT
Statistics
Matches: 93, Mismatches: 12, Indels: 5
0.85 0.11 0.05
Matches are distributed among these distances:
26 10 0.11
27 75 0.81
28 8 0.09
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
CAGAACAGATATTGTGGCAGAGCCAC
Found at i:51052853 original size:22 final size:21
Alignment explanation
Indices: 51052825--51052889 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 21
51052815 GCAAATACGT
51052825 TTGGCACACAACCATAATCAGG
1 TTGGCACA-AACCATAATCAGG
* *
51052847 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACA-AACCATAAT-CAGG
51052869 TTGGCACAAAGCCATAATCAG
1 TTGGCACAAA-CCATAATCAG
51052890 AATAATTGAC
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
21 3 0.09
22 30 0.86
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (21 bp):
TTGGCACAAACCATAATCAGG
Found at i:51053307 original size:27 final size:27
Alignment explanation
Indices: 51053277--51053453 Score: 219
Period size: 27 Copynumber: 6.6 Consensus size: 27
51053267 GGGGCAAAAT
* * * * *
51053277 GGTAATTTTGCCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
51053304 GGTAATCCTACCCTACAGGGGCATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
51053331 GATATTTCTACCCTACAAGGGTAATTC
1 GGTAATTCTACCCTACAGGGGTATTTC
51053358 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
51053385 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
51053412 GATAATTTTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
51053439 GGTAATTCTAACCTA
1 GGTAATTCTACCCTA
51053454 AATGTAACAC
Statistics
Matches: 127, Mismatches: 23, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 127 1.00
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:51054129 original size:6 final size:6
Alignment explanation
Indices: 51054099--51054297 Score: 151
Period size: 6 Copynumber: 32.3 Consensus size: 6
51054089 AAGAAACATT
* * *
51054099 ATCAGA A-CTAGA ATCAAA ATGAGA ATTAGA ATCAGA ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * *
51054147 ATCAG- GTGACAGA ATCAAA ATTAGA ATCAGA ATCAGA ATTCGGTA AT-AGA
1 ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA A-TCAG-A ATCAGA
* *
51054197 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAGA ATCAGA ACCAGA ATCAGA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
*
51054246 ATTAGGTA A-CAGA ATCAGA ATCA-A TATCAGGTA A-CAGA ATCAGA ATCAGA
1 ATCA-G-A ATCAGA ATCAGA ATCAGA -ATCA-G-A ATCAGA ATCAGA ATCAGA
51054296 AT
1 AT
51054298 TTCAATGCAA
Statistics
Matches: 155, Mismatches: 19, Indels: 38
0.73 0.09 0.18
Matches are distributed among these distances:
5 12 0.08
6 120 0.77
7 15 0.10
8 7 0.05
9 1 0.01
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:51054162 original size:25 final size:24
Alignment explanation
Indices: 51054099--51054297 Score: 151
Period size: 25 Copynumber: 8.1 Consensus size: 24
51054089 AAGAAACATT
* *
51054099 ATCAGAA-CTAGAATCAAAATGAGA
1 ATCAGAATC-AGAATCAGAATCAGA
*
51054123 ATTAGAATCAGAATCAGAATCAGA
1 ATCAGAATCAGAATCAGAATCAGA
* * *
51054147 ATCAG-GTGACAGAATCAAAATTAGA
1 ATCAGAAT--CAGAATCAGAATCAGA
*
51054172 ATCAGAATCAGAATTCGGTAAT-AGA
1 ATCAGAATCAGAA-TCAG-AATCAGA
*
51054197 ATCAGAATCAGTATCAGGTAA-CAGA
1 ATCAGAATCAGAATCA-G-AATCAGA
*
51054222 ATCAGAATCAGAACCAGAATCAGA
1 ATCAGAATCAGAATCAGAATCAGA
*
51054246 ATTAGGTAA-CAGAATCAGAATCA-A
1 ATCA-G-AATCAGAATCAGAATCAGA
51054270 TATCAGGTAA-CAGAATCAGAATCAGA
1 -ATCA-G-AATCAGAATCAGAATCAGA
51054296 AT
1 AT
51054298 TTCAATGCAA
Statistics
Matches: 145, Mismatches: 17, Indels: 25
0.78 0.09 0.13
Matches are distributed among these distances:
23 3 0.02
24 39 0.27
25 96 0.66
26 7 0.05
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (24 bp):
ATCAGAATCAGAATCAGAATCAGA
Found at i:51054173 original size:31 final size:30
Alignment explanation
Indices: 51054126--51054297 Score: 154
Period size: 31 Copynumber: 5.6 Consensus size: 30
51054116 AATGAGAATT
51054126 AGAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGT-AC
* * * *
51054157 AGAATCAAAATTAGAATCAGAATCAGAATTC
1 AGAATCAGAATCAGAATCAGAATCAG-GTAC
* *
51054188 GGTAAT-AGAATCAGAATCAGTATCAGGTAAC
1 AG-AATCAGAATCAGAATCAGAATCAGGT-AC
* *
51054219 AGAATCAGAATCAGAACCAGAATCAGAATTA-
1 AGAATCAGAATCAGAATCAGAATCAG--GTAC
*
51054250 GGTAA-CAGAATCAGAATCA-ATATCAGGTAAC
1 AG-AATCAGAATCAGAATCAGA-ATCAGGT-AC
51054281 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
51054298 TTCAATGCAA
Statistics
Matches: 112, Mismatches: 18, Indels: 22
0.74 0.12 0.14
Matches are distributed among these distances:
29 1 0.01
30 8 0.07
31 95 0.85
32 7 0.06
33 1 0.01
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.19
Consensus pattern (30 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAC
Found at i:51054213 original size:37 final size:37
Alignment explanation
Indices: 51054120--51054297 Score: 131
Period size: 37 Copynumber: 4.8 Consensus size: 37
51054110 AATCAAAATG
* *
51054120 AGAATTAGAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGAATCAGGTAAC
* * *
51054157 AGAATCAAAATTAGAATCAGAATCAGAATTC-GGTAAT
1 AGAATCAGAATCAGAATCAGAATCAGAA-TCAGGTAAC
*
51054194 AGAATCAGAATCAGTATCAGGTAA-CAGAATCA-G-AATC
1 AGAATCAGAATCAGAATCA-G-AATCAGAATCAGGTAA-C
* *
51054231 AGAACCAGAATCAGAATTAGGTAA-CAGAATCA-G-AATC
1 AGAATCAGAATCAGAATCA-G-AATCAGAATCAGGTAA-C
51054268 A-ATATCAGGTAA-CAGAATCAGAATCAGAAT
1 AGA-ATCA-G-AATCAGAATCAGAATCAGAAT
51054298 TTCAATGCAA
Statistics
Matches: 118, Mismatches: 14, Indels: 18
0.79 0.09 0.12
Matches are distributed among these distances:
36 5 0.04
37 93 0.79
38 16 0.14
39 4 0.03
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.20
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:51054263 original size:62 final size:62
Alignment explanation
Indices: 51054131--51054296 Score: 260
Period size: 62 Copynumber: 2.7 Consensus size: 62
51054121 GAATTAGAAT
* * * * * *
51054131 CAGAATCAGAATCAGAATCAGGTGACAGAATCAAAATTAGAATCAGAATCAGAATTCGGTAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAA
*
51054193 TAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAA
*
51054255 CAGAATCAGAATCAATATCAGGTAACAGAATCAGAATCAGAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAA
51054297 TTTCAATGCA
Statistics
Matches: 95, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 95 1.00
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.19
Consensus pattern (62 bp):
CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAA
Found at i:51054494 original size:31 final size:32
Alignment explanation
Indices: 51054438--51054498 Score: 88
Period size: 31 Copynumber: 1.9 Consensus size: 32
51054428 CGAAGTCACC
* *
51054438 AGATATAGATATTGTGGCTAGGCCACCAGAAT
1 AGATATAGATATTGTGGCGAAGCCACCAGAAT
*
51054470 AGATATATATA-TGTGGCGAAGCCACCAGA
1 AGATATAGATATTGTGGCGAAGCCACCAGA
51054499 TTGCAGCGAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 16 0.62
32 10 0.38
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (32 bp):
AGATATAGATATTGTGGCGAAGCCACCAGAAT
Found at i:51054562 original size:27 final size:26
Alignment explanation
Indices: 51054514--51054565 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
51054504 GCGAGGTTGC
*
51054514 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
51054540 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
51054566 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:51054840 original size:27 final size:27
Alignment explanation
Indices: 51054810--51055034 Score: 199
Period size: 27 Copynumber: 8.3 Consensus size: 27
51054800 GGGGTAAAAT
* *
51054810 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
51054837 GGTAATTCTACCTTAC-AGGAGTATTTC
1 GGTAATTTTACCCTACAAGG-GTATTTC
* * *
51054864 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
**
51054891 GGT-ATTTCTACCAAACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* *
51054918 GGTAATTATACCCTAC-AGGAGTATTTT
1 GGTAATTTTACCCTACAAGG-GTATTTC
* * * *
51054945 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
51054972 GGT-ATTTCTACCCTACAGGGGTGTTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* *
51054999 GGT-ATTTCTACCCTATAGGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
51055026 GGTAATTTT
1 GGTAATTTT
51055035 GTAAATTGAG
Statistics
Matches: 163, Mismatches: 27, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
26 12 0.07
27 140 0.86
28 11 0.07
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:51054870 original size:54 final size:54
Alignment explanation
Indices: 51054810--51055034 Score: 247
Period size: 54 Copynumber: 4.2 Consensus size: 54
51054800 GGGGTAAAAT
* * * *
51054810 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCTTACAGGAGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * * * ** *
51054864 AGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCAAACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* ** *
51054918 GGTAATTATACCCTAC-AGGAGTATTTTAGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGG-GTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * * *
51054972 GGT-ATTTCTACCCTACAGGGGTGTTTCGGTATTTCTACCCTATAGGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
51055026 GGTAATTTT
1 GGTAATTTT
51055035 GTAAATTGAG
Statistics
Matches: 141, Mismatches: 26, Indels: 8
0.81 0.15 0.05
Matches are distributed among these distances:
53 5 0.04
54 130 0.92
55 6 0.04
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.36
Consensus pattern (54 bp):
GGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
Found at i:51054935 original size:81 final size:81
Alignment explanation
Indices: 51054824--51055032 Score: 301
Period size: 81 Copynumber: 2.6 Consensus size: 81
51054814 ATTTTACCCC
* *
51054824 ACAAGGGTATCTCGGTAATTCTACCTTACAGGAGTATTTCAGTAATTCTACCCTACAGGGGTATT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAGGAGTATTTCAGTAATTCTACCCTACAGGGGTATT
51054889 TCGGTATTTCTACCAA
66 TCGGTATTTCTACCAA
* * *
51054905 ACAAGGGTATTTCGGTAATTATACCCTACAGGAGTATTTTAGTAATTCTACCCTATAGGGGTATT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAGGAGTATTTCAGTAATTCTACCCTACAGGGGTATT
**
51054970 TCGGTATTTCTACCCT
66 TCGGTATTTCTACCAA
* * * * * *
51054986 ACAGGGGTGTTTCGGTATTTCTACCCTATAGGGGTATTTCGGTAATT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAGGAGTATTTCAGTAATT
51055033 TTGTAAATTG
Statistics
Matches: 113, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 113 1.00
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.36
Consensus pattern (81 bp):
ACAAGGGTATTTCGGTAATTCTACCCTACAGGAGTATTTCAGTAATTCTACCCTACAGGGGTATT
TCGGTATTTCTACCAA
Found at i:51055112 original size:27 final size:27
Alignment explanation
Indices: 51055082--51055141 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
51055072 GGTACTTTGG
*
51055082 TAATTTTACAAGTCGATGGTATTTCAA
1 TAATTTTACAAGTCGAGGGTATTTCAA
* *
51055109 TAATTTTACAGGTTGAGGGTATTTCAA
1 TAATTTTACAAGTCGAGGGTATTTCAA
51055136 TAATTT
1 TAATTT
51055142 CGCAAATCAG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.32, C:0.08, G:0.17, T:0.43
Consensus pattern (27 bp):
TAATTTTACAAGTCGAGGGTATTTCAA
Found at i:51055445 original size:27 final size:27
Alignment explanation
Indices: 51055144--51055438 Score: 358
Period size: 27 Copynumber: 10.9 Consensus size: 27
51055134 AATAATTTCG
*
51055144 CAAATCAGGGGTATTTTGGTAATTTT-
1 CAAACCAGGGGTATTTTGGTAATTTTA
* * *
51055170 CAAAACTATGGGTATTTTGATAATTTTA
1 C-AAACCAGGGGTATTTTGGTAATTTTA
*
51055198 CAAACCAGGGGTATTTTGGTGATTTTA
1 CAAACCAGGGGTATTTTGGTAATTTTA
* * *
51055225 TAAACCAAGGGTATTTTAGTAATTTTA
1 CAAACCAGGGGTATTTTGGTAATTTTA
* *
51055252 CAAACCAGGGGCATTTTGGTAATTTTG
1 CAAACCAGGGGTATTTTGGTAATTTTA
* * **
51055279 TAAACCAAGGGTATTTTTTTAATTTTA
1 CAAACCAGGGGTATTTTGGTAATTTTA
*
51055306 CAAACCAGGGGTATTTTGGTGATTTTA
1 CAAACCAGGGGTATTTTGGTAATTTTA
* * **
51055333 TAAACCAAGGGTATTTTAATAATTTTA
1 CAAACCAGGGGTATTTTGGTAATTTTA
*
51055360 CAAACCAGGGGTATTTTGGTGATTTTA
1 CAAACCAGGGGTATTTTGGTAATTTTA
* * **
51055387 TAAACCAAGGGTATTTTAATAATTTTA
1 CAAACCAGGGGTATTTTGGTAATTTTA
51055414 CAAACCAGGGGTATTTTGGTAATTT
1 CAAACCAGGGGTATTTTGGTAATTT
51055439 GGTAAACTAA
Statistics
Matches: 220, Mismatches: 47, Indels: 3
0.81 0.17 0.01
Matches are distributed among these distances:
26 1 0.00
27 218 0.99
28 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
CAAACCAGGGGTATTTTGGTAATTTTA
Found at i:51055445 original size:54 final size:54
Alignment explanation
Indices: 51055124--51055438 Score: 479
Period size: 54 Copynumber: 5.8 Consensus size: 54
51055114 TTACAGGTTG
* ** * *
51055124 AGGGTATTTCAATAATTTCGCAAATCAGGGGTATTTTGGTAATTTTCA-AAACTA
1 AGGGTATTTTAATAATTTTACAAACCAGGGGTATTTTGGTAATTTT-ATAAACCA
* * *
51055178 TGGGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCA
1 AGGGTATTTTAATAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
* * *
51055232 AGGGTATTTTAGTAATTTTACAAACCAGGGGCATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTAATAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
** *
51055286 AGGGTATTTTTTTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCA
1 AGGGTATTTTAATAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
*
51055340 AGGGTATTTTAATAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCA
1 AGGGTATTTTAATAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
51055394 AGGGTATTTTAATAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 AGGGTATTTTAATAATTTTACAAACCAGGGGTATTTTGGTAATTT
51055439 GGTAAACTAA
Statistics
Matches: 238, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
53 1 0.00
54 237 1.00
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (54 bp):
AGGGTATTTTAATAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
Found at i:51056339 original size:27 final size:27
Alignment explanation
Indices: 51056308--51056409 Score: 150
Period size: 27 Copynumber: 3.8 Consensus size: 27
51056298 GGTGTTACAC
51056308 TACAAGGGTATTTCAGTAATTCTACCT
1 TACAAGGGTATTTCAGTAATTCTACCT
*
51056335 TACAAGGGTATTTCGGTAATTCTACCT
1 TACAAGGGTATTTCAGTAATTCTACCT
* * *
51056362 TATAGGGGTATTTCAGTAATTCTACCC
1 TACAAGGGTATTTCAGTAATTCTACCT
* *
51056389 TATAAGGGTATTTTAGTAATT
1 TACAAGGGTATTTCAGTAATT
51056410 TTGTAAATCG
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39
Consensus pattern (27 bp):
TACAAGGGTATTTCAGTAATTCTACCT
Found at i:51056423 original size:27 final size:26
Alignment explanation
Indices: 51056393--51056465 Score: 65
Period size: 27 Copynumber: 2.7 Consensus size: 26
51056383 CTACCCTATA
*
51056393 AGGGTATTTTAGTAATTTTGTAAATCG
1 AGGGTAATTT-GTAATTTTGTAAATCG
** *
51056420 AGGGTAAAATGATAATTCTGTAAATCG
1 AGGGTAATTTG-TAATTTTGTAAATCG
* *
51056447 GGGGTACTTTGGTAATTTT
1 AGGGTAATTT-GTAATTTT
51056466 ACAAGTCGAC
Statistics
Matches: 35, Mismatches: 9, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
26 1 0.03
27 33 0.94
28 1 0.03
ACGTcount: A:0.30, C:0.05, G:0.25, T:0.40
Consensus pattern (26 bp):
AGGGTAATTTGTAATTTTGTAAATCG
Found at i:51058629 original size:43 final size:42
Alignment explanation
Indices: 51058543--51058631 Score: 99
Period size: 43 Copynumber: 2.1 Consensus size: 42
51058533 CTCATAGTAC
* * *
51058543 CATACCAATGCCATATCCCAGATATGGTCTTACATGGGATCT
1 CATACCAATGCCATAGCCCAGATATGGTCTTACACGAGATCT
* * *
51058585 CATATCAATGCCAATAGCTCAGCTATGGTCTTACACGA-AGTCT
1 CATACCAATGCC-ATAGCCCAGATATGGTCTTACACGAGA-TCT
51058628 CATA
1 CATA
51058632 ATATCCCAGA
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
42 12 0.31
43 27 0.69
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (42 bp):
CATACCAATGCCATAGCCCAGATATGGTCTTACACGAGATCT
Found at i:51060854 original size:15 final size:15
Alignment explanation
Indices: 51060834--51060863 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
51060824 ATATGAAAGA
51060834 TATGTTTTGGATTGG
1 TATGTTTTGGATTGG
*
51060849 TATGTTTTGTATTGG
1 TATGTTTTGGATTGG
51060864 AATTTTTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.00, G:0.30, T:0.57
Consensus pattern (15 bp):
TATGTTTTGGATTGG
Found at i:51065469 original size:81 final size:81
Alignment explanation
Indices: 51065247--51065560 Score: 335
Period size: 81 Copynumber: 3.9 Consensus size: 81
51065237 TTAGTTTACC
* *
51065247 AAATCACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAA
1 AAATTACCAAAATACCCCTGA-TTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAA
*
51065311 AATACCCCTGGTTTGTA
65 AATACCCCTAGTTTGTA
* * * * *
51065328 AAATTACCAAAATACCCTTGGTTTGTAAAAATACTAAAATACCCTTGGTTTATAACATTACCAAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAA
51065393 ATACCCCTAGTTTGTA
66 ATACCCCTAGTTTGTA
* * * *** * **
51065409 AAATTACCAAAATACCCCTGATTTGTGAAATTACCAAAATACTCTCGACCTGTAAAATTACTGAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAA
* *
51065474 ATA-CCCTCGACTTGTA
66 ATACCCCTAG-TTTGTA
* * * * *** * * *
51065490 AAATTACCAAAGTACCCCCGATTTATAGAATTACCATTTTACCCTCGATTTATAAAATTACCGAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAA
51065555 ATACCC
66 ATACCC
51065561 TTGTAGGGTA
Statistics
Matches: 193, Mismatches: 37, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
80 5 0.03
81 186 0.96
82 2 0.01
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.30
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAA
ATACCCCTAGTTTGTA
Found at i:51065561 original size:27 final size:27
Alignment explanation
Indices: 51065247--51065561 Score: 278
Period size: 27 Copynumber: 11.7 Consensus size: 27
51065237 TTAGTTTACC
* *
51065247 AAATCACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* * **
51065274 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
*
51065301 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* *
51065328 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * * * *
51065355 AAAATACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
51065382 ACATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
*
51065409 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACCAAAATACCCTC-GATTTGTA
* **
51065436 AAATTACCAAAATACTCTCGACCTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
** *
51065463 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
51065490 AAATTACCAAAGTACCCCCGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* *** *
51065517 GAATTACCATTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
*
51065544 AAATTACCGAAATACCCT
1 AAATTACCAAAATACCCT
51065562 TGTAGGGTAG
Statistics
Matches: 235, Mismatches: 47, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
27 233 0.99
28 2 0.01
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:51065694 original size:26 final size:27
Alignment explanation
Indices: 51065574--51065697 Score: 135
Period size: 27 Copynumber: 4.6 Consensus size: 27
51065564 TAGGGTAGAA
* * *
51065574 TGTAAGGTAGAAATACCGAAATACCCC
1 TGTAGGGTAGAATTACCGAAATACCCT
51065601 TGTAGGGTAGAATTACCGAAATACCCT
1 TGTAGGGTAGAATTACCGAAATACCCT
* **
51065628 TGTAGGGTAGAATCACTAAAATA-CCT
1 TGTAGGGTAGAATTACCGAAATACCCT
* *
51065654 CTGTAGGGTGGAATTACCGAGATA-CCT
1 -TGTAGGGTAGAATTACCGAAATACCCT
* *
51065681 TGTGGGGTAAAATTACC
1 TGTAGGGTAGAATTACC
51065698 ATTTTGCCCC
Statistics
Matches: 82, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
26 17 0.21
27 65 0.79
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (27 bp):
TGTAGGGTAGAATTACCGAAATACCCT
Found at i:51066167 original size:22 final size:22
Alignment explanation
Indices: 51066124--51066188 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
51066114 TTAAAGCCTT
* * * *
51066124 CTGATTATGGCTTTATGTCAAC
1 CTGAATATGGCTCTGTGCCAAC
51066146 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-ATATGGCTCTGTGCCAAC
* *
51066168 CTGATTATGGCTGTGTGCCAA
1 CTGAATATGGCTCTGTGCCAA
51066189 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.34
Consensus pattern (22 bp):
CTGAATATGGCTCTGTGCCAAC
Found at i:51066377 original size:27 final size:27
Alignment explanation
Indices: 51066354--51066448 Score: 113
Period size: 27 Copynumber: 3.5 Consensus size: 27
51066344 TAAGTGGTTT
*
51066354 TGCCACATTATCTGTTTCTGGTGGCTA
1 TGCCACAATATCTGTTTCTGGTGGCTA
*
51066381 TGCCACAAATATCTG-TTCTGGTGGCTC
1 TGCCAC-AATATCTGTTTCTGGTGGCTA
* *
51066408 TGCCACAATATCTGTATT-TGGTGACTC
1 TGCCACAATATCTGT-TTCTGGTGGCTA
*
51066435 TGTCACAATATCTG
1 TGCCACAATATCTG
51066449 ATAACTGAGC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
26 8 0.13
27 44 0.72
28 9 0.15
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.37
Consensus pattern (27 bp):
TGCCACAATATCTGTTTCTGGTGGCTA
Found at i:51066635 original size:31 final size:31
Alignment explanation
Indices: 51066585--51066694 Score: 139
Period size: 31 Copynumber: 3.5 Consensus size: 31
51066575 TTGCATTCAT
*
51066585 ATTCTGATTTTTTATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
*
51066617 ATTTTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * * *
51066648 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* *
51066679 ATTCTAATTCTGATTC
1 ATTCTGATTTTGATTC
51066695 AAGTTCTGAT
Statistics
Matches: 70, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
31 64 0.91
32 6 0.09
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:51066648 original size:6 final size:6
Alignment explanation
Indices: 51066608--51066694 Score: 61
Period size: 6 Copynumber: 14.2 Consensus size: 6
51066598 ATTCTGTTAC
* * * *
51066608 CTGATA CTGATT TTGATT TTGATT CTG-TT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * *
51066657 CTGATT CTG-TCAC CTAATT CTGATT CTAATT CTGATT C
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT C
51066695 AAGTTCTGAT
Statistics
Matches: 64, Mismatches: 11, Indels: 12
0.74 0.13 0.14
Matches are distributed among these distances:
5 3 0.05
6 54 0.84
7 5 0.08
8 2 0.03
ACGTcount: A:0.21, C:0.18, G:0.14, T:0.47
Consensus pattern (6 bp):
CTGATT
Found at i:51066701 original size:12 final size:12
Alignment explanation
Indices: 51066648--51066704 Score: 55
Period size: 12 Copynumber: 4.7 Consensus size: 12
51066638 CCTGATACTG
*
51066648 ATTCTGATTCTG
1 ATTCTGATTCTA
*
51066660 ATTCTG-TCACCTA
1 ATTCTGAT--TCTA
51066673 ATTCTGATTCTA
1 ATTCTGATTCTA
51066685 ATTCTGATTC-A
1 ATTCTGATTCTA
51066696 AGTTCTGAT
1 A-TTCTGAT
51066705 AATGTTTCTT
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
11 3 0.08
12 26 0.68
13 8 0.21
14 1 0.03
ACGTcount: A:0.23, C:0.19, G:0.12, T:0.46
Consensus pattern (12 bp):
ATTCTGATTCTA
Found at i:51067412 original size:37 final size:37
Alignment explanation
Indices: 51067362--51067438 Score: 154
Period size: 37 Copynumber: 2.1 Consensus size: 37
51067352 AAATTCAATC
51067362 CATTTAATACTTATGCTATTCAATTTAGCCTAAAATT
1 CATTTAATACTTATGCTATTCAATTTAGCCTAAAATT
51067399 CATTTAATACTTATGCTATTCAATTTAGCCTAAAATT
1 CATTTAATACTTATGCTATTCAATTTAGCCTAAAATT
51067436 CAT
1 CAT
51067439 ACTTTTACAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.35, C:0.17, G:0.05, T:0.43
Consensus pattern (37 bp):
CATTTAATACTTATGCTATTCAATTTAGCCTAAAATT
Found at i:51067425 original size:21 final size:21
Alignment explanation
Indices: 51067363--51067425 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
51067353 AATTCAATCC
51067363 ATTTAATACTTATGCTATTCA
1 ATTTAATACTTATGCTATTCA
* * **
51067384 ATTT-A-GCCTA--AAATTC-
1 ATTTAATACTTATGCTATTCA
51067400 ATTTAATACTTATGCTATTCA
1 ATTTAATACTTATGCTATTCA
51067421 ATTTA
1 ATTTA
51067426 GCCTAAAATT
Statistics
Matches: 29, Mismatches: 8, Indels: 10
0.62 0.17 0.21
Matches are distributed among these distances:
16 4 0.14
17 5 0.17
18 3 0.10
19 3 0.10
20 5 0.17
21 9 0.31
ACGTcount: A:0.35, C:0.14, G:0.05, T:0.46
Consensus pattern (21 bp):
ATTTAATACTTATGCTATTCA
Found at i:51072186 original size:50 final size:50
Alignment explanation
Indices: 51072076--51072221 Score: 197
Period size: 50 Copynumber: 3.0 Consensus size: 50
51072066 CACATAATAA
* * * * * *
51072076 GATGCCAACGCCATATCCTAGATATGGTCTTACATGGGATCAC-CA-CTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATCTC
* *
51072124 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGGTCTCATATGTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATCTC
*
51072174 GATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCTCATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATC
51072222 AATGCCATAC
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
48 37 0.44
49 1 0.01
50 47 0.55
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (50 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATCTC
Found at i:51072550 original size:27 final size:27
Alignment explanation
Indices: 51072512--51072566 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
51072502 ACAACTAATT
*
51072512 CGATTTAGTCCAAGATGTTACTCTTTC
1 CGATTTAGTCCAAGATCTTACTCTTTC
*
51072539 CGATTTAGTCCAAGATCTTGCTCTTTC
1 CGATTTAGTCCAAGATCTTACTCTTTC
51072566 C
1 C
51072567 CCGGTCTAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.20, C:0.25, G:0.15, T:0.40
Consensus pattern (27 bp):
CGATTTAGTCCAAGATCTTACTCTTTC
Found at i:51077029 original size:28 final size:28
Alignment explanation
Indices: 51076964--51077114 Score: 205
Period size: 28 Copynumber: 5.4 Consensus size: 28
51076954 GAGATTGGCG
* * * *
51076964 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
51076993 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
* *
51077021 CTAAGTGTGCGAGCTTGATTATCTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
51077049 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
51077077 CTAAGTGTGTGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
51077104 CTGAGTGTGCG
1 CTAAGTGTGCG
51077115 GACTTAATAT
Statistics
Matches: 110, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
27 23 0.21
28 72 0.65
29 15 0.14
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:51085202 original size:27 final size:28
Alignment explanation
Indices: 51085171--51085240 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
51085161 ATATTAAGTC
* *
51085171 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
51085198 TGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
51085226 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51085241 GTACAATTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 20 0.53
28 18 0.47
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:51089708 original size:19 final size:18
Alignment explanation
Indices: 51089666--51089708 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
51089656 TCATGCTTTC
*
51089666 TATTCACATTTTCATATT
1 TATTCACATTTTCAAATT
51089684 TAATTCACATTTTCAAATT
1 T-ATTCACATTTTCAAATT
51089703 ATATTC
1 -TATTC
51089709 CACTTAGTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 1 0.05
19 20 0.91
20 1 0.05
ACGTcount: A:0.33, C:0.16, G:0.00, T:0.51
Consensus pattern (18 bp):
TATTCACATTTTCAAATT
Found at i:51089838 original size:44 final size:45
Alignment explanation
Indices: 51089788--51089879 Score: 132
Period size: 44 Copynumber: 2.1 Consensus size: 45
51089778 ACAAATACAT
*
51089788 GGTGGAATCAGCACATAGCAACCACC-TTATAATCAATGATACTC
1 GGTGGAATCAGCACATAGCAACCACCTTTATAATCAATGATACCC
* * * *
51089832 GGTGGAATCAGCATATTGCAACCACCTTTATAGTCAATGGTACCC
1 GGTGGAATCAGCACATAGCAACCACCTTTATAATCAATGATACCC
51089877 GGT
1 GGT
51089880 TCACATAGTA
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 24 0.57
45 18 0.43
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.25
Consensus pattern (45 bp):
GGTGGAATCAGCACATAGCAACCACCTTTATAATCAATGATACCC
Found at i:51089961 original size:51 final size:50
Alignment explanation
Indices: 51089885--51090069 Score: 176
Period size: 51 Copynumber: 3.7 Consensus size: 50
51089875 CCGGTTCACA
* * *
51089885 TAGTAGCCTACACATAGTACTACACATGTGA-CCATTTCCATCCGATGCACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCCA--TCCATCCGATACACG
* *** * * * * *
51089936 TAGTAGCCTGTACATAGTACTACACACGTGATTGAAGCTATTCGATACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCCATCCATCCGATACACG
* * *
51089987 TAGTAGCCTGCACATAGTACTACACATGCGACCCAT-CATTCCGGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCCATCCA-TCCGATACACG
*
51090037 TAGTAGACTGCACATAGTACTACACACGTGACC
1 TAGTAGCCTGCACATAGTACTACACACGTGACC
51090070 ATCACTTTCA
Statistics
Matches: 105, Mismatches: 26, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
49 1 0.01
50 38 0.36
51 65 0.62
53 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCCATCCATCCGATACACG
Found at i:51090066 original size:101 final size:101
Alignment explanation
Indices: 51089883--51090067 Score: 275
Period size: 101 Copynumber: 1.8 Consensus size: 101
51089873 ACCCGGTTCA
* * * *
51089883 CATAGTAGCCTACACATAGTACTACACATGTGACCATTTCCATCCGATGCACGTAGTAGCCTGTA
1 CATAGTAGCCTACACATAGTACTACACATGCGACCA-TTCCATCCGATACACGTAGTAGACTGCA
51089948 CATAGTACTACACACGTGATTGAAGCTATTCGATACG
65 CATAGTACTACACACGTGATTGAAGCTATTCGATACG
* *
51089985 CATAGTAGCCTGCACATAGTACTACACATGCGACCCA-T-CATTCCGGTACACGTAGTAGACTGC
1 CATAGTAGCCTACACATAGTACTACACATGCGA-CCATTCCA-TCCGATACACGTAGTAGACTGC
51090048 ACATAGTACTACACACGTGA
64 ACATAGTACTACACACGTGA
51090068 CCATCACTTT
Statistics
Matches: 75, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
100 2 0.03
101 39 0.52
102 31 0.41
103 3 0.04
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (101 bp):
CATAGTAGCCTACACATAGTACTACACATGCGACCATTCCATCCGATACACGTAGTAGACTGCAC
ATAGTACTACACACGTGATTGAAGCTATTCGATACG
Found at i:51092773 original size:28 final size:28
Alignment explanation
Indices: 51092710--51092832 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
51092700 ATATTAAGTC
*
51092710 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
51092737 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
51092765 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
51092793 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
51092822 CGCACACTTAG
1 CGCACACTTAG
51092833 CGCCAATCTC
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.25
28 49 0.56
29 16 0.18
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:51093296 original size:12 final size:12
Alignment explanation
Indices: 51093279--51093304 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
51093269 TGGGCATACT
51093279 TATGTATATATA
1 TATGTATATATA
51093291 TATGTATATATA
1 TATGTATATATA
51093303 TA
1 TA
51093305 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
TATGTATATATA
Found at i:51095310 original size:41 final size:41
Alignment explanation
Indices: 51095254--51095568 Score: 450
Period size: 41 Copynumber: 7.7 Consensus size: 41
51095244 TTAATATAAA
* * * *
51095254 CAGATTCACTGGCACTTAGCTTGTTAGGCTTAAAGCCTGATT
1 CAGA-TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
* * * *
51095296 CAAATCACCAGCACTTAGCCTGCTAGGCTTATAGCCTAATC
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
*
51095337 CAGTTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
* * * *
51095378 CAGATCACCAGCACTTAGCCTGCTAGACTTATAGCCTAATC
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
* *
51095419 CAGTTCACCGGCACTTAGCCTGCTAGGTTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
51095460 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
* * *
51095501 CAGTTCACCGGCACTTAGCCTGCTAGGCTTGTAACCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
*
51095542 TAGATCACCGGCACTTAGCCTGCTAGG
1 CAGATCACCGGCACTTAGCCTGCTAGG
51095569 TTTTAAAACC
Statistics
Matches: 242, Mismatches: 31, Indels: 1
0.88 0.11 0.00
Matches are distributed among these distances:
41 239 0.99
42 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (41 bp):
CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
Found at i:51095395 original size:82 final size:82
Alignment explanation
Indices: 51095258--51095568 Score: 496
Period size: 82 Copynumber: 3.8 Consensus size: 82
51095248 TATAAACAGA
* * * * *
51095258 TTCACTGGCACTTAGCTTGTTAGGCTTAAAGCCTGATTCAAATCACCAGCACTTAGCCTGCTAGG
1 TTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCAGCACTTAGCCTGCTAGG
51095323 CTTATAGCCTAATCCAG
66 CTTATAGCCTAATCCAG
*
51095340 TTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCAGCACTTAGCCTGCTAGA
1 TTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCAGCACTTAGCCTGCTAGG
51095405 CTTATAGCCTAATCCAG
66 CTTATAGCCTAATCCAG
* *
51095422 TTCACCGGCACTTAGCCTGCTAGGTTTATAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGG
1 TTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCAGCACTTAGCCTGCTAGG
* *
51095487 CTTATAGCCTGATTCAG
66 CTTATAGCCTAATCCAG
* * * *
51095504 TTCACCGGCACTTAGCCTGCTAGGCTTGTAACCTGATTTAGATCACCGGCACTTAGCCTGCTAGG
1 TTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCAGCACTTAGCCTGCTAGG
51095569 TTTTAAAACC
Statistics
Matches: 214, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
82 214 1.00
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (82 bp):
TTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCAGCACTTAGCCTGCTAGG
CTTATAGCCTAATCCAG
Found at i:51097854 original size:59 final size:59
Alignment explanation
Indices: 51097762--51097878 Score: 225
Period size: 59 Copynumber: 2.0 Consensus size: 59
51097752 CAGACTTTAC
*
51097762 TAATTAATTTTCAGACTTTTCTTTTCATCAAGCATTCATATTTCTAACCAATCAAAATA
1 TAATTAATTTTCAGACTTTTCTTTTCATCAAGCATTCATATTTATAACCAATCAAAATA
51097821 TAATTAATTTTCAGACTTTTCTTTTCATCAAGCATTCATATTTATAACCAATCAAAAT
1 TAATTAATTTTCAGACTTTTCTTTTCATCAAGCATTCATATTTATAACCAATCAAAAT
51097879 CAAAACATTA
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.36, C:0.18, G:0.03, T:0.43
Consensus pattern (59 bp):
TAATTAATTTTCAGACTTTTCTTTTCATCAAGCATTCATATTTATAACCAATCAAAATA
Found at i:51099278 original size:79 final size:79
Alignment explanation
Indices: 51099147--51099303 Score: 262
Period size: 79 Copynumber: 2.0 Consensus size: 79
51099137 TTCCCATCAC
* * *
51099147 TTTCACTTATTTCTCTTCACTAATATATCAAGAACATAAGAATTTATATAAGAAAACTCTACTAT
1 TTTCACTTATTTATCTTCACTAATATATCAAGAACATAAGAATATATATAAGAAAACTCAACTAT
51099212 AACATCTTTTCCAT
66 AACATCTTTTCCAT
*
51099226 TTTCACTTATTTATCTT-AGCTAATATATCAAGAACATAAGAATATGTATAAGAAAACTCAACTA
1 TTTCACTTATTTATCTTCA-CTAATATATCAAGAACATAAGAATATATATAAGAAAACTCAACTA
51099290 TAACATCTTTTCCA
65 TAACATCTTTTCCA
51099304 CGCTATTTCA
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
78 1 0.01
79 72 0.99
ACGTcount: A:0.39, C:0.18, G:0.05, T:0.38
Consensus pattern (79 bp):
TTTCACTTATTTATCTTCACTAATATATCAAGAACATAAGAATATATATAAGAAAACTCAACTAT
AACATCTTTTCCAT
Found at i:51099859 original size:312 final size:312
Alignment explanation
Indices: 51099294--51099916 Score: 1142
Period size: 312 Copynumber: 2.0 Consensus size: 312
51099284 CAACTATAAC
51099294 ATCTTTTCCACGCTATTTCAATAATATCAAACTTAAAAATATATTGAAATCTCAATGTTCTTACC
1 ATCTTTTCCACGCTATTTCAATAATATCAAACTTAAAAATATATTGAAATCTCAATGTTCTTACC
51099359 TTGTCCTATTGATTTCAACCTTTAACTTGATTTTCTCTCTCCTCCAGCTTCAATTTCTTGAATCC
66 TTGTCCTATTGATTTCAACCTTTAACTTGATTTTCTCTCTCCTCCAGCTTCAATTTCTTGAATCC
*
51099424 AACTTGATATTCTAGGTCCCCATAGCCTTCTTGTTATCTTTCTCTCTTGATGGCTATGGAAATTC
131 AACTTGATATTCTAGCTCCCCATAGCCTTCTTGTTATCTTTCTCTCTTGATGGCTATGGAAATTC
*
51099489 TTTTTGATTTCTAAGTGAAATGGTTAATTTTTTTGGTGGAAGGACCAAATTGTAAAGAAAGCAAA
196 TTTTTGATTTCTAAGTGAAATGGTGAATTTTTTTGGTGGAAGGACCAAATTGTAAAGAAAGCAAA
51099554 ACTTTCTTTCTTCTCTTCTCTTCTAACGTGAATTGCATGGAAAAGATGGTGT
261 ACTTTCTTTCTTCTCTTCTCTTCTAACGTGAATTGCATGGAAAAGATGGTGT
51099606 ATCTTTTCCACGCTATTTCAATAATATCAAACTTAAAAATATATTGAAATCTCAATGTTCTTACC
1 ATCTTTTCCACGCTATTTCAATAATATCAAACTTAAAAATATATTGAAATCTCAATGTTCTTACC
*
51099671 TTGTCCTATTGATTTCAACCTTTAACTTGATTTTCTCTCTCCTCCAGCTTCAATTTCTTGAATTC
66 TTGTCCTATTGATTTCAACCTTTAACTTGATTTTCTCTCTCCTCCAGCTTCAATTTCTTGAATCC
*
51099736 AACTTGATATTCTAGCTCCCCATAGTC-TCATTGTTATCTTTCTCTCTTGATGGCTATGGAAATT
131 AACTTGATATTCTAGCTCCCCATAGCCTTC-TTGTTATCTTTCTCTCTTGATGGCTATGGAAATT
*
51099800 C-TTTTGATTTCTAATTGAAAATGGTGAATTTTTTTGGTGGAAGGACCAAATTGTAAAGAAAGCA
195 CTTTTTGATTTCTAAGTG-AAATGGTGAATTTTTTTGGTGGAAGGACCAAATTGTAAAGAAAGCA
* * *
51099864 AAACTTTCTTTCTTCTTTTCTTTTCTAACGTGAATTGCGTGGAAAAGATGGTG
259 AAACTTTCTTTCTTCTCTTCTCTTCTAACGTGAATTGCATGGAAAAGATGGTG
51099917 GGTTGGTTCC
Statistics
Matches: 301, Mismatches: 8, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
311 17 0.06
312 284 0.94
ACGTcount: A:0.27, C:0.19, G:0.13, T:0.41
Consensus pattern (312 bp):
ATCTTTTCCACGCTATTTCAATAATATCAAACTTAAAAATATATTGAAATCTCAATGTTCTTACC
TTGTCCTATTGATTTCAACCTTTAACTTGATTTTCTCTCTCCTCCAGCTTCAATTTCTTGAATCC
AACTTGATATTCTAGCTCCCCATAGCCTTCTTGTTATCTTTCTCTCTTGATGGCTATGGAAATTC
TTTTTGATTTCTAAGTGAAATGGTGAATTTTTTTGGTGGAAGGACCAAATTGTAAAGAAAGCAAA
ACTTTCTTTCTTCTCTTCTCTTCTAACGTGAATTGCATGGAAAAGATGGTGT
Found at i:51107898 original size:19 final size:19
Alignment explanation
Indices: 51107871--51107910 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
51107861 ATTATGTTTA
51107871 ATATATGTTTTATTTATAT
1 ATATATGTTTTATTTATAT
* *
51107890 ATATTTGTTTTATTTTTAT
1 ATATATGTTTTATTTATAT
51107909 AT
1 AT
51107911 GAATAAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.68
Consensus pattern (19 bp):
ATATATGTTTTATTTATAT
Found at i:51111760 original size:93 final size:93
Alignment explanation
Indices: 51111601--51111771 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
51111591 CCCATAAGCG
* * *
51111601 AACTCGGACTCAACTCAACGAGCTCGGGCGTCCGCATCCATAAGTGAACTTGTACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATCCGCATCCATAAGTGAACTTGGACTCAACTCAAC
51111666 GAGTTCGGATGCCTAGTTACATCTCACA
66 GAGTTCGGATGCCTAGTTACATCTCACA
* * *
51111694 AACTCGGACTTAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTTGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATCCGCATCCATAAGTGAACTTGGACTCAACTCAAC
51111759 GAGTTCGGATGCC
66 GAGTTCGGATGCC
51111772 CAAATATCCT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATCCGCATCCATAAGTGAACTTGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCACA
Found at i:51111762 original size:46 final size:46
Alignment explanation
Indices: 51111592--51111767 Score: 164
Period size: 46 Copynumber: 3.8 Consensus size: 46
51111582 TGTAACCCGC
* * * * *
51111592 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTCCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
51111638 CCATAAGTGAACTTGTACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
51111688 CTCA-CA---AACTCGGACTTAACTCAACGAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
51111731 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
51111768 TGCCCAAATA
Statistics
Matches: 103, Mismatches: 16, Indels: 22
0.73 0.11 0.16
Matches are distributed among these distances:
42 4 0.04
43 6 0.06
44 1 0.01
46 58 0.56
47 25 0.24
49 1 0.01
50 5 0.05
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:51113234 original size:17 final size:18
Alignment explanation
Indices: 51113206--51113243 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
51113196 CCATAGCCAA
*
51113206 ATATAGACAGAATATCAG
1 ATATAGACAGAATAACAG
51113224 ATATA-ACAGAATAACAG
1 ATATAGACAGAATAACAG
51113241 ATA
1 ATA
51113244 CCAGAACGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.55, C:0.11, G:0.13, T:0.21
Consensus pattern (18 bp):
ATATAGACAGAATAACAG
Found at i:51114908 original size:21 final size:21
Alignment explanation
Indices: 51114884--51114924 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
51114874 CGGGCATATG
51114884 CCCTAATCACAC-AGCCGTGTA
1 CCCTAATCACACTA-CCGTGTA
51114905 CCCTAATCACACTACCGTGT
1 CCCTAATCACACTACCGTGT
51114925 GCCTCTTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.27, C:0.39, G:0.12, T:0.22
Consensus pattern (21 bp):
CCCTAATCACACTACCGTGTA
Found at i:51115667 original size:30 final size:30
Alignment explanation
Indices: 51115631--51115690 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
51115621 ATTCTATCTG
*
51115631 GCAATCTAACTGCAAATTACTGATATAGCA
1 GCAATCTAACTGCAAATTACCGATATAGCA
51115661 GCAATCTAACTGCAAATTACCGATATAGCA
1 GCAATCTAACTGCAAATTACCGATATAGCA
51115691 AACTATCGCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.40, C:0.22, G:0.13, T:0.25
Consensus pattern (30 bp):
GCAATCTAACTGCAAATTACCGATATAGCA
Found at i:51120977 original size:55 final size:53
Alignment explanation
Indices: 51120916--51121064 Score: 183
Period size: 55 Copynumber: 2.8 Consensus size: 53
51120906 ATGGCATTGG
* *
51120916 TAAGGCAAGGATCCCGTGTAAGACAATGTCAAGACATGGCATTGATGAGTGACTA
1 TAAGGCAAGGATCCCATGTAAGACCATGTCAAGACATGGCATTGATGAGT-AC-A
* * * *
51120971 TAAGGCAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCA
1 TAAGGC-AAGGATCCCATGTAAGACCATGTCAAGACATGGCATTGATGAGTACA
* * *
51121024 TAAGGCAAAGATACCACGTAAGACCATGTCAAGACATGGCA
1 TAAGGCAAGGATCCCATGTAAGACCATGTCAAGACATGGCA
51121065 ATGGTAAGTT
Statistics
Matches: 81, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
52 3 0.04
53 33 0.41
54 1 0.01
55 40 0.49
56 4 0.05
ACGTcount: A:0.35, C:0.19, G:0.26, T:0.19
Consensus pattern (53 bp):
TAAGGCAAGGATCCCATGTAAGACCATGTCAAGACATGGCATTGATGAGTACA
Found at i:51121049 original size:53 final size:53
Alignment explanation
Indices: 51120933--51121076 Score: 180
Period size: 53 Copynumber: 2.7 Consensus size: 53
51120923 AGGATCCCGT
* * * * * *
51120933 GTAAGACAATGTCAAGACATGGCATTGATGAGTGACTATAAGGCAAAGGTCCCAT
1 GTAAGACCATGTCAAGACATGGCATTGGTGAGT-TC-ATAAGGCAAAGATACCAC
* *
51120988 GTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAAGATACCAC
1 GTAAGACCATGTCAAGACATGGCATTGGTGAGTTCATAAGGCAAAGATACCAC
* *
51121041 GTAAGACCATGTCAAGACATGGCAATGGTAAGTTCA
1 GTAAGACCATGTCAAGACATGGCATTGGTGAGTTCA
51121077 AAAAGAAAAA
Statistics
Matches: 77, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
53 47 0.61
54 1 0.01
55 29 0.38
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.21
Consensus pattern (53 bp):
GTAAGACCATGTCAAGACATGGCATTGGTGAGTTCATAAGGCAAAGATACCAC
Found at i:51122041 original size:13 final size:13
Alignment explanation
Indices: 51122023--51122048 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51122013 CCCTGTTCTG
51122023 GATTTATAAACTC
1 GATTTATAAACTC
51122036 GATTTATAAACTC
1 GATTTATAAACTC
51122049 ACTAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (13 bp):
GATTTATAAACTC
Found at i:51124262 original size:24 final size:22
Alignment explanation
Indices: 51124241--51124284 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
51124231 TTCAATTTAT
51124241 TTTATTATATATATAAATATTTG
1 TTTATT-TATATATAAATATTTG
* *
51124264 TTTATTTATATTTATATATTT
1 TTTATTTATATATAAATATTT
51124285 TTGTTTGCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (22 bp):
TTTATTTATATATAAATATTTG
Found at i:51124287 original size:24 final size:23
Alignment explanation
Indices: 51124241--51124290 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
51124231 TTCAATTTAT
51124241 TTTATTATATATATAAATATTTG
1 TTTATTATATATATAAATATTTG
* * *
51124264 TTTATTTATATTTATATATTTTTG
1 TTTA-TTATATATATAAATATTTG
51124288 TTT
1 TTT
51124291 GCTAACGTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 4 0.17
24 19 0.83
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (23 bp):
TTTATTATATATATAAATATTTG
Found at i:51127935 original size:40 final size:36
Alignment explanation
Indices: 51127891--51127975 Score: 100
Period size: 37 Copynumber: 2.2 Consensus size: 36
51127881 ATTAAATCAG
*
51127891 TTATTTTTATTTTCTTTGCTATTATTTTTA-TAATCATTAA
1 TTATTTTTA-TTTCTTT--TATTATTATTACT-ATCATT-A
*
51127931 TTATTATTATTTCTTTTATTATTATTACTATCATTA
1 TTATTTTTATTTCTTTTATTATTATTACTATCATTA
51127967 TTATTTTTA
1 TTATTTTTA
51127976 GTAGTAGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
36 9 0.22
37 16 0.39
38 1 0.02
39 7 0.17
40 8 0.20
ACGTcount: A:0.26, C:0.07, G:0.01, T:0.66
Consensus pattern (36 bp):
TTATTTTTATTTCTTTTATTATTATTACTATCATTA
Found at i:51127938 original size:3 final size:3
Alignment explanation
Indices: 51127910--51128054 Score: 85
Period size: 3 Copynumber: 47.3 Consensus size: 3
51127900 TTTTCTTTGC
* * * *
51127910 TAT TAT TTT TAT AAT CAT TAAT TAT TAT TAT T-T CTTT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT -TAT TAT TAT TAT
* * * * * * * *
51127956 TAC TAT CAT TAT TAT TTT TAG TAG TAG TAT TAT TAT CAT TACT TTT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT
* ** * * *
51128002 TAT TAT TGT CCT TAC TAT TGT TAT TCTT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT
51128048 TAT TAT T
1 TAT TAT T
51128055 TTAGCCTTGT
Statistics
Matches: 108, Mismatches: 29, Indels: 10
0.73 0.20 0.07
Matches are distributed among these distances:
2 1 0.01
3 99 0.92
4 8 0.07
ACGTcount: A:0.28, C:0.07, G:0.03, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:51128007 original size:19 final size:19
Alignment explanation
Indices: 51127983--51128050 Score: 57
Period size: 19 Copynumber: 3.5 Consensus size: 19
51127973 TTAGTAGTAG
51127983 TATTATTATCATTACTTTT
1 TATTATTATCATTACTTTT
* *
51128002 TATTATTGTCCTTACTATTGT
1 TATTATTATCATTACT-TT-T
* * *
51128023 TATTCTTTATTATTA-TTAT
1 TATT-ATTATCATTACTTTT
51128042 TATTATTAT
1 TATTATTAT
51128051 TATTTTAGCC
Statistics
Matches: 38, Mismatches: 8, Indels: 7
0.72 0.15 0.13
Matches are distributed among these distances:
18 4 0.11
19 19 0.50
20 3 0.08
21 6 0.16
22 6 0.16
ACGTcount: A:0.25, C:0.09, G:0.03, T:0.63
Consensus pattern (19 bp):
TATTATTATCATTACTTTT
Found at i:51130098 original size:23 final size:23
Alignment explanation
Indices: 51130055--51130098 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
51130045 TTGATAGAGT
*
51130055 AAAAAATATTTGAGATAATTAAA
1 AAAAAATATTTGAAATAATTAAA
*
51130078 AAAATAATATTT-AAATTATTA
1 AAAA-AATATTTGAAATAATTA
51130099 TTTGAATTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 11 0.61
24 7 0.39
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (23 bp):
AAAAAATATTTGAAATAATTAAA
Found at i:51136320 original size:40 final size:40
Alignment explanation
Indices: 51136259--51136334 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
51136249 CGGTACTCTA
* **
51136259 TGGTGTGTAGGGTTGGATGGGTTGATTTTATCCCCATATT
1 TGGTGTGTAGGGATGGATGGGTCAATTTTATCCCCATATT
*
51136299 TGGTGTGTAGGGATGGGTGGGTCAATTTTATCCCCA
1 TGGTGTGTAGGGATGGATGGGTCAATTTTATCCCCA
51136335 CATGGTGTGT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.16, C:0.12, G:0.34, T:0.38
Consensus pattern (40 bp):
TGGTGTGTAGGGATGGATGGGTCAATTTTATCCCCATATT
Found at i:51153906 original size:44 final size:44
Alignment explanation
Indices: 51153857--51154048 Score: 242
Period size: 44 Copynumber: 4.4 Consensus size: 44
51153847 GAGTGAGATG
* * * *
51153857 AAGCTACAAATCCCATATCTC-AGAAGTTACAGTAGATCAGATTA
1 AAGCTACAAATCCTATCTCCCTA-AAGTTACAGTAGAGCAGATTA
* * * *
51153901 AAGCTACAAATCTTATCTCCCTAAAGTTACAATTGAGCATATTA
1 AAGCTACAAATCCTATCTCCCTAAAGTTACAGTAGAGCAGATTA
* * * * *
51153945 AAGCTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTA
1 AAGCTACAAATCCTATCTCCCTAAAGTTACAGTAGAGCAGATTA
51153989 AAGCTACAAATCCTATCTCCCTAAAGTTACAGTAGAGCAGATTA
1 AAGCTACAAATCCTATCTCCCTAAAGTTACAGTAGAGCAGATTA
*
51154033 AAGCGACAAATCCTAT
1 AAGCTACAAATCCTAT
51154049 ACCTCTGAAA
Statistics
Matches: 128, Mismatches: 19, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
44 127 0.99
45 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.14, T:0.27
Consensus pattern (44 bp):
AAGCTACAAATCCTATCTCCCTAAAGTTACAGTAGAGCAGATTA
Found at i:51154057 original size:88 final size:88
Alignment explanation
Indices: 51153857--51154257 Score: 297
Period size: 88 Copynumber: 4.4 Consensus size: 88
51153847 GAGTGAGATG
* * * * * * *
51153857 AAGCTACAAATCCCATATCTCAGAAGTTACAGTAGATCAGATTAAAGCTACAAATCTTATCTCCC
1 AAGCTACAAATCCTATACCTCTGAAGTTGCAGTGGAGCAAATTAAAGCTACAAATCTTATCTCCC
* * *
51153922 TAAAGTTACAATTGAGCATATTA
66 TAAAGTTACAGTGGAGCAGATTA
* * *
51153945 AAGCTACAAATCTTAT-CTCCCTGAAGTTGCAGTGGAGCAAATTAAAGCTACAAATCCTATCTCC
1 AAGCTACAAATCCTATAC-CTCTGAAGTTGCAGTGGAGCAAATTAAAGCTACAAATCTTATCTCC
*
51154009 CTAAAGTTACAGTAGAGCAGATTA
65 CTAAAGTTACAGTGGAGCAGATTA
* * ** * * *
51154033 AAGCGACAAATCCTATACCTCTGAAATTTTATTGG-GTCAAATCAAATCTACCATAACAAGTCTT
1 AAGCTACAAATCCTATACCTCTGAAGTTGCAGTGGAG-CAAATTAAAGCTA-C---A-AA-TCTT
* * * *
51154097 ATTTCCCTGAAGTTGCAGTGGAACAGATTA
59 ATCTCCCTAAAGTTACAGTGGAGCAGATTA
* * * *
51154127 AAGCTACAAGTTACAAATCT-TATCTCTCTGAAGTTGTAGTGGAACAGATTAAAGCTACAAATCT
1 AAGCTACAA-AT-C----CTATA-C-CTCTGAAGTTGCAGTGGAGCAAATTAAAGCTACAAATCT
* * *
51154191 TATCTCCCTGAAGTTGCAGTGGAGTAGATTGA
58 TATCTCCCTAAAGTTACAGTGGAGCAGATT-A
* * * *
51154223 AA-CTATAATTCCTATACCCCTAAAGTTGCAGTGGA
1 AAGCTACAAATCCTATACCTCTGAAGTTGCAGTGGA
51154258 TTAGAATAGG
Statistics
Matches: 249, Mismatches: 44, Indels: 40
0.75 0.13 0.12
Matches are distributed among these distances:
87 1 0.00
88 126 0.51
89 5 0.02
90 2 0.01
92 1 0.00
93 3 0.01
94 38 0.15
95 36 0.14
96 6 0.02
97 1 0.00
99 2 0.01
100 4 0.02
101 24 0.10
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29
Consensus pattern (88 bp):
AAGCTACAAATCCTATACCTCTGAAGTTGCAGTGGAGCAAATTAAAGCTACAAATCTTATCTCCC
TAAAGTTACAGTGGAGCAGATTA
Found at i:51154169 original size:51 final size:51
Alignment explanation
Indices: 51154088--51154213 Score: 167
Period size: 51 Copynumber: 2.6 Consensus size: 51
51154078 ATCTACCATA
* *
51154088 ACAAGTCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTT
* *
51154139 ACAAATCTTATCTCTCTGAAGTTGTAGTGGAACAGATTAAAG---C----T
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTT
51154183 ACAAATCTTATCTCCCTGAAGTTGCAGTGGA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGA
51154214 GTAGATTGAA
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
44 30 0.43
48 1 0.01
51 38 0.55
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (51 bp):
ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTT
Found at i:51154220 original size:44 final size:44
Alignment explanation
Indices: 51154138--51154262 Score: 137
Period size: 44 Copynumber: 2.8 Consensus size: 44
51154128 AGCTACAAGT
* * *
51154138 TACAAATCTTATCTCTCTGAAGTTGTAGTGGAACAGATT-AAAGC
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTGAAA-C
*
51154182 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAAC
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTGAAAC
* * * * *
51154226 TATAATTCCTATAC-CCCTAAAGTTGCAGTGGATTAGA
1 TACAAATCTTAT-CTCCCTGAAGTTGCAGTGGAATAGA
51154263 ATAGGCTACT
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
44 66 0.94
45 4 0.06
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (44 bp):
TACAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTGAAAC
Found at i:51157618 original size:30 final size:31
Alignment explanation
Indices: 51157582--51157652 Score: 117
Period size: 30 Copynumber: 2.3 Consensus size: 31
51157572 TTAGATTCAG
51157582 TGCTAATCTTCTATTCAAATTAATGGA-TTT
1 TGCTAATCTTCTATTCAAATTAATGGACTTT
51157612 TGCTAATCTTCTATTCAAATTAATGGACTTT
1 TGCTAATCTTCTATTCAAATTAATGGACTTT
* *
51157643 TACGAATCTT
1 TGCTAATCTT
51157653 GCCAAAATTC
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
30 27 0.71
31 11 0.29
ACGTcount: A:0.30, C:0.15, G:0.10, T:0.45
Consensus pattern (31 bp):
TGCTAATCTTCTATTCAAATTAATGGACTTT
Found at i:51159713 original size:921 final size:928
Alignment explanation
Indices: 51158024--51159767 Score: 2587
Period size: 921 Copynumber: 1.9 Consensus size: 928
51158014 GTTCCACAAA
* **
51158024 CTAGCCACACGACCGTGCAACCCATCTACATGGCTTAAAGTATCACATCCCAAAAATTAGGTTAG
1 CTAGCCACACGACCGTGCAACCCATCCACATGGCTTAAAGTATCACATCCCAAAAAACAGGTTAG
* *
51158089 AAAAAATTGGATTAGTGAAACCAAGAGTGGTCACGTCCTAATTTTAAGTTATGATTGTGAAAATG
66 AAAAAATTGGACTAGTGAAACCAAGAGTGGTCACGTCATAATTTTAAGTTATGATTGTGAAAATG
* * * ** *
51158154 TTATCAAGTGAATTGATCTACTTCGGTTGTTAAAAGTTCTTTATGTGTGTTTGAGGTCCTATGTT
131 TTATCAAGTGAATTGATCTACTTCAGTGGTTAAAAGCTCTGGATGTGTGGTTGAGGTCCTATGTT
* *
51158219 CAAACCACCGTGTGTGCATAATGGAATTATTTTTCGTTTTGAGCTCTGGAAAAAATCTAATTGGA
196 CAAACCACCGTGTGTGCATAATGGAATTATTTTTCATTTTGAGCTCTGGAAAAAATCTAATAGGA
* *
51158284 TAACTAATCAGATTTAGTAGAGGTAATGGGTAGTTTTTTTTAAAAGTTTTAATTTATTAAAAGAT
261 TAACTAATCAGATTTAGTAGAGGTAATGGGCAG-TTTTTTTAAAAGTTTTAATTAATTAAAAGAT
51158349 TTACTTCCCAAAATTTTCCCCACTCTCCATACCACGTCCAACTTCCCACTTCCCCATCTTTCCTA
325 TTACTTCCCAAAATTTTCCCCACTCTCCATACCACGTCCAACTTCCCACTTCCCCATCTTTCCTA
* **
51158414 TTATTCTGTTTTTTTCTTTTTTTCTCTTTGTTTTTCTTTTTGTTGATTATTCTATTCCAAATTTT
390 TTATTCTGTTTTTTTCTTTCTTTCTCTTTCCTTTTC-TTTTGTTG---ATTCTATTCCAAATTTT
* *
51158479 CTCCCATAATTTCTGGAATTAATTTTGCCATTGTGGTGTTCCGTTTTTAGGTGTTTTCCATTGTC
451 CTCCCACAATTTCTGGAATTAATTTTGCCATTGTAGTGTTCCGTTTTTAGGTGTTTTCCATTGTC
* *
51158544 ATTTGTTCATCTTCTGGTAAGTGTTTCATTACTTGTTATGGGAGCAATTTTTATCATTCTTAGTC
516 ATGTGTTCATCTTCTGGTAAGTGTATCATTACTTGTTATGGGAGCAATTTTTATCATTCTTAGTC
*
51158609 TGTTTCAAAGGATGAAGGGTGAATGTGTGGGTTGTTATTTGTTTATGTATTAATGGTGTTATGTT
581 TGTTTCAAAGGACGAAGGGTGAATGTGTGGGTTGTTATTTGTTTATGTATTAATGGTGTTATGTT
* * * * *
51158674 GTTCTGTAAGAAGAAATTTGAAAGTCTTACGATGTTTTTCCAATAGAATAGGTGCTTTGGGGTTG
646 GTTCTGTAAGAACAAATTTG-AAGTCTTACAACGTTTTTCCAACAGAATAGGTGCTTTGGGGTGG
*
51158739 TTGTTTCTATCAAGAGTAAGTGCTCATATATTGATTTTAGGGATTACTTTTTTTTAAGAAATGAA
710 TTGTTTCTATCAAGAGTAAGTGCTCATATATTAATTTTAGGGATTACTTTTTTTTAAGAAATGAA
*
51158804 T-G-AATAATTGGGTTAACTTGTGTTAGTTAATCGATTCAATTTTGGGTTTGATTCTGACATGGC
775 TGGTAA-AATTGGGTTAACTTGTATTAGTTAATCGATTCAATTTTGGGTTTGATTCTGACATGGC
51158867 CTAAGACCCTCCACATGGCCTCCCATACAGTTGTGCCTATCGTGAAGCCTAATTTTGTGTGTCCC
839 CTAAGACCCTCCACATGGCCTCCCATACAGTTGTGCCTATCGTGAAGCCTAATTTTGTGTGTCCC
51158932 ACACAGCCACAGTCTGTTCTATGGC
904 ACACAGCCACAGTCTGTTCTATGGC
* * * * *
51158957 CTAGCCATACGGCCGTGTAACCCCTCCACATGGCTTAAGGTATCACATCCCAAAAAACAGGTTAG
1 CTAGCCACACGACCGTGCAACCCATCCACATGGCTTAAAGTATCACATCCCAAAAAACAGGTTAG
* * * * *
51159022 AACAATTTGGGCTAGTGAAACCAAGAGTGGTCACG-CATGATTTTGAGTTATGATTGTGAAAATG
66 AAAAAATTGGACTAGTGAAACCAAGAGTGGTCACGTCATAATTTTAAGTTATGATTGTGAAAATG
* * * *
51159086 TTATCAAGTGGATTGATCTGCTTCAGTGGTTAAAAGCTCTGGATGTGTGGTTGAGGTCTTGTGTT
131 TTATCAAGTGAATTGATCTACTTCAGTGGTTAAAAGCTCTGGATGTGTGGTTGAGGTCCTATGTT
* *
51159151 CAAACTATCGTGTGTGCATAATGGAATTATTTTTCATTTTGAGCTCTGGAAAAAATCTAATAGGA
196 CAAACCACCGTGTGTGCATAATGGAATTATTTTTCATTTTGAGCTCTGGAAAAAATCTAATAGGA
* * * *
51159216 TAACTAATTAGATTTAGTGGGGGTAATGGGCA-TTTTTTT-AAA-TTTTAATTAATTAAAATATT
261 TAACTAATCAGATTTAGTAGAGGTAATGGGCAGTTTTTTTAAAAGTTTTAATTAATTAAAAGATT
* * * * * *
51159278 TATTTCCCAAAA-TTTCCCTACTCTCCATATCACGTCCAATTTCCCACTTCCTCATCTTTTCTAT
326 TACTTCCCAAAATTTTCCCCACTCTCCATACCACGTCCAACTTCCCACTTCCCCATCTTTCCTAT
51159342 T-TTCCTGTTTTCTTTCTTTCTTTCTCTTTCCTTTTC-TTT-TTG-TTCTATTCCAAATTTTCTC
391 TATT-CTGTTTT-TTTCTTTCTTTCTCTTTCCTTTTCTTTTGTTGATTCTATTCCAAATTTTCTC
* * * * *
51159403 CTACAATTTTTGGAATTAATTTTGCCATTGTAGTGTTCTGTTTTTGGGTGTTTTCCATTGTTATG
454 CCACAATTTCTGGAATTAATTTTGCCATTGTAGTGTTCCGTTTTTAGGTGTTTTCCATTGTCATG
**
51159468 TGTTTGTCTTCTGGTAAGTGTATCATTACTTGTTATGGGAGCAATTTTTATCATTCTTAGTCTGT
519 TGTTCATCTTCTGGTAAGTGTATCATTACTTGTTATGGGAGCAATTTTTATCATTCTTAGTCTGT
* ** *
51159533 TTCAAAGGACGAAGGGTGAATTTGTGGGTTGATTATTTGTTTATGTATTGGTTGTGTT-TCGTTG
584 TTCAAAGGACGAAGGGTGAATGTGTGGGTTG-TTATTTGTTTATGTATTAATGGTGTTAT-GTTG
* * *
51159597 TTCTGTGAGAACAATTCTTG-AGTCTTATAACGTTTTTCCAACAGAATAGGTGCTTTGGGGTGGT
647 TTCTGTAAGAACAAAT-TTGAAGTCTTACAACGTTTTTCCAACAGAATAGGTGCTTTGGGGTGGT
* ** * ** * *
51159661 TGTTTCTGTCAAGAGTAAGTGCTTGTATATTAATTTTATGGATTGTTTTTTTTTATGAAATGGAT
711 TGTTTCTATCAAGAGTAAGTGCTCATATATTAATTTTAGGGATTACTTTTTTTTAAGAAATGAAT
51159726 GGTAAAATTGGGTTAACTTGTATTAGTTAATCGATTCAATTT
776 GGTAAAATTGGGTTAACTTGTATTAGTTAATCGATTCAATTT
51159768 GGTGTCATAT
Statistics
Matches: 726, Mismatches: 78, Indels: 25
0.88 0.09 0.03
Matches are distributed among these distances:
921 263 0.36
922 77 0.11
923 5 0.01
925 3 0.00
926 5 0.01
927 55 0.08
928 50 0.07
929 3 0.00
930 7 0.01
932 170 0.23
933 88 0.12
ACGTcount: A:0.25, C:0.15, G:0.19, T:0.42
Consensus pattern (928 bp):
CTAGCCACACGACCGTGCAACCCATCCACATGGCTTAAAGTATCACATCCCAAAAAACAGGTTAG
AAAAAATTGGACTAGTGAAACCAAGAGTGGTCACGTCATAATTTTAAGTTATGATTGTGAAAATG
TTATCAAGTGAATTGATCTACTTCAGTGGTTAAAAGCTCTGGATGTGTGGTTGAGGTCCTATGTT
CAAACCACCGTGTGTGCATAATGGAATTATTTTTCATTTTGAGCTCTGGAAAAAATCTAATAGGA
TAACTAATCAGATTTAGTAGAGGTAATGGGCAGTTTTTTTAAAAGTTTTAATTAATTAAAAGATT
TACTTCCCAAAATTTTCCCCACTCTCCATACCACGTCCAACTTCCCACTTCCCCATCTTTCCTAT
TATTCTGTTTTTTTCTTTCTTTCTCTTTCCTTTTCTTTTGTTGATTCTATTCCAAATTTTCTCCC
ACAATTTCTGGAATTAATTTTGCCATTGTAGTGTTCCGTTTTTAGGTGTTTTCCATTGTCATGTG
TTCATCTTCTGGTAAGTGTATCATTACTTGTTATGGGAGCAATTTTTATCATTCTTAGTCTGTTT
CAAAGGACGAAGGGTGAATGTGTGGGTTGTTATTTGTTTATGTATTAATGGTGTTATGTTGTTCT
GTAAGAACAAATTTGAAGTCTTACAACGTTTTTCCAACAGAATAGGTGCTTTGGGGTGGTTGTTT
CTATCAAGAGTAAGTGCTCATATATTAATTTTAGGGATTACTTTTTTTTAAGAAATGAATGGTAA
AATTGGGTTAACTTGTATTAGTTAATCGATTCAATTTTGGGTTTGATTCTGACATGGCCTAAGAC
CCTCCACATGGCCTCCCATACAGTTGTGCCTATCGTGAAGCCTAATTTTGTGTGTCCCACACAGC
CACAGTCTGTTCTATGGC
Found at i:51160329 original size:37 final size:37
Alignment explanation
Indices: 51160288--51160358 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
51160278 GATTTGCTAA
51160288 ACCATATGTGTTACACGTAATCTGTTATCTGTTCATT
1 ACCATATGTGTTACACGTAATCTGTTATCTGTTCATT
*
51160325 ACCATATGTGTTATACGTAATCTGTTATCTGTTC
1 ACCATATGTGTTACACGTAATCTGTTATCTGTTC
51160359 TTATAAGCTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.24, C:0.18, G:0.14, T:0.44
Consensus pattern (37 bp):
ACCATATGTGTTACACGTAATCTGTTATCTGTTCATT
Found at i:51167507 original size:24 final size:24
Alignment explanation
Indices: 51167459--51167512 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
51167449 TTTTAAAAAT
*
51167459 ATAATAATAAATTTAAATTGTATA
1 ATAATAATAAATTTAAATTGAATA
51167483 ATAATAAT-AATATTAATATT-AATA
1 ATAATAATAAAT-TTAA-ATTGAATA
51167507 A-AATAA
1 ATAATAA
51167513 AAGAAATCCT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 8 0.30
24 16 0.59
25 3 0.11
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (24 bp):
ATAATAATAAATTTAAATTGAATA
Found at i:51173449 original size:26 final size:26
Alignment explanation
Indices: 51173420--51173472 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
51173410 TCAAACATGC
51173420 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
51173446 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
51173472 A
1 A
51173473 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:51174995 original size:26 final size:26
Alignment explanation
Indices: 51174957--51175014 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
51174947 CATGAAATTC
51174957 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
51174983 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
51175009 TTATCA
1 TTATCA
51175015 ATTTGTATCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.36, C:0.26, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:51179428 original size:41 final size:41
Alignment explanation
Indices: 51179372--51179616 Score: 340
Period size: 41 Copynumber: 6.0 Consensus size: 41
51179362 AAAATCGAAT
*
51179372 AGATC-GAGCATTAGCGGCGTTTTTAACAAAGCGCCGCTAA
1 AGATCTGAGCATTAGCGGCGTTTTTAAGAAAGCGCCGCTAA
*
51179412 AGATCTGAGCATTAGCGGCGTTTTTAGGAAAGCGCCGCTAA
1 AGATCTGAGCATTAGCGGCGTTTTTAAGAAAGCGCCGCTAA
* *
51179453 AGATCTG-GACATTAGCGACGTTTTTAGGAAAGCGCCGCTAA
1 AGATCTGAG-CATTAGCGGCGTTTTTAAGAAAGCGCCGCTAA
* *
51179494 AGATCTG-GACATTAGCGGCGTTTTTAGGAAAGCGCCACTAA
1 AGATCTGAG-CATTAGCGGCGTTTTTAAGAAAGCGCCGCTAA
* *
51179535 AGATCTGGGCATTAGCGGCGTTTTTAAAAAAGCGCCGCTAA
1 AGATCTGAGCATTAGCGGCGTTTTTAAGAAAGCGCCGCTAA
51179576 AGATC-GAGCATTAGCGGCGCTTTTTTAA-AAA-CGCCGCTAA
1 AGATCTGAGCATTAGCGGCG--TTTTTAAGAAAGCGCCGCTAA
51179616 A
1 A
51179617 AGATTAAGCA
Statistics
Matches: 191, Mismatches: 9, Indels: 10
0.91 0.04 0.05
Matches are distributed among these distances:
40 29 0.15
41 154 0.81
42 8 0.04
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.24
Consensus pattern (41 bp):
AGATCTGAGCATTAGCGGCGTTTTTAAGAAAGCGCCGCTAA
Found at i:51180180 original size:7 final size:7
Alignment explanation
Indices: 51180170--51180296 Score: 57
Period size: 7 Copynumber: 17.9 Consensus size: 7
51180160 ACTATTTAAA
51180170 GGTTTAG
1 GGTTTAG
51180177 GGTTTATG
1 GGTTTA-G
51180185 GGTTTAG
1 GGTTTAG
*
51180192 GGATTA-
1 GGTTTAG
* *
51180198 TGTTTAC
1 GGTTTAG
* *
51180205 GGCTTAT
1 GGTTTAG
51180212 GGTTTAAG
1 GGTTT-AG
*
51180220 GG-TTGG
1 GGTTTAG
51180226 GGTTTAAG
1 GGTTT-AG
51180234 GG-TTATG
1 GGTTTA-G
*
51180241 GG-CTAG
1 GGTTTAG
*
51180247 TGGTTAAG
1 -GGTTTAG
51180255 GGTTTATG
1 GGTTTA-G
51180263 GG-TTATG
1 GGTTTA-G
* *
51180270 GGTTAAT
1 GGTTTAG
51180277 GGTTTAG
1 GGTTTAG
*
51180284 GGTTTAA
1 GGTTTAG
51180291 GGTTTA
1 GGTTTA
51180297 AAGGTTTTTA
Statistics
Matches: 91, Mismatches: 19, Indels: 20
0.70 0.15 0.15
Matches are distributed among these distances:
6 9 0.10
7 62 0.68
8 20 0.22
ACGTcount: A:0.18, C:0.02, G:0.38, T:0.42
Consensus pattern (7 bp):
GGTTTAG
Found at i:51180265 original size:29 final size:29
Alignment explanation
Indices: 51180225--51180292 Score: 100
Period size: 29 Copynumber: 2.3 Consensus size: 29
51180215 TTAAGGGTTG
*
51180225 GGGTTTAAGGGTTATGGGCTAGTGGTTAA
1 GGGTTTAAGGGTTATGGGCTAATGGTTAA
* * *
51180254 GGGTTTATGGGTTATGGGTTAATGGTTTA
1 GGGTTTAAGGGTTATGGGCTAATGGTTAA
51180283 GGGTTTAAGG
1 GGGTTTAAGG
51180293 TTTAAAGGTT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.19, C:0.01, G:0.41, T:0.38
Consensus pattern (29 bp):
GGGTTTAAGGGTTATGGGCTAATGGTTAA
Found at i:51180340 original size:14 final size:14
Alignment explanation
Indices: 51180321--51180366 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
51180311 GTGGTTTAAG
51180321 GTTTAGGGGATATA
1 GTTTAGGGGATATA
* *
51180335 GTTTAGGGTACTTTA
1 GTTTAGGGGA-TATA
51180350 G--TAGGGGATATA
1 GTTTAGGGGATATA
51180362 GTTTA
1 GTTTA
51180367 ATGATTTAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 6
0.71 0.11 0.17
Matches are distributed among these distances:
12 4 0.16
13 6 0.24
14 11 0.44
15 4 0.16
ACGTcount: A:0.26, C:0.02, G:0.33, T:0.39
Consensus pattern (14 bp):
GTTTAGGGGATATA
Found at i:51180573 original size:28 final size:28
Alignment explanation
Indices: 51180536--51180640 Score: 73
Period size: 28 Copynumber: 3.9 Consensus size: 28
51180526 TAGGGGATAT
*
51180536 ATATACTTTAGAGTTTAAGGTTAGAGGG
1 ATATAGTTTAGAGTTTAAGGTTAGAGGG
*
51180564 ATATAGTTTAGGGTTT-A---T---GGG
1 ATATAGTTTAGAGTTTAAGGTTAGAGGG
* * * *
51180585 ATATATTTTAGGGTTTAAGGTTATAAGG
1 ATATAGTTTAGAGTTTAAGGTTAGAGGG
51180613 ATATAGTTTA-ATGGTTTAAGGTTTAGAG
1 ATATAGTTTAGA--GTTTAAGG-TTAGAG
51180641 TATTGATTAA
Statistics
Matches: 59, Mismatches: 8, Indels: 18
0.69 0.09 0.21
Matches are distributed among these distances:
21 18 0.31
22 1 0.02
24 1 0.02
25 1 0.02
27 1 0.02
28 25 0.42
29 8 0.14
30 4 0.07
ACGTcount: A:0.30, C:0.01, G:0.28, T:0.41
Consensus pattern (28 bp):
ATATAGTTTAGAGTTTAAGGTTAGAGGG
Found at i:51180585 original size:21 final size:21
Alignment explanation
Indices: 51180561--51180601 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
51180551 TAAGGTTAGA
51180561 GGGATATAGTTTAGGGTTTAT
1 GGGATATAGTTTAGGGTTTAT
*
51180582 GGGATATATTTTAGGGTTTA
1 GGGATATAGTTTAGGGTTTA
51180602 AGGTTATAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.44
Consensus pattern (21 bp):
GGGATATAGTTTAGGGTTTAT
Found at i:51180615 original size:49 final size:51
Alignment explanation
Indices: 51180509--51180622 Score: 160
Period size: 49 Copynumber: 2.2 Consensus size: 51
51180499 TATGGTTAGG
*
51180509 GGATATAGTTTAGGGTTTAGGGGATATATATACTTTAGAGTTTAAGGTTAGAG
1 GGATATAGTTTAGGGTTTAGGGGA-ATATATA-TTTAGAGTTTAAGGTTAGAA
* * *
51180562 GGATATAGTTTAGGGTTTATGGG-ATATAT-TTTAGGGTTTAAGGTTATAA
1 GGATATAGTTTAGGGTTTAGGGGAATATATATTTAGAGTTTAAGGTTAGAA
51180611 GGATATAGTTTA
1 GGATATAGTTTA
51180623 ATGGTTTAAG
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
49 29 0.51
51 6 0.11
53 22 0.39
ACGTcount: A:0.30, C:0.01, G:0.29, T:0.40
Consensus pattern (51 bp):
GGATATAGTTTAGGGTTTAGGGGAATATATATTTAGAGTTTAAGGTTAGAA
Found at i:51180634 original size:256 final size:252
Alignment explanation
Indices: 51180355--51180825 Score: 811
Period size: 256 Copynumber: 1.9 Consensus size: 252
51180345 CTTTAGTAGG
51180355 GGATATAGTTTAATGATTTAAGGTTTAGAGTATTGATTAATTAGTGTTATTATTTTGTGGTTTAA
1 GGATATAGTTTAATGATTTAAGGTTTAGAGTATTGATTAATTAGTGTTATTATTTTGTGGTTTAA
51180420 GGATC-AAGAGATATAGTTTAGGGTTATGATTAATTCATACATTTTGTGGTTAAGGCTTAGGGGT
66 GGATCAAAG-GATATAGTTTAGGGTTATGATTAATTCATACATTTTGTGGTTAAGGCTTAGGGGT
*
51180484 TATTATTTTATGGGTTATGGTTAGGGGATATAGTTTAGGGTTTAGGGGATATATATACTTTA-GA
130 TATTATTTTATGGGTTATGGTTAGGGGATATAGTTTAGGGTTTAGAGG----ATATACTTTACG-
51180548 GTTTAAGGTTAGAGGGATATAGTTTAGGGTTTATGGGATATATTTTAGGGTTTAAGGTTATAA
190 GTTTAAGGTTAGAGGGATATAGTTTAGGGTTTATGGGATATATTTTAGGGTTTAAGGTTATAA
*
51180611 GGATATAGTTTAATGGTTTAAGGTTTAGAGTATTGATTAATTAGTGTTATTATTTTGTGGTTTAA
1 GGATATAGTTTAATGATTTAAGGTTTAGAGTATTGATTAATTAGTGTTATTATTTTGTGGTTTAA
51180676 GGATCAAAGGATATAGTTTAGGGTTATGATTAATTCATACATTTTGTGGTTAAGGCTTAGGGGTT
66 GGATCAAAGGATATAGTTTAGGGTTATGATTAATTCATACATTTTGTGGTTAAGGCTTAGGGGTT
* * * *
51180741 ATTGTTTTGTGGTTTATGGTTAGGGGATATAGTTTAGGTTTTAGAGGATATACTTTACGGTTTAA
131 ATTATTTTATGGGTTATGGTTAGGGGATATAGTTTAGGGTTTAGAGGATATACTTTACGGTTTAA
*
51180806 GGTTATAGGGATATAGTTTA
196 GGTTAGAGGGATATAGTTTA
51180826 ATGGTTTAAG
Statistics
Matches: 206, Mismatches: 7, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
252 35 0.17
253 1 0.00
256 167 0.81
257 3 0.01
ACGTcount: A:0.27, C:0.02, G:0.27, T:0.44
Consensus pattern (252 bp):
GGATATAGTTTAATGATTTAAGGTTTAGAGTATTGATTAATTAGTGTTATTATTTTGTGGTTTAA
GGATCAAAGGATATAGTTTAGGGTTATGATTAATTCATACATTTTGTGGTTAAGGCTTAGGGGTT
ATTATTTTATGGGTTATGGTTAGGGGATATAGTTTAGGGTTTAGAGGATATACTTTACGGTTTAA
GGTTAGAGGGATATAGTTTAGGGTTTATGGGATATATTTTAGGGTTTAAGGTTATAA
Found at i:51180763 original size:28 final size:28
Alignment explanation
Indices: 51180717--51180775 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
51180707 AATTCATACA
* *
51180717 TTTTGTGGTTAAGGCTTAGGGGTTATTG
1 TTTTGTGGTTAAGGCTTAGGGGATATAG
*
51180745 TTTTGTGGTTTATGG-TTAGGGGATATAG
1 TTTTGTGG-TTAAGGCTTAGGGGATATAG
51180773 TTT
1 TTT
51180776 AGGTTTTAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 22 0.81
29 5 0.19
ACGTcount: A:0.15, C:0.02, G:0.34, T:0.49
Consensus pattern (28 bp):
TTTTGTGGTTAAGGCTTAGGGGATATAG
Found at i:51180789 original size:21 final size:22
Alignment explanation
Indices: 51180760--51180803 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
51180750 TGGTTTATGG
* *
51180760 TTAGGGGATATAGTTTA-GGTT
1 TTAGAGGATATACTTTACGGTT
51180781 TTAGAGGATATACTTTACGGTT
1 TTAGAGGATATACTTTACGGTT
51180803 T
1 T
51180804 AAGGTTATAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.25, C:0.05, G:0.27, T:0.43
Consensus pattern (22 bp):
TTAGAGGATATACTTTACGGTT
Found at i:51180809 original size:29 final size:30
Alignment explanation
Indices: 51180772--51180843 Score: 89
Period size: 29 Copynumber: 2.5 Consensus size: 30
51180762 AGGGGATATA
51180772 GTTT-AGGTTTTAGAGGATATACTTT-ACG
1 GTTTAAGGTTTTAGAGGATATACTTTAACG
* * *
51180800 GTTTAAGGTTATAG-GGATATAGTTTAATG
1 GTTTAAGGTTTTAGAGGATATACTTTAACG
51180829 GTTTAAGG-TTTAGAG
1 GTTTAAGGTTTTAGAG
51180844 TTTTGATTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
28 18 0.49
29 19 0.51
ACGTcount: A:0.28, C:0.03, G:0.28, T:0.42
Consensus pattern (30 bp):
GTTTAAGGTTTTAGAGGATATACTTTAACG
Found at i:51182297 original size:44 final size:45
Alignment explanation
Indices: 51182202--51182324 Score: 131
Period size: 44 Copynumber: 2.7 Consensus size: 45
51182192 CATAAATGAT
* * *
51182202 CCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAAGATTGAG
1 CCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAAGAATAAG
* * *
51182248 CCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGGAATAAT
1 CCATGTAAGTCCATATTAAAATATGGCATTGGAGACAAGAATAAG
* * * *
51182292 TCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 CCATGTAAGTCCATATTAAA-ATATGGCATTGG
51182325 CAGGATATTG
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
44 35 0.55
45 1 0.02
46 28 0.44
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (45 bp):
CCATGTAAGTCCATATTAAAATATGGCATTGGAGACAAGAATAAG
Found at i:51183920 original size:6 final size:6
Alignment explanation
Indices: 51183909--51183938 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
51183899 TGACTTTCTC
51183909 CCCTCT CCCTCT CCCTCT CCCTCT CCCTCT
1 CCCTCT CCCTCT CCCTCT CCCTCT CCCTCT
51183939 TTCTGTCTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33
Consensus pattern (6 bp):
CCCTCT
Found at i:51185715 original size:14 final size:13
Alignment explanation
Indices: 51185692--51185721 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
51185682 ATTACTATAA
51185692 TAATTATATGAAG
1 TAATTATATGAAG
51185705 TAATATATATGAAG
1 TAAT-TATATGAAG
51185719 TAA
1 TAA
51185722 AATTATATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (13 bp):
TAATTATATGAAG
Found at i:51186106 original size:183 final size:183
Alignment explanation
Indices: 51185792--51186160 Score: 702
Period size: 183 Copynumber: 2.0 Consensus size: 183
51185782 GATATAGTTC
51185792 CATGTGTCTGTACTAGTGAATTAATGTTGTATGTATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
1 CATGTGTCTGTACTAGTGAATTAATGTTGTATGTATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
* *
51185857 ACTATTGTTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATATATAAA
66 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
51185922 GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
131 GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
*
51185975 CATGTGTCTGTATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
1 CATGTGTCTGTACTAGTGAATTAATGTTGTATGTATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
51186040 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
66 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
*
51186105 GTTTTTATATTTGTTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
131 GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
51186158 CAT
1 CAT
51186161 CTGTTCTAGG
Statistics
Matches: 182, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
183 182 1.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.43
Consensus pattern (183 bp):
CATGTGTCTGTACTAGTGAATTAATGTTGTATGTATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
Found at i:51187148 original size:53 final size:49
Alignment explanation
Indices: 51187051--51187155 Score: 120
Period size: 53 Copynumber: 2.1 Consensus size: 49
51187041 GAAGGGCCAC
** *
51187051 TTATAAATAATTTTATCAATATAATAATATTGATCACTGTTTAAATATA
1 TTATAAATAATTTTATCAATATAATAATATTGATCACTACTTAAATAAA
* * *
51187100 TTATAACTAATTTTTATCAAAATAGTATTAATATTGATCATTACTTAAATAAA
1 TTATAAATAA-TTTTATC--AATA-TAATAATATTGATCACTACTTAAATAAA
51187153 TTA
1 TTA
51187156 CATAACTCAC
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
49 9 0.20
50 7 0.15
52 4 0.09
53 26 0.57
ACGTcount: A:0.45, C:0.07, G:0.04, T:0.45
Consensus pattern (49 bp):
TTATAAATAATTTTATCAATATAATAATATTGATCACTACTTAAATAAA
Found at i:51189782 original size:19 final size:19
Alignment explanation
Indices: 51189754--51189797 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
51189744 TATCCAATTG
*
51189754 AAAGGTGCTAATTTATTTC
1 AAAGGCGCTAATTTATTTC
51189773 AAAGGCGCTAATTTATTTC
1 AAAGGCGCTAATTTATTTC
51189792 AAAGGC
1 AAAGGC
51189798 ATTCCACCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (19 bp):
AAAGGCGCTAATTTATTTC
Found at i:51193869 original size:40 final size:39
Alignment explanation
Indices: 51193825--51194008 Score: 165
Period size: 40 Copynumber: 4.6 Consensus size: 39
51193815 AAGTGAATAT
* * *
51193825 ATCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAG
1 ATCCGGA-TAAG-TCCCGAAGGCATTCGTGCGAGATACTAA
* *
51193865 ATCCGGGATAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
1 ATCC-GGATAAGTCCCGAAGGCATTCGTGCGAGATACTAA
* * **
51193905 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCC-GGATAAGTCCCGAAGGCATTCGTGCGAGATACTAA
* * *
51193945 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGATACTAA
1 ATCC-GGATAAGTCCCGAAGGCATTCGTGCGAGATACTAA
* * *
51193984 AACCGGGCTATGTCCCGAAGGCATT
1 ATCC-GGATAAGTCCCGAAGGCATT
51194009 TGAACGAGGA
Statistics
Matches: 128, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 34 0.27
40 91 0.71
41 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
ATCCGGATAAGTCCCGAAGGCATTCGTGCGAGATACTAA
Found at i:51193935 original size:80 final size:79
Alignment explanation
Indices: 51193839--51194008 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
51193829 GGACTAAGAT
* * * * *
51193839 CCGAAGGCCTTTGTGCGAGATACTAGATCCGGGATAAGTCCCGAAGGCATTCGTGCGAGTTATTA
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGATAAGTCCCGAAGGCATT-GTGCGAGATACTA
* *
51193904 AATCCGGGTTAAGTC
65 AAACCGGGCTAAGTC
* ** * * *
51193919 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGATACTAA
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGATAAGTCCCGAAGGCATTGTGCGAGATACTAA
*
51193984 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
51193998 CCGAAGGCATT
1 CCGAAGGCATT
51194009 TGAACGAGGA
Statistics
Matches: 76, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
79 33 0.43
80 43 0.57
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTCGTGCGAGATACTAAATCCGGGATAAGTCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:51194028 original size:79 final size:80
Alignment explanation
Indices: 51193865--51194043 Score: 200
Period size: 79 Copynumber: 2.3 Consensus size: 80
51193855 GAGATACTAG
* * * * *
51193865 ATCCGGGATAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
51193930 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
51193945 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGATACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
51194009 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
51194024 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
51194044 TACGTGATTT
Statistics
Matches: 82, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 14 0.17
79 45 0.55
80 23 0.28
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:51196259 original size:41 final size:42
Alignment explanation
Indices: 51196179--51196260 Score: 139
Period size: 44 Copynumber: 1.9 Consensus size: 42
51196169 GCAAAACTGG
51196179 GCAAATTAGCGGCGTTTTTTAAAAAAAGCGCCGCTAAAAGTACT
1 GCAAATTAGCGGCGTTTTTT--AAAAAGCGCCGCTAAAAGTACT
51196223 GCAAATTAGCGGCGTTTTTT-AAAAGCGCCGCTAAAAGT
1 GCAAATTAGCGGCGTTTTTTAAAAAGCGCCGCTAAAAGT
51196261 CTTGGCCTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
41 18 0.47
44 20 0.53
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (42 bp):
GCAAATTAGCGGCGTTTTTTAAAAAGCGCCGCTAAAAGTACT
Done.