Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 156 of 310
Found at i:51196387 original size:43 final size:45
Alignment explanation
Indices: 51196335--51196438 Score: 133
Period size: 43 Copynumber: 2.4 Consensus size: 45
51196325 TCGCTTTTAG
* *
51196335 AAAAACGCCGCTAAATGTCTTGG-TCTTTAGCGGCG-TTTTTT-AA
1 AAAAACGCCGCTAAA-GACTAGGATCTTTAGCGGCGCTTTTTTCAA
* * *
51196378 GAAAGCGCCGCTAAAGACTAGGATTTTTAGCGGCGCTTTTTTCAA
1 AAAAACGCCGCTAAAGACTAGGATCTTTAGCGGCGCTTTTTTCAA
51196423 AAAAACGCCGCTAAAG
1 AAAAACGCCGCTAAAG
51196439 GCAAAAAAAA
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
42 5 0.10
43 24 0.47
44 6 0.12
45 16 0.31
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (45 bp):
AAAAACGCCGCTAAAGACTAGGATCTTTAGCGGCGCTTTTTTCAA
Found at i:51196901 original size:17 final size:17
Alignment explanation
Indices: 51196879--51196916 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
51196869 CATTTTTATT
51196879 ATAAAAATAAATTAGTA
1 ATAAAAATAAATTAGTA
* *
51196896 ATAAAATTATATTAGTA
1 ATAAAAATAAATTAGTA
51196913 ATAA
1 ATAA
51196917 CTGAAGCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (17 bp):
ATAAAAATAAATTAGTA
Found at i:51203428 original size:25 final size:23
Alignment explanation
Indices: 51203410--51203476 Score: 64
Period size: 24 Copynumber: 2.7 Consensus size: 23
51203400 AAATAGATAT
51203410 TATAACAAGCAATTTAAATGAATAG
1 TATAA-AA-CAATTTAAATGAATAG
*
51203435 TATAAAACAATTTAAAAT-AATTAA
1 TATAAAACAATTT-AAATGAA-TAG
51203459 TATACAAAACAATTTAAA
1 TAT--AAAACAATTTAAA
51203477 ATAAAATAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
23 8 0.22
24 11 0.30
25 8 0.22
26 10 0.27
ACGTcount: A:0.58, C:0.07, G:0.04, T:0.30
Consensus pattern (23 bp):
TATAAAACAATTTAAATGAATAG
Found at i:51203506 original size:46 final size:46
Alignment explanation
Indices: 51203436--51203526 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 46
51203426 AATGAATAGT
* *
51203436 ATAAAACAATTTAAAATAATTAATATACAAAACAATTTAAAATAAA
1 ATAAAACAACTTAAAATAAATAATATACAAAACAATTTAAAATAAA
* * *
51203482 ATAAAGCAACTTAAAATAAATAATATATATAACAATTTAAAATAA
1 ATAAAACAACTTAAAATAAATAATATACAAAACAATTTAAAATAA
51203527 CATATAGAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.64, C:0.07, G:0.01, T:0.29
Consensus pattern (46 bp):
ATAAAACAACTTAAAATAAATAATATACAAAACAATTTAAAATAAA
Found at i:51203526 original size:26 final size:24
Alignment explanation
Indices: 51203325--51203757 Score: 153
Period size: 26 Copynumber: 17.7 Consensus size: 24
51203315 CAAAAGAAAT
* *
51203325 AAATAAATAACATAAAACCATTTA
1 AAATAAATAATATAAAACAATTTA
* * * *
51203349 GAATAAAT-A-ATGAGACAATTTT
1 AAATAAATAATATAAAACAATTTA
*
51203371 AAATAAATAATACATAAAAAATAAGTTTA
1 AAATAAATAAT--AT--AAAACAA-TTTA
* *
51203400 AAATAGATATTATAACAAGCAATTT-
1 AAATAAATAATATAA-AA-CAATTTA
* *
51203425 AAATGAATAGTATAAAACAATTTA
1 AAATAAATAATATAAAACAATTTA
*
51203449 AAATAATTAATATACAAAACAATTTA
1 AAATAAATAATAT--AAAACAATTTA
* *
51203475 AAAT--A-AA-ATAAAGCAACTTA
1 AAATAAATAATATAAAACAATTTA
51203495 AAATAAATAATATATATAACAATTTA
1 AAATAAATAATATA-A-AACAATTTA
* * * *
51203521 AAAT-AA-CATATAGAA-AGTCTA
1 AAATAAATAATATAAAACAATTTA
* * *
51203542 GAATGAATAATATGTAAAAAGAAATTTA
1 AAATAAATAATA--T-AAAA-CAATTTA
* * *
51203570 AAATAAATAATAAAAAATAGTTTA
1 AAATAAATAATATAAAACAATTTA
* * *
51203594 ATATAAATAATAT-ATATAA---A
1 AAATAAATAATATAAAACAATTTA
* *
51203614 AAATAAATAATGTATAAAAGAGTTTA
1 AAATAAATAA--TATAAAACAATTTA
* * *
51203640 AGATAAATAA-ATAAAAAAATGTA
1 AAATAAATAATATAAAACAATTTA
* * *
51203663 AAGA-AATTAATATATAAAATAATTCA
1 AA-ATAAAT-A-ATATAAAACAATTTA
* *
51203689 AAA-CAATATGTATTAAAACAATTTA
1 AAATAAATA-ATA-TAAAACAATTTA
* * *
51203714 AAATGAATACTATAAAAAAATTTTA
1 AAATAAATAATATAAAACAA-TTTA
*
51203739 AAATGAATAACATATAAAA
1 AAATAAAT-A-ATATAAAA
51203758 TAGTTTATAA
Statistics
Matches: 305, Mismatches: 64, Indels: 77
0.68 0.14 0.17
Matches are distributed among these distances:
20 23 0.08
21 7 0.02
22 26 0.09
23 36 0.12
24 56 0.18
25 53 0.17
26 63 0.21
27 11 0.04
28 18 0.06
29 12 0.04
ACGTcount: A:0.61, C:0.05, G:0.06, T:0.29
Consensus pattern (24 bp):
AAATAAATAATATAAAACAATTTA
Found at i:51203583 original size:24 final size:24
Alignment explanation
Indices: 51203556--51203605 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
51203546 GAATAATATG
51203556 TAAAAAGA-AATTTAAAATAAATAA
1 TAAAAA-ATAATTTAAAATAAATAA
* *
51203580 TAAAAAATAGTTTAATATAAATAA
1 TAAAAAATAATTTAAAATAAATAA
51203604 TA
1 TA
51203606 TATATAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 1 0.04
24 22 0.96
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (24 bp):
TAAAAAATAATTTAAAATAAATAA
Found at i:51203735 original size:24 final size:27
Alignment explanation
Indices: 51203702--51203757 Score: 82
Period size: 25 Copynumber: 2.2 Consensus size: 27
51203692 CAATATGTAT
*
51203702 TAAAACAA-TTTAAAATGAAT-AC-TA
1 TAAAAAAATTTTAAAATGAATAACATA
51203726 TAAAAAAATTTTAAAATGAATAACATA
1 TAAAAAAATTTTAAAATGAATAACATA
51203753 TAAAA
1 TAAAA
51203758 TAGTTTATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 7 0.25
25 12 0.43
26 2 0.07
27 7 0.25
ACGTcount: A:0.62, C:0.05, G:0.04, T:0.29
Consensus pattern (27 bp):
TAAAAAAATTTTAAAATGAATAACATA
Found at i:51205698 original size:45 final size:45
Alignment explanation
Indices: 51205502--51205928 Score: 216
Period size: 44 Copynumber: 9.6 Consensus size: 45
51205492 TTTAATCTAT
* * * ** ** *
51205502 TCCATTGCACCTTCAGGGAAATAAGATTCGCTAAATTCAGTTTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTTACTATCTTCAGTCTGC
* * * * * * ** *
51205547 TTCACTGCAACTTTATGGAGATAAGACTT-GTAACTTCAACCTAC
1 TCCACTGCAACTTCAGGGAGATAAGATTTACTATCTTCAGTCTGC
* * *
51205591 TCCACTGTAACTTCAGGGAGATAAG-GTT-CT-TGGCTTTCA-TCTAC
1 TCCACTGCAACTTCAGGGAGATAAGATTTACTAT--C-TTCAGTCTGC
* *
51205635 TCCACTGCAACTTCAGGGAGATAAGATTTACTATATTCAGTCTGT
1 TCCACTGCAACTTCAGGGAGATAAGATTTACTATCTTCAGTCTGC
* * *
51205680 TCCACTGCAACTTTAGGGAAATAAGACTTGTA--AT-TTCA-ACATGC
1 TCCACTGCAACTTCAGGGAGATAAGA-TT-TACTATCTTCAGTC-TGC
* * * * * *
51205724 TCTACTGCAACTTCAGGGAGCTAAGGTTT-GTAGCTTCAATCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTTACTATCTTCAGTCTGC
* ** * * *
51205768 TCTACTGCAACTTCAGAAAGATAAGATTTGCTATCTTTAGTCTGT
1 TCCACTGCAACTTCAGGGAGATAAGATTTACTATCTTCAGTCTGC
* * * * * **
51205813 TCCACTACAACTTCAGGAAGATAAGA-CT-CGTAACTTAAACCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTTAC-TATCTTCAGTCTGC
* * * ** * * *
51205857 CCCACTGCAACTTCAGGG-GTATAGGATTT-GTGGCTTTAATATGC
1 TCCACTGCAACTTCAGGGAG-ATAAGATTTACTATCTTCAGTCTGC
51205901 TCCACTGCAACTTCAGGGAGATAAGATT
1 TCCACTGCAACTTCAGGGAGATAAGATT
51205929 CGCCATAATA
Statistics
Matches: 294, Mismatches: 69, Indels: 39
0.73 0.17 0.10
Matches are distributed among these distances:
42 1 0.00
43 9 0.03
44 185 0.63
45 92 0.31
46 4 0.01
47 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (45 bp):
TCCACTGCAACTTCAGGGAGATAAGATTTACTATCTTCAGTCTGC
Found at i:51205736 original size:133 final size:131
Alignment explanation
Indices: 51205485--51205928 Score: 507
Period size: 133 Copynumber: 3.3 Consensus size: 131
51205475 GATTTGTAAC
* * * * * * * *
51205485 TTGTAGCTTTAATCTATTCCATTGCACCTTCAGGGAAATAAGATTCGCTAAATTCAGTTTGCTT-
1 TTGTGGCTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGCTATATTCAGTCTG-TTC
* * *
51205549 CACTGCAACTTTATGGAGATAAGACTTGTAACTTCAACCTACTCCACTGTAACTTCAGGGAGATA
65 CACTGCAACTTTA-GGAAATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAG-TA
51205614 AGGT
128 AGGT
* *
51205618 TCT-TGGCTTTCATCTACTCCACTGCAACTTCAGGGAGATAAGATTTACTATATTCAGTCTGTTC
1 T-TGTGGCTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGCTATATTCAGTCTGTTC
* * *
51205682 CACTGCAACTTTAGGGAAATAAGACTTGTAATTTCAACATGCTCTACTGCAACTTCAGGGAGCTA
65 CACTGCAACTTTA-GGAAATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAG-TA
51205747 AGGT
128 AGGT
* * * * ** * *
51205751 TTGTAGCTTCAATCTGCTCTACTGCAACTTCAGAAAGATAAGATTTGCTATCTTTAGTCTGTTCC
1 TTGTGGCTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGCTATATTCAGTCTGTTCC
* * * * *
51205816 ACTACAACTTCAGGAAGATAAGACTCGTAACTTAAACCTGCCCCACTGCAACTTCAGGG-GTATA
66 ACTGCAACTTTAGGAA-ATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGTA-A
51205880 GGAT
129 GG-T
* *
51205884 TTGTGGCTTTAATATGCTCCACTGCAACTTCAGGGAGATAAGATT
1 TTGTGGCTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATT
51205929 CGCCATAATA
Statistics
Matches: 263, Mismatches: 42, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
131 2 0.01
132 11 0.04
133 249 0.95
134 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (131 bp):
TTGTGGCTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGCTATATTCAGTCTGTTCC
ACTGCAACTTTAGGAAATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGTAAGG
T
Found at i:51205742 original size:44 final size:43
Alignment explanation
Indices: 51205544--51205926 Score: 229
Period size: 44 Copynumber: 8.7 Consensus size: 43
51205534 AAATTCAGTT
* * * *
51205544 TGCTTCACTGCAACTTTATGGAGATAAGACTTGTAACTTCAACC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAATTTCAA-C
* * * ** *
51205588 TACTCCACTGTAACTTCAGGGAGATAAGGTTCTTG-GCTTTCATC
1 TGCTCCACTGCAACTTCAGGGAGATAA-G-ACTTGTAATTTCAAC
* *
51205632 TACTCCACTGCAACTTCAGGGAGATAAGA-TT-TACTATATTCAGTC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA--AT-TTCA-AC
* * *
51205677 TGTTCCACTGCAACTTTAGGGAAATAAGACTTGTAATTTCAAC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAATTTCAAC
* * ** **
51205720 ATGCTCTACTGCAACTTCAGGGAGCTAAGGTTTGTAGCTTCAATC
1 -TGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAATTTCAA-C
* ** * * *
51205765 TGCTCTACTGCAACTTCAGAAAGATAAGATTTGCT-ATCTTTAGTC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TAAT-TTCA-AC
* * * * * *
51205810 TGTTCCACTACAACTTCAGGAAGATAAGACTCGTAACTTAAACC
1 TGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAATTTCAA-C
* * * ** *
51205854 TGCCCCACTGCAACTTCAGGG-GTATAGGATTTGTGGCTTT-AATA
1 TGCTCCACTGCAACTTCAGGGAG-ATAAGACTTGT-AATTTCAA-C
51205898 TGCTCCACTGCAACTTCAGGGAGATAAGA
1 TGCTCCACTGCAACTTCAGGGAGATAAGA
51205927 TTCGCCATAA
Statistics
Matches: 261, Mismatches: 59, Indels: 38
0.73 0.16 0.11
Matches are distributed among these distances:
41 2 0.01
43 4 0.02
44 176 0.67
45 71 0.27
46 6 0.02
47 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (43 bp):
TGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAATTTCAAC
Found at i:51214125 original size:19 final size:20
Alignment explanation
Indices: 51214109--51214155 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
51214099 TTATGAAACT
*
51214109 TAATGCATATG-ATGAAATG
1 TAATGCAAATGAATGAAATG
51214128 TAATGCAAATGAATGAAATG
1 TAATGCAAATGAATGAAATG
51214148 -AATGCAAA
1 TAATGCAAA
51214156 AAGGGGCACT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 18 0.69
20 8 0.31
ACGTcount: A:0.49, C:0.06, G:0.19, T:0.26
Consensus pattern (20 bp):
TAATGCAAATGAATGAAATG
Found at i:51218004 original size:46 final size:48
Alignment explanation
Indices: 51217906--51218014 Score: 132
Period size: 46 Copynumber: 2.3 Consensus size: 48
51217896 TTATAACGAG
* * *
51217906 CAATTTAAAATGAATAGTATAAAACAATTTAAGATAATTAATATACAAAA
1 CAATTTAAAAT-AATAG-ATAAAACAACTTAAAATAAATAATATACAAAA
* * *
51217956 CAATTTAAAATAA-A-ATAAAGCAACTTAAAATAAATAATATATATAA
1 CAATTTAAAATAATAGATAAAACAACTTAAAATAAATAATATACAAAA
51218002 CAATTTAAAATAA
1 CAATTTAAAATAA
51218015 CATGTAGAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
46 39 0.74
48 1 0.02
49 2 0.04
50 11 0.21
ACGTcount: A:0.61, C:0.06, G:0.04, T:0.29
Consensus pattern (48 bp):
CAATTTAAAATAATAGATAAAACAACTTAAAATAAATAATATACAAAA
Found at i:51218011 original size:26 final size:24
Alignment explanation
Indices: 51217812--51218256 Score: 140
Period size: 26 Copynumber: 17.7 Consensus size: 24
51217802 CAAAAGAATG
* *
51217812 AAATAAATAACATAAAACCATTTA
1 AAATAAATAATATAAAACAATTTA
* * *
51217836 AAATAAAT-A-ATGAGACAATTTT
1 AAATAAATAATATAAAACAATTTA
*
51217858 AAATAAATAATACATAAAAAATAAGTTTA
1 AAATAAATAAT--AT--AAAACAA-TTTA
* * *
51217887 AAATAGATATTATAACGAGCAATTTA
1 AAATAAATAATATAA--AACAATTTA
* *
51217913 AAATGAATAGTATAAAACAATTTA
1 AAATAAATAATATAAAACAATTTA
* *
51217937 AGATAATTAATATACAAAACAATTTA
1 AAATAAATAATAT--AAAACAATTTA
* *
51217963 AAAT--A-AA-ATAAAGCAACTTA
1 AAATAAATAATATAAAACAATTTA
51217983 AAATAAATAATATATATAACAATTTA
1 AAATAAATAATATA-A-AACAATTTA
* * * * *
51218009 AAAT-AA-CATGTAGAA-AGTCTA
1 AAATAAATAATATAAAACAATTTA
* * *
51218030 GAATGAATAATATGTAAAAAGAAATTTA
1 AAATAAATAATA--T-AAAA-CAATTTA
*
51218058 AAATAAATAATAAAAATAAAAAACAGTTTA
1 AAATAAATAAT----AT--AAAACAATTTA
* **
51218088 ATATAAATAATATATATAA-AAAATA
1 AAATAAATAATATA-A-AACAATTTA
* * *
51218113 AAATAATTAATGTATAAAAGAGTTTA
1 AAATAAATAA--TATAAAACAATTTA
* *
51218139 AAATAAATAA-ATAAAGCAATGTA
1 AAATAAATAATATAAAACAATTTA
* * * *
51218162 AAGTAATTAAGATATAAAATAATTCA
1 AAATAAAT-A-ATATAAAACAATTTA
* *
51218188 AAAT-AATATGTATTAAAACAGTTTA
1 AAATAAATA-ATA-TAAAACAATTTA
* * *
51218213 AAATGAATACTATAAAAAAATTTTA
1 AAATAAATAATATAAAACAA-TTTA
*
51218238 AAATGAATAACATATAAAA
1 AAATAAAT-A-ATATAAAA
51218257 TAGTTTATAA
Statistics
Matches: 307, Mismatches: 72, Indels: 81
0.67 0.16 0.18
Matches are distributed among these distances:
20 13 0.04
21 7 0.02
22 24 0.08
23 23 0.07
24 43 0.14
25 50 0.16
26 80 0.26
27 16 0.05
28 17 0.06
29 12 0.04
30 16 0.05
31 5 0.02
32 1 0.00
ACGTcount: A:0.60, C:0.05, G:0.07, T:0.29
Consensus pattern (24 bp):
AAATAAATAATATAAAACAATTTA
Found at i:51218088 original size:30 final size:30
Alignment explanation
Indices: 51218054--51218110 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
51218044 TAAAAAGAAA
51218054 TTTAAAATAAATAATAAAAATAAAAAACAG
1 TTTAAAATAAATAATAAAAATAAAAAACAG
* * *
51218084 TTTAATATAAATAATATATATAAAAAA
1 TTTAAAATAAATAATAAAAATAAAAAA
51218111 TAAAATAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (30 bp):
TTTAAAATAAATAATAAAAATAAAAAACAG
Found at i:51218230 original size:25 final size:27
Alignment explanation
Indices: 51218202--51218256 Score: 78
Period size: 25 Copynumber: 2.1 Consensus size: 27
51218192 AATATGTATT
*
51218202 AAAACAGTTTAAAATGAAT-AC-TATA
1 AAAAAAGTTTAAAATGAATAACATATA
*
51218227 AAAAAATTTTAAAATGAATAACATATA
1 AAAAAAGTTTAAAATGAATAACATATA
51218254 AAA
1 AAA
51218257 TAGTTTATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 17 0.65
26 2 0.08
27 7 0.27
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.27
Consensus pattern (27 bp):
AAAAAAGTTTAAAATGAATAACATATA
Found at i:51218263 original size:26 final size:24
Alignment explanation
Indices: 51218201--51218263 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
51218191 TAATATGTAT
*
51218201 TAAAACAGTTTAAAATGAATACTA
1 TAAAAAAGTTTAAAATGAATACTA
*
51218225 TAAAAAAATTTTAAAATGAATAACATA
1 T-AAAAAAGTTTAAAATGAAT-AC-TA
*
51218252 TAAAATAGTTTA
1 TAAAAAAGTTTA
51218264 TAAAAGCTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
24 1 0.03
25 17 0.53
26 11 0.34
27 3 0.09
ACGTcount: A:0.57, C:0.05, G:0.06, T:0.32
Consensus pattern (24 bp):
TAAAAAAGTTTAAAATGAATACTA
Found at i:51227111 original size:17 final size:17
Alignment explanation
Indices: 51227079--51227112 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
51227069 TTCTTCTCCC
*
51227079 TTTTTGTTCACTTTTGG
1 TTTTTGTTCACCTTTGG
*
51227096 TTTTTGTTCCCCTTTGG
1 TTTTTGTTCACCTTTGG
51227113 CCGAATCTTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.03, C:0.18, G:0.18, T:0.62
Consensus pattern (17 bp):
TTTTTGTTCACCTTTGG
Found at i:51227368 original size:21 final size:24
Alignment explanation
Indices: 51227342--51227385 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
51227332 GTTATCGGAT
51227342 TCGTCG-TGG-TAAGTTT-TTGAA
1 TCGTCGTTGGTTAAGTTTCTTGAA
51227363 TCGTCGTTGGTTAAGTTTCTTGA
1 TCGTCGTTGGTTAAGTTTCTTGA
51227386 GTTTTATGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 6 0.30
22 3 0.15
23 7 0.35
24 4 0.20
ACGTcount: A:0.16, C:0.11, G:0.27, T:0.45
Consensus pattern (24 bp):
TCGTCGTTGGTTAAGTTTCTTGAA
Found at i:51231651 original size:14 final size:15
Alignment explanation
Indices: 51231624--51231652 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
51231614 TACCTGGTAA
51231624 TGAGCATACATATTT
1 TGAGCATACATATTT
51231639 TGAGCAT-CATATTT
1 TGAGCATACATATTT
51231653 GTTAGCACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.41
Consensus pattern (15 bp):
TGAGCATACATATTT
Found at i:51235513 original size:18 final size:18
Alignment explanation
Indices: 51235489--51235529 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 18
51235479 CATTTTAATT
*
51235489 ATAAAAAATAAATTAAGTA
1 ATAAAAATTAAATT-AGTA
51235508 ATAAAAATTAAATTAGTA
1 ATAAAAATTAAATTAGTA
51235526 ATAA
1 ATAA
51235530 CTAAATCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (18 bp):
ATAAAAATTAAATTAGTA
Found at i:51240828 original size:12 final size:10
Alignment explanation
Indices: 51240805--51240837 Score: 52
Period size: 9 Copynumber: 3.5 Consensus size: 10
51240795 CATTGGTATT
51240805 TTATTATCTA
1 TTATTATCTA
51240815 TTATTATC-A
1 TTATTATCTA
51240824 TTATTAT-TA
1 TTATTATCTA
51240833 TTATT
1 TTATT
51240838 TATTCATCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 14 0.64
10 8 0.36
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (10 bp):
TTATTATCTA
Found at i:51241097 original size:7 final size:7
Alignment explanation
Indices: 51241085--51241109 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
51241075 GTCTTTGCTA
51241085 TTTTATT
1 TTTTATT
51241092 TTTTATT
1 TTTTATT
51241099 TTTTATT
1 TTTTATT
51241106 TTTT
1 TTTT
51241110 TTTACATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTATT
Found at i:51242683 original size:37 final size:37
Alignment explanation
Indices: 51242624--51242732 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
51242614 AGCTCAGATG
* *
51242624 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
51242661 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
51242698 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
51242733 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:51243003 original size:47 final size:47
Alignment explanation
Indices: 51242895--51243033 Score: 179
Period size: 47 Copynumber: 3.0 Consensus size: 47
51242885 TTTCACACTA
* * * * *
51242895 GCCATTCAGCTTTACCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
51242942 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * **
51242989 GCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
51243034 AAAATCCTAA
Statistics
Matches: 79, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 79 1.00
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:51250633 original size:25 final size:23
Alignment explanation
Indices: 51250596--51250650 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 23
51250586 TACTCTTTTT
*
51250596 AAAAAAAAGAAAAAGAAAAGAAGA
1 AAAAAAAAAAAAAAGAAAAGAA-A
51250620 AAAAAAAACAAAAAAGAAAAGAAA
1 AAAAAAAA-AAAAAAGAAAAGAAA
51250644 AAAAAAA
1 AAAAAAA
51250651 GAGGCCAAGG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 16 0.55
25 13 0.45
ACGTcount: A:0.87, C:0.02, G:0.11, T:0.00
Consensus pattern (23 bp):
AAAAAAAAAAAAAAGAAAAGAAA
Found at i:51251153 original size:49 final size:48
Alignment explanation
Indices: 51251086--51251186 Score: 157
Period size: 49 Copynumber: 2.1 Consensus size: 48
51251076 AAGTTTGCTA
* * *
51251086 TCTTTGATTAATTTATTCGTTTCGAGCTATGCTCTCAATCAATTTCTT
1 TCTTTGATTAACTTATTCGTCTCGAGCTATGCTCTCAATCAATTTCCT
*
51251134 TCTTTGTATTAACTTATTCGTCTCGAGTTATGCTCTCAATCAATTTCCT
1 TCTTTG-ATTAACTTATTCGTCTCGAGCTATGCTCTCAATCAATTTCCT
51251183 TCTT
1 TCTT
51251187 GTCCATTATT
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
48 6 0.12
49 42 0.88
ACGTcount: A:0.20, C:0.21, G:0.10, T:0.50
Consensus pattern (48 bp):
TCTTTGATTAACTTATTCGTCTCGAGCTATGCTCTCAATCAATTTCCT
Found at i:51252047 original size:181 final size:181
Alignment explanation
Indices: 51251765--51252348 Score: 857
Period size: 181 Copynumber: 3.2 Consensus size: 181
51251755 TGAAGCCACT
* * * * *
51251765 AAACCTTATCTCCTTGAAATAGCAATAGAGTAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTTG
1 AAACCTTATCTCCCTGAAATAACAGTGGAGCAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTTG
* * * *
51251830 TAGTGGAGCAAACTAGAA-ATCA-CGAATCACATTTCCCTAAAGTTGCAGTGGAATAGATTGAAG
66 TAGTGGAGCAGA-TTGAAGAT-AGCGAATCTCATTTCCCTAAAGTTGCAGTGGAACAGATTGAAG
*
51251893 CTATAAATAAACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCATAGC
129 CTATAAATAAACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGC
* * *
51251946 AAACCTTATCTCCCTGAAATAACAGTGGAGTAGGTTGAAGTTAAAGTCTAATCTCCCTGAAGTTA
1 AAACCTTATCTCCCTGAAATAACAGTGGAGCAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTTG
* * * * * *
51252011 CAATGGAGCAGATTGAAGATAGCAAATCTGATTTCCCTAAAGTTGCAGTGAAACAGATTAAAGCT
66 TAGTGGAGCAGATTGAAGATAGCGAATCTCATTTCCCTAAAGTTGCAGTGGAACAGATTGAAGCT
* * *
51252076 ATAAATAAATAGATCTTATCTCTCTGAAGTTGCAATAGAGCAGATCATAGA
131 ATAAATAAACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGC
* *
51252127 AAACCTTATCTCCCTGAAATAACAGTGGAGCAAGTTTAAGTTAAAGTCTTATCTCCCTGAAGTTG
1 AAACCTTATCTCCCTGAAATAACAGTGGAGCAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTTG
* * *
51252192 TAGTGGAGTAGACTGAAGATAGCGAATCTCATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCT
66 TAGTGGAGCAGATTGAAGATAGCGAATCTCATTTCCCTAAAGTTGCAGTGGAACAGATTGAAGCT
*
51252257 ATAAATAAACAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCATAGC
131 ATAAATAAACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGC
* **
51252308 AAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGT
1 AAACCTTATCTCCCTGAAATAACAGTGGAGCAGGTTGAAGT
51252349 CACAAATCCT
Statistics
Matches: 358, Mismatches: 43, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
180 5 0.01
181 353 0.99
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (181 bp):
AAACCTTATCTCCCTGAAATAACAGTGGAGCAGGTTGAAGTTAAAGTCTTATCTCCCTGAAGTTG
TAGTGGAGCAGATTGAAGATAGCGAATCTCATTTCCCTAAAGTTGCAGTGGAACAGATTGAAGCT
ATAAATAAACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGC
Found at i:51254015 original size:15 final size:15
Alignment explanation
Indices: 51253991--51254114 Score: 74
Period size: 15 Copynumber: 7.7 Consensus size: 15
51253981 TTGGTATTTT
51253991 ATTATCTATTATTATC
1 ATTAT-TATTATTATC
*
51254007 ATTATTATTATTTGTTC
1 ATTATTATTA-TT-ATC
*
51254024 ATCTATTTATTTATTACCC
1 AT-TA-TTA-TTATTA-TC
*
51254043 ATTTTGTACTTATATAT-
1 ATTAT-TA-TTAT-TATC
51254060 ATTATT-TTGATT-TC
1 ATTATTATT-ATTATC
*
51254074 TATTATTATTATTATT
1 -ATTATTATTATTATC
*
51254090 ATTATTATTATTATT
1 ATTATTATTATTATC
51254105 ATTATTATTA
1 ATTATTATTA
51254115 CAAATTGTAC
Statistics
Matches: 87, Mismatches: 8, Indels: 27
0.71 0.07 0.22
Matches are distributed among these distances:
13 1 0.01
14 3 0.03
15 41 0.47
16 11 0.13
17 9 0.10
18 9 0.10
19 10 0.11
20 3 0.03
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.61
Consensus pattern (15 bp):
ATTATTATTATTATC
Found at i:51254080 original size:3 final size:3
Alignment explanation
Indices: 51254074--51254114 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
51254064 TTTTGATTTC
51254074 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
51254115 CAAATTGTAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:51254287 original size:7 final size:7
Alignment explanation
Indices: 51254275--51254299 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
51254265 GTCTTTGCTA
51254275 TTTTATT
1 TTTTATT
51254282 TTTTATT
1 TTTTATT
51254289 TTTTATT
1 TTTTATT
51254296 TTTT
1 TTTT
51254300 TTTACATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTATT
Found at i:51254790 original size:28 final size:28
Alignment explanation
Indices: 51254759--51254814 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
51254749 TTCATAAAAG
*
51254759 AAGAATTTTTTAGGCAATGTTCTGCATT
1 AAGAATTTTTTAGGCAATGTTCGGCATT
51254787 AAGAATTTTTTAGGCAATGTTCGGCATT
1 AAGAATTTTTTAGGCAATGTTCGGCATT
51254815 TGTGTAACAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.41
Consensus pattern (28 bp):
AAGAATTTTTTAGGCAATGTTCGGCATT
Found at i:51255092 original size:22 final size:22
Alignment explanation
Indices: 51255046--51255108 Score: 76
Period size: 22 Copynumber: 2.9 Consensus size: 22
51255036 CACTTGTCAC
*
51255046 AGGGGC-ACACGCCCAT-CTGGG
1 AGGGGCAACACGCCCATGC-GGA
*
51255067 AGGGGCAACATGCCCATGCGGA
1 AGGGGCAACACGCCCATGCGGA
*
51255089 AGGGGCAACACGCCCGTGCG
1 AGGGGCAACACGCCCATGCG
51255109 AGCATTCCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
21 6 0.17
22 29 0.81
23 1 0.03
ACGTcount: A:0.22, C:0.32, G:0.38, T:0.08
Consensus pattern (22 bp):
AGGGGCAACACGCCCATGCGGA
Found at i:51256271 original size:46 final size:48
Alignment explanation
Indices: 51256201--51256469 Score: 224
Period size: 46 Copynumber: 5.8 Consensus size: 48
51256191 GGTAAGGTGT
*
51256201 CGATGCCATGTCCTAGACACGGTCTTACACTGCTCAT-ATCTC-AAGC
1 CGATGCCATGTCCTAGACATGGTCTTACACTGCTCATCATCTCGAAGC
* * *
51256247 CGATGCCATATCCTAGACATGGTCTTACACTGACT-ATCATTTCGTAGC
1 CGATGCCATGTCCTAGACATGGTCTTACACTG-CTCATCATCTCGAAGC
* * * *
51256295 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTA-CGTCTCGAGGC
1 CGATGCCATGTCCTAGACATGGTCTTACACT-GCTCATCATCTCGAAGC
* * *
51256341 CGATG-CATGTCCCAGACAT-GTCTTACACTAGC-CCTCGTCTC-AATGC
1 CGATGCCATGTCCTAGACATGGTCTTACACT-GCTCATCATCTCGAA-GC
* * **
51256387 CGATGCGATGTCCTAGACATGGTCTTACACTGGCTC-TCATAAT-GTGGC
1 CGATGCCATGTCCTAGACATGGTCTTACACT-GCTCATCAT-CTCGAAGC
* *
51256435 CGATG-CATGTCCCAAACAT-GTCTTACACTAGCTCA
1 CGATGCCATGTCCTAGACATGGTCTTACACT-GCTCA
51256470 CACATGAATG
Statistics
Matches: 185, Mismatches: 25, Indels: 25
0.79 0.11 0.11
Matches are distributed among these distances:
45 1 0.01
46 109 0.59
47 43 0.23
48 30 0.16
49 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCTAGACATGGTCTTACACTGCTCATCATCTCGAAGC
Found at i:51256419 original size:94 final size:93
Alignment explanation
Indices: 51256201--51256466 Score: 267
Period size: 94 Copynumber: 2.8 Consensus size: 93
51256191 GGTAAGGTGT
* * * * * *
51256201 CGATGCCATGTCCTAGACACGGTCTTACACT-GCTCATATCTC-AAGCCGATGCCATATCCTAGA
1 CGATG-CATGTCCTAGACATGGTCTTACACTGGCTTACATCTCGAGGCCGATG-CATGTCCCAGA
* * *
51256264 CATGGTCTTACACT-GACTATCATTTCGTAGC
64 CAT-GTCTTACACTAG-CCATCATCTCATAGC
* *
51256295 CGATGCATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCCAGACA
1 CGATGCATGTCCTAGACATGGTCTTACACTGGCTTACATCTCGAGGCCGATGCATGTCCCAGACA
* *
51256359 TGTCTTACACTAGCCCTCGTCTCA-ATGC
66 TGTCTTACACTAGCCATCATCTCATA-GC
* * *
51256387 CGATGCGATGTCCTAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCGATGCATGTCCCAA
1 CGATGC-ATGTCCTAGACATGGTCTTACACTGGCT-TACAT-CTCGAGGCCGATGCATGTCCCAG
51256450 ACATGTCTTACACTAGC
63 ACATGTCTTACACTAGC
51256467 TCACACATGA
Statistics
Matches: 146, Mismatches: 18, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
91 1 0.01
92 34 0.23
93 45 0.31
94 64 0.44
95 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (93 bp):
CGATGCATGTCCTAGACATGGTCTTACACTGGCTTACATCTCGAGGCCGATGCATGTCCCAGACA
TGTCTTACACTAGCCATCATCTCATAGC
Found at i:51259815 original size:40 final size:40
Alignment explanation
Indices: 51259712--51260082 Score: 575
Period size: 40 Copynumber: 9.3 Consensus size: 40
51259702 GATGATAACT
* *
51259712 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
51259752 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* * *
51259791 GGGCTGAGTCCTGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
51259831 GGTCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* * *
51259871 GGGCTGAGTCCTGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
51259911 GGTCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* * *
51259951 GGGCTGAGTCCTGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
51259991 GGTCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
51260031 GGGCTGAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
51260071 GGGCTAAGTCCC
1 GGGCTAAGTCCC
51260083 AACGATGAGG
Statistics
Matches: 300, Mismatches: 29, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
39 34 0.11
40 266 0.89
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:51259868 original size:80 final size:80
Alignment explanation
Indices: 51259712--51260082 Score: 647
Period size: 80 Copynumber: 4.7 Consensus size: 80
51259702 GATGATAACT
* * * * * *
51259712 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAG-CCCGAAGGCATTTGT
1 GGGCTGAGTCCTGAAGGCATTTGTGCGAGTTACTATA-ACCGGTCTAAGTCCCGAAGGCATTTGT
51259775 GCGAGTTACTATATCC
65 GCGAGTTACTATATCC
51259791 GGGCTGAGTCCTGAAGGCATTTGTGCGAGTTACTATAACCGGTCTAAGTCCCGAAGGCATTTGTG
1 GGGCTGAGTCCTGAAGGCATTTGTGCGAGTTACTATAACCGGTCTAAGTCCCGAAGGCATTTGTG
51259856 CGAGTTACTATATCC
66 CGAGTTACTATATCC
51259871 GGGCTGAGTCCTGAAGGCATTTGTGCGAGTTACTATAACCGGTCTAAGTCCCGAAGGCATTTGTG
1 GGGCTGAGTCCTGAAGGCATTTGTGCGAGTTACTATAACCGGTCTAAGTCCCGAAGGCATTTGTG
51259936 CGAGTTACTATATCC
66 CGAGTTACTATATCC
51259951 GGGCTGAGTCCTGAAGGCATTTGTGCGAGTTACTATAACCGGTCTAAGTCCCGAAGGCATTTGTG
1 GGGCTGAGTCCTGAAGGCATTTGTGCGAGTTACTATAACCGGTCTAAGTCCCGAAGGCATTTGTG
51260016 CGAGTTACTATATCC
66 CGAGTTACTATATCC
* *
51260031 GGGCTGAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCC
1 GGGCTGAGTCCTGAAGGCATTTGTGCGAGTTACTATAACCGGTCTAAGTCCC
51260083 AACGATGAGG
Statistics
Matches: 282, Mismatches: 8, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
79 40 0.14
80 242 0.86
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.27
Consensus pattern (80 bp):
GGGCTGAGTCCTGAAGGCATTTGTGCGAGTTACTATAACCGGTCTAAGTCCCGAAGGCATTTGTG
CGAGTTACTATATCC
Found at i:51267313 original size:46 final size:46
Alignment explanation
Indices: 51267214--51267336 Score: 151
Period size: 46 Copynumber: 2.6 Consensus size: 46
51267204 TATCTCAAGT
* * *
51267214 CGATGCCATGTCCCAGACATGGCCTTACACTGATTATCATCTCGTAGT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGATTATCATATCGTAGG
* *
51267262 CGATGCATGTCCAAGACATGTCTTACACTGGCTTA-CATATCG-AGG
1 CGATGCATGTCCCAGACATGTCTTACACT-GATTATCATATCGTAGG
51267307 CTGATGCATGTCCCAGACATGTCTTACACT
1 C-GATGCATGTCCCAGACATGTCTTACACT
51267337 AGCCCTCGTC
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
45 3 0.04
46 42 0.63
47 17 0.25
48 5 0.07
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTGATTATCATATCGTAGG
Found at i:51267359 original size:46 final size:45
Alignment explanation
Indices: 51267208--51267385 Score: 135
Period size: 46 Copynumber: 3.8 Consensus size: 45
51267198 AACTCATATC
* * ** *
51267208 TCAAGTCGATGCCATGTCCCAGACATGGCCTTACACTG-ATTATCATC
1 TCAAGTCGATG-CATGTCCAAGACAT-GTCTTACACTGCCCTA-CATA
* * *
51267255 TCGTAGTCGATGCATGTCCAAGACATGTCTTACACTGGCTTACATA
1 TC-AAGTCGATGCATGTCCAAGACATGTCTTACACTGCCCTACATA
* * * * *
51267301 TCGAGGCTGATGCATGTCCCAGACATGTCTTACACTAGCCCT-CGTC
1 TCAAGTC-GATGCATGTCCAAGACATGTCTTACACT-GCCCTACATA
*
51267347 TCAATGTCGATGCGATGTCCTAGACATGGTCTTACACTG
1 TCAA-GTCGATGC-ATGTCCAAGACAT-GTCTTACACTG
51267386 GCTCTCATAA
Statistics
Matches: 109, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
45 3 0.03
46 52 0.48
47 36 0.33
48 18 0.17
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.29
Consensus pattern (45 bp):
TCAAGTCGATGCATGTCCAAGACATGTCTTACACTGCCCTACATA
Found at i:51267418 original size:94 final size:92
Alignment explanation
Indices: 51267260--51267433 Score: 253
Period size: 94 Copynumber: 1.9 Consensus size: 92
51267250 TCATCTCGTA
* *
51267260 GTCGATGCATGTCCAAGACATGTCTTACACTGGCTTACATATCGAGGCTGATGCATGTCCCAGAC
1 GTCGATGCATGTCCAAGACATGTCTTACACTGGCTTACATATCGAGGCTAATGCACGTCCCAGAC
*
51267325 ATGTCTTACACTAGCCCTCGTCTCAAT
66 ATATCTTACACTAGCCCTCGTCTCAAT
* *
51267352 GTCGATGCGATGTCCTAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCTAATGCACGTCCC
1 GTCGATGC-ATGTCCAAGACAT-GTCTTACACTGGCT-TACAT-ATCGAGGCTAATGCACGTCCC
51267415 AGACATATCTTACACTAGC
62 AGACATATCTTACACTAGC
51267434 TCACACACGA
Statistics
Matches: 73, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
92 8 0.11
93 12 0.16
94 50 0.68
95 3 0.04
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (92 bp):
GTCGATGCATGTCCAAGACATGTCTTACACTGGCTTACATATCGAGGCTAATGCACGTCCCAGAC
ATATCTTACACTAGCCCTCGTCTCAAT
Found at i:51270185 original size:24 final size:25
Alignment explanation
Indices: 51270157--51270203 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
51270147 TAATGTTCAT
*
51270157 TTAACCGAATTGACC-AAATTAAAA
1 TTAACCGAATTAACCAAAATTAAAA
*
51270181 TTAACTGAATTAACCAAAATTAA
1 TTAACCGAATTAACCAAAATTAA
51270204 CCAAATTGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.51, C:0.15, G:0.06, T:0.28
Consensus pattern (25 bp):
TTAACCGAATTAACCAAAATTAAAA
Found at i:51271174 original size:5 final size:5
Alignment explanation
Indices: 51271164--51271191 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
51271154 CTGTGTGTTC
51271164 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
51271192 CAAAAATTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:51275527 original size:5 final size:5
Alignment explanation
Indices: 51275517--51275559 Score: 86
Period size: 5 Copynumber: 8.6 Consensus size: 5
51275507 ATGTGTGTTC
51275517 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
51275560 CACAATATTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 38 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:51277748 original size:23 final size:22
Alignment explanation
Indices: 51277697--51277744 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
51277687 TAAAGTATTA
*
51277697 TAAATTTATATGTATTTTTTTG
1 TAAATTTATATGTATTTTTGTG
*
51277719 TAAATTTATAATTTA-TTTTGTG
1 TAAATTTAT-ATGTATTTTTGTG
51277741 TAAA
1 TAAA
51277745 ATTTGACTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 19 0.83
23 4 0.17
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.58
Consensus pattern (22 bp):
TAAATTTATATGTATTTTTGTG
Found at i:51278256 original size:11 final size:9
Alignment explanation
Indices: 51278227--51278252 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
51278217 AACAAAAATT
51278227 TAATTTTTA
1 TAATTTTTA
51278236 TAATTTTTA
1 TAATTTTTA
51278245 TAATTTTT
1 TAATTTTT
51278253 TTATTTTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (9 bp):
TAATTTTTA
Found at i:51278479 original size:24 final size:24
Alignment explanation
Indices: 51278452--51278497 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
51278442 AAGCGTTGAC
51278452 TCAATTGTTAAAGTCAAAAGCTAG
1 TCAATTGTTAAAGTCAAAAGCTAG
51278476 TCAATTGTTAAAGTCAAAAGCT
1 TCAATTGTTAAAGTCAAAAGCT
51278498 TTAGCTCTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.30
Consensus pattern (24 bp):
TCAATTGTTAAAGTCAAAAGCTAG
Found at i:51281537 original size:31 final size:31
Alignment explanation
Indices: 51281502--51281569 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
51281492 CTTAATACTC
* *
51281502 TAGTGACTTAAAT-AAAATATTTTGAATAGTT
1 TAGTGACTTAAATGAAAA-ATTTCGAATAATT
*
51281533 TAGTGACTTAAATGAAAACTTTCGAATAATT
1 TAGTGACTTAAATGAAAAATTTCGAATAATT
51281564 TAGTGA
1 TAGTGA
51281570 TCAAATTATA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
31 29 0.88
32 4 0.12
ACGTcount: A:0.41, C:0.06, G:0.15, T:0.38
Consensus pattern (31 bp):
TAGTGACTTAAATGAAAAATTTCGAATAATT
Found at i:51283497 original size:17 final size:17
Alignment explanation
Indices: 51283475--51283520 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
51283465 GCACGATTCA
51283475 ATTTTTTATATTAAAAT
1 ATTTTTTATATTAAAAT
*
51283492 ATTTTTTA-AATAAAAT
1 ATTTTTTATATTAAAAT
*
51283508 ATTATTTTTTATT
1 ATT-TTTTATATT
51283521 TTCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
16 10 0.42
17 12 0.50
18 2 0.08
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
ATTTTTTATATTAAAAT
Found at i:51283698 original size:23 final size:24
Alignment explanation
Indices: 51283671--51283715 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
51283661 AAAATCAAAT
*
51283671 GAGC-ACATACACAAAATTTAGCA
1 GAGCAACAGACACAAAATTTAGCA
51283694 GAGCAACAGACACAAAATTTAG
1 GAGCAACAGACACAAAATTTAG
51283716 TTGAACGGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.49, C:0.20, G:0.16, T:0.16
Consensus pattern (24 bp):
GAGCAACAGACACAAAATTTAGCA
Found at i:51284249 original size:140 final size:134
Alignment explanation
Indices: 51283997--51284711 Score: 774
Period size: 140 Copynumber: 5.3 Consensus size: 134
51283987 CAAAACAGTG
* * * **
51283997 CTAAGACGACAGTTATGGGGCAACACCTTT-CTAAGTGTTGCGATAGACTGGTCAACATACATTT
1 CTAAGACGACACTTTTGGGGCAACA-CTTTCCTAAGTGTTGCG---GACTAG--AAC-TACGCTT
* * * *
51284061 TCGGCAACTTTTTGTATAAGGGTTGCGATATGCATGCCTAAAGCAACGCTTAAATAAGAGTTGGC
59 TCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGC
*
51284126 TTTGTCTAGTC
124 TTTGTGTAGTC
* * *
51284137 CTAAGACGACA-TTTATGAGGCAACACTTTTCTAAGTGTTGCGATAGACTAGCCAACATACACTT
1 CTAAGACGACACTTT-TGGGGCAACACTTTCCTAAGTGTTGCG---GACTAG--AAC-TACGCTT
* * * * *
51284201 TCGGCAACTCTTTGTATAAGGGTTGGGATAAGCATGCCTAAAGCAACGCTTAAATAAGAGTTGG-
59 TCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGC
51284265 TGTTGTGTAGTC
124 T-TTGTGTAGTC
* *
51284277 CTAAGACGACACTTTTGGGGCAACACTTTCCTAAGTGTT--GGACTA-TACTACGCTTTCGCCAA
1 CTAAGACGACACTTTTGGGGCAACACTTTCCTAAGTGTTGCGGACTAGAACTACGCTTTCGGCAA
* * * *
51284339 CTATTTGTATAAGGGTTGCGATATGTATGCCTACGGCAACGCTTGCATAAGAGTTGGAGTTTGTG
66 CTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGG-CTTTGTG
51284404 TAGTC
130 TAGTC
* * ** *
51284409 CTAGGACGACACTTTTGTGGTGACACTTTCCTAAGTGTTGC--A-TAG-ACTACGCTTTCGTCAA
1 CTAAGACGACACTTTTGGGGCAACACTTTCCTAAGTGTTGCGGACTAGAACTACGCTTTCGGCAA
* * *
51284470 CTCTTTATATAAGGGTTAG-GATATGTATGCCTAAGGCAATGCTTGAATAAGAGTTGGTTTTTTG
66 CTCTTTGTATAAGGGTT-GCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGG--CTTTG
51284534 TGTAGTC
128 TGTAGTC
* * * *
51284541 CTAAGACGACACTTTTGTGGCGACACTTTCCTAAGTGCTGC-GA-TA-AACTGCGCTTTCGGCAA
1 CTAAGACGACACTTTTGGGGCAACACTTTCCTAAGTGTTGCGGACTAGAACTACGCTTTCGGCAA
** *
51284603 CTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAGCAAGAGTTGGCTTTTGTC
66 CTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGC-TTTGTG
51284668 TAGTC
130 TAGTC
* * *
51284673 CTAAGACTACAGTTTTGGGGCGACACTTTCCTAAGTGTT
1 CTAAGACGACACTTTTGGGGCAACACTTTCCTAAGTGTT
51284712 CAGATAGACC
Statistics
Matches: 511, Mismatches: 49, Indels: 38
0.85 0.08 0.06
Matches are distributed among these distances:
131 128 0.25
132 144 0.28
133 69 0.14
135 5 0.01
138 1 0.00
139 7 0.01
140 154 0.30
141 3 0.01
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.32
Consensus pattern (134 bp):
CTAAGACGACACTTTTGGGGCAACACTTTCCTAAGTGTTGCGGACTAGAACTACGCTTTCGGCAA
CTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTGTGT
AGTC
Found at i:51284458 original size:131 final size:131
Alignment explanation
Indices: 51284198--51284711 Score: 701
Period size: 132 Copynumber: 3.9 Consensus size: 131
51284188 CCAACATACA
* * * * *
51284198 CTTTCGGCAACTCTTTGTATAAGGGTTGGGATAAGCATGCCTAAAGCAACGCTTAAATAAGAGTT
1 CTTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTT
* * *
51284263 GGTG-TTGTGTAGTCCTAAGACGACACTTTTGGGGCAACACTTTCCTAAGTGTTGGACTATACTA
66 GGTGTTTGTGTAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGCA-TAAACTA
51284327 CG
130 CG
* * * *
51284329 CTTTCGCCAACTATTTGTATAAGGGTTGCGATATGTATGCCTACGGCAACGCTTGCATAAGAGTT
1 CTTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTT
* * * * *
51284394 GGAGTTTGTGTAGTCCTAGGACGACACTTTTGTGGTGACACTTTCCTAAGTGTTGCATAGACTAC
66 GGTGTTTGTGTAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGCATAAACTAC
51284459 G
131 G
* * *
51284460 CTTTCGTCAACTCTTTATATAAGGGTTAG-GATATGTATGCCTAAGGCAATGCTTGAATAAGAGT
1 CTTTCGGCAACTCTTTGTATAAGGGTT-GCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGT
* * *
51284524 TGGTTTTTTGTGTAGTCCTAAGACGACACTTTTGTGGCGACACTTTCCTAAGTGCTGCGATAAAC
65 TGG-TGTTTGTGTAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGC-ATAAAC
*
51284589 TGCG
128 TACG
**
51284593 CTTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAGCAAGAGTT
1 CTTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTT
* * *
51284658 GGCT-TTTGTCTAGTCCTAAGACTACAGTTTTGGGGCGACACTTTCCTAAGTGTT
66 GG-TGTTTGTGTAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTT
51284712 CAGATAGACC
Statistics
Matches: 338, Mismatches: 40, Indels: 9
0.87 0.10 0.02
Matches are distributed among these distances:
131 126 0.37
132 143 0.42
133 69 0.20
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (131 bp):
CTTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTT
GGTGTTTGTGTAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGCATAAACTAC
G
Found at i:51284612 original size:264 final size:263
Alignment explanation
Indices: 51284059--51284711 Score: 830
Period size: 264 Copynumber: 2.4 Consensus size: 263
51284049 CAACATACAT
* * * *
51284059 TTTCGGCAACTTTTTGTATAAGGGTTGCGATATGCATGCCTAAAGCAACGCTTAAATAAGAGTTG
1 TTTCGGCAACTATTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTT-GATAAGAGTTG
* *
51284124 GCTTTGTCTAGTCCTAAGACGACATTTATGAGGCAACACTTTTCTAAGTGTTGCGATAGACTAGC
65 GCTTTGTCTAGTCCTAAGACGACATTT-TGAGGCGACACTTTCCTAAGTGTTGC---A-ACTAG-
* *
51284189 CAACATACACTTTCGGCAACTCTTTGTATAAGGGTTGGGATAAGCATGCCTAAAGCAACGCTTAA
124 C-ACATACACTTTCGGCAACTCTTTATATAAGGGTTAGGATAAGCATGCCTAAAGCAACGCTTAA
*
51284254 ATAAGAGTTGGTGTTGTGTAGTCCTAAGACGACACTTTTGGGGCAACACTTTCCTAAGTGTTGGA
188 ATAAGAGTTGGTGTTGTGTAGTCCTAAGACGACACTTTTGGGGCAACACTTTCCTAAGTGCTGGA
*
51284319 CTATACTACGC
253 CTAAACTACGC
* *
51284330 TTTCGCCAACTATTTGTATAAGGGTTGCGATATGTATGCCTACGGCAACGCTTGCATAAGAGTTG
1 TTTCGGCAACTATTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTG-ATAAGAGTTG
* * * * *
51284395 GAGTTTGTGTAGTCCTAGGACGACACTTTTGTGGTGACACTTTCCTAAGTGTTGC-A-TAG-AC-
65 G-CTTTGTCTAGTCCTAAGACGACA-TTTTGAGGCGACACTTTCCTAAGTGTTGCAACTAGCACA
* * * * * * *
51284456 TACGCTTTCGTCAACTCTTTATATAAGGGTTAGGATATGTATGCCTAAGGCAATGCTTGAATAAG
128 TACACTTTCGGCAACTCTTTATATAAGGGTTAGGATAAGCATGCCTAAAGCAACGCTTAAATAAG
* * *
51284521 AGTTGGTTTTTTGTGTAGTCCTAAGACGACACTTTTGTGGCGACACTTTCCTAAGTGCTGCGA-T
193 AGTTGG--TGTTGTGTAGTCCTAAGACGACACTTTTGGGGCAACACTTTCCTAAGTGCTG-GACT
*
51284585 AAACTGCGC
255 AAACTACGC
* *
51284594 TTTCGGCAACTCTTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGAGCAAGAGTTG
1 TTTCGGCAACTATTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGA-TAAGAGTTG
* *
51284659 GCTTTTGTCTAGTCCTAAGACTACAGTTTTGGGGCGACACTTTCCTAAGTGTT
65 GC-TTTGTCTAGTCCTAAGACGACA-TTTTGAGGCGACACTTTCCTAAGTGTT
51284712 CAGATAGACC
Statistics
Matches: 335, Mismatches: 39, Indels: 23
0.84 0.10 0.06
Matches are distributed among these distances:
262 62 0.19
263 3 0.01
264 160 0.48
265 2 0.01
266 3 0.01
267 1 0.00
271 59 0.18
272 42 0.13
273 3 0.01
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (263 bp):
TTTCGGCAACTATTTGTATAAGGGTTGCGATATGTATGCCTAAGGCAACGCTTGATAAGAGTTGG
CTTTGTCTAGTCCTAAGACGACATTTTGAGGCGACACTTTCCTAAGTGTTGCAACTAGCACATAC
ACTTTCGGCAACTCTTTATATAAGGGTTAGGATAAGCATGCCTAAAGCAACGCTTAAATAAGAGT
TGGTGTTGTGTAGTCCTAAGACGACACTTTTGGGGCAACACTTTCCTAAGTGCTGGACTAAACTA
CGC
Found at i:51285073 original size:7 final size:7
Alignment explanation
Indices: 51285026--51285101 Score: 71
Period size: 7 Copynumber: 10.4 Consensus size: 7
51285016 GGTGTAAGGT
51285026 TTTAGGG
1 TTTAGGG
* *
51285033 TTTTGTG
1 TTTAGGG
51285040 TTTATGGG
1 TTTA-GGG
*
51285048 TTTGGGG
1 TTTAGGG
**
51285055 TTTAAGAT
1 TTT-AGGG
51285063 TTTAGGG
1 TTTAGGG
*
51285070 TTTAGAG
1 TTTAGGG
51285077 TTTAGGG
1 TTTAGGG
51285084 TTTAGGG
1 TTTAGGG
51285091 TTTAAGGG
1 TTT-AGGG
51285099 TTT
1 TTT
51285102 TTTTAACATA
Statistics
Matches: 54, Mismatches: 12, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
7 38 0.70
8 16 0.30
ACGTcount: A:0.16, C:0.00, G:0.36, T:0.49
Consensus pattern (7 bp):
TTTAGGG
Found at i:51285100 original size:15 final size:14
Alignment explanation
Indices: 51285026--51285101 Score: 71
Period size: 15 Copynumber: 5.2 Consensus size: 14
51285016 GGTGTAAGGT
* *
51285026 TTTAGGGTTTTGTG
1 TTTAGGGTTTAGGG
*
51285040 TTTATGGGTTTGGGG
1 TTTA-GGGTTTAGGG
**
51285055 TTTAAGATTTTAGGG
1 TTT-AGGGTTTAGGG
*
51285070 TTTAGAGTTTAGGG
1 TTTAGGGTTTAGGG
51285084 TTTAGGGTTTAAGGG
1 TTTAGGGTTT-AGGG
51285099 TTT
1 TTT
51285102 TTTTAACATA
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
14 23 0.44
15 28 0.54
16 1 0.02
ACGTcount: A:0.16, C:0.00, G:0.36, T:0.49
Consensus pattern (14 bp):
TTTAGGGTTTAGGG
Found at i:51285797 original size:22 final size:21
Alignment explanation
Indices: 51285772--51285828 Score: 51
Period size: 22 Copynumber: 2.6 Consensus size: 21
51285762 TCAAAAAATT
51285772 TATAAAATAAAAATAGAAAAAA
1 TATAAAATAAAAAT-GAAAAAA
***
51285794 TATATGTTAAAAATGAAAAAA
1 TATAAAATAAAAATGAAAAAA
* *
51285815 AATTAAAACAAAAA
1 TA-TAAAATAAAAA
51285829 CTTTTCAGTA
Statistics
Matches: 26, Mismatches: 8, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
21 8 0.31
22 18 0.69
ACGTcount: A:0.72, C:0.02, G:0.05, T:0.21
Consensus pattern (21 bp):
TATAAAATAAAAATGAAAAAA
Found at i:51286421 original size:35 final size:34
Alignment explanation
Indices: 51286375--51286508 Score: 214
Period size: 35 Copynumber: 3.9 Consensus size: 34
51286365 GCAAACCTAT
51286375 TGCATCTGCCGTCCACTGCCTGCCCCAGCCATCGG
1 TGCATCTGCCGTCCACTGCCTGCCCCAGCCA-CGG
51286410 TGCATCTGCCGTCCACTGCCTGCCCCAGCCACGGG
1 TGCATCTGCCGTCCACTGCCTGCCCCAGCCAC-GG
*
51286445 TGCATCTGCCGTCCATTGCCTGCCCCAGCCACCGG
1 TGCATCTGCCGTCCACTGCCTGCCCCAGCCA-CGG
* *
51286480 TGCATCTGCCGTCCACCGCCTGCTCCAGC
1 TGCATCTGCCGTCCACTGCCTGCCCCAGC
51286509 TACTGGTAAA
Statistics
Matches: 93, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
34 1 0.01
35 91 0.98
36 1 0.01
ACGTcount: A:0.11, C:0.46, G:0.23, T:0.19
Consensus pattern (34 bp):
TGCATCTGCCGTCCACTGCCTGCCCCAGCCACGG
Found at i:51289206 original size:12 final size:11
Alignment explanation
Indices: 51289173--51289205 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
51289163 GCTTAGTAAA
*
51289173 CCTTTTCTTTT
1 CCTTTTTTTTT
51289184 CCTTTTTTTTT
1 CCTTTTTTTTT
51289195 CCTTTTTTTTT
1 CCTTTTTTTTT
51289206 TAAAAATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (11 bp):
CCTTTTTTTTT
Found at i:51296483 original size:74 final size:75
Alignment explanation
Indices: 51296400--51296551 Score: 186
Period size: 75 Copynumber: 2.0 Consensus size: 75
51296390 CAGTTGTCTC
* * * *
51296400 ATAATTTTTTTG-TGTCATG-GGAATCAAGTTGACAACATGTT-GCAA-TGTGTTGATTGCTTTT
1 ATAA-TTTTTTGATGTCATGTGAAAT-AAGTTGACAACATGTTCGCAACT-TGTTGACTACTTCT
51296461 ATAAGGATTTTGT
63 ATAAGGATTTTGT
* * *
51296474 ATAATTTTTTGATGTCATGTGAAATAGGTTGATAACATGTTCGCAACTTGTTGACTACTTCTATT
1 ATAATTTTTTGATGTCATGTGAAATAAGTTGACAACATGTTCGCAACTTGTTGACTACTTCTATA
51296539 AGGATTTTGT
66 AGGATTTTGT
51296549 ATA
1 ATA
51296552 TAAATTACTA
Statistics
Matches: 67, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
73 7 0.10
74 25 0.37
75 34 0.51
76 1 0.01
ACGTcount: A:0.27, C:0.09, G:0.20, T:0.44
Consensus pattern (75 bp):
ATAATTTTTTGATGTCATGTGAAATAAGTTGACAACATGTTCGCAACTTGTTGACTACTTCTATA
AGGATTTTGT
Found at i:51296808 original size:35 final size:35
Alignment explanation
Indices: 51296745--51296828 Score: 109
Period size: 35 Copynumber: 2.4 Consensus size: 35
51296735 GATAAAGATC
* *
51296745 TATCCCAACCTTTTTAAGTTTGCCTTAGACGGGTT
1 TATCCCAACCATTTTAAGGTTGCCTTAGACGGGTT
* *
51296780 TA-CCCTAACCATTTTAAGGTTGCTTTAGATGGGTT
1 TATCCC-AACCATTTTAAGGTTGCCTTAGACGGGTT
51296815 TATCCCAA-CATTTT
1 TATCCCAACCATTTT
51296829 TTAAGTTGCC
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
34 9 0.21
35 31 0.72
36 3 0.07
ACGTcount: A:0.23, C:0.21, G:0.15, T:0.40
Consensus pattern (35 bp):
TATCCCAACCATTTTAAGGTTGCCTTAGACGGGTT
Found at i:51296837 original size:35 final size:34
Alignment explanation
Indices: 51296745--51296840 Score: 106
Period size: 35 Copynumber: 2.7 Consensus size: 34
51296735 GATAAAGATC
*
51296745 TATCCCAACCTTTTTAAGTTTGCCTTAGACGGGTT
1 TATCCCAACATTTTTAAG-TTGCCTTAGACGGGTT
* *
51296780 TA-CCCTAACCA-TTTTAAGGTTGCTTTAGATGGGTT
1 TATCCC-AA-CATTTTTAA-GTTGCCTTAGACGGGTT
51296815 TATCCCAACATTTTTTAAGTTGCCTT
1 TATCCCAACA-TTTTTAAGTTGCCTT
51296841 GGAAAAGGTC
Statistics
Matches: 51, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
34 5 0.10
35 35 0.69
36 11 0.22
ACGTcount: A:0.22, C:0.21, G:0.16, T:0.42
Consensus pattern (34 bp):
TATCCCAACATTTTTAAGTTGCCTTAGACGGGTT
Found at i:51297063 original size:108 final size:106
Alignment explanation
Indices: 51296739--51297069 Score: 274
Period size: 108 Copynumber: 3.1 Consensus size: 106
51296729 ACATGAGATA
* * * * * * *
51296739 AAGATCTATCCCAACCTTTTTAAGTTTGCCTTAGACGGGTTTA-CCCTAACCATTTTAAGGTTGC
1 AAGATCTATCGCAACCTTTTTAGGGTT-CCTTAAACGGGTCTATCACTAACCTTTTTAAGGTTGC
** * * * *
51296803 TTTAGATGGGTTTATCCCAA-CATTTTTTAAGTTGCCTTGGAA
65 TTTAGACAGGTCTAT-CCAACCTTTTTTTAAGTTGCCTTAGAC
* * * * ** *
51296845 AAGGTCTATCGCAACCCTTTTAGGGTTGCTGTAAACGGGTCTATCGC-AAAATTTTTAACGTTG-
1 AAGATCTATCGCAACCTTTTTAGGGTTCCT-TAAACGGGTCTATCACTAACCTTTTTAAGGTTGC
* * * ** * *
51296908 TCCTAGACAGGTCAATCGCAACATTTTCTAAAAGTTTCCTTAAAC
65 T-TTAGACAGGTCTATC-CAACCTTTT-TTTAAGTTGCCTTAGAC
**
51296953 AAGATCTATCGCAACCTTTTTAGGGTTACCTTAAACGAATCTATCACTAACCTTTTTAAGGTTGC
1 AAGATCTATCGCAACCTTTTTAGGGTT-CCTTAAACGGGTCTATCACTAACCTTTTTAAGGTTGC
* *
51297018 TTTAGACAAGTCTATCCAACCTTTTTTTAAGGTTGCCATAGAC
65 TTTAGACAGGTCTATCCAACCTTTTTTTAA-GTTGCCTTAGAC
*
51297061 AAGGTCTAT
1 AAGATCTAT
51297070 TGTAACATTT
Statistics
Matches: 170, Mismatches: 45, Indels: 18
0.73 0.19 0.08
Matches are distributed among these distances:
105 4 0.02
106 56 0.33
107 8 0.05
108 74 0.44
109 27 0.16
110 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (106 bp):
AAGATCTATCGCAACCTTTTTAGGGTTCCTTAAACGGGTCTATCACTAACCTTTTTAAGGTTGCT
TTAGACAGGTCTATCCAACCTTTTTTTAAGTTGCCTTAGAC
Found at i:51297081 original size:37 final size:37
Alignment explanation
Indices: 51297005--51297242 Score: 148
Period size: 38 Copynumber: 6.4 Consensus size: 37
51296995 ATCACTAACC
** *
51297005 TTTTTAAGGTTGCTTTAGACAA-GTCTA-TCCAACCTT
1 TTTTTAAGGTTGCCGTAGACAAGGTCTATTGCAA-CTT
* *
51297041 TTTTTAAGGTTGCCATAGACAAGGTCTATTGTAACATT
1 TTTTTAAGGTTGCCGTAGACAAGGTCTATTGCAAC-TT
** * * *
51297079 TTTAAAATGTTGTCGTAGAC-AGGTCTATCGCAACTT
1 TTTTTAAGGTTGCCGTAGACAAGGTCTATTGCAACTT
* * * ***
51297115 TTTTTCAAGGTTGCCGTAAACAAGATATACCACAACTT
1 TTTTT-AAGGTTGCCGTAGACAAGGTCTATTGCAACTT
* * * **
51297153 TTTTAAAAGGTTGCCGTAGATAAAGTCTATAACAA-TT
1 TTTT-TAAGGTTGCCGTAGACAAGGTCTATTGCAACTT
* *
51297190 TTTATTAAGGGTTGCCGTAAACAAGG-CT-TCTCGCAAC-C
1 TTT-TTAA-GGTTGCCGTAGACAAGGTCTAT-T-GCAACTT
51297228 TTTTTAAGGTTGCCG
1 TTTTTAAGGTTGCCG
51297243 AAAACGAATC
Statistics
Matches: 156, Mismatches: 35, Indels: 22
0.73 0.16 0.10
Matches are distributed among these distances:
36 34 0.22
37 43 0.28
38 79 0.51
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (37 bp):
TTTTTAAGGTTGCCGTAGACAAGGTCTATTGCAACTT
Found at i:51297119 original size:38 final size:36
Alignment explanation
Indices: 51296791--51297129 Score: 118
Period size: 36 Copynumber: 9.4 Consensus size: 36
51296781 ACCCTAACCA
** ** * * *
51296791 TTTTAAGGTTGCTTTAGATGGGTTTATCCCAACATT
1 TTTTAAGGTTGCCATAGACAGGTCTATCGCAACTTT
* * * **
51296827 TTTTAA-GTTGCCTTGGAAAAGGTCTATCGCAAC-CC
1 TTTTAAGGTTGCCATAG-ACAGGTCTATCGCAACTTT
* ** * * **
51296862 TTTTAGGGTTGCTGTAAACGGGTCTATCGCAA-AAT
1 TTTTAAGGTTGCCATAGACAGGTCTATCGCAACTTT
* *
51296897 TTTTAACGTTGTCC-TAGACAGGTCAATCGCAACATTT
1 TTTTAAGGTTG-CCATAGACAGGTCTATCGCAAC-TTT
* * * * * * * *
51296934 TCTAAAAGTTTCCTTAAACAAGATCTATCGCAAC-CT
1 TTTTAAGGTTGCCATAGAC-AGGTCTATCGCAACTTT
* * * * * * *
51296970 TTTTAGGGTTACCTTAAAC-GAATCTATCACTAAC-CT
1 TTTTAAGGTTGCCATAGACAG-GTCTATCGC-AACTTT
** *
51297006 TTTTAAGGTTGCTTTAGACAAGTCTATC-CAACCTTT
1 TTTTAAGGTTGCCATAGACAGGTCTATCGCAA-CTTT
* *
51297042 TTTTAAGGTTGCCATAGACAAGGTCTATTGTAACATTT
1 TTTTAAGGTTGCCATAGAC-AGGTCTATCGCAAC-TTT
** * * *
51297080 TTAAAATGTTGTCGTAGACAGGTCTATCGCAACTTT
1 TTTTAAGGTTGCCATAGACAGGTCTATCGCAACTTT
51297116 TTTTCAAGGTTGCC
1 TTTT-AAGGTTGCC
51297130 GTAAACAAGA
Statistics
Matches: 224, Mismatches: 62, Indels: 33
0.70 0.19 0.10
Matches are distributed among these distances:
34 3 0.01
35 60 0.27
36 91 0.41
37 39 0.17
38 31 0.14
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (36 bp):
TTTTAAGGTTGCCATAGACAGGTCTATCGCAACTTT
Found at i:51297157 original size:75 final size:73
Alignment explanation
Indices: 51297010--51297214 Score: 196
Period size: 75 Copynumber: 2.7 Consensus size: 73
51297000 TAACCTTTTT
** * * * * ****
51297010 AAGGTTGCTTTAGACAAGTCTATCCAACCTTTTTTTAAGGTTGCCATAGACAAGGTCTATTGTAA
1 AAGGTTGCCGTAGACAAGTCTATCCAA-CTTTTTTTAAGGTTGCCGTAAACAAGATATACCACAA
51297075 CATTTTTAA
65 CATTTTTAA
* * *
51297084 AATGTTGTCGTAGACAGGTCTATCGCAACTTTTTTTCAAGGTTGCCGTAAACAAGATATACCACA
1 AAGGTTGCCGTAGACAAGTCTATC-CAACTTTTTTT-AAGGTTGCCGTAAACAAGATATACCACA
*
51297149 ACTTTTTTAA
64 ACATTTTTAA
* *
51297159 AAGGTTGCCGTAGATAAAGTCTATAACAA-TTTTTATTAAGGGTTGCCGTAAACAAG
1 AAGGTTGCCGTAGA-CAAGTCTAT-CCAACTTTTT-TTAA-GGTTGCCGTAAACAAG
51297215 GCTTCTCGCA
Statistics
Matches: 106, Mismatches: 19, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
74 27 0.25
75 51 0.48
76 28 0.26
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.35
Consensus pattern (73 bp):
AAGGTTGCCGTAGACAAGTCTATCCAACTTTTTTTAAGGTTGCCGTAAACAAGATATACCACAAC
ATTTTTAA
Found at i:51297360 original size:35 final size:36
Alignment explanation
Indices: 51297285--51297374 Score: 119
Period size: 35 Copynumber: 2.5 Consensus size: 36
51297275 CTCTAAACGA
* *
51297285 GTCTATCGCAACCATTTTTAACAGTTGTCTTAAATTG
1 GTCTATCGCAACC-TTTTTAACAGTTGTATTAAATGG
* **
51297322 GTCTATCGCAACCCTTTTATGA-TTGTATTAAATGG
1 GTCTATCGCAACCTTTTTAACAGTTGTATTAAATGG
51297357 GTCTATCGCAACCTTTTT
1 GTCTATCGCAACCTTTTT
51297375 CAAAGGTTGC
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
35 28 0.60
36 6 0.13
37 13 0.28
ACGTcount: A:0.24, C:0.20, G:0.14, T:0.41
Consensus pattern (36 bp):
GTCTATCGCAACCTTTTTAACAGTTGTATTAAATGG
Found at i:51298058 original size:14 final size:15
Alignment explanation
Indices: 51298025--51298062 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
51298015 AAGGATGAAC
*
51298025 ATAAAAATATACGAA
1 ATAAAAATATACAAA
*
51298040 TTAAAAATATA-AAA
1 ATAAAAATATACAAA
51298054 ATAAAAATA
1 ATAAAAATA
51298063 GAAATAGAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
14 10 0.50
15 10 0.50
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.24
Consensus pattern (15 bp):
ATAAAAATATACAAA
Found at i:51299109 original size:26 final size:28
Alignment explanation
Indices: 51299080--51299137 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 28
51299070 TATATATTTA
*
51299080 AATATTTTTA-AT-AAAAATAAAAAAAT
1 AATATTTTTATATAAAAAACAAAAAAAT
*
51299106 AATA-TTTTATTTAAAAAACAAAAAAAT
1 AATATTTTTATATAAAAAACAAAAAAAT
51299133 AATAT
1 AATAT
51299138 AAAAAATTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 5 0.19
26 5 0.19
27 17 0.63
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (28 bp):
AATATTTTTATATAAAAAACAAAAAAAT
Found at i:51301004 original size:18 final size:18
Alignment explanation
Indices: 51300968--51301022 Score: 83
Period size: 18 Copynumber: 2.9 Consensus size: 18
51300958 AATCATATCT
*
51300968 TCTAAGATTGCTTATCATA
1 TCTAAGATTGC-AATCATA
51300987 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
51301005 TCTAAGATTGCATATCAT
1 TCTAAGATTGCA-ATCAT
51301023 TGAAGATTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
18 18 0.53
19 16 0.47
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (18 bp):
TCTAAGATTGCAATCATA
Found at i:51302830 original size:8 final size:9
Alignment explanation
Indices: 51302802--51302827 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
51302792 AGGTCCTTTA
51302802 AAAATTTTT
1 AAAATTTTT
51302811 AAAATTTTT
1 AAAATTTTT
51302820 AAAATTTT
1 AAAATTTT
51302828 AAATTAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (9 bp):
AAAATTTTT
Found at i:51303209 original size:17 final size:18
Alignment explanation
Indices: 51303176--51303214 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
51303166 AAGTTATAAG
51303176 ATAATTTTATATA-TTTT
1 ATAATTTTATATATTTTT
* *
51303193 ATAATTTTATGTCTTTTT
1 ATAATTTTATATATTTTT
51303211 ATAA
1 ATAA
51303215 CAAATCATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (18 bp):
ATAATTTTATATATTTTT
Found at i:51303473 original size:31 final size:31
Alignment explanation
Indices: 51303438--51303511 Score: 87
Period size: 31 Copynumber: 2.4 Consensus size: 31
51303428 CAGTAAAGTA
* *
51303438 ACTAAAATTAACAATTTATCTAATGGAAATG
1 ACTAAAATTAACAACTTATCTAACGGAAATG
* * * *
51303469 ACTAAAATTGATAACTTCTCTAACGGGAATG
1 ACTAAAATTAACAACTTATCTAACGGAAATG
51303500 ACTAAAA-TAACA
1 ACTAAAATTAACA
51303512 TTTTTTTTAA
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
30 3 0.09
31 32 0.91
ACGTcount: A:0.47, C:0.14, G:0.11, T:0.28
Consensus pattern (31 bp):
ACTAAAATTAACAACTTATCTAACGGAAATG
Found at i:51303943 original size:14 final size:14
Alignment explanation
Indices: 51303924--51303953 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
51303914 GAACAACATG
51303924 GGGTAAGACAAGGA
1 GGGTAAGACAAGGA
51303938 GGGTAAGACAAGGA
1 GGGTAAGACAAGGA
51303952 GG
1 GG
51303954 AGGTTATGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.40, C:0.07, G:0.47, T:0.07
Consensus pattern (14 bp):
GGGTAAGACAAGGA
Found at i:51305564 original size:7 final size:6
Alignment explanation
Indices: 51305523--51305563 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
51305513 ATAATTTAAT
*
51305523 AAATAA AAATAA AAATCTAA AACTAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAA
51305564 ACATATAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 26 0.84
8 5 0.16
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:51305564 original size:20 final size:20
Alignment explanation
Indices: 51305526--51305565 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
51305516 ATTTAATAAA
**
51305526 TAAAAATAAAAATCTAAAAC
1 TAAAAATAAAAATAAAAAAC
51305546 TAAAAATAAAAATAAAAAAC
1 TAAAAATAAAAATAAAAAAC
51305566 ATATAATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.75, C:0.07, G:0.00, T:0.17
Consensus pattern (20 bp):
TAAAAATAAAAATAAAAAAC
Found at i:51305601 original size:9 final size:9
Alignment explanation
Indices: 51305583--51305686 Score: 91
Period size: 9 Copynumber: 11.6 Consensus size: 9
51305573 TTTATACAAA
*
51305583 TAATTTGGT
1 TAATTCGGT
51305592 TAATTCGGT
1 TAATTCGGT
* *
51305601 TAATTTGGG
1 TAATTCGGT
* *
51305610 TAATTTGGG
1 TAATTCGGT
51305619 TAATTCGGT
1 TAATTCGGT
**
51305628 TAATTCGAC
1 TAATTCGGT
* **
51305637 TAGTTCGAC
1 TAATTCGGT
51305646 TAATTCGGT
1 TAATTCGGT
*
51305655 TAATTCGAT
1 TAATTCGGT
*
51305664 TAATTCAGT
1 TAATTCGGT
*
51305673 TAATTCGAT
1 TAATTCGGT
51305682 TAATT
1 TAATT
51305687 TTATACTTAT
Statistics
Matches: 79, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 79 1.00
ACGTcount: A:0.27, C:0.10, G:0.19, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:51306753 original size:179 final size:179
Alignment explanation
Indices: 51306453--51306786 Score: 623
Period size: 179 Copynumber: 1.9 Consensus size: 179
51306443 GAACTAGAAA
51306453 TCAATAGAAATCAACAAAATTGTTATTTCAGAAAATAGATTTAATATTCAGAGAATAAAACTCTC
1 TCAATAGAAATCAACAAAATTGTTATTTCAGAAAATAGATTTAATATTCAGAGAATAAAACTCTC
*
51306518 ACTATTTTTTAGTAGAATAACAATATCTTAATGTTGTGTATTTTACCCTACTAGTGACATCTATT
66 ACTATTTTTTAGTAGAATAACAATATCTTAAAGTTGTGTATTTTACCCTACTAGTGACATCTATT
51306583 TATAGGGAGAAGAAGTAAAGTCTTTTAGAGTGAAAACAAAAATCTCTTC
131 TATAGGGAGAAGAAGTAAAGTCTTTTAGAGTGAAAACAAAAATCTCTTC
* *
51306632 TCAATAGAAATCGACAAAATTGTTTTTTCAGAAAATAGATTTAATATTCAGAGAATAAAACTCTC
1 TCAATAGAAATCAACAAAATTGTTATTTCAGAAAATAGATTTAATATTCAGAGAATAAAACTCTC
* *
51306697 ACTATTTTTTAGTAGAATAACAATATCTTAAAGTTTTGTATTTTACCCTCCTAGTGACATCTATT
66 ACTATTTTTTAGTAGAATAACAATATCTTAAAGTTGTGTATTTTACCCTACTAGTGACATCTATT
51306762 TATAGGGAGAAGAAGTAAAGTCTTT
131 TATAGGGAGAAGAAGTAAAGTCTTT
51306787 GTTGAATTGT
Statistics
Matches: 150, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
179 150 1.00
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (179 bp):
TCAATAGAAATCAACAAAATTGTTATTTCAGAAAATAGATTTAATATTCAGAGAATAAAACTCTC
ACTATTTTTTAGTAGAATAACAATATCTTAAAGTTGTGTATTTTACCCTACTAGTGACATCTATT
TATAGGGAGAAGAAGTAAAGTCTTTTAGAGTGAAAACAAAAATCTCTTC
Found at i:51308449 original size:51 final size:51
Alignment explanation
Indices: 51308394--51308613 Score: 210
Period size: 51 Copynumber: 4.3 Consensus size: 51
51308384 GACTTTCACA
* * **
51308394 TAGTACCACACTTGTGATCAAAACCATCTCTTACACATAGTAGCCTGCACT
1 TAGTACTACACATGTGATCAAAACCATCTGGTACACATAGTAGCCTGCACT
* * * *
51308445 TAGTACCACACATGTGATCAAAGCTATCGGGTACGA-ATAGTAGCCTGCACT
1 TAGTACTACACATGTGATCAAAACCATCTGGTAC-ACATAGTAGCCTGCACT
* ** *
51308496 TAGTACTACACATGCGA-CCTAACCATCTGGTACACGTAGTAGCCTGCACT
1 TAGTACTACACATGTGATCAAAACCATCTGGTACACATAGTAGCCTGCACT
* * * * * *** * *
51308546 TCGTATTACACACGTGACCTAAAACCATTTTAAACACATAGTAGCCTGAACA
1 TAGTACTACACATGTGATC-AAAACCATCTGGTACACATAGTAGCCTGCACT
51308598 TAGTACTACACATGTG
1 TAGTACTACACATGTG
51308614 TTCTCACAAT
Statistics
Matches: 135, Mismatches: 30, Indels: 7
0.78 0.17 0.04
Matches are distributed among these distances:
49 1 0.01
50 38 0.28
51 59 0.44
52 37 0.27
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.25
Consensus pattern (51 bp):
TAGTACTACACATGTGATCAAAACCATCTGGTACACATAGTAGCCTGCACT
Found at i:51308556 original size:50 final size:50
Alignment explanation
Indices: 51308415--51308613 Score: 193
Period size: 50 Copynumber: 3.9 Consensus size: 50
51308405 TTGTGATCAA
** * * *
51308415 AACCATCTCTTACACATAGTAGCCTGCACTTAGTACCACACATGTGATCA
1 AACCATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT
* * *
51308465 AAGCTATCGGGTACGA-ATAGTAGCCTGCACTTAGTACTACACATGCGACCT
1 AA-CCATCTGGTAC-ACATAGTAGCCTGCACTTAGTACTACACATGTGACCT
* * * *
51308516 AACCATCTGGTACACGTAGTAGCCTGCACTTCGTATTACACACGTGACCT
1 AACCATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT
* *** * *
51308566 AAAACCATTTTAAACACATAGTAGCCTGAACATAGTACTACACATGTG
1 --AACCATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTG
51308614 TTCTCACAAT
Statistics
Matches: 119, Mismatches: 25, Indels: 8
0.78 0.16 0.05
Matches are distributed among these distances:
49 1 0.01
50 41 0.34
51 40 0.34
52 37 0.31
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (50 bp):
AACCATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT
Found at i:51314177 original size:24 final size:24
Alignment explanation
Indices: 51314150--51314202 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
51314140 TACATTTGAT
*
51314150 TATGAGAATACATCTGATTCCGTA
1 TATGAGAATACATCTGAATCCGTA
** *
51314174 TATGAGAATATGTCTGAATCTGTA
1 TATGAGAATACATCTGAATCCGTA
51314198 TATGA
1 TATGA
51314203 AAACGTATCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.36
Consensus pattern (24 bp):
TATGAGAATACATCTGAATCCGTA
Found at i:51319168 original size:23 final size:23
Alignment explanation
Indices: 51319142--51319199 Score: 64
Period size: 23 Copynumber: 2.5 Consensus size: 23
51319132 TAGAATGTCA
* *
51319142 GTATGGCGTTTTCTGTAAAACTT
1 GTATGGCGTATTCGGTAAAACTT
* *
51319165 GTATGGAGTATTCGGTAAAGCTT
1 GTATGGCGTATTCGGTAAAACTT
51319188 -TCATGGCGTATT
1 GT-ATGGCGTATT
51319200 TGGAGATATT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
22 1 0.03
23 28 0.97
ACGTcount: A:0.22, C:0.12, G:0.26, T:0.40
Consensus pattern (23 bp):
GTATGGCGTATTCGGTAAAACTT
Found at i:51322424 original size:34 final size:34
Alignment explanation
Indices: 51322381--51322448 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
51322371 GGGTAGATGA
51322381 CTTAATTGATAAATAAATAATAAACCTAAAGGCT
1 CTTAATTGATAAATAAATAATAAACCTAAAGGCT
51322415 CTTAATTGATAAATAAATAATAAACCTAAAGGCT
1 CTTAATTGATAAATAAATAATAAACCTAAAGGCT
51322449 AGCTATCATG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.50, C:0.12, G:0.09, T:0.29
Consensus pattern (34 bp):
CTTAATTGATAAATAAATAATAAACCTAAAGGCT
Found at i:51323298 original size:49 final size:48
Alignment explanation
Indices: 51323237--51323392 Score: 156
Period size: 49 Copynumber: 3.2 Consensus size: 48
51323227 GAGGTGTGTT
* *
51323237 AGTGTAACACCTGTCTAAGACATGGCATCGACATAGATAAGTGAGAGCC
1 AGTGTAAGACCTGTCTAGGACATGGCATCGACATAGAT-AGTGAGAGCC
* * * **
51323286 AGTGTAAGACCTGTCTAGGACATGGCATCGTCCTCGAT-GT-ATGTAAGTT
1 AGTGTAAGACCTGTCTAGGACATGGCATCGACATAGATAGTGA-G--AGCC
* * *
51323335 AGTGTAAGACCTGTCTGGGACATGGCATCAACTTAGAT-GTGAGAGCC
1 AGTGTAAGACCTGTCTAGGACATGGCATCGACATAGATAGTGAGAGCC
*
51323382 AATGTAAGACC
1 AGTGTAAGACC
51323393 ATGTTTGGAA
Statistics
Matches: 88, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
46 1 0.01
47 15 0.17
49 71 0.81
50 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTAGGACATGGCATCGACATAGATAGTGAGAGCC
Found at i:51323312 original size:93 final size:95
Alignment explanation
Indices: 51323193--51323392 Score: 246
Period size: 98 Copynumber: 2.1 Consensus size: 95
51323183 TATGCAAGCT
* * * * *
51323193 AGTGTAAAACCTGTCTTGGACATGGCATCG-GCTTGA-G-GTGT-GTTAGTGTAACACCTGTCTA
1 AGTGTAAGACCTGTCTAGGACATGGCATCGTCCTCGATGTATGTAGTTAGTGTAACACCTGTCTA
*
51323254 AGACATGGCATCGACATAGATAAGTGAGAGCC
66 AGACATGGCATCAACATAGAT--GTGAGAGCC
*
51323286 AGTGTAAGACCTGTCTAGGACATGGCATCGTCCTCGATGTATGTAAGTTAGTGTAAGACCTGTCT
1 AGTGTAAGACCTGTCTAGGACATGGCATCGTCCTCGATGTATGT-AGTTAGTGTAACACCTGTCT
** *
51323351 GGGACATGGCATCAACTTAGATGTGAGAGCC
65 AAGACATGGCATCAACATAGATGTGAGAGCC
*
51323382 AATGTAAGACC
1 AGTGTAAGACC
51323393 ATGTTTGGAA
Statistics
Matches: 91, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
93 28 0.31
94 4 0.04
95 1 0.01
96 22 0.24
98 36 0.40
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (95 bp):
AGTGTAAGACCTGTCTAGGACATGGCATCGTCCTCGATGTATGTAGTTAGTGTAACACCTGTCTA
AGACATGGCATCAACATAGATGTGAGAGCC
Found at i:51330924 original size:49 final size:49
Alignment explanation
Indices: 51330863--51330969 Score: 144
Period size: 49 Copynumber: 2.2 Consensus size: 49
51330853 TATAATCAAT
* *
51330863 ATGGCATTGGCCTCAAGGTATGCAAG-CTAGTGTAAGACCTGTCTGGGAC
1 ATGGCATCGGCCTCAAGGTATGCAAGTC-AGTGTAAGACCTGTCTAGGAC
* * *
51330912 ATGGCATCGGCCTCGATGTATGTAAGTCAGTGTAAGACCTGTCTAGGAC
1 ATGGCATCGGCCTCAAGGTATGCAAGTCAGTGTAAGACCTGTCTAGGAC
*
51330961 ATGCCATCG
1 ATGGCATCG
51330970 ACTTAAATGT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
49 50 0.98
50 1 0.02
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.25
Consensus pattern (49 bp):
ATGGCATCGGCCTCAAGGTATGCAAGTCAGTGTAAGACCTGTCTAGGAC
Found at i:51332965 original size:23 final size:23
Alignment explanation
Indices: 51332939--51333314 Score: 636
Period size: 23 Copynumber: 16.4 Consensus size: 23
51332929 ACATAAGTGC
51332939 ACCACTGATATGTAGCCGAAGCT
1 ACCACTGATATGTAGCCGAAGCT
51332962 ACCACTGATATGTAGCCGAAGCT
1 ACCACTGATATGTAGCCGAAGCT
51332985 ACCACTGATATGTAGCCGAAGCT
1 ACCACTGATATGTAGCCGAAGCT
51333008 ACCACTGATATGTAGCCGAAGCT
1 ACCACTGATATGTAGCCGAAGCT
51333031 ACCACTGATATGTAGCCGAAGCT
1 ACCACTGATATGTAGCCGAAGCT
51333054 ACCACTGATATGTAGCCGAAGCT
1 ACCACTGATATGTAGCCGAAGCT
51333077 ACCACTGATATGTAGCCGAAGCT
1 ACCACTGATATGTAGCCGAAGCT
51333100 ACCACTGATATGTAGCCGAAGCT
1 ACCACTGATATGTAGCCGAAGCT
51333123 ACCACTGATATGTAGCCGAAGCT
1 ACCACTGATATGTAGCCGAAGCT
51333146 ACCACTGATATGTAGCCGAAGCT
1 ACCACTGATATGTAGCCGAAGCT
51333169 ACCACTGATATGTAGCCGAAGCT
1 ACCACTGATATGTAGCCGAAGCT
*
51333192 ACCAC-GAT-T-TAGCACATAAG-T
1 ACCACTGATATGTAGC-C-GAAGCT
*
51333213 GCCACACTGATATGTAGCCGAAGCT
1 -AC-CACTGATATGTAGCCGAAGCT
51333238 ACCACTGATATGTAGCCGAAGCT
1 ACCACTGATATGTAGCCGAAGCT
* *
51333261 ACCACTG-GATGTAGCCAAAGCT
1 ACCACTGATATGTAGCCGAAGCT
*
51333283 ACCACTGAAATGTAGCCGAAGCT
1 ACCACTGATATGTAGCCGAAGCT
51333306 ACCACTGAT
1 ACCACTGAT
51333315 CAATAACACT
Statistics
Matches: 335, Mismatches: 9, Indels: 18
0.93 0.02 0.05
Matches are distributed among these distances:
20 4 0.01
21 3 0.01
22 27 0.08
23 287 0.86
24 7 0.02
25 3 0.01
26 4 0.01
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.21
Consensus pattern (23 bp):
ACCACTGATATGTAGCCGAAGCT
Found at i:51335622 original size:18 final size:17
Alignment explanation
Indices: 51335589--51335627 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
51335579 TTGTATAAAT
51335589 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
51335607 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
51335624 TGTG
1 TGTG
51335628 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:51335880 original size:23 final size:23
Alignment explanation
Indices: 51335854--51335927 Score: 114
Period size: 23 Copynumber: 3.3 Consensus size: 23
51335844 GTGTTTTTGA
51335854 TCAGTGGTAGCTTCGGCTACATT
1 TCAGTGGTAGCTTCGGCTACATT
*
51335877 TCAGTGGTAGCTTTGGCTACA-T
1 TCAGTGGTAGCTTCGGCTACATT
* *
51335899 CCAGTGGTAGCTTCGGCTACATA
1 TCAGTGGTAGCTTCGGCTACATT
51335922 TCAGTG
1 TCAGTG
51335928 TGGCACTTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
22 20 0.44
23 25 0.56
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.32
Consensus pattern (23 bp):
TCAGTGGTAGCTTCGGCTACATT
Found at i:51335906 original size:22 final size:22
Alignment explanation
Indices: 51335855--51335920 Score: 105
Period size: 22 Copynumber: 3.0 Consensus size: 22
51335845 TGTTTTTGAT
*
51335855 CAGTGGTAGCTTCGGCTACATTT
1 CAGTGGTAGCTTCGGCTACA-TC
*
51335878 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATC
51335900 CAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACAT
51335921 ATCAGTGTGG
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
22 21 0.52
23 19 0.47
ACGTcount: A:0.18, C:0.23, G:0.27, T:0.32
Consensus pattern (22 bp):
CAGTGGTAGCTTCGGCTACATC
Found at i:51339929 original size:39 final size:39
Alignment explanation
Indices: 51339858--51340768 Score: 1754
Period size: 39 Copynumber: 23.3 Consensus size: 39
51339848 GCTCCTCGTT
* * *
51339858 CAAATGCCTTCGGGACATAGCCTGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
51339898 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
51339937 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
51339976 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
51340015 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
51340054 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
51340093 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
51340132 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
51340171 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
51340210 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
51340249 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
51340288 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
51340327 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
51340366 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
51340405 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
51340444 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
51340483 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
51340522 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
51340561 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
51340600 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
51340639 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
51340678 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
51340717 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
51340756 CAAATGCCTTCGG
1 CAAATGCCTTCGG
51340769 ATCTTAGTCC
Statistics
Matches: 866, Mismatches: 3, Indels: 5
0.99 0.00 0.01
Matches are distributed among these distances:
38 2 0.00
39 849 0.98
40 15 0.02
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:51352547 original size:12 final size:12
Alignment explanation
Indices: 51352530--51352559 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
51352520 CCACCATCCA
51352530 GTGAGCTCCCCG
1 GTGAGCTCCCCG
*
51352542 GTGAGCTCTCCG
1 GTGAGCTCCCCG
51352554 GTGAGC
1 GTGAGC
51352560 CTCAACATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.10, C:0.33, G:0.37, T:0.20
Consensus pattern (12 bp):
GTGAGCTCCCCG
Found at i:51357969 original size:27 final size:27
Alignment explanation
Indices: 51357917--51357970 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
51357907 ATAAGAGGAT
* **
51357917 TAGTTCTTCATGGAATCTGTAAACACA
1 TAGTTCCTCATGGAATCCATAAACACA
*
51357944 TAGTTCCTCATGGAATCCATATACACA
1 TAGTTCCTCATGGAATCCATAAACACA
51357971 ATAAACTTGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.31
Consensus pattern (27 bp):
TAGTTCCTCATGGAATCCATAAACACA
Found at i:51358190 original size:19 final size:19
Alignment explanation
Indices: 51358162--51358198 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
51358152 CAAAAAAACT
51358162 AAAAACTAAAATA-CAAAG
1 AAAAACTAAAATATCAAAG
51358180 AAAAACTTAAAATATCAAA
1 AAAAAC-TAAAATATCAAA
51358199 AGTTATCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 7 0.41
20 4 0.24
ACGTcount: A:0.70, C:0.11, G:0.03, T:0.16
Consensus pattern (19 bp):
AAAAACTAAAATATCAAAG
Found at i:51360330 original size:50 final size:50
Alignment explanation
Indices: 51360274--51360499 Score: 218
Period size: 50 Copynumber: 4.6 Consensus size: 50
51360264 AGATGTGCCC
*
51360274 GTGTAAGACCATGTCTGGAATATGGCATCGGCAC-GGATATGTGAGAGCTA
1 GTGTAAGACCATGTCTGGAACATGGCATCGGCACTGGATAT-TGAGAGCTA
* * * *
51360324 GTGTAAGACCATGTCTAGG-ATATGGAATTGGCAC-GGATATGTGAGAGTTA
1 GTGTAAGACCATGTCT-GGAACATGGCATCGGCACTGGATAT-TGAGAGCTA
* * * * *
51360374 GTGTAAGACCATGTCTGGGACATGGCGTTGGC-CTCGAT-TTCGATAGCTA
1 GTGTAAGACCATGTCTGGAACATGGCATCGGCACTGGATATT-GAGAGCTA
* *
51360423 GTGTAAGACCATGTCTAGAACATGGCATC-G-ACTTGATA--GATGAGCTA
1 GTGTAAGACCATGTCTGGAACATGGCATCGGCACTGGATATTGA-GAGCTA
* *
51360470 GTGTAAGACCATGTCTGGGACATGACATCG
1 GTGTAAGACCATGTCTGGAACATGGCATCG
51360500 ACATTATACC
Statistics
Matches: 150, Mismatches: 18, Indels: 18
0.81 0.10 0.10
Matches are distributed among these distances:
46 2 0.01
47 31 0.21
48 7 0.05
49 35 0.23
50 73 0.49
51 2 0.01
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.26
Consensus pattern (50 bp):
GTGTAAGACCATGTCTGGAACATGGCATCGGCACTGGATATTGAGAGCTA
Found at i:51360399 original size:100 final size:96
Alignment explanation
Indices: 51360274--51360499 Score: 235
Period size: 99 Copynumber: 2.3 Consensus size: 96
51360264 AGATGTGCCC
* * *
51360274 GTGTAAGACCATGTCTGGAATATGGCATCGGCAC-GGATATGT-GAGAGCTAGTGTAAGACCATG
1 GTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAT-T-TCGAGAGCTAGTGTAAGACCATG
* * * *
51360337 TCTAGGATATGGAATTGGCAC-GGATATG-TGAGAGTTA
63 TCTAGAACATGGAA-TCG-ACTGGATA-GAT--GAGCTA
* * *
51360374 GTGTAAGACCATGTCTGGGACATGGCGTTGGCCTCGATTTCGATAGCTAGTGTAAGACCATGTCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTCGAGAGCTAGTGTAAGACCATGTCT
* *
51360439 AGAACATGGCATCGACTTGATAGATGAGCTA
66 AGAACATGGAATCGACTGGATAGATGAGCTA
*
51360470 GTGTAAGACCATGTCTGGGACATGACATCG
1 GTGTAAGACCATGTCTGGGACATGGCATCG
51360500 ACATTATACC
Statistics
Matches: 107, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
96 32 0.30
97 3 0.03
98 8 0.07
99 33 0.31
100 31 0.29
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.26
Consensus pattern (96 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTCGAGAGCTAGTGTAAGACCATGTCT
AGAACATGGAATCGACTGGATAGATGAGCTA
Found at i:51384494 original size:2 final size:2
Alignment explanation
Indices: 51384487--51384511 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
51384477 ACTTTTCATT
51384487 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
51384512 TGCTTTACCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:51393519 original size:14 final size:14
Alignment explanation
Indices: 51393502--51393529 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
51393492 TTAAAGTAAG
51393502 AATTAAGAACAAAT
1 AATTAAGAACAAAT
51393516 AATTAAGAACAAAT
1 AATTAAGAACAAAT
51393530 CAAGTATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.07, G:0.07, T:0.21
Consensus pattern (14 bp):
AATTAAGAACAAAT
Found at i:51394699 original size:12 final size:12
Alignment explanation
Indices: 51394682--51394706 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
51394672 AACTAAATAG
51394682 AAAAATACTAAA
1 AAAAATACTAAA
51394694 AAAAATACTAAA
1 AAAAATACTAAA
51394706 A
1 A
51394707 CTGACAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAAATACTAAA
Found at i:51397589 original size:37 final size:37
Alignment explanation
Indices: 51397546--51397624 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
51397536 CCGACCTCTA
* * *
51397546 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGAGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGAGT
* *
51397583 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGAGT
51397620 AAGAC
1 AAGAC
51397625 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGAGT
Found at i:51399374 original size:7 final size:6
Alignment explanation
Indices: 51399326--51399393 Score: 50
Period size: 6 Copynumber: 11.3 Consensus size: 6
51399316 TATTAAAGAG
** * * * *
51399326 AAAT-A AAATAA AAAT-A ATTTAA AAAGAT AAATAA AGATAA AAGTAAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAAT-AA
51399373 AAATAA AAATAA TAAATAA AA
1 AAATAA AAATAA -AAATAA AA
51399394 GTCTTCAAAA
Statistics
Matches: 47, Mismatches: 12, Indels: 7
0.71 0.18 0.11
Matches are distributed among these distances:
5 7 0.15
6 29 0.62
7 11 0.23
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.21
Consensus pattern (6 bp):
AAATAA
Found at i:51399380 original size:13 final size:13
Alignment explanation
Indices: 51399362--51399395 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
51399352 ATAAATAAAG
51399362 ATAAAAGTAAAAA
1 ATAAAAGTAAAAA
* *
51399375 ATAAAAATAATAA
1 ATAAAAGTAAAAA
51399388 ATAAAAGT
1 ATAAAAGT
51399396 CTTCAAAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.21
Consensus pattern (13 bp):
ATAAAAGTAAAAA
Found at i:51400713 original size:29 final size:30
Alignment explanation
Indices: 51400681--51400737 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
51400671 ACCATGAATA
* *
51400681 TAATTAAACTAACAA-ATTCAACCAAAAAC
1 TAATGAAACTAACAATACTCAACCAAAAAC
51400710 TAATGAAACTAACAATACTCAACCAAAA
1 TAATGAAACTAACAATACTCAACCAAAA
51400738 GTAATCGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.58, C:0.21, G:0.02, T:0.19
Consensus pattern (30 bp):
TAATGAAACTAACAATACTCAACCAAAAAC
Found at i:51406937 original size:53 final size:54
Alignment explanation
Indices: 51406867--51407063 Score: 182
Period size: 55 Copynumber: 3.6 Consensus size: 54
51406857 AACTTACCAT
* * * * *
51406867 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACTAT
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAATTACTAA
* * * * **
51406920 TGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCGTAGTTTA-TCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG-AAATTACT-AA
* * * * * * *
51406975 TGCCATGTCTTGACATGGTCTTATATGATTTCCTTGCCTTGTAAAAATTACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAATTACTAA
* *
51407029 TGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
51407064 AAACCCTAAT
Statistics
Matches: 112, Mismatches: 28, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
53 37 0.33
54 37 0.33
55 38 0.34
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.39
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAATTACTAA
Found at i:51411406 original size:25 final size:25
Alignment explanation
Indices: 51411368--51411419 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
51411358 AAATTTTGAG
*
51411368 TTAAATTATGCAATTGGTCCTCGTA
1 TTAAATTATACAATTGGTCCTCGTA
51411393 TTAAATTATACAATTGGTCCTCGTA
1 TTAAATTATACAATTGGTCCTCGTA
51411418 TT
1 TT
51411420 TTTTTCTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.29, C:0.15, G:0.13, T:0.42
Consensus pattern (25 bp):
TTAAATTATACAATTGGTCCTCGTA
Found at i:51412556 original size:33 final size:33
Alignment explanation
Indices: 51412472--51412556 Score: 109
Period size: 33 Copynumber: 2.6 Consensus size: 33
51412462 TAGTTTTAAC
** *
51412472 AAATGAAAAATATAG-AAAAATTACGTTGAAAG
1 AAATGAAAAATGGAGAAAAAATTACGTTAAAAG
* * *
51412504 AAATGAAGAAGGGATAAAAAATTACGTTAAAAG
1 AAATGAAAAATGGAGAAAAAATTACGTTAAAAG
51412537 AAATGAAAAATGGAGAAAAA
1 AAATGAAAAATGGAGAAAAA
51412557 CAGAAGAAGA
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
32 10 0.23
33 33 0.77
ACGTcount: A:0.61, C:0.02, G:0.19, T:0.18
Consensus pattern (33 bp):
AAATGAAAAATGGAGAAAAAATTACGTTAAAAG
Found at i:51424754 original size:26 final size:26
Alignment explanation
Indices: 51424725--51424832 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
51424715 TGGTACAAAT
51424725 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
51424751 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
51424777 TGATAATGGGTTAGATAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
51424803 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
51424829 TGAT
1 TGAT
51424833 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:51427820 original size:177 final size:177
Alignment explanation
Indices: 51427490--51427820 Score: 459
Period size: 177 Copynumber: 1.9 Consensus size: 177
51427480 ACATGCTCTT
* * *
51427490 TTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATTACCAATACATGGAGATAAG
1 TTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTACTCCATTACCAATACATAGAGATAAG
* * * * *
51427555 ATTCGCTGTCTTCAATCTGCTCCATTACTATTTAGGGAGATAAGATCTGCAATTTTTAGTCTGCT
66 ATTCACAGTCTTCAATCTGCTCCACTACTATTTAGGGAGATAAGATCTGCAATTTTCAGTCTACT
* * *
51427620 TCCTTGCTACCTCAGGAAGATAAGGCTTGTACCTTCAACCTGCTTTC
131 TCCCTACAACCTCAGGAAGATAAGGCTTGTACCTTCAACCTGCTTTC
* *
51427667 TTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTACTCCATTGCCGATACATAGAGATAAG
1 TTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTACTCCATTACCAATACATAGAGATAAG
* * * *
51427732 ATTCACAGTCTTCGATCTGCTCCACTATTACTTT-GGGAGATAAGATTTGTAATTTTCAGTCTAC
66 ATTCACAGTCTTCAATCTGCTCCACTACTA-TTTAGGGAGATAAGATCTGCAATTTTCAGTCTAC
* *
51427796 -TCCACTACAACTTCAGGGAGATAAG
130 TTCC-CTACAACCTCAGGAAGATAAG
51427821 ATCTGTAATT
Statistics
Matches: 133, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
176 3 0.02
177 127 0.95
178 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (177 bp):
TTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTACTCCATTACCAATACATAGAGATAAG
ATTCACAGTCTTCAATCTGCTCCACTACTATTTAGGGAGATAAGATCTGCAATTTTCAGTCTACT
TCCCTACAACCTCAGGAAGATAAGGCTTGTACCTTCAACCTGCTTTC
Found at i:51427822 original size:45 final size:45
Alignment explanation
Indices: 51427766--51427910 Score: 193
Period size: 45 Copynumber: 3.2 Consensus size: 45
51427756 CTATTACTTT
*
51427766 GGGAGATAAGATTTGTAATTTTCAGTCTACTCCACTACAACTTCA
1 GGGAGATAAGATTTGTAATTTTCAGTCTACTCCACTGCAACTTCA
*
51427811 GGGAGATAAGATCTGTAATTTTCAGTCTACTCCACTGCAACTTCA
1 GGGAGATAAGATTTGTAATTTTCAGTCTACTCCACTGCAACTTCA
* * * * ** * *
51427856 GGGAGATAAGACTGGT-ATCTTGAACCTGCTCCACTGTAACTTCA
1 GGGAGATAAGATTTGTAATTTTCAGTCTACTCCACTGCAACTTCA
51427900 GGGAGATAAGA
1 GGGAGATAAGA
51427911 CTGGTGGCTT
Statistics
Matches: 89, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
44 33 0.37
45 56 0.63
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (45 bp):
GGGAGATAAGATTTGTAATTTTCAGTCTACTCCACTGCAACTTCA
Found at i:51427908 original size:222 final size:222
Alignment explanation
Indices: 51427588--51428015 Score: 549
Period size: 222 Copynumber: 1.9 Consensus size: 222
51427578 ATTACTATTT
* * * * * *
51427588 AGGGAGATAAGATCTGCAATTTTTAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGGCTTGTACC
1 AGGGAGATAAGATCTGCAATTTTCAGTCTACTTCCCTGCAACCTCAGGAAGATAAGACTGGTACC
* * *
51427653 TTCAACCTGCTTTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTACTCCATTGCCGA
66 TTCAACCTGCTTCCCTGCTACCTCAGAGAGATAAGACTAGTGGCTAAAATCTACTCCATTGCCGA
* * * * *
51427718 TACATAGAGATAAGATTC-ACAGTCTTCGATCTGCTCCACTATTACTTTGGGAGATAAGATTTGT
131 TACATAGAGATAAGATCCGAC-GTCTTCGATCTGCTCCACTACTACTTAGAGAGATAAGATCTGT
51427782 AATTTTCAGTCTACTCCACTACAACTTC
195 AATTTTCAGTCTACTCCACTACAACTTC
* * * *
51427810 AGGGAGATAAGATCTGTAATTTTCAGTCTAC-TCCACTGCAACTTCAGGGAGATAAGACTGGTAT
1 AGGGAGATAAGATCTGCAATTTTCAGTCTACTTCC-CTGCAACCTCAGGAAGATAAGACTGGTAC
* * * * * *
51427874 CTTGAACCTGC-TCCACTG-TAACTTCAGGGAGATAAGACTGGTGGCTTAAATCTATTCCATTGC
65 CTTCAACCTGCTTCC-CTGCT-ACCTCAGAGAGATAAGACTAGTGGCTAAAATCTACTCCATTGC
* * *
51427937 CGATACATGGAGATAAGATCCGTCGTCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCT
128 CGATACATAGAGATAAGATCCGACGTCTTCGATCTGCTCCACTACTACTTAGAGAGATAAGATCT
51428002 GTAATTTTCAGTCT
193 GTAATTTTCAGTCT
51428016 GTTTCATTGC
Statistics
Matches: 175, Mismatches: 27, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
221 6 0.03
222 168 0.96
223 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.31
Consensus pattern (222 bp):
AGGGAGATAAGATCTGCAATTTTCAGTCTACTTCCCTGCAACCTCAGGAAGATAAGACTGGTACC
TTCAACCTGCTTCCCTGCTACCTCAGAGAGATAAGACTAGTGGCTAAAATCTACTCCATTGCCGA
TACATAGAGATAAGATCCGACGTCTTCGATCTGCTCCACTACTACTTAGAGAGATAAGATCTGTA
ATTTTCAGTCTACTCCACTACAACTTC
Found at i:51428043 original size:177 final size:178
Alignment explanation
Indices: 51427795--51428539 Score: 953
Period size: 177 Copynumber: 4.2 Consensus size: 178
51427785 TTTCAGTCTA
** * * * * * * **
51427795 CTCCACTACAACTTCAGGGAGATAAGATCTGTAATTTTCAGTCTACTCCACTGCAACTTCAGGGA
1 CTCCACTACTGCTT-AGGGAGATAAGATCTGTAATTTTCAGTCTGCTTCATTACTACCTCAGAAA
* * * * * * *
51427860 GATAAGACTGGTATCTTGAACCTGCTC-CACTG-TAACTTCAGGGAGATAAGACTGGTGGCTTAA
65 GATAAGACTTGTATCTTCAACCTACTCTC-TTGCTAACTTCAGAGAGATAAGGCTGGTGGCTAAA
** * *
51427923 ATCTATTCCATTGCCGATACATGGAGATAAGATCCGTCGTCTTCGATCTG
129 ATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCGTCTTCGATCTG
* * *
51427973 CTCCACTACTGCTTAGAGAGATAAGATCTGTAATTTTCAGTCTGTTTCATTGCTACCTCAGAAAG
1 CTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGTCTGCTTCATTACTACCTCAGAAAG
** * * *
51428038 ATAAGACTTGTATCTTCAACCTGTTCTCTTGCTATC-TCAGAGAGATAGGGCTAGTGGCTAAAAT
66 ATAAGACTTGTATCTTCAACCTACTCTCTTGCTAACTTCAGAGAGATAAGGCTGGTGGCTAAAAT
* * *
51428102 CTGCTTCATTGTCGATACATGGAGATAAGATTTGCCGTCTTCGATCTG
131 CTGCTCCATTGCCGATACATGGAGATAAGATTCGCCGTCTTCGATCTG
* * *
51428150 CTCCACTATTGCTTAGGGAGATAAGATCTGCAATTTTCAGTCTGCTTTC-TTACTACCTTAGAAA
1 CTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGTCTGC-TTCATTACTACCTCAGAAA
* *
51428214 GATAAGACTTGTATCTTCAACCTACTCTCTTGCT-ACATCAGAGACATAAGGCTGGTGGCTAAAA
65 GATAAGACTTGTATCTTCAACCTACTCTCTTGCTAACTTCAGAGAGATAAGGCTGGTGGCTAAAA
* *
51428278 TCTGCTCCATTGCTGATACATGGAGATAAGATTCGCCATCTTCGATCTG
130 TCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCGTCTTCGATCTG
* * * * * *
51428327 CTTCACTATTGCTTAGGGAGATAAGATCTGCAATTTTCAGTCTGCTTCCTTACTACCTTAGGAAG
1 CTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGTCTGCTTCATTACTACCTCAGAAAG
* *
51428392 ATAAGACTTGTATCTTCAACCTACTCTCTTGCTACCTT-AGAGAGATAAGGTTGGTGGCTAAAAT
66 ATAAGACTTGTATCTTCAACCTACTCTCTTGCTAACTTCAGAGAGATAAGGCTGGTGGCTAAAAT
* * *
51428456 CTGCTCCATTGCTGATACATGGAGATAAGATTCGTCGTCTTCGATATG
131 CTGCTCCATTGCCGATACATGGAGATAAGATTCGCCGTCTTCGATCTG
*
51428504 CTCCACTACTACTTAGGGAGATAAGATCTGTGAATT
1 CTCCACTACTGCTTAGGGAGATAAGATCTGT-AATT
51428540 CACCGAGGTC
Statistics
Matches: 502, Mismatches: 58, Indels: 14
0.87 0.10 0.02
Matches are distributed among these distances:
176 4 0.01
177 473 0.94
178 25 0.05
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (178 bp):
CTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGTCTGCTTCATTACTACCTCAGAAAG
ATAAGACTTGTATCTTCAACCTACTCTCTTGCTAACTTCAGAGAGATAAGGCTGGTGGCTAAAAT
CTGCTCCATTGCCGATACATGGAGATAAGATTCGCCGTCTTCGATCTG
Found at i:51428396 original size:399 final size:397
Alignment explanation
Indices: 51427530--51428397 Score: 861
Period size: 399 Copynumber: 2.2 Consensus size: 397
51427520 TAAAATCTGC
* * * * * * *
51427530 TCCATTACCAATACATGGAGATAAGATTCG-CTGTCTTCAATCTGCTCCATTACTA-TTTAGGGA
1 TCCATTGCC-ATACAGGGAGATAAGATCCGTC-ATCTTCAGTCTGCTCC-TTACTACCTTAGGAA
* * * *
51427593 GATAAGATCTGCAATTTTTAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGGCTTGTACCTTCAA
63 GATAAGATCTGCAATTTTCAGTCTGCTTCATTGCTACCTCAGAAAGATAAGACTTGTACCTTCAA
51427658 CCTGCTTTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTACTCCATTGCCGATACAT
128 CCTGCTTTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTACTCCATTGCCGATACAT
* * *
51427723 AGAGATAAGATTCACAGTCTTCGATCTGCTCCACTATTACTTTGGGAGATAAGATTTGTAATTTT
193 AGAGATAAGATTCACAGTCTTCGATCTGCTCCACTATTACTTAGGGAGATAAGATCTGCAATTTT
** * ** *
51427788 CAGTCTACTCCACTACAACTTCAGGGAGATAAGATCTGTAATTTTCAGTCTACTCCACTGCAACT
258 CAGTCTACTCCACTAC-ACTTCAGAAAGATAAGATCTGTAATCTTCAACCTACTCCACTGCAACA
* * * ** * ***
51427853 TCAGGGAGATAAGACTGGTATCTTGAACCTGCTCCACTGTAACTTCAGGGAGATAAGACTGGTGG
322 TCAGAGACATAAGACTGGTAGCTAAAACCTGCTCCACTGTAACTACAGGGAGATAAGACTGCCAG
51427918 CTTAAATCTAT
387 CTTAAATCTAT
* *
51427929 TCCATTGCCGATACATGGAGATAAGATCCGTCGTCTTC-GATCTGCTCC--ACTACTGCTTA-GA
1 TCCATTGCC-ATACAGGGAGATAAGATCCGTCATCTTCAG-TCTGCTCCTTACTAC--CTTAGGA
* * *
51427990 GAGATAAGATCTGTAATTTTCAGTCTGTTTCATTGCTACCTCAGAAAGATAAGACTTGTATCTTC
62 -AGATAAGATCTGCAATTTTCAGTCTGCTTCATTGCTACCTCAGAAAGATAAGACTTGTACCTTC
* * * * *
51428055 AACCTG-TTCTCTTGCTATCTCAGAGAGATAGGGCTAGTGGCTAAAATCTGCTTCATTGTCGATA
126 AACCTGCTT-TCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTACTCCATTGCCGATA
* ** * *
51428119 CATGGAGATAAGATTTGCCGTCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGCAAT
190 CATAGAGATAAGATTCACAGTCTTCGATCTGCTCCACTATTACTTAGGGAGATAAGATCTGCAAT
* * *
51428184 TTTCAGTCTGCTTTCTTACTAC-CTT-AGAAAGATAAGA-CTTGT-ATCTTCAACCTACTCTC-T
255 TTTCAGTCTAC--TC-CACTACACTTCAGAAAGATAAGATC-TGTAATCTTCAACCTACTC-CAC
* * * * * * *
51428244 TGCTACATCAGAGACATAAGGCTGGTGGCTAAAATCTGCTCCATTGCTGA-TACATGGAGATAAG
315 TGCAACATCAGAGACATAAGACTGGTAGCTAAAACCTGCTCCACTG-TAACTACAGGGAGATAAG
* * ** *
51428308 ATTCGCCATCTTCGATCTGCT
379 ACT-GCCAGCTTAAATCT-AT
* * *
51428329 TCACTATTG-C-T-TAGGGAGATAAGATCTG-CAATTTTCAGTCTGCTTCCTTACTACCTTAGGA
1 TC-C-ATTGCCATACAGGGAGATAAGATCCGTC-ATCTTCAGTCTGC-TCCTTACTACCTTAGGA
51428390 AGATAAGA
62 AGATAAGA
51428398 CTTGTATCTT
Statistics
Matches: 385, Mismatches: 61, Indels: 46
0.78 0.12 0.09
Matches are distributed among these distances:
396 4 0.01
397 1 0.00
398 88 0.23
399 265 0.69
400 9 0.02
401 9 0.02
402 9 0.02
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (397 bp):
TCCATTGCCATACAGGGAGATAAGATCCGTCATCTTCAGTCTGCTCCTTACTACCTTAGGAAGAT
AAGATCTGCAATTTTCAGTCTGCTTCATTGCTACCTCAGAAAGATAAGACTTGTACCTTCAACCT
GCTTTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTACTCCATTGCCGATACATAGA
GATAAGATTCACAGTCTTCGATCTGCTCCACTATTACTTAGGGAGATAAGATCTGCAATTTTCAG
TCTACTCCACTACACTTCAGAAAGATAAGATCTGTAATCTTCAACCTACTCCACTGCAACATCAG
AGACATAAGACTGGTAGCTAAAACCTGCTCCACTGTAACTACAGGGAGATAAGACTGCCAGCTTA
AATCTAT
Found at i:51433173 original size:21 final size:20
Alignment explanation
Indices: 51433139--51433181 Score: 68
Period size: 21 Copynumber: 2.1 Consensus size: 20
51433129 AAATGAAATG
51433139 CAAGAAAAAGAATATTTGCT
1 CAAGAAAAAGAATATTTGCT
*
51433159 CAAGACAAAATAATATTTGCT
1 CAAGA-AAAAGAATATTTGCT
51433180 CA
1 CA
51433182 GAATAAGACA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.49, C:0.14, G:0.12, T:0.26
Consensus pattern (20 bp):
CAAGAAAAAGAATATTTGCT
Found at i:51436751 original size:19 final size:19
Alignment explanation
Indices: 51436727--51436772 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
51436717 ATGAAATTTT
* *
51436727 AATGCACATG-ATGCGATG
1 AATGCAAATGCATGAGATG
51436745 AAATGCAAATGCATGAGATG
1 -AATGCAAATGCATGAGATG
51436765 AATGCAAA
1 AATGCAAA
51436773 ACTAAAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.43, C:0.13, G:0.24, T:0.20
Consensus pattern (19 bp):
AATGCAAATGCATGAGATG
Found at i:51440676 original size:6 final size:6
Alignment explanation
Indices: 51440665--51440693 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
51440655 GTTCTCCCCA
51440665 CCCTCT CCCTCT CCCTCT CCCTCT CCCTC
1 CCCTCT CCCTCT CCCTCT CCCTCT CCCTC
51440694 CCAACATCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.69, G:0.00, T:0.31
Consensus pattern (6 bp):
CCCTCT
Found at i:51444369 original size:120 final size:120
Alignment explanation
Indices: 51444231--51444523 Score: 500
Period size: 120 Copynumber: 2.4 Consensus size: 120
51444221 AATTATTTTA
* * * *
51444231 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTT-TCTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT--AATTTATATT
*
51444294 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
64 TTACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
51444351 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTACTTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
51444416 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
51444471 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
51444524 NNNNNNNNNN
Statistics
Matches: 165, Mismatches: 6, Indels: 4
0.94 0.03 0.02
Matches are distributed among these distances:
119 4 0.02
120 159 0.96
121 2 0.01
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:51444391 original size:15 final size:15
Alignment explanation
Indices: 51444356--51444397 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
51444346 TTAAGAATTT
*
51444356 TATTAAATTAT-ATA
1 TATTTAATTATAATA
51444370 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
51444384 TATTTAATAATAAT
1 TATTTAATTATAAT
51444398 TATGTTACTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:51444511 original size:15 final size:15
Alignment explanation
Indices: 51444476--51444517 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
51444466 TTAAGAATTT
*
51444476 TATTAAATTAT-ATA
1 TATTTAATTATAATA
51444490 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
51444504 TATTTAATAATAAT
1 TATTTAATTATAAT
51444518 TATGTTNNNN
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:51445993 original size:11 final size:12
Alignment explanation
Indices: 51445951--51445999 Score: 50
Period size: 11 Copynumber: 4.2 Consensus size: 12
51445941 AGGAACAACA
*
51445951 ATAATAATATAT
1 ATAAGAATATAT
*
51445963 ATAA-AACA-ACT
1 ATAAGAATATA-T
51445974 ATAAGAATATAT
1 ATAAGAATATAT
51445986 ATAA-AATATAT
1 ATAAGAATATAT
51445997 ATA
1 ATA
51446000 TGTAGTATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
10 1 0.03
11 18 0.56
12 12 0.38
13 1 0.03
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (12 bp):
ATAAGAATATAT
Found at i:51445999 original size:23 final size:23
Alignment explanation
Indices: 51445944--51445991 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
51445934 ATATATTAGG
* *
51445944 AACAACAATAATAATATATATAA
1 AACAACTATAAGAATATATATAA
51445967 AACAACTATAAGAATATATATAA
1 AACAACTATAAGAATATATATAA
51445990 AA
1 AA
51445992 TATATATATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.65, C:0.08, G:0.02, T:0.25
Consensus pattern (23 bp):
AACAACTATAAGAATATATATAA
Found at i:51446049 original size:19 final size:20
Alignment explanation
Indices: 51446012--51446053 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
51446002 TAGTATTAAT
51446012 TAAAAATGTTTAAATAATAA
1 TAAAAATGTTTAAATAATAA
51446032 TAAAATATG-TTAAA-AATAA
1 TAAAA-ATGTTTAAATAATAA
51446051 TAA
1 TAA
51446054 TACAAGAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 8 0.38
20 10 0.48
21 3 0.14
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (20 bp):
TAAAAATGTTTAAATAATAA
Found at i:51447155 original size:18 final size:18
Alignment explanation
Indices: 51447128--51447171 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
51447118 AGGTTAGTGG
*
51447128 GTTTTAGGTAGGTTATTT
1 GTTTTGGGTAGGTTATTT
51447146 GTTTTGGGTAGGTTATTT
1 GTTTTGGGTAGGTTATTT
51447164 GTTTTGGG
1 GTTTTGGG
51447172 CCCAAAATTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.11, C:0.00, G:0.34, T:0.55
Consensus pattern (18 bp):
GTTTTGGGTAGGTTATTT
Found at i:51447951 original size:88 final size:86
Alignment explanation
Indices: 51447838--51448011 Score: 251
Period size: 88 Copynumber: 2.0 Consensus size: 86
51447828 TGTAAATTTG
* * *
51447838 GCTTGTTACCTTACTGCTTAGGGGGTTAAAGCTCATTATCTTAGATCTGTTTCCCTACTGCTTA-
1 GCTTGTTACCCTACTACTTAGGGGGTTAAAGCTCATTACCTTAGATCTGTTTCCCTACTGCTTAT
51447902 GGGTGATAAGATCTATGAACTTCA
66 GGG-G-TAAGATCTATGAA-TTCA
* * *
51447926 GCTTGTTACCCTACTACTTAGGGGGTTAAAGCTCGTTGCCTTCGATCTGTTTCCCTACTGCTTAT
1 GCTTGTTACCCTACTACTTAGGGGGTTAAAGCTCATTACCTTAGATCTGTTTCCCTACTGCTTAT
*
51447991 GGGGTAAGATCTGTGAATTCA
66 GGGGTAAGATCTATGAATTCA
51448012 CTGATTCTAG
Statistics
Matches: 78, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
86 4 0.05
87 12 0.15
88 59 0.76
89 3 0.04
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.37
Consensus pattern (86 bp):
GCTTGTTACCCTACTACTTAGGGGGTTAAAGCTCATTACCTTAGATCTGTTTCCCTACTGCTTAT
GGGGTAAGATCTATGAATTCA
Done.