Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 157 of 310
Found at i:51447982 original size:44 final size:43
Alignment explanation
Indices: 51447849--51447995 Score: 138
Period size: 44 Copynumber: 3.3 Consensus size: 43
51447839 CTTGTTACCT
*
51447849 TACTGCTTAGGGGGTTAAAGCTCATT-ATCTTAGATCTGTTTCCC
1 TACTGCTTAGGGGGTTAAAGCTC-TTGA-CTTCGATCTGTTTCCC
* * * * *
51447893 TACTGCTTAGGGTGAT-AAGATCTATGAACTTC-AGCTTGTTACCC
1 TACTGCTTAGGGGGTTAAAGCTCT-TG-ACTTCGATC-TGTTTCCC
* *
51447937 TACTACTTAGGGGGTTAAAGCTCGTTGCCTTCGATCTGTTTCCC
1 TACTGCTTAGGGGGTTAAAGCTC-TTGACTTCGATCTGTTTCCC
*
51447981 TACTGCTTATGGGGT
1 TACTGCTTAGGGGGT
51447996 AAGATCTGTG
Statistics
Matches: 81, Mismatches: 15, Indels: 14
0.74 0.14 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.10
44 61 0.75
45 10 0.12
46 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.37
Consensus pattern (43 bp):
TACTGCTTAGGGGGTTAAAGCTCTTGACTTCGATCTGTTTCCC
Found at i:51459468 original size:24 final size:25
Alignment explanation
Indices: 51459435--51459496 Score: 65
Period size: 24 Copynumber: 2.5 Consensus size: 25
51459425 AAAAAAACAT
*
51459435 TACATAAATATATATTGAAAA-TAGA
1 TACAT-AATATATATTGAAAAGCAGA
* * *
51459460 TATATAATA-ATATTTAAAAGCATA
1 TACATAATATATATTGAAAAGCAGA
51459484 TACATAATATATA
1 TACATAATATATA
51459497 CATAATATAC
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
23 9 0.30
24 14 0.47
25 7 0.23
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.35
Consensus pattern (25 bp):
TACATAATATATATTGAAAAGCAGA
Found at i:51459506 original size:9 final size:11
Alignment explanation
Indices: 51459481--51459505 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
51459471 ATTTAAAAGC
51459481 ATATACATAAT
1 ATATACATAAT
51459492 ATATACATAAT
1 ATATACATAAT
51459503 ATA
1 ATA
51459506 CGAAACAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (11 bp):
ATATACATAAT
Found at i:51459575 original size:19 final size:18
Alignment explanation
Indices: 51459538--51459578 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
51459528 ATATTAAAAC
* *
51459538 ATATACATGACATACATA
1 ATATACATGAAAAACATA
51459556 ATATACATGATAAAACATA
1 ATATACATGA-AAAACATA
51459575 ATAT
1 ATAT
51459579 GATATTTACA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.54, C:0.12, G:0.05, T:0.29
Consensus pattern (18 bp):
ATATACATGAAAAACATA
Found at i:51459995 original size:19 final size:20
Alignment explanation
Indices: 51459958--51459999 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
51459948 TAGTATTAAT
51459958 TAAAAATGTTTAAATAATAA
1 TAAAAATGTTTAAATAATAA
51459978 TAAAATATG-TTAAA-AATAA
1 TAAAA-ATGTTTAAATAATAA
51459997 TAA
1 TAA
51460000 TACAAGAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 8 0.38
20 10 0.48
21 3 0.14
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (20 bp):
TAAAAATGTTTAAATAATAA
Found at i:51463181 original size:15 final size:15
Alignment explanation
Indices: 51463144--51463184 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
51463134 TTAATTTTTT
51463144 TATACTAATAAATAA
1 TATACTAATAAATAA
*
51463159 TA-AGTAATGAAATAA
1 TATACTAAT-AAATAA
51463174 TATA-TAATAAA
1 TATACTAATAAA
51463185 AGGAAGATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
14 8 0.35
15 14 0.61
16 1 0.04
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (15 bp):
TATACTAATAAATAA
Found at i:51463440 original size:13 final size:13
Alignment explanation
Indices: 51463415--51463448 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
51463405 TAAAATATAT
51463415 AATGTAT-AATAA
1 AATGTATAAATAA
*
51463427 AATTTATAAATAA
1 AATGTATAAATAA
51463440 AATGTATAA
1 AATGTATAA
51463449 TAATAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 6 0.32
13 13 0.68
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (13 bp):
AATGTATAAATAA
Found at i:51463450 original size:12 final size:12
Alignment explanation
Indices: 51463415--51463451 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
51463405 TAAAATATAT
51463415 AATGTATAATAA
1 AATGTATAATAA
*
51463427 AATTTATAAATAA
1 AATGTAT-AATAA
51463440 AATGTATAATAA
1 AATGTATAATAA
51463452 TAAAAATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.35
Consensus pattern (12 bp):
AATGTATAATAA
Found at i:51463460 original size:25 final size:24
Alignment explanation
Indices: 51463407--51463474 Score: 59
Period size: 25 Copynumber: 2.8 Consensus size: 24
51463397 ATATGTAGTA
*
51463407 AAAT-ATATAATGTATAATAAAAT
1 AAATAATAAAATGTATAATAAAAT
**
51463430 TTATAAATAAAATGTATAATAATAA-
1 AAAT-AATAAAATGTATAATAA-AAT
* *
51463455 AAATAATATAATGAATAATA
1 AAATAATAAAATGTATAATA
51463475 TTTAAATAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
23 2 0.06
24 14 0.40
25 17 0.49
26 2 0.06
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (24 bp):
AAATAATAAAATGTATAATAAAAT
Found at i:51463471 original size:12 final size:12
Alignment explanation
Indices: 51463411--51463475 Score: 51
Period size: 12 Copynumber: 5.3 Consensus size: 12
51463401 GTAGTAAAAT
51463411 ATATAATGTATA
1 ATATAATGTATA
* *
51463423 ATAAAATTTATAA
1 ATATAATGTAT-A
*
51463436 ATAAAATGTATA
1 ATATAATGTATA
**
51463448 ATAATAA-AAATA
1 AT-ATAATGTATA
*
51463460 ATATAATGAATA
1 ATATAATGTATA
51463472 ATAT
1 ATAT
51463476 TTAAATAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
11 4 0.09
12 25 0.58
13 14 0.33
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (12 bp):
ATATAATGTATA
Found at i:51465166 original size:44 final size:44
Alignment explanation
Indices: 51465118--51465539 Score: 476
Period size: 44 Copynumber: 9.6 Consensus size: 44
51465108 CAAACTCAAG
* *
51465118 AACGCCAAATCTATTATCCTT-GATCTGCTCTTTGACAATACAGA
1 AACGCCAAATCTGTTAT-CTTCGATCTGCTCTCTGACAATACAGA
** * * *
51465162 AACGCCAAATCTACTATTTTCAATCTGCTCTCTAACAATACAGA
1 AACGCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGA
* * * * *
51465206 GACGCCAAACCCGCTATTTTCGATCTGCTCTCTGACAATACA-A
1 AACGCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGA
* * * *
51465249 AGACGCCAAATCAGCTATCTTTGATCTGCTCTCTGACAATATAGA
1 A-ACGCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGA
* * * * *
51465294 GACACCAGATCTGTTATCTTCGATCTGCTCTTTGATAATACAGA
1 AACGCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGA
* * * *
51465338 GATGCCAAATCTGTCATCTTCGATCTGCTTTCT-ATCAATACA-A
1 AACGCCAAATCTGTTATCTTCGATCTGCTCTCTGA-CAATACAGA
* * *
51465381 AGACGCCAAATCTATTATCTTCGATCTACTCTCTGTCAATACA-A
1 A-ACGCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGA
51465425 AGACGCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGA
1 A-ACGCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGA
* * *
51465470 GACGCCAAATCTGTTCTCTTCGATCTGCTCTTTGACAATACAGA
1 AACGCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGA
*
51465514 GACGCCAAATCTGTTATCTTCGATCT
1 AACGCCAAATCTGTTATCTTCGATCT
51465540 ACATTGTCTC
Statistics
Matches: 324, Mismatches: 47, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
43 5 0.02
44 317 0.98
45 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (44 bp):
AACGCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGA
Found at i:51465335 original size:132 final size:131
Alignment explanation
Indices: 51465119--51465539 Score: 533
Period size: 132 Copynumber: 3.2 Consensus size: 131
51465109 AAACTCAAGA
* * ** *
51465119 ACGCCAAATCTATTATCCTT-GATCTGCTCTTTGACAATACAGAAACGCCAAATCTACTATTTTC
1 ACGCCAAATCTATTAT-CTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGTTATCTTC
* * * * *
51465183 AATCTGCTCTCTAACAATACAGAGACGCCAAACCCGCTATTTTCGATCTGCTCTCTGACAATACA
65 GATCTGCTCTCTGACAATACAGAGACGCCAAATCTG-TATCTTCGATCTGCTCTCTGACAATACA
51465248 AAG
129 AAG
* * * * *
51465251 ACGCCAAATC-AGCTATCTTTGATCTGCTCTCTGACAATATAGAGACACCAGATCTGTTATCTTC
1 ACGCCAAATCTA-TTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGTTATCTTC
* * * *
51465315 GATCTGCTCTTTGATAATACAGAGATGCCAAATCTGTCATCTTCGATCTGCTTTCT-ATCAATAC
65 GATCTGCTCTCTGACAATACAGAGACGCCAAATCTGT-ATCTTCGATCTGCTCTCTGA-CAATAC
51465379 AAAG
128 AAAG
* * *
51465383 ACGCCAAATCTATTATCTTCGATCTACTCTCTGTCAATACAAAGACGCCAAATCTGTTATCTTCG
1 ACGCCAAATCTATTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGTTATCTTCG
* * *
51465448 ATCTGCTCTCTGACAATACAGAGACGCCAAATCTGTTCTCTTCGATCTGCTCTTTGACAATACAG
66 ATCTGCTCTCTGACAATACAGAGACGCCAAATCTG-TATCTTCGATCTGCTCTCTGACAATACAA
51465513 AG
130 AG
*
51465515 ACGCCAAATCTGTTATCTTCGATCT
1 ACGCCAAATCTATTATCTTCGATCT
51465540 ACATTGTCTC
Statistics
Matches: 248, Mismatches: 34, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
131 6 0.02
132 239 0.96
133 3 0.01
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (131 bp):
ACGCCAAATCTATTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGTTATCTTCG
ATCTGCTCTCTGACAATACAGAGACGCCAAATCTGTATCTTCGATCTGCTCTCTGACAATACAAA
G
Found at i:51477471 original size:15 final size:15
Alignment explanation
Indices: 51477434--51477474 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
51477424 TTAAATTTTT
51477434 TATACTAATAAATAA
1 TATACTAATAAATAA
*
51477449 TA-AGTAATGAAATAA
1 TATACTAAT-AAATAA
51477464 TATA-TAATAAA
1 TATACTAATAAA
51477475 AGGAAGATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
14 8 0.35
15 14 0.61
16 1 0.04
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (15 bp):
TATACTAATAAATAA
Found at i:51477755 original size:30 final size:28
Alignment explanation
Indices: 51477721--51477784 Score: 67
Period size: 30 Copynumber: 2.1 Consensus size: 28
51477711 TAATAAAATT
51477721 TATA-AATAATATGTATAATAATAAAAATAA
1 TATAGAATAATATGTA-AAT-A-AAAAATAA
*
51477751 TATAATGAATAATATTTAAATAAAAAATAA
1 TAT-A-GAATAATATGTAAATAAAAAATAA
51477781 TATA
1 TATA
51477785 TACTATTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
29 1 0.03
30 14 0.47
31 2 0.07
32 3 0.10
33 10 0.33
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (28 bp):
TATAGAATAATATGTAAATAAAAAATAA
Found at i:51477761 original size:21 final size:21
Alignment explanation
Indices: 51477724--51477764 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
51477714 TAAAATTTAT
*
51477724 AAATAATATGTATAATAATAA
1 AAATAATATGAATAATAATAA
51477745 AAATAATAT-AATGAATAATA
1 AAATAATATGAAT-AATAATA
51477765 TTTAAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (21 bp):
AAATAATATGAATAATAATAA
Found at i:51483402 original size:15 final size:15
Alignment explanation
Indices: 51483365--51483405 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
51483355 TTAATTTTTT
51483365 TATACTAATAAATAA
1 TATACTAATAAATAA
*
51483380 TA-AGTAATGAAATAA
1 TATACTAAT-AAATAA
51483395 TATA-TAATAAA
1 TATACTAATAAA
51483406 AGGAAGATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
14 8 0.35
15 14 0.61
16 1 0.04
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (15 bp):
TATACTAATAAATAA
Found at i:51483509 original size:39 final size:37
Alignment explanation
Indices: 51483411--51483509 Score: 94
Period size: 39 Copynumber: 2.6 Consensus size: 37
51483401 ATAAAAGGAA
* *
51483411 GATAATATAAGGAATAATATATAATAATATATGATATGT
1 GATAA-ATAAGG-ATAATATATAATAATATATAATATAT
**
51483450 GATAAA-AAATATAATAATATAATAATATGATAACTATCAT
1 GATAAATAAGGATAAT-ATATAATAATAT-ATAA-TAT-AT
51483490 -ATAAATAAGGATAATATATA
1 GATAAATAAGGATAATATATA
51483510 TATACTATTA
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
36 5 0.10
37 14 0.29
38 4 0.08
39 18 0.37
40 8 0.16
ACGTcount: A:0.56, C:0.02, G:0.09, T:0.33
Consensus pattern (37 bp):
GATAAATAAGGATAATATATAATAATATATAATATAT
Found at i:51483663 original size:13 final size:13
Alignment explanation
Indices: 51483638--51483671 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
51483628 TAAAATATAT
51483638 AATGTAT-AATAA
1 AATGTATAAATAA
*
51483650 AATTTATAAATAA
1 AATGTATAAATAA
51483663 AATGTATAA
1 AATGTATAA
51483672 TAATAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 6 0.32
13 13 0.68
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (13 bp):
AATGTATAAATAA
Found at i:51483673 original size:12 final size:12
Alignment explanation
Indices: 51483638--51483674 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
51483628 TAAAATATAT
51483638 AATGTATAATAA
1 AATGTATAATAA
*
51483650 AATTTATAAATAA
1 AATGTAT-AATAA
51483663 AATGTATAATAA
1 AATGTATAATAA
51483675 TAAAAATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.35
Consensus pattern (12 bp):
AATGTATAATAA
Found at i:51483683 original size:25 final size:24
Alignment explanation
Indices: 51483630--51483697 Score: 59
Period size: 25 Copynumber: 2.8 Consensus size: 24
51483620 ATATGTAGTA
*
51483630 AAAT-ATATAATGTATAATAAAAT
1 AAATAATAAAATGTATAATAAAAT
**
51483653 TTATAAATAAAATGTATAATAATAA-
1 AAAT-AATAAAATGTATAATAA-AAT
* *
51483678 AAATAATATAATGAATAATA
1 AAATAATAAAATGTATAATA
51483698 TTTAAATAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
23 2 0.06
24 14 0.40
25 17 0.49
26 2 0.06
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (24 bp):
AAATAATAAAATGTATAATAAAAT
Found at i:51483694 original size:12 final size:12
Alignment explanation
Indices: 51483634--51483698 Score: 51
Period size: 12 Copynumber: 5.3 Consensus size: 12
51483624 GTAGTAAAAT
51483634 ATATAATGTATA
1 ATATAATGTATA
* *
51483646 ATAAAATTTATAA
1 ATATAATGTAT-A
*
51483659 ATAAAATGTATA
1 ATATAATGTATA
**
51483671 ATAATAA-AAATA
1 AT-ATAATGTATA
*
51483683 ATATAATGAATA
1 ATATAATGTATA
51483695 ATAT
1 ATAT
51483699 TTAAATAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
11 4 0.09
12 25 0.58
13 14 0.33
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (12 bp):
ATATAATGTATA
Found at i:51486914 original size:22 final size:22
Alignment explanation
Indices: 51486886--51486938 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
51486876 TAATACCAAA
51486886 CCCCATACCCCCACTACAACAG
1 CCCCATACCCCCACTACAACAG
*
51486908 CCCCATACCTCCACTACAACAG
1 CCCCATACCCCCACTACAACAG
*
51486930 TCCCATACC
1 CCCCATACC
51486939 GTCTGACACC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.30, C:0.53, G:0.04, T:0.13
Consensus pattern (22 bp):
CCCCATACCCCCACTACAACAG
Found at i:51487249 original size:26 final size:25
Alignment explanation
Indices: 51487215--51487268 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 25
51487205 TCTTGGTTCT
*
51487215 TTTTTTATTTT-TATTTAGTTTTTTTC
1 TTTTGTATTTTCT-TTTA-TTTTTTTC
51487241 TTTTGTATTTTCTTTTATTTTTTTC
1 TTTTGTATTTTCTTTTATTTTTTTC
51487266 TTT
1 TTT
51487269 CTCTTCGCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 11 0.42
26 14 0.54
27 1 0.04
ACGTcount: A:0.09, C:0.06, G:0.04, T:0.81
Consensus pattern (25 bp):
TTTTGTATTTTCTTTTATTTTTTTC
Found at i:51487263 original size:12 final size:13
Alignment explanation
Indices: 51487211--51487268 Score: 50
Period size: 13 Copynumber: 4.5 Consensus size: 13
51487201 GTGTTCTTGG
51487211 TTCTTTT-TTTATT
1 TTCTTTTATTT-TT
51487224 TT-TATTTAGTTTTT
1 TTCT-TTTA-TTTTT
* *
51487238 TTCTTTT-GTATT
1 TTCTTTTATTTTT
51487250 TTCTTTTATTTTT
1 TTCTTTTATTTTT
51487263 TTCTTT
1 TTCTTT
51487269 CTCTTCGCGA
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
12 11 0.31
13 14 0.39
14 7 0.19
15 4 0.11
ACGTcount: A:0.09, C:0.07, G:0.03, T:0.81
Consensus pattern (13 bp):
TTCTTTTATTTTT
Found at i:51487264 original size:20 final size:19
Alignment explanation
Indices: 51487211--51487256 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
51487201 GTGTTCTTGG
51487211 TTCTTTTTTTATTTTTATT
1 TTCTTTTTTTATTTTTATT
** *
51487230 TAGTTTTTTTCTTTTGTATT
1 TTCTTTTTTTATTTT-TATT
51487250 TTCTTTT
1 TTCTTTT
51487257 ATTTTTTTCT
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.09, C:0.07, G:0.04, T:0.80
Consensus pattern (19 bp):
TTCTTTTTTTATTTTTATT
Found at i:51488204 original size:3 final size:3
Alignment explanation
Indices: 51488182--51488251 Score: 77
Period size: 3 Copynumber: 22.3 Consensus size: 3
51488172 TTTTTATTTA
* * * *
51488182 TAT TAT TGT TAG TAT CAT TAT TAT TAT TAT TAT CTCCAT TAC TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -T--AT TAT TAT TAT
51488230 TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT T
51488252 CTCTTGTTAT
Statistics
Matches: 56, Mismatches: 8, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
3 52 0.93
4 1 0.02
5 1 0.02
6 2 0.04
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:51488290 original size:20 final size:19
Alignment explanation
Indices: 51488253--51488304 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
51488243 ATTATTATTC
51488253 TCTTGTTATA-T-TACTAT
1 TCTTGTTATATTATACTAT
51488270 TCTTGTTATATTATCACTAT
1 TCTTGTTATATTAT-ACTAT
* *
51488290 TTTTCTTACTATTAT
1 TCTTGTTA-TATTAT
51488305 TATTACTACA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 10 0.34
18 1 0.03
19 1 0.03
20 11 0.38
21 6 0.21
ACGTcount: A:0.23, C:0.13, G:0.04, T:0.60
Consensus pattern (19 bp):
TCTTGTTATATTATACTAT
Found at i:51488622 original size:15 final size:15
Alignment explanation
Indices: 51488602--51488632 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
51488592 TATTATTTTC
51488602 TATTTATTACTATTA
1 TATTTATTACTATTA
51488617 TATTTATTACTATTA
1 TATTTATTACTATTA
51488632 T
1 T
51488633 TAATATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTTATTACTATTA
Found at i:51488729 original size:3 final size:3
Alignment explanation
Indices: 51488714--51488767 Score: 56
Period size: 3 Copynumber: 18.3 Consensus size: 3
51488704 CCCACTTAGC
* * * * *
51488714 TAT TAT TAC TAT TAT TAT TTT TAC TAT TAT AAT TAT TAT TAT TCT T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
51488761 TAT TAT T
1 TAT TAT T
51488768 CTCTTACATT
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
2 2 0.05
3 39 0.95
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:51489376 original size:109 final size:109
Alignment explanation
Indices: 51488972--51489369 Score: 751
Period size: 109 Copynumber: 3.7 Consensus size: 109
51488962 TTTGGAAAGT
51488972 TCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTCCTCGTTCGACCAAATGGCCAAATACCCT
1 TCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTCCTCGTTCGACCAAATGGCCAAATACCCT
51489037 TTTAAACTTTCAATAATAAAGGTAATATTTCGTATTTAGAAAAA
66 TTTAAACTTTCAATAATAAAGGTAATATTTCGTATTTAGAAAAA
51489081 TCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTCCTCGTTCGACCAAATGGCCAAATACCCT
1 TCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTCCTCGTTCGACCAAATGGCCAAATACCCT
51489146 TTTAAACTTTCAATAATAAAGGTAATATTTCGTATTTAGAAAAA
66 TTTAAACTTTCAATAATAAAGGTAATATTTCGTATTTAGAAAAA
51489190 TCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTCCTCGTTCGACCAAATGGCCAAATACCCT
1 TCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTCCTCGTTCGACCAAATGGCCAAATACCCT
51489255 TTTAAACTTTCAATAATAAAGGTAATATTTCGTATTTAGAAAAA
66 TTTAAACTTTCAATAATAAAGGTAATATTTCGTATTTAGAAAAA
* * * *
51489299 TCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTCTCGTTCGACTAAATAGCCAAATATCCT
1 TCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTCCTCGTTCGACCAAATGGCCAAATACCCT
*
51489364 CTTAAA
66 TTTAAA
51489370 TCTTCAAAGT
Statistics
Matches: 284, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
109 284 1.00
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (109 bp):
TCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTCCTCGTTCGACCAAATGGCCAAATACCCT
TTTAAACTTTCAATAATAAAGGTAATATTTCGTATTTAGAAAAA
Found at i:51493805 original size:24 final size:24
Alignment explanation
Indices: 51493772--51493825 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
51493762 ACTTCACTTA
* *
51493772 AAAAAAAAGAAGAGAAAATTAATG
1 AAAAAAAAGAAAAGAAAATGAATG
* *
51493796 AAAAAGAAGAAAAGAAAATGAGTG
1 AAAAAAAAGAAAAGAAAATGAATG
51493820 AAAAAA
1 AAAAAA
51493826 GGAGAGGCCA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.72, C:0.00, G:0.19, T:0.09
Consensus pattern (24 bp):
AAAAAAAAGAAAAGAAAATGAATG
Found at i:51495621 original size:55 final size:55
Alignment explanation
Indices: 51495559--51495893 Score: 670
Period size: 55 Copynumber: 6.1 Consensus size: 55
51495549 ATGGTTATTG
51495559 CCGACTTCACCGCAAGTGATGTTGATCATTGTTTAGATGTTTACCAGAATCATAT
1 CCGACTTCACCGCAAGTGATGTTGATCATTGTTTAGATGTTTACCAGAATCATAT
51495614 CCGACTTCACCGCAAGTGATGTTGATCATTGTTTAGATGTTTACCAGAATCATAT
1 CCGACTTCACCGCAAGTGATGTTGATCATTGTTTAGATGTTTACCAGAATCATAT
51495669 CCGACTTCACCGCAAGTGATGTTGATCATTGTTTAGATGTTTACCAGAATCATAT
1 CCGACTTCACCGCAAGTGATGTTGATCATTGTTTAGATGTTTACCAGAATCATAT
51495724 CCGACTTCACCGCAAGTGATGTTGATCATTGTTTAGATGTTTACCAGAATCATAT
1 CCGACTTCACCGCAAGTGATGTTGATCATTGTTTAGATGTTTACCAGAATCATAT
51495779 CCGACTTCACCGCAAGTGATGTTGATCATTGTTTAGATGTTTACCAGAATCATAT
1 CCGACTTCACCGCAAGTGATGTTGATCATTGTTTAGATGTTTACCAGAATCATAT
51495834 CCGACTTCACCGCAAGTGATGTTGATCATTGTTTAGATGTTTACCAGAATCATAT
1 CCGACTTCACCGCAAGTGATGTTGATCATTGTTTAGATGTTTACCAGAATCATAT
51495889 CCGAC
1 CCGAC
51495894 ATGGCAATTT
Statistics
Matches: 280, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 280 1.00
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (55 bp):
CCGACTTCACCGCAAGTGATGTTGATCATTGTTTAGATGTTTACCAGAATCATAT
Found at i:51497267 original size:43 final size:43
Alignment explanation
Indices: 51497220--51497306 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
51497210 AAGAAAGATA
51497220 CAAAGTTTGCGTTAAATAATATAATTAGAACCAAAATACCCAT
1 CAAAGTTTGCGTTAAATAATATAATTAGAACCAAAATACCCAT
51497263 CAAAGTTTGCGTTAAATAATATAATTAGAACCAAAATACCCAT
1 CAAAGTTTGCGTTAAATAATATAATTAGAACCAAAATACCCAT
51497306 C
1 C
51497307 CAACCTTAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.46, C:0.17, G:0.09, T:0.28
Consensus pattern (43 bp):
CAAAGTTTGCGTTAAATAATATAATTAGAACCAAAATACCCAT
Found at i:51497316 original size:38 final size:39
Alignment explanation
Indices: 51497231--51497316 Score: 111
Period size: 43 Copynumber: 2.1 Consensus size: 39
51497221 AAAGTTTGCG
*
51497231 TTAAATAATATAATTAGAACCAAAATACCCATCAAAGTTTGCG
1 TTAAATAATATAATTAGAACCAAAATACCCATCAAA---T-CC
*
51497274 TTAAATAATATAATTAGAACCAAAATACCCATCCAA-CC
1 TTAAATAATATAATTAGAACCAAAATACCCATCAAATCC
51497312 TTAAA
1 TTAAA
51497317 GGTTGGCTTA
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
38 6 0.15
43 35 0.85
ACGTcount: A:0.49, C:0.19, G:0.06, T:0.27
Consensus pattern (39 bp):
TTAAATAATATAATTAGAACCAAAATACCCATCAAATCC
Found at i:51500312 original size:134 final size:134
Alignment explanation
Indices: 51500072--51500615 Score: 1029
Period size: 134 Copynumber: 4.1 Consensus size: 134
51500062 GTAGAGCTGG
*
51500072 TTGAAGATAT-CAGATATTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTT
1 TTGAAGAT-TGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTT
51500136 ACCTCCCTGACTACAGTGGAGTACGTTGAAGCCGATAACTCTATCTCCCTGTATTGGGCAGTGGA
65 ACCTCCCTGACTACAGTGGAGTACGTTGAAGCCGATAACTCTATCTCCCTGTATTGGGCAGTGGA
51500201 ATAGA
130 ATAGA
51500206 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTA
1 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTA
51500271 CCTCCCTGACTACAGTGGAGTACGTTGAAGCCGATAACTCTATCTCCCTGTATTGGGCAGTGGAA
66 CCTCCCTGACTACAGTGGAGTACGTTGAAGCCGATAACTCTATCTCCCTGTATTGGGCAGTGGAA
51500336 TAGA
131 TAGA
51500340 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTA
1 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTA
51500405 CCTCCCTGACTACAGTGGAGTACGTTGAAGCCGATAACTCTATCTCCCTGTATTGGGCAGTGGAA
66 CCTCCCTGACTACAGTGGAGTACGTTGAAGCCGATAACTCTATCTCCCTGTATTGGGCAGTGGAA
51500470 TAGA
131 TAGA
51500474 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTA
1 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTA
* *
51500539 CCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATCT-GGCAGTGGA
66 CCTCCCTGACTACAGTGGAGTACGTTGAAGCCGATAACTCTATCTCCCTGTAT-TGGGCAGTGGA
51500603 ATAGA
130 ATAGA
51500608 TTGAAGAT
1 TTGAAGAT
51500616 CAAATATGAC
Statistics
Matches: 405, Mismatches: 3, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
133 1 0.00
134 403 1.00
135 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (134 bp):
TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTA
CCTCCCTGACTACAGTGGAGTACGTTGAAGCCGATAACTCTATCTCCCTGTATTGGGCAGTGGAA
TAGA
Found at i:51500602 original size:45 final size:44
Alignment explanation
Indices: 51500551--51500708 Score: 131
Period size: 45 Copynumber: 3.4 Consensus size: 44
51500541 TCCCTGACTA
*
51500551 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATCTGG
1 CAGTGGAATACATTGAAGCCGATAACTCTATCTCCCTG-ATCTGG
* ** * * *
51500596 CAGTGGAATAGATTGAAGATCAAATATGACAGATTTTACCTCCCTGA-CT-A
1 CAGTGGAATACATTGAAG--CCGATA--AC----TCTATCTCCCTGATCTGG
*
51500646 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGG
1 CAGTGGAATACATTGAAGCCGATAACTCTATCTCCCTG-ATCTGG
*
51500691 CAGTGGAATAGATTGAAG
1 CAGTGGAATACATTGAAG
51500709 ATTGCAGATC
Statistics
Matches: 86, Mismatches: 16, Indels: 22
0.69 0.13 0.18
Matches are distributed among these distances:
42 10 0.12
43 1 0.01
44 2 0.02
45 32 0.37
46 2 0.02
47 4 0.05
48 4 0.05
49 2 0.02
50 16 0.19
51 2 0.02
52 1 0.01
53 10 0.12
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (44 bp):
CAGTGGAATACATTGAAGCCGATAACTCTATCTCCCTGATCTGG
Found at i:51500633 original size:95 final size:95
Alignment explanation
Indices: 51500530--51500710 Score: 353
Period size: 95 Copynumber: 1.9 Consensus size: 95
51500520 TCGAAGATGG
51500530 CAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATCTG
1 CAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATCTG
51500595 GCAGTGGAATAGATTGAAGATCAAATATGA
66 GCAGTGGAATAGATTGAAGATCAAATATGA
*
51500625 CAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTG
1 CAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATCTG
51500690 GCAGTGGAATAGATTGAAGAT
66 GCAGTGGAATAGATTGAAGAT
51500711 TGCAGATCTT
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
95 85 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.28
Consensus pattern (95 bp):
CAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATCTG
GCAGTGGAATAGATTGAAGATCAAATATGA
Found at i:51500798 original size:229 final size:229
Alignment explanation
Indices: 51500396--51500844 Score: 839
Period size: 229 Copynumber: 2.0 Consensus size: 229
51500386 TCGAAGATGG
*
51500396 CAGATTTTACCTCCCTGACTACAGTGGAGTACGTTGAAGCCGATAACTCTATCTCCCTGTATTGG
1 CAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTGG
51500461 GCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAG
66 GCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAG
51500526 ATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCA
131 ATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCA
51500591 TCT-GGCAGTGGAATAGATTGAAGATCAAATATGA
196 T-TGGGCAGTGGAATAGATTGAAGATCAAATATGA
51500625 CAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCT-
1 CAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTAT-TG
51500689 GGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAA
65 GGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAA
* *
51500754 GATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACGTTGAAGCCGATAACTCTATCTCCCTGT
130 GATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGC
51500819 ATTGGGCAGTGGAATAGATTGAAGAT
195 ATTGGGCAGTGGAATAGATTGAAGAT
51500845 TGCAGATCTT
Statistics
Matches: 215, Mismatches: 3, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
228 1 0.00
229 213 0.99
230 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28
Consensus pattern (229 bp):
CAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTGG
GCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAG
ATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCA
TTGGGCAGTGGAATAGATTGAAGATCAAATATGA
Found at i:51500852 original size:134 final size:134
Alignment explanation
Indices: 51500625--51501274 Score: 1169
Period size: 134 Copynumber: 4.8 Consensus size: 134
51500615 TCAAATATGA
51500625 CAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTG
1 CAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTG
*
51500690 GCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAG
66 GCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAG
51500755 ATGG
131 ATGG
*
51500759 CAGATTTTACCTCCCTGACTACAGTGGAGTACGTTGAAGCCGATAACTCTATCTCCCTGTAT-TG
1 CAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCT-
*
51500823 GGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAA
65 GGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAA
51500888 GATGG
130 GATGG
*
51500893 CAGATTTTACCTCCCTGACTACAGTGGAGTACGTTGAAGCCGATAACTCTATCTCCCTGTAT-TG
1 CAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCT-
51500957 GGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAA
65 GGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAA
51501022 GATGG
130 GATGG
*
51501027 CAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCACTGTATCTG
1 CAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTG
*
51501092 GCAGTAGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAG
66 GCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAG
51501157 ATGG
131 ATGG
* *
51501161 CAGATTTTACCTCTCTGTGACTACAGTGGAGTACATTGAAACCGATAACTCTATCTCCCTGTATC
1 CAGATTTTACCTC-C-CTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATC
*
51501226 TGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCTTGTATTAGG
64 TGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGG
51501275 TAAGAAGTAG
Statistics
Matches: 502, Mismatches: 10, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
133 1 0.00
134 406 0.81
135 2 0.00
136 93 0.19
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (134 bp):
CAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTG
GCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAG
ATGG
Found at i:51500932 original size:363 final size:363
Alignment explanation
Indices: 51500262--51500978 Score: 1375
Period size: 363 Copynumber: 2.0 Consensus size: 363
51500252 TCGAAGATGG
*
51500262 CAGATTTTACCTCCCTGACTACAGTGGAGTACGTTGAAGCCGATAACTCTATCTCCCTGTATTGG
1 CAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTGG
51500327 GCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAG
66 GCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAG
51500392 ATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACGTTGAAGCCGATAACTCTATCTCCCTGTA
131 ATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACGTTGAAGCCGATAACTCTATCTCCCTGTA
51500457 TTGGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATC
196 TTGGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATC
51500522 GAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCC
261 GAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCC
51500587 TGCATCT-GGCAGTGGAATAGATTGAAGATCAAATATGA
326 TGCAT-TGGGCAGTGGAATAGATTGAAGATCAAATATGA
51500625 CAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCT-
1 CAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTAT-TG
51500689 GGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAA
65 GGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAA
51500754 GATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACGTTGAAGCCGATAACTCTATCTCCCTGT
130 GATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACGTTGAAGCCGATAACTCTATCTCCCTGT
51500819 ATTGGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGAT
195 ATTGGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGAT
*
51500884 CGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACGTTGAAGCCGATAACTCTATCTCC
260 CGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCC
*
51500949 CTGTATTGGGCAGTGGAATAGATTGAAGAT
325 CTGCATTGGGCAGTGGAATAGATTGAAGAT
51500979 TGCAGATCTT
Statistics
Matches: 349, Mismatches: 3, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
362 1 0.00
363 347 0.99
364 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.28
Consensus pattern (363 bp):
CAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTGG
GCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAG
ATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACGTTGAAGCCGATAACTCTATCTCCCTGTA
TTGGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATC
GAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCC
TGCATTGGGCAGTGGAATAGATTGAAGATCAAATATGA
Found at i:51501062 original size:497 final size:497
Alignment explanation
Indices: 51500128--51501112 Score: 1909
Period size: 497 Copynumber: 2.0 Consensus size: 497
51500118 TCGAAGATGG
*
51500128 CAGATTTTACCTCCCTGACTACAGTGGAGTACGTTGAAGCCGATAACTCTATCTCCCTGTATTGG
1 CAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTGG
51500193 GCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAG
66 GCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAG
51500258 ATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACGTTGAAGCCGATAACTCTATCTCCCTGTA
131 ATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACGTTGAAGCCGATAACTCTATCTCCCTGTA
51500323 TTGGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATC
196 TTGGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATC
51500388 GAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACGTTGAAGCCGATAACTCTATCTCCC
261 GAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACGTTGAAGCCGATAACTCTATCTCCC
*
51500453 TGTATTGGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
326 TGTATTGGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCA
51500518 GATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATC
391 GATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATC
* *
51500583 TCCCTGCATCTGGCAGTGGAATAGATTGAAGATCAAATATGA
456 TCACTGCATCTGGCAGTAGAATAGATTGAAGATCAAATATGA
51500625 CAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCT-
1 CAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTAT-TG
51500689 GGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAA
65 GGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAA
51500754 GATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACGTTGAAGCCGATAACTCTATCTCCCTGT
130 GATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACGTTGAAGCCGATAACTCTATCTCCCTGT
51500819 ATTGGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGAT
195 ATTGGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGAT
51500884 CGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACGTTGAAGCCGATAACTCTATCTCC
260 CGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACGTTGAAGCCGATAACTCTATCTCC
51500949 CTGTATTGGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGC
325 CTGTATTGGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGC
51501014 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
390 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
51501079 CTCACTGTATCTGGCAGTAGAATAGATTGAAGAT
455 CTCACTGCATCTGGCAGTAGAATAGATTGAAGAT
51501113 TGCAGATCTT
Statistics
Matches: 482, Mismatches: 5, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
497 481 1.00
498 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.28
Consensus pattern (497 bp):
CAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTGG
GCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAG
ATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACGTTGAAGCCGATAACTCTATCTCCCTGTA
TTGGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATC
GAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACGTTGAAGCCGATAACTCTATCTCCC
TGTATTGGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCA
GATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATC
TCACTGCATCTGGCAGTAGAATAGATTGAAGATCAAATATGA
Found at i:51501491 original size:44 final size:44
Alignment explanation
Indices: 51501237--51501495 Score: 198
Period size: 44 Copynumber: 5.9 Consensus size: 44
51501227 GGCAGTGGAA
* * * * * **
51501237 TAGATTGAAGATTGCAGATCTTGCCTTCTTGTATTAGGTAAGAAG
1 TAGATCGAAGATAGCAGATCTTGTCTTCCTATATT-GGTGTGAAG
* * * *
51501282 TAGACCGAAGAAAGCAGATCTTGTCTTCATGTATTGGTGTGAAG
1 TAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTGTGAAG
* * * **
51501326 TAGATCAAAGATAACAGGTCCGGTCTTCCTATATTGGTAG-GAAG
1 TAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGT-GTGAAG
* * * * * * *
51501370 TGGATCGACGA-CGCAGATCTTGTCTTCCCATACTGGTGCCGAAT
1 TAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTG-TGAAG
* * * * * *
51501414 TAGATCGAAGAAAGCAGATCTTATTTTCATATATTGATGTGAAA
1 TAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTGTGAAG
* *
51501458 TAGATCGAAGATAGCAGATCCTGCCTTCCTATATTGGT
1 TAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGT
51501496 AGGAAGTGGA
Statistics
Matches: 164, Mismatches: 46, Indels: 9
0.75 0.21 0.04
Matches are distributed among these distances:
42 1 0.01
43 19 0.12
44 94 0.57
45 50 0.30
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (44 bp):
TAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTGTGAAG
Found at i:51501550 original size:132 final size:131
Alignment explanation
Indices: 51501282--51501525 Score: 312
Period size: 132 Copynumber: 1.9 Consensus size: 131
51501272 AGGTAAGAAG
* * * * * *
51501282 TAGACCGAAGAAAGCAGATCTTGTCTTCATGTATTGGTGTGAAGTAGATCAAAGATAACAGGTCC
1 TAGATCGAAGAAAGCAGATCTTATCTTCATATATTGATGTGAAATAGATCAAAGATAACAGATCC
* * ** *
51501347 GGTCTTCCTATATTGGTAGGAAGTGGATCGACGACGCAGATCTTGTCTTCCCATACTGGTGCCGA
66 GGCCTTCCTATATTGGTAGGAAGTGGATCGACAAAACAGATCTTATCTTCCCATACTGGTG-CGA
51501412 AT
130 AT
* * *
51501414 TAGATCGAAGAAAGCAGATCTTATTTTCATATATTGATGTGAAATAGATCGAAGATAGCAGATCC
1 TAGATCGAAGAAAGCAGATCTTATCTTCATATATTGATGTGAAATAGATCAAAGATAACAGATCC
* *
51501479 TGCCTTCCTATATTGGTAGGAAGTGGATTGA-AAAACAGA-CTCTATCT
66 GGCCTTCCTATATTGGTAGGAAGTGGATCGACAAAACAGATCT-TATCT
51501526 CCCTGTATTT
Statistics
Matches: 95, Mismatches: 16, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
130 2 0.02
131 9 0.09
132 84 0.88
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (131 bp):
TAGATCGAAGAAAGCAGATCTTATCTTCATATATTGATGTGAAATAGATCAAAGATAACAGATCC
GGCCTTCCTATATTGGTAGGAAGTGGATCGACAAAACAGATCTTATCTTCCCATACTGGTGCGAA
T
Found at i:51501866 original size:229 final size:229
Alignment explanation
Indices: 51501454--51501891 Score: 734
Period size: 229 Copynumber: 1.9 Consensus size: 229
51501444 ATATTGATGT
*
51501454 GAAATAGATCGAAGATAGCAGATCCTGCCTTCCTATATTGGTAGGAAGTGGATTGAAAAACAGAC
1 GAAATAGATCGAAGATAGCAGATCCTGCCTCCCTATATTGGTAGGAAGTGGATTGAAAAACAGAC
* * *
51501519 TCTATCTCCCTGTATTTAGCAGTGGAATAGATTACAGGTCGAAGACGGCAGACTTTACCTCCCTG
66 TCTATCTCCCTGTATTTAGCAGTGGAACAGATTACAGATCAAAGACGGCAGACTTTACCTCCCTG
* * *
51501584 ACTACAGTGGAGTACGTTGAAGCCGATAACTCTATCTCCCTGTATTGGGCAGTGGAATAGATTGA
131 ACTACAATGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTGGGCAGTGGAATAGATTGA
51501649 AGATTGCAGATCTTGCCTTCCTGTATTCGGCAAC
196 AGATTGCAGATCTTGCCTTCCTGTATTCGGCAAC
51501683 GAAATAGATCGAAGATAGCAGATCCTGCCTCCCTATATTGGTAGGAAGTGGATTGAAAAACAGAC
1 GAAATAGATCGAAGATAGCAGATCCTGCCTCCCTATATTGGTAGGAAGTGGATTGAAAAACAGAC
* * *
51501748 TCTATCTCCCTGTATTTGGCAGTGGAACAGATTGA-AGATCAAAGATGGCAGATTTTACCTCCCT
66 TCTATCTCCCTGTATTTAGCAGTGGAACAGATT-ACAGATCAAAGACGGCAGACTTTACCTCCCT
* *
51501812 GACTACAATGGAGTACATTGAAGCCGATGACTCTATCTCCCTGCATTTGGCAGTGGAATAGATTG
130 GACTACAATGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTGGGCAGTGGAATAGATTG
* *
51501877 AAGATTTCAGGTCTT
195 AAGATTGCAGATCTT
51501892 ATCTCCCTAA
Statistics
Matches: 194, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
229 193 0.99
230 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (229 bp):
GAAATAGATCGAAGATAGCAGATCCTGCCTCCCTATATTGGTAGGAAGTGGATTGAAAAACAGAC
TCTATCTCCCTGTATTTAGCAGTGGAACAGATTACAGATCAAAGACGGCAGACTTTACCTCCCTG
ACTACAATGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTGGGCAGTGGAATAGATTGA
AGATTGCAGATCTTGCCTTCCTGTATTCGGCAAC
Found at i:51502253 original size:22 final size:22
Alignment explanation
Indices: 51502225--51502277 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
51502215 TAATACCAAA
51502225 CCCCATACCCCCACTACAACAG
1 CCCCATACCCCCACTACAACAG
*
51502247 CCCCATACCTCCACTACAACAG
1 CCCCATACCCCCACTACAACAG
*
51502269 TCCCATACC
1 CCCCATACC
51502278 GTCTGACACC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.30, C:0.53, G:0.04, T:0.13
Consensus pattern (22 bp):
CCCCATACCCCCACTACAACAG
Found at i:51502588 original size:26 final size:25
Alignment explanation
Indices: 51502554--51502607 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 25
51502544 TCTTGGTTCT
*
51502554 TTTTTTATTTT-TATTTAGTTTTTTTC
1 TTTTGTATTTTCT-TTTA-TTTTTTTC
51502580 TTTTGTATTTTCTTTTATTTTTTTC
1 TTTTGTATTTTCTTTTATTTTTTTC
51502605 TTT
1 TTT
51502608 CTCTTCGCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 11 0.42
26 14 0.54
27 1 0.04
ACGTcount: A:0.09, C:0.06, G:0.04, T:0.81
Consensus pattern (25 bp):
TTTTGTATTTTCTTTTATTTTTTTC
Found at i:51502602 original size:12 final size:13
Alignment explanation
Indices: 51502550--51502607 Score: 50
Period size: 13 Copynumber: 4.5 Consensus size: 13
51502540 GTGTTCTTGG
51502550 TTCTTTT-TTTATT
1 TTCTTTTATTT-TT
51502563 TT-TATTTAGTTTTT
1 TTCT-TTTA-TTTTT
* *
51502577 TTCTTTT-GTATT
1 TTCTTTTATTTTT
51502589 TTCTTTTATTTTT
1 TTCTTTTATTTTT
51502602 TTCTTT
1 TTCTTT
51502608 CTCTTCGCGA
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
12 11 0.31
13 14 0.39
14 7 0.19
15 4 0.11
ACGTcount: A:0.09, C:0.07, G:0.03, T:0.81
Consensus pattern (13 bp):
TTCTTTTATTTTT
Found at i:51502603 original size:20 final size:19
Alignment explanation
Indices: 51502550--51502595 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
51502540 GTGTTCTTGG
51502550 TTCTTTTTTTATTTTTATT
1 TTCTTTTTTTATTTTTATT
** *
51502569 TAGTTTTTTTCTTTTGTATT
1 TTCTTTTTTTATTTT-TATT
51502589 TTCTTTT
1 TTCTTTT
51502596 ATTTTTTTCT
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.09, C:0.07, G:0.04, T:0.80
Consensus pattern (19 bp):
TTCTTTTTTTATTTTTATT
Found at i:51504768 original size:55 final size:55
Alignment explanation
Indices: 51504706--51504820 Score: 230
Period size: 55 Copynumber: 2.1 Consensus size: 55
51504696 ATGGTTATTG
51504706 CCGACTTCACCGCAAGTGATGTTGATCATTGTTTAGATGTTTACCAGAATCATAT
1 CCGACTTCACCGCAAGTGATGTTGATCATTGTTTAGATGTTTACCAGAATCATAT
51504761 CCGACTTCACCGCAAGTGATGTTGATCATTGTTTAGATGTTTACCAGAATCATAT
1 CCGACTTCACCGCAAGTGATGTTGATCATTGTTTAGATGTTTACCAGAATCATAT
51504816 CCGAC
1 CCGAC
51504821 ATGGCAATTT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 60 1.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (55 bp):
CCGACTTCACCGCAAGTGATGTTGATCATTGTTTAGATGTTTACCAGAATCATAT
Found at i:51506194 original size:43 final size:43
Alignment explanation
Indices: 51506147--51506233 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
51506137 AAGAAAGATA
51506147 CAAAGTTTGCGTTAAATAATATAATTAGAACCAAAATACCCAT
1 CAAAGTTTGCGTTAAATAATATAATTAGAACCAAAATACCCAT
51506190 CAAAGTTTGCGTTAAATAATATAATTAGAACCAAAATACCCAT
1 CAAAGTTTGCGTTAAATAATATAATTAGAACCAAAATACCCAT
51506233 C
1 C
51506234 CAACCTTAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.46, C:0.17, G:0.09, T:0.28
Consensus pattern (43 bp):
CAAAGTTTGCGTTAAATAATATAATTAGAACCAAAATACCCAT
Found at i:51506243 original size:38 final size:39
Alignment explanation
Indices: 51506158--51506243 Score: 111
Period size: 43 Copynumber: 2.1 Consensus size: 39
51506148 AAAGTTTGCG
*
51506158 TTAAATAATATAATTAGAACCAAAATACCCATCAAAGTTTGCG
1 TTAAATAATATAATTAGAACCAAAATACCCATCAAA---T-CC
*
51506201 TTAAATAATATAATTAGAACCAAAATACCCATCCAA-CC
1 TTAAATAATATAATTAGAACCAAAATACCCATCAAATCC
51506239 TTAAA
1 TTAAA
51506244 GGTTGGCTTA
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
38 6 0.15
43 35 0.85
ACGTcount: A:0.49, C:0.19, G:0.06, T:0.27
Consensus pattern (39 bp):
TTAAATAATATAATTAGAACCAAAATACCCATCAAATCC
Found at i:51507154 original size:37 final size:37
Alignment explanation
Indices: 51507095--51507166 Score: 110
Period size: 37 Copynumber: 1.9 Consensus size: 37
51507085 TTCTCAACAA
*
51507095 ATATTCAGAAGTAGCTTCCTTTGAGTATCAATTTCTC
1 ATATTCAGAAGTAACTTCCTTTGAGTATCAATTTCTC
*
51507132 ATATTCAGAAGTAAC-TCACTTTGAGTATTAATTTC
1 ATATTCAGAAGTAACTTC-CTTTGAGTATCAATTTC
51507167 CCATTCATCA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
36 2 0.06
37 30 0.94
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.40
Consensus pattern (37 bp):
ATATTCAGAAGTAACTTCCTTTGAGTATCAATTTCTC
Found at i:51507677 original size:11 final size:12
Alignment explanation
Indices: 51507651--51507675 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
51507641 ATTGATGTAA
51507651 TTAAAAAATATT
1 TTAAAAAATATT
51507663 TTAAAAAATATT
1 TTAAAAAATATT
51507675 T
1 T
51507676 AACTAATTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
TTAAAAAATATT
Found at i:51509246 original size:25 final size:25
Alignment explanation
Indices: 51509212--51509263 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
51509202 CAGGTTCGAG
51509212 AGTCAGTTACGTACGAGGAAGGGTT
1 AGTCAGTTACGTACGAGGAAGGGTT
51509237 AGTCAGTTACGTACGAGGAAGGGTT
1 AGTCAGTTACGTACGAGGAAGGGTT
51509262 AG
1 AG
51509264 CACCCTCGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.29, C:0.12, G:0.37, T:0.23
Consensus pattern (25 bp):
AGTCAGTTACGTACGAGGAAGGGTT
Found at i:51510071 original size:16 final size:16
Alignment explanation
Indices: 51510043--51510080 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
51510033 ATAAGGAAAT
*
51510043 TATAAA-CATATAAAA
1 TATAAATCAAATAAAA
51510058 TATAAATCAAATAAAA
1 TATAAATCAAATAAAA
*
51510074 TAAAAAT
1 TATAAAT
51510081 AAAGATATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.26
Consensus pattern (16 bp):
TATAAATCAAATAAAA
Found at i:51510367 original size:21 final size:20
Alignment explanation
Indices: 51510342--51510410 Score: 61
Period size: 19 Copynumber: 3.3 Consensus size: 20
51510332 TAATAAAATT
51510342 TATAAACAAAATATATAATGA
1 TATAAACAAAATATATAAT-A
*
51510363 TATAAACAATATGATAGATAATA
1 TATAAACAA-A--ATATATAATA
*
51510386 TATAAA-ATAATATAT-ATA
1 TATAAACAAAATATATAATA
51510404 TAATAAA
1 T-ATAAA
51510411 ATGTATGTAA
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
18 4 0.10
19 10 0.24
21 10 0.24
22 2 0.05
23 7 0.17
24 8 0.20
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.32
Consensus pattern (20 bp):
TATAAACAAAATATATAATA
Found at i:51510441 original size:10 final size:10
Alignment explanation
Indices: 51510351--51510461 Score: 69
Period size: 10 Copynumber: 11.6 Consensus size: 10
51510341 TTATAAACAA
51510351 AATATATAAT
1 AATATATAAT
* *
51510361 GATATA-AAC
1 AATATATAAT
51510370 AATATGATAGAT
1 AATAT-ATA-AT
51510382 AATATATAA-
1 AATATATAAT
51510391 AATA-AT-AT
1 AATATATAAT
51510399 -ATATATAAT
1 AATATATAAT
* *
51510408 AAAATGT-AT
1 AATATATAAT
*
51510417 -GTA-AT-AT
1 AATATATAAT
51510424 AATATATAAT
1 AATATATAAT
*
51510434 AATGTATAAT
1 AATATATAAT
51510444 AATATAATAAAT
1 AATAT-AT-AAT
51510456 AATATA
1 AATATA
51510462 CAGATATAAA
Statistics
Matches: 77, Mismatches: 12, Indels: 23
0.69 0.11 0.21
Matches are distributed among these distances:
7 7 0.09
8 7 0.09
9 16 0.21
10 26 0.34
11 7 0.09
12 14 0.18
ACGTcount: A:0.58, C:0.01, G:0.05, T:0.36
Consensus pattern (10 bp):
AATATATAAT
Found at i:51510456 original size:12 final size:12
Alignment explanation
Indices: 51510351--51510461 Score: 50
Period size: 12 Copynumber: 9.1 Consensus size: 12
51510341 TTATAAACAA
*
51510351 AATATATAATGAT
1 AATAAATAAT-AT
*
51510364 -ATAAACAATAT
1 AATAAATAATAT
* *
51510375 GATAGATAATAT
1 AATAAATAATAT
51510387 -ATAAAATAATAT
1 AAT-AAATAATAT
*
51510399 ATATATAATAAAAT
1 A-ATA-AATAATAT
* **
51510413 -GTATGTAATAT
1 AATAAATAATAT
*
51510424 AATATATAATA-
1 AATAAATAATAT
*
51510435 ATGTATAATAATAT
1 A-ATA-AATAATAT
51510449 AATAAATAATAT
1 AATAAATAATAT
51510461 A
1 A
51510462 CAGATATAAA
Statistics
Matches: 74, Mismatches: 15, Indels: 19
0.69 0.14 0.18
Matches are distributed among these distances:
11 10 0.14
12 45 0.61
13 9 0.12
14 10 0.14
ACGTcount: A:0.58, C:0.01, G:0.05, T:0.36
Consensus pattern (12 bp):
AATAAATAATAT
Found at i:51511092 original size:17 final size:17
Alignment explanation
Indices: 51511070--51511127 Score: 107
Period size: 17 Copynumber: 3.4 Consensus size: 17
51511060 CACTAGGCTA
51511070 CACGCGCACATGCGCTG
1 CACGCGCACATGCGCTG
51511087 CACGCGCACATGCGCTG
1 CACGCGCACATGCGCTG
*
51511104 CACGCGCACATGCGCCG
1 CACGCGCACATGCGCTG
51511121 CACGCGC
1 CACGCGC
51511128 TGTCGTACAG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
17 40 1.00
ACGTcount: A:0.17, C:0.45, G:0.29, T:0.09
Consensus pattern (17 bp):
CACGCGCACATGCGCTG
Found at i:51515211 original size:20 final size:20
Alignment explanation
Indices: 51515187--51515269 Score: 96
Period size: 20 Copynumber: 4.2 Consensus size: 20
51515177 ACAAGCACAA
*
51515187 TGAGCTGAATTGAGCTCGTG
1 TGAGCTGAATTGAGCTCGAG
* *
51515207 GGAGCT-AACTTGAGCTCGAA
1 TGAGCTGAA-TTGAGCTCGAG
* * *
51515227 TGAGTTGACTTGAGGTCGAG
1 TGAGCTGAATTGAGCTCGAG
51515247 TGAGCTGAATTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
51515267 TGA
1 TGA
51515270 CTTGAACCTC
Statistics
Matches: 50, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
19 2 0.04
20 47 0.94
21 1 0.02
ACGTcount: A:0.24, C:0.14, G:0.35, T:0.27
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:51516734 original size:13 final size:13
Alignment explanation
Indices: 51516716--51516748 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
51516706 CAAAATAAAC
*
51516716 TTTTTTTTTGAAT
1 TTTTTTTTTCAAT
51516729 TTTTTTTTTCAAT
1 TTTTTTTTTCAAT
51516742 TTTTTTT
1 TTTTTTT
51516749 CACAATGACT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.12, C:0.03, G:0.03, T:0.82
Consensus pattern (13 bp):
TTTTTTTTTCAAT
Found at i:51523110 original size:28 final size:28
Alignment explanation
Indices: 51523012--51523110 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
51523002 CATGAGATTT
* * **
51523012 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
51523041 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
51523069 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
51523097 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
51523111 GACTTACTAT
Statistics
Matches: 63, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
28 46 0.73
29 17 0.27
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:51525236 original size:44 final size:44
Alignment explanation
Indices: 51525146--51526001 Score: 1016
Period size: 44 Copynumber: 19.4 Consensus size: 44
51525136 CACCCTGCCT
* * * *
51525146 AATACAGAGACGCCAAAT-TCGCTACCCTCGATCTACTCTCTGAC
1 AATACAGAGACGCCAAATCT-ACTATCTTCGATCTGCTCTCTGAC
* ** * * * *
51525190 AATATAGAGGTGCTAAATCTACCATCTTCGACCTGCTCTCTAAC
1 AATACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGAC
* * *
51525234 AATACAGAGATGCCAAATCTGCTATCTTCGATTTGCTCTCTGAC
1 AATACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGAC
* * *
51525278 AATATAGAGACGCC-AATCCTACTATCTTCGATCTGCTCTTTTAC
1 AATACAGAGACGCCAAAT-CTACTATCTTCGATCTGCTCTCTGAC
* *
51525322 AATACAGAGACGCCAAATCTACTCTCTTTGATCTGCTCTCTGAC
1 AATACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGAC
* * * * * * *
51525366 AATACAGTGACACAAAATCTACTATTTTTGATCTACTCTCTAAC
1 AATACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGAC
*
51525410 AATACAGAGACGCCAAATCTACTATCTTTGATCTGCTCTCTGAC
1 AATACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGAC
* * *
51525454 AATACAGGGACGCCAAATCTACTACCTTTGATCTGCTCTCTGAC
1 AATACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGAC
* * *
51525498 AATACAGGGACGCCAAATCTACTACCTTTGATCTGCTCTCTGAC
1 AATACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGAC
* ** *
51525542 AATACAGGGACGCCAAATCTGTTATCTTCGATCTGCTCTCTAAC
1 AATACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGAC
* * *
51525586 AATACAGAAACGCCAAATCTGCTAATCTTCGATCTGCTCTCTAAC
1 AATACAGAGACGCCAAATCTACT-ATCTTCGATCTGCTCTCTGAC
* *
51525631 AATACAGAGAAGCCAAATCTACTATCTTCGATATGCTCTCTGAC
1 AATACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGAC
* *
51525675 AATACAGTGACGCCAAATCTACTATCTTTGATCTGCTCTCTGAC
1 AATACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGAC
* * * * * * *
51525719 AATACA-AGGACGCTAAATCTGCTATCTACTATATGCTATTTGAC
1 AATACAGA-GACGCCAAATCTACTATCTTCGATCTGCTCTCTGAC
* * *
51525763 AATACAGAGATGCCAAATCTGCTATCTTCGATCTACTCTCTGAC
1 AATACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGAC
* * * * * *
51525807 AATACAGAGACGCCAAATCTGCTATCTACTATCTGCTATTTGAA
1 AATACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGAC
* * *
51525851 AATACAGAGATGCCAAATCTGCTATCTTCGATCTACTCTCTGAC
1 AATACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGAC
** *
51525895 AATACAGAGACGCCAAATCTGTTATCTTTGATCTGCTCTCTGAC
1 AATACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGAC
* * * *
51525939 AATACAAAGACGCCAAATCTGCCATCTTTGATCTGCTCTCTGAC
1 AATACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGAC
*
51525983 AATACAGAGACGCTAAATC
1 AATACAGAGACGCCAAATC
51526002 GGCTATCGGT
Statistics
Matches: 704, Mismatches: 102, Indels: 12
0.86 0.12 0.01
Matches are distributed among these distances:
43 3 0.00
44 655 0.93
45 46 0.07
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (44 bp):
AATACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGAC
Found at i:51536562 original size:15 final size:16
Alignment explanation
Indices: 51536544--51536576 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
51536534 ATAAGCAAAT
*
51536544 TATAAA-CATATAAAA
1 TATAAATCAAATAAAA
51536559 TATAAATCAAATAAAA
1 TATAAATCAAATAAAA
51536575 TA
1 TA
51536577 AAAAAAAAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (16 bp):
TATAAATCAAATAAAA
Found at i:51536869 original size:21 final size:20
Alignment explanation
Indices: 51536845--51536910 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 20
51536835 TAATAAAATT
51536845 TATAAACAAAATATATAATGA
1 TATAAACAAAATATATAAT-A
*
51536866 TATAAACAATATGATAGATAATA
1 TATAAACAA-A--ATATATAATA
*
51536889 TATAAA-ATAATATAT-ATA
1 TATAAACAAAATATATAATA
51536907 TATA
1 TATA
51536911 GTAAAATGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
18 7 0.18
19 5 0.13
21 10 0.26
22 2 0.05
23 7 0.18
24 8 0.21
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.33
Consensus pattern (20 bp):
TATAAACAAAATATATAATA
Found at i:51536946 original size:10 final size:10
Alignment explanation
Indices: 51536854--51536966 Score: 63
Period size: 10 Copynumber: 10.6 Consensus size: 10
51536844 TTATAAACAA
51536854 AATATATAAT
1 AATATATAAT
* *
51536864 GATATA-AAC
1 AATATATAAT
51536873 AATATGATAGAT
1 AATAT-ATA-AT
51536885 AATATATAA-
1 AATATATAAT
51536894 AATA-ATATAT
1 AATATATA-AT
51536904 ATATATAGTAA-
1 A-ATATA-TAAT
*
51536915 AATGTATGTAATAT
1 AA--TATAT-A-AT
51536929 AATATATAAT
1 AATATATAAT
*
51536939 AATGTATAAT
1 AATATATAAT
51536949 AATATAATAAAT
1 AATAT-AT-AAT
51536961 AATATA
1 AATATA
51536967 CAAATATAAA
Statistics
Matches: 80, Mismatches: 8, Indels: 29
0.68 0.07 0.25
Matches are distributed among these distances:
8 3 0.04
9 11 0.14
10 24 0.30
11 13 0.16
12 24 0.30
13 3 0.04
14 2 0.03
ACGTcount: A:0.57, C:0.01, G:0.06, T:0.36
Consensus pattern (10 bp):
AATATATAAT
Found at i:51536951 original size:25 final size:25
Alignment explanation
Indices: 51536895--51536964 Score: 83
Period size: 25 Copynumber: 2.8 Consensus size: 25
51536885 AATATATAAA
51536895 ATAAT-ATATATATATAGTAA-AATGT
1 ATAATAATATA-ATATA-TAATAATGT
*
51536920 AT-GTAATATAATATATAATAATGT
1 ATAATAATATAATATATAATAATGT
*
51536944 ATAATAATATAATAAATAATA
1 ATAATAATATAATATATAATA
51536965 TACAAATATA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
23 3 0.08
24 13 0.33
25 23 0.59
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.39
Consensus pattern (25 bp):
ATAATAATATAATATATAATAATGT
Found at i:51536966 original size:20 final size:19
Alignment explanation
Indices: 51536923--51536975 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
51536913 AAAATGTATG
51536923 TAATATAAT-ATATAATAA
1 TAATATAATAATATAATAA
*
51536941 T-GTATAATAATATAATAAA
1 TAATATAATAATATAAT-AA
51536960 TAATATACA-AATATAA
1 TAATATA-ATAATATAA
51536976 ATACTATATG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
17 6 0.21
18 8 0.28
19 3 0.10
20 11 0.38
21 1 0.03
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (19 bp):
TAATATAATAATATAATAA
Found at i:51539039 original size:15 final size:16
Alignment explanation
Indices: 51539021--51539053 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
51539011 ATAAGCAAAT
*
51539021 TATAAA-CATATAAAA
1 TATAAATCAAATAAAA
51539036 TATAAATCAAATAAAA
1 TATAAATCAAATAAAA
51539052 TA
1 TA
51539054 AAAAAAAAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (16 bp):
TATAAATCAAATAAAA
Found at i:51539346 original size:21 final size:20
Alignment explanation
Indices: 51539322--51539387 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 20
51539312 TAATAAAATT
51539322 TATAAACAAAATATATAATGA
1 TATAAACAAAATATATAAT-A
*
51539343 TATAAACAATATGATAGATAATA
1 TATAAACAA-A--ATATATAATA
*
51539366 TATAAA-ATAATATAT-ATA
1 TATAAACAAAATATATAATA
51539384 TATA
1 TATA
51539388 GTAAAATGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
18 7 0.18
19 5 0.13
21 10 0.26
22 2 0.05
23 7 0.18
24 8 0.21
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.33
Consensus pattern (20 bp):
TATAAACAAAATATATAATA
Found at i:51539423 original size:10 final size:10
Alignment explanation
Indices: 51539331--51539443 Score: 63
Period size: 10 Copynumber: 10.6 Consensus size: 10
51539321 TTATAAACAA
51539331 AATATATAAT
1 AATATATAAT
* *
51539341 GATATA-AAC
1 AATATATAAT
51539350 AATATGATAGAT
1 AATAT-ATA-AT
51539362 AATATATAA-
1 AATATATAAT
51539371 AATA-ATATAT
1 AATATATA-AT
51539381 ATATATAGTAA-
1 A-ATATA-TAAT
*
51539392 AATGTATGTAATAT
1 AA--TATAT-A-AT
51539406 AATATATAAT
1 AATATATAAT
*
51539416 AATGTATAAT
1 AATATATAAT
51539426 AATATAATAAAT
1 AATAT-AT-AAT
51539438 AATATA
1 AATATA
51539444 CAAATATAAA
Statistics
Matches: 80, Mismatches: 8, Indels: 29
0.68 0.07 0.25
Matches are distributed among these distances:
8 3 0.04
9 11 0.14
10 24 0.30
11 13 0.16
12 24 0.30
13 3 0.04
14 2 0.03
ACGTcount: A:0.57, C:0.01, G:0.06, T:0.36
Consensus pattern (10 bp):
AATATATAAT
Found at i:51539428 original size:25 final size:25
Alignment explanation
Indices: 51539372--51539441 Score: 83
Period size: 25 Copynumber: 2.8 Consensus size: 25
51539362 AATATATAAA
51539372 ATAAT-ATATATATATAGTAA-AATGT
1 ATAATAATATA-ATATA-TAATAATGT
*
51539397 AT-GTAATATAATATATAATAATGT
1 ATAATAATATAATATATAATAATGT
*
51539421 ATAATAATATAATAAATAATA
1 ATAATAATATAATATATAATA
51539442 TACAAATATA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
23 3 0.08
24 13 0.33
25 23 0.59
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.39
Consensus pattern (25 bp):
ATAATAATATAATATATAATAATGT
Found at i:51539443 original size:20 final size:19
Alignment explanation
Indices: 51539400--51539452 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
51539390 AAAATGTATG
51539400 TAATATAAT-ATATAATAA
1 TAATATAATAATATAATAA
*
51539418 T-GTATAATAATATAATAAA
1 TAATATAATAATATAAT-AA
51539437 TAATATACA-AATATAA
1 TAATATA-ATAATATAA
51539453 ATACTATATG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
17 6 0.21
18 8 0.28
19 3 0.10
20 11 0.38
21 1 0.03
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (19 bp):
TAATATAATAATATAATAA
Found at i:51542822 original size:47 final size:47
Alignment explanation
Indices: 51542754--51542883 Score: 154
Period size: 47 Copynumber: 2.8 Consensus size: 47
51542744 GTGCGAATAA
* * * *** *
51542754 TACCTTGATTCT-GCTATGGGCCATGATATAGGTATTTTGAGAGGAGC
1 TACCTTGATT-TGGCTACGGGCCATGGTATAGGTACTCCAAGAGAAGC
* *
51542801 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCAAGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCAAGAGAAGC
*
51542848 TACCTTGATTTGCCTACGGGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
51542884 TATCGATTGT
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
46 1 0.01
47 71 0.99
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.32
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCAAGAGAAGC
Found at i:51547266 original size:49 final size:49
Alignment explanation
Indices: 51547167--51547266 Score: 123
Period size: 49 Copynumber: 2.0 Consensus size: 49
51547157 GTATTTTATT
* * * * *
51547167 TTAGAATAAGGTTTTTCAACTTTATTACACTTCATCTATTTAATATTGA
1 TTAGAATAAGGTGTTTCAACCTCACTACACTTCATCTATTGAATATTGA
51547216 TTAGAATAAGGTGTTTCAACCTCACTACAC-TCATTCTATTAGAATA-TGA
1 TTAGAATAAGGTGTTTCAACCTCACTACACTTCA-TCTATT-GAATATTGA
51547265 TT
1 TT
51547267 TTACAAGTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
48 3 0.07
49 37 0.84
50 4 0.09
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.42
Consensus pattern (49 bp):
TTAGAATAAGGTGTTTCAACCTCACTACACTTCATCTATTGAATATTGA
Found at i:51553020 original size:31 final size:31
Alignment explanation
Indices: 51552961--51553025 Score: 80
Period size: 30 Copynumber: 2.1 Consensus size: 31
51552951 GTACAAAATC
*
51552961 AAAGTTCATGCATAATATTTAAATTAAA-CA
1 AAAGCTCATGCATAATATTTAAATTAAACCA
*
51552991 AAAGCTCATGTATAATA-TTACGAATTAAACCA
1 AAAGCTCATGCATAATATTTA--AATTAAACCA
51553023 AAA
1 AAA
51553026 TTCATGTGCA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 3 0.10
30 15 0.50
31 7 0.23
32 5 0.17
ACGTcount: A:0.51, C:0.12, G:0.08, T:0.29
Consensus pattern (31 bp):
AAAGCTCATGCATAATATTTAAATTAAACCA
Found at i:51553031 original size:31 final size:29
Alignment explanation
Indices: 51552960--51553032 Score: 76
Period size: 31 Copynumber: 2.4 Consensus size: 29
51552950 TGTACAAAAT
* *
51552960 CAAAGTTCATGCATAATATTTAAATTAAA
1 CAAAATTCATGTATAATATTTAAATTAAA
*
51552989 CAAAAGCTCATGTATAATA-TTACGAATTAAA
1 CAAAA-TTCATGTATAATATTTA--AATTAAA
51553020 CCAAAATTCATGT
1 -CAAAATTCATGT
51553033 GCAATTTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
29 7 0.19
30 11 0.31
31 13 0.36
32 5 0.14
ACGTcount: A:0.47, C:0.14, G:0.08, T:0.32
Consensus pattern (29 bp):
CAAAATTCATGTATAATATTTAAATTAAA
Found at i:51558116 original size:15 final size:15
Alignment explanation
Indices: 51558091--51558129 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
51558081 TCAAACTTCT
51558091 TTGTT-TTTGTTTTG
1 TTGTTGTTTGTTTTG
*
51558105 TTGTTGTTTGTTTTT
1 TTGTTGTTTGTTTTG
51558120 TTGTTTGTTT
1 TTG-TTGTTT
51558130 TCTCTTTGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 5 0.23
15 11 0.50
16 6 0.27
ACGTcount: A:0.00, C:0.00, G:0.21, T:0.79
Consensus pattern (15 bp):
TTGTTGTTTGTTTTG
Found at i:51560171 original size:43 final size:43
Alignment explanation
Indices: 51560087--51560172 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
51560077 GATATATGTG
* *
51560087 GCATCCGAGCTCGTTGAGTGGTCCGAGTTCATTATGGATGCGA
1 GCATCCGAGCTCGTTGAGTGGTCCGAGTTCATAATGAATGCGA
* *
51560130 GCATCCGAGCTCGTTGAGTGGTCTGAGTTCCTAATGAATGCGA
1 GCATCCGAGCTCGTTGAGTGGTCCGAGTTCATAATGAATGCGA
51560173 TACATGTGAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (43 bp):
GCATCCGAGCTCGTTGAGTGGTCCGAGTTCATAATGAATGCGA
Found at i:51562692 original size:38 final size:38
Alignment explanation
Indices: 51562585--51562701 Score: 119
Period size: 38 Copynumber: 3.1 Consensus size: 38
51562575 AATGTAATGT
* * ***
51562585 TATTAGGGCTATGTGCCTAGTAGGCTTTGTATTGGTGA
1 TATTCGGGCTATGTGCCTAGCAGGCTTTGTGCCGGTGA
* * * *
51562623 TATTCAGGTTGTGTGCCTAGCAGGCTATGTGCCGGTGA
1 TATTCGGGCTATGTGCCTAGCAGGCTTTGTGCCGGTGA
* * *
51562661 TGTTTGGGCTATGTGCCTAGCAGGCTTTGTGCCAGTG-
1 TATTCGGGCTATGTGCCTAGCAGGCTTTGTGCCGGTGA
51562698 TATT
1 TATT
51562702 GAAATTTTAC
Statistics
Matches: 62, Mismatches: 17, Indels: 1
0.77 0.21 0.01
Matches are distributed among these distances:
37 3 0.05
38 59 0.95
ACGTcount: A:0.15, C:0.15, G:0.32, T:0.37
Consensus pattern (38 bp):
TATTCGGGCTATGTGCCTAGCAGGCTTTGTGCCGGTGA
Found at i:51567978 original size:35 final size:35
Alignment explanation
Indices: 51567932--51568002 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
51567922 TATATATGTA
*
51567932 TGAATTTAGTATCTAGTAAGACTTTGCCTGTAGAG
1 TGAATTTAGTATCTAGTAAGACTTTGACTGTAGAG
51567967 TGAATTTAGTATCTAGTAAGACTTTGACTGTAGAG
1 TGAATTTAGTATCTAGTAAGACTTTGACTGTAGAG
51568002 T
1 T
51568003 CTATTGAATT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.30, C:0.10, G:0.23, T:0.38
Consensus pattern (35 bp):
TGAATTTAGTATCTAGTAAGACTTTGACTGTAGAG
Found at i:51574775 original size:18 final size:19
Alignment explanation
Indices: 51574739--51574776 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
51574729 ACTCATTTCT
* *
51574739 TAATTAATTATTTTGACTG
1 TAATTAATTATCTTAACTG
51574758 TAATT-ATTATCTTAACTG
1 TAATTAATTATCTTAACTG
51574776 T
1 T
51574777 TCTTTTGGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.32, C:0.08, G:0.08, T:0.53
Consensus pattern (19 bp):
TAATTAATTATCTTAACTG
Found at i:51575483 original size:24 final size:24
Alignment explanation
Indices: 51575456--51575503 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
51575446 GTAGTCGGTG
51575456 TAAGAAAGCCCCTTTTAACCTAGA
1 TAAGAAAGCCCCTTTTAACCTAGA
*
51575480 TAAGAAAGCCCCTTTTAGCCTAGA
1 TAAGAAAGCCCCTTTTAACCTAGA
51575504 CAAAGTGCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (24 bp):
TAAGAAAGCCCCTTTTAACCTAGA
Found at i:51578723 original size:43 final size:44
Alignment explanation
Indices: 51578674--51578844 Score: 172
Period size: 43 Copynumber: 4.0 Consensus size: 44
51578664 GATTACCGAG
*
51578674 ATGTGATTACATGTAAGACCATGTCTAGGACAGTGGCATTGTAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACAGTGGCATTGTAT
** *
51578718 -TGTGATTATGTGTAAGACCATGTCTGGGACATTGGC-TTCGT-T
1 ATGTGATTACATGTAAGACCATGTCTGGGACAGTGGCATT-GTAT
* * * * * *
51578760 ATATGATTTCGTGTAAGACCCTGTCTGAGACAGTGGCATCG-AT
1 ATGTGATTACATGTAAGACCATGTCTGGGACAGTGGCATTGTAT
* * * *
51578803 ATGTGATAACATGTAAGACTATATCTGGGATA-TGGCATTGTA
1 ATGTGATTACATGTAAGACCATGTCTGGGACAGTGGCATTGTA
51578845 CAAGCTTTAT
Statistics
Matches: 101, Mismatches: 21, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
42 10 0.10
43 90 0.89
44 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACAGTGGCATTGTAT
Found at i:51584879 original size:16 final size:17
Alignment explanation
Indices: 51584847--51584880 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
51584837 TGGGATAGTG
51584847 TTTGTTTAATGTTTATT
1 TTTGTTTAATGTTTATT
*
51584864 TTTGTTT-ATTTTTATT
1 TTTGTTTAATGTTTATT
51584880 T
1 T
51584881 CATAATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.15, C:0.00, G:0.09, T:0.76
Consensus pattern (17 bp):
TTTGTTTAATGTTTATT
Found at i:51586602 original size:17 final size:18
Alignment explanation
Indices: 51586580--51586614 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
51586570 ATTTAGACTG
51586580 TGTGGGCC-ACAAGGGTA
1 TGTGGGCCTACAAGGGTA
*
51586597 TGTGGGCCTACATGGGTA
1 TGTGGGCCTACAAGGGTA
51586615 GGCCATAGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.20, C:0.17, G:0.40, T:0.23
Consensus pattern (18 bp):
TGTGGGCCTACAAGGGTA
Found at i:51587394 original size:18 final size:17
Alignment explanation
Indices: 51587359--51587394 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
51587349 CAAACTGGGC
*
51587359 CGTGTGGGCCATATGGG
1 CGTGTGGGCCATACGGG
51587376 CGTGTGGGCCTATACGGG
1 CGTGTGGGCC-ATACGGG
51587394 C
1 C
51587395 AGGCCATAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.11, C:0.22, G:0.44, T:0.22
Consensus pattern (17 bp):
CGTGTGGGCCATACGGG
Found at i:51592449 original size:20 final size:20
Alignment explanation
Indices: 51592424--51592461 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
51592414 GTCACATATA
51592424 TCATGAACTCAGACCACAAC
1 TCATGAACTCAGACCACAAC
* *
51592444 TCATGAGCTCAGATCACA
1 TCATGAACTCAGACCACA
51592462 TAGTTCCTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.32, G:0.13, T:0.18
Consensus pattern (20 bp):
TCATGAACTCAGACCACAAC
Found at i:51603049 original size:131 final size:129
Alignment explanation
Indices: 51602845--51603249 Score: 355
Period size: 131 Copynumber: 3.1 Consensus size: 129
51602835 TTCACTATTA
* * * * * **
51602845 TTTAAGAATCCTTTAAATCGAAGGTGATATTCGACATTTGGCAATTCGCGAGATCGTGCCCTAAC
1 TTTAAAAATTCTTTAAAT-GAAGGCGATATTCGATATTTGACAATTCGCGA-ATCGTGCCCTATT
** *
51602910 GTGTTGGGTTGCAATCTCTCATTTGCTCAAAGTAATCGAAGGTCCCTTTAGAATTTCACCCATGT
64 GTGTTGGGTTGCAATCTCTCATTTGCTCAAAACAATCGAAGATCCCTTTAGAATTTCACCCATG-
51602975 CT
128 CT
*
51602977 TTTAAAAATTCTTTAAATGAAGGCGATATTCGATATTTGACGATTCGCAGAATCGTGCCCTATTG
1 TTTAAAAATTCTTTAAATGAAGGCGATATTCGATATTTGACAATTCGC-GAATCGTGCCCTATTG
* ** * * * * * ** *
51603042 TGCTGGGTTGTGATTTCTCGTTTGTTCAAAACAATCGAATATTCCTTTAGGTTTTCACTCATGCT
65 TGTTGGGTTGCAATCTCTCATTTGCTCAAAACAATCGAAGATCCCTTTAGAATTTCACCCATGCT
** * * * * * *
51603107 TTTAAAAATTCTCCAAAATGAAGGCAATACTCGGTGTTT-AGCAATTCGGGAATCATGCCCTATT
1 TTTAAAAATTCT-TTAAATGAAGGCGATATTCGATATTTGA-CAATTCGCGAATCGTGCCCTATT
** * ** * * * * * *
51603171 GTGTTGGGTTGTGATTTCTTGTTTGTTCAAAACAATCGGATATTCCTTTAG-GTTATCACTCATG
64 GTGTTGGGTTGCAATCTCTCATTTGCTCAAAACAATCGAAGATCCCTTTAGAATT-TCACCCATG
51603235 CT
128 CT
51603237 TTTAAAAAATTCT
1 TTT-AAAAATTCT
51603250 CCAAAACGAA
Statistics
Matches: 233, Mismatches: 35, Indels: 11
0.84 0.13 0.04
Matches are distributed among these distances:
129 2 0.01
130 91 0.39
131 122 0.52
132 18 0.08
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (129 bp):
TTTAAAAATTCTTTAAATGAAGGCGATATTCGATATTTGACAATTCGCGAATCGTGCCCTATTGT
GTTGGGTTGCAATCTCTCATTTGCTCAAAACAATCGAAGATCCCTTTAGAATTTCACCCATGCT
Found at i:51603183 original size:130 final size:131
Alignment explanation
Indices: 51602954--51603313 Score: 476
Period size: 130 Copynumber: 2.7 Consensus size: 131
51602944 ATCGAAGGTC
** * ** * * *
51602954 CCTTTAGAATTTCACCCATGTCTTTTAAAAATTCT-TTAAATGAAGGCGATATTCGATATTT-GA
1 CCTTTAGGTTTTCACTCATG-CTTTTAAAAATTCTCCAAAATGAAGGCAATACTCGATGTTTAG-
*
51603017 CGATTCGCA-GAATCGTGCCCTATTGTGCTGGGTTGTGATTTCTCGTTTGTTCAAAACAATCGAA
64 CAATTCG-AGGAATCGTGCCCTATTGTGCTGGGTTGTGATTTCTCGTTTGTTCAAAACAATCGAA
51603081 TATT
128 TATT
*
51603085 CCTTTAGGTTTTCACTCATGCTTTTAAAAATTCTCCAAAATGAAGGCAATACTCGGTGTTTAGCA
1 CCTTTAGGTTTTCACTCATGCTTTTAAAAATTCTCCAAAATGAAGGCAATACTCGATGTTTAGCA
* * * *
51603150 ATTCG-GGAATCATGCCCTATTGTGTTGGGTTGTGATTTCTTGTTTGTTCAAAACAATCGGATAT
66 ATTCGAGGAATCGTGCCCTATTGTGCTGGGTTGTGATTTCTCGTTTGTTCAAAACAATCGAATAT
51603214 T
131 T
* *
51603215 CCTTTAGGTTATCACTCATGCTTTTAAAAAATTCTCCAAAACGAAGGCAATACTCGATGTTTAGG
1 CCTTTAGGTTTTCACTCATGCTTTT-AAAAATTCTCCAAAATGAAGGCAATACTCGATGTTTA-G
* * *
51603280 AAATCCGAGGAATCGTGCCCTACTGTGCTGGGTT
64 CAATTCGAGGAATCGTGCCCTATTGTGCTGGGTT
51603314 TCGGTTTTTC
Statistics
Matches: 201, Mismatches: 22, Indels: 10
0.86 0.09 0.04
Matches are distributed among these distances:
130 93 0.46
131 78 0.39
132 7 0.03
133 23 0.11
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (131 bp):
CCTTTAGGTTTTCACTCATGCTTTTAAAAATTCTCCAAAATGAAGGCAATACTCGATGTTTAGCA
ATTCGAGGAATCGTGCCCTATTGTGCTGGGTTGTGATTTCTCGTTTGTTCAAAACAATCGAATAT
T
Found at i:51605862 original size:15 final size:15
Alignment explanation
Indices: 51605842--51605874 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
51605832 TAATTCACGA
51605842 AAATTT-CACAAATAT
1 AAATTTACACAAA-AT
51605857 AAATTTACACAAAAT
1 AAATTTACACAAAAT
51605872 AAA
1 AAA
51605875 CACAGAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.61, C:0.12, G:0.00, T:0.27
Consensus pattern (15 bp):
AAATTTACACAAAAT
Found at i:51617745 original size:20 final size:21
Alignment explanation
Indices: 51617705--51617746 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
51617695 GAATAATTTG
51617705 AATAAGAACATAGCTCACATA
1 AATAAGAACATAGCTCACATA
* *
51617726 AATAA-AACATAGTTCGCATA
1 AATAAGAACATAGCTCACATA
51617746 A
1 A
51617747 TAATAGCGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.52, C:0.17, G:0.10, T:0.21
Consensus pattern (21 bp):
AATAAGAACATAGCTCACATA
Found at i:51623613 original size:21 final size:21
Alignment explanation
Indices: 51623567--51623616 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
51623557 ATAATAGTAT
*
51623567 AATCAAAACATAAAGTTTATA
1 AATCCAAACATAAAGTTTATA
51623588 AATCCAAACATAAAGTTTATA
1 AATCCAAACATAAAGTTTATA
51623609 AATCCAAA
1 AATCCAAA
51623617 TTATATAATC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.56, C:0.14, G:0.04, T:0.26
Consensus pattern (21 bp):
AATCCAAACATAAAGTTTATA
Found at i:51630064 original size:24 final size:24
Alignment explanation
Indices: 51630037--51630128 Score: 76
Period size: 24 Copynumber: 3.8 Consensus size: 24
51630027 ACCTATTATA
*
51630037 GGCTCGCATGAGCTTCCTGAATAT
1 GGCTAGCATGAGCTTCCTGAATAT
** * *
51630061 GGCTATTATGAGCTTCCTGTTATAC
1 GGCTAGCATGAGCTTCCTG-AATAT
** * *
51630086 AACCAGCATGAGCTTCTTGAATAT
1 GGCTAGCATGAGCTTCCTGAATAT
**
51630110 GGCTATTATGAGCTTCCTG
1 GGCTAGCATGAGCTTCCTG
51630129 TTATACAACC
Statistics
Matches: 48, Mismatches: 19, Indels: 2
0.70 0.28 0.03
Matches are distributed among these distances:
24 32 0.67
25 16 0.33
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.34
Consensus pattern (24 bp):
GGCTAGCATGAGCTTCCTGAATAT
Found at i:51630107 original size:49 final size:49
Alignment explanation
Indices: 51630042--51630183 Score: 187
Period size: 49 Copynumber: 2.9 Consensus size: 49
51630032 TTATAGGCTC
51630042 GCATGAGCTTCCTGAATATGGCTATTATGAGCTTCCTGTTATACAACCA
1 GCATGAGCTTCCTGAATATGGCTATTATGAGCTTCCTGTTATACAACCA
* *
51630091 GCATGAGCTTCTTGAATATGGCTATTATGAGCTTCCTGTTATACAACCC
1 GCATGAGCTTCCTGAATATGGCTATTATGAGCTTCCTGTTATACAACCA
* * ** * *
51630140 GGATAAGCTTCCCTTTACATGGCTCA-CATGAGCTTCCTGTTATA
1 GCATGAGCTT-CCTGAATATGGCT-ATTATGAGCTTCCTGTTATA
51630184 TGCTCAAGAG
Statistics
Matches: 82, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
49 55 0.67
50 26 0.32
51 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (49 bp):
GCATGAGCTTCCTGAATATGGCTATTATGAGCTTCCTGTTATACAACCA
Found at i:51632093 original size:21 final size:21
Alignment explanation
Indices: 51632069--51632118 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
51632059 GATTATATAA
51632069 TTTGGATTTATAAACTTTATG
1 TTTGGATTTATAAACTTTATG
51632090 TTTGGATTTATAAACTTTATG
1 TTTGGATTTATAAACTTTATG
*
51632111 TTTTGATT
1 TTTGGATT
51632119 ATACTATTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.26, C:0.04, G:0.14, T:0.56
Consensus pattern (21 bp):
TTTGGATTTATAAACTTTATG
Found at i:51636710 original size:37 final size:37
Alignment explanation
Indices: 51636653--51636758 Score: 162
Period size: 37 Copynumber: 2.9 Consensus size: 37
51636643 TATGATCACT
*
51636653 TATCAC-TTGTC-CCTGATCAGATAAGTGTAGCCACC
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
* *
51636688 TATCACTTTGTTTCTTGATCAGATAAGTGTAGCCACT
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
*
51636725 TATCACTTTGTCTCTTGATCAGATAAGTATAGCC
1 TATCACTTTGTCTCTTGATCAGATAAGTGTAGCC
51636759 GAAGCTATCA
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
35 6 0.09
36 4 0.06
37 54 0.84
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (37 bp):
TATCACTTTGTCTCTTGATCAGATAAGTGTAGCCACC
Found at i:51636800 original size:52 final size:52
Alignment explanation
Indices: 51636721--51636995 Score: 505
Period size: 52 Copynumber: 5.2 Consensus size: 52
51636711 TAAGTGTAGC
* * *
51636721 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
51636774 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
51636826 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
51636878 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
51636930 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
51636982 CACTTTGTCACTTG
1 CACTTT-TCACTTG
51636996 ATCAGAAGTA
Statistics
Matches: 218, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
52 202 0.93
53 16 0.07
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (52 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
Found at i:51641094 original size:20 final size:21
Alignment explanation
Indices: 51641071--51641112 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
51641061 TCCGCTATTA
51641071 TTATGCGAACTATGTT-TTAT
1 TTATGCGAACTATGTTCTTAT
* *
51641091 TTATGTGAGCTATGTTCTTAT
1 TTATGCGAACTATGTTCTTAT
51641112 T
1 T
51641113 CAAATTATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.21, C:0.10, G:0.17, T:0.52
Consensus pattern (21 bp):
TTATGCGAACTATGTTCTTAT
Found at i:51644341 original size:42 final size:42
Alignment explanation
Indices: 51644277--51644365 Score: 133
Period size: 42 Copynumber: 2.1 Consensus size: 42
51644267 TCCTAATTGG
* *
51644277 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAATATAAAA
1 GAAAATAGTTCCCTTATCCTAATAAACTACTAAAAGATAAAA
* *
51644319 GAAAATAGTTTCCTTGTCCTAATAAACTACTAAAAGATAAAA
1 GAAAATAGTTCCCTTATCCTAATAAACTACTAAAAGATAAAA
*
51644361 TAAAA
1 GAAAA
51644366 ATATTCCTAG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.51, C:0.13, G:0.07, T:0.29
Consensus pattern (42 bp):
GAAAATAGTTCCCTTATCCTAATAAACTACTAAAAGATAAAA
Found at i:51644412 original size:19 final size:19
Alignment explanation
Indices: 51644390--51644443 Score: 108
Period size: 19 Copynumber: 2.8 Consensus size: 19
51644380 TGAATAAAAC
51644390 TTATCTACCTAAATAAGAT
1 TTATCTACCTAAATAAGAT
51644409 TTATCTACCTAAATAAGAT
1 TTATCTACCTAAATAAGAT
51644428 TTATCTACCTAAATAA
1 TTATCTACCTAAATAA
51644444 ATTGAAAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 35 1.00
ACGTcount: A:0.43, C:0.17, G:0.04, T:0.37
Consensus pattern (19 bp):
TTATCTACCTAAATAAGAT
Found at i:51648313 original size:42 final size:42
Alignment explanation
Indices: 51648249--51648337 Score: 124
Period size: 42 Copynumber: 2.1 Consensus size: 42
51648239 GCCTAATGGG
* * *
51648249 GAAAATGGTTCCCTTATTCTAATAAACTACTAAAATATAAAA
1 GAAAATAGTTCCCTTATCCTAATAAACTACTAAAAGATAAAA
* *
51648291 GAAAATAGTTCCCTTGTCCTAATAAACTGCTAAAAGATAAAA
1 GAAAATAGTTCCCTTATCCTAATAAACTACTAAAAGATAAAA
*
51648333 TAAAA
1 GAAAA
51648338 ATATTCCTAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.48, C:0.15, G:0.09, T:0.28
Consensus pattern (42 bp):
GAAAATAGTTCCCTTATCCTAATAAACTACTAAAAGATAAAA
Found at i:51648384 original size:19 final size:18
Alignment explanation
Indices: 51648362--51648401 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
51648352 TGAATAAAAC
51648362 TTATCTACCTAAATAAGAT
1 TTATCTACCTAAATAA-AT
51648381 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
51648399 TTA
1 TTA
51648402 AAATATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:51653649 original size:26 final size:26
Alignment explanation
Indices: 51653620--51653731 Score: 104
Period size: 26 Copynumber: 4.3 Consensus size: 26
51653610 ATGATTAGAG
** *
51653620 ATTTAATTTAGTTAAGACAATTAAGA
1 ATTTAATTTAAATAAGATAATTAAGA
*
51653646 ATTTAAATT-AATAGAGATAATT-AGA
1 ATTTAATTTAAATA-AGATAATTAAGA
* * *
51653671 GTTTAAATTAAATTAGGATAATTAA-A
1 ATTTAATTTAAA-TAAGATAATTAAGA
*
51653697 ATTTTAATTTAAATAAGATAATTAGGA
1 A-TTTAATTTAAATAAGATAATTAAGA
51653724 ATTTAATT
1 ATTTAATT
51653732 AATAGGTTGG
Statistics
Matches: 70, Mismatches: 10, Indels: 12
0.76 0.11 0.13
Matches are distributed among these distances:
25 13 0.19
26 42 0.60
27 15 0.21
ACGTcount: A:0.48, C:0.01, G:0.11, T:0.40
Consensus pattern (26 bp):
ATTTAATTTAAATAAGATAATTAAGA
Found at i:51653780 original size:105 final size:106
Alignment explanation
Indices: 51653671--51654184 Score: 529
Period size: 105 Copynumber: 4.9 Consensus size: 106
51653661 GATAATTAGA
* * * **
51653671 GTTTAAATTAAATTAGGATAATTAAAATTTTAATTTAAATAAGATAATTAGGAATTT-AATTAAT
1 GTTTAAATTAAATTAGGATAATTAGAGTTTTAATTTAAATAAGAAAATTAATAATTTAAATTAAT
* * * *
51653735 AGGTTGGATAATAATTTAGATTTTAGTTAAGGTAAGTAG-GT
66 AGATTAGATAATAATTTAGA-TTTAGTTAAGATAAGTAGAAT
* ** ** ** *
51653776 GTTTAAATTAAATTAGAATAATTAGAGTTCAAATTTATTTAAGATTATTAATAATTTAAATTAAA
1 GTTTAAATTAAATTAGGATAATTAGAGTTTTAATTTAAATAAGAAAATTAATAATTTAAATTAAT
* * * *
51653841 ATATTAGGTAATAATTTAGATTTAGAT-A-ATTA-T-G-A-
66 AGATTAGATAATAATTTAGATTTAGTTAAGATAAGTAGAAT
* * **
51653876 GTTTAAATTGAATTAGGATAATTAGAGTTTTAATTTAGATAATG-AAATTAGGAATTT-AATTAA
1 GTTTAAATTAAATTAGGATAATTAGAGTTTTAATTTAAATAA-GAAAATTAATAATTTAAATTAA
*
51653939 CAGATTAGATAATAATTTAGATTTAGTTAAGATAAGTAGAAT
65 TAGATTAGATAATAATTTAGATTTAGTTAAGATAAGTAGAAT
* * * * *
51653981 -TTTAAATTAAGTTAGGATGATTAGAGTCTTAA-TTAATTCTAA-AAAATTAATAATTTAAATCA
1 GTTTAAATTAAATTAGGATAATTAGAGTTTTAATTTAA--ATAAGAAAATTAATAATTTAAATTA
51654043 ATAGATTAGATAATAATTTAGATTTAGTTAAGATAAGTAGAAT
64 ATAGATTAGATAATAATTTAGATTTAGTTAAGATAAGTAGAAT
* * * * *
51654086 -TTTAAATTAAGTTAGGATGATTAGAGTCTTAA-TTAATTTTAA-AAAATTAATAATTTAAATCA
1 GTTTAAATTAAATTAGGATAATTAGAGTTTTAATTTAA--ATAAGAAAATTAATAATTTAAATTA
51654148 ATAGATTAGATAATAATTTAGATTTTAGTTAAGATAA
64 ATAGATTAGATAATAATTTAGA-TTTAGTTAAGATAA
51654185 TTCAGAGTTT
Statistics
Matches: 351, Mismatches: 45, Indels: 25
0.83 0.11 0.06
Matches are distributed among these distances:
99 30 0.09
100 46 0.13
101 5 0.01
102 2 0.01
103 6 0.02
104 41 0.12
105 185 0.53
106 36 0.10
ACGTcount: A:0.45, C:0.01, G:0.13, T:0.41
Consensus pattern (106 bp):
GTTTAAATTAAATTAGGATAATTAGAGTTTTAATTTAAATAAGAAAATTAATAATTTAAATTAAT
AGATTAGATAATAATTTAGATTTAGTTAAGATAAGTAGAAT
Found at i:51653993 original size:27 final size:27
Alignment explanation
Indices: 51653954--51654099 Score: 65
Period size: 27 Copynumber: 5.5 Consensus size: 27
51653944 TAGATAATAA
* *
51653954 TTTAGATTTAGTTAAGATAAGTAGAAT
1 TTTAAATTAAGTTAAGATAAGTAGAAT
* * * *
51653981 TTTAAATTAAGTTAGGATGATTAGAGT
1 TTTAAATTAAGTTAAGATAAGTAGAAT
* * * * *
51654008 CTT-AATTAATTCTAA-AAAATTA-ATAA
1 TTTAAATTAAGT-TAAGATAAGTAGA-AT
*
51654034 TTTAAATCAATAGATT-AGATAA-T--AA-
1 TTTAAAT-TA-AG-TTAAGATAAGTAGAAT
* *
51654059 TTTAGATTTAGTTAAGATAAGTAGAAT
1 TTTAAATTAAGTTAAGATAAGTAGAAT
51654086 TTTAAATTAAGTTA
1 TTTAAATTAAGTTA
51654100 GGATGATTAG
Statistics
Matches: 85, Mismatches: 22, Indels: 24
0.65 0.17 0.18
Matches are distributed among these distances:
22 2 0.02
23 8 0.09
24 1 0.01
25 7 0.08
26 17 0.20
27 41 0.48
28 3 0.04
29 5 0.06
30 1 0.01
ACGTcount: A:0.45, C:0.02, G:0.13, T:0.40
Consensus pattern (27 bp):
TTTAAATTAAGTTAAGATAAGTAGAAT
Found at i:51654033 original size:204 final size:203
Alignment explanation
Indices: 51653660--51654184 Score: 603
Period size: 204 Copynumber: 2.5 Consensus size: 203
51653650 AAATTAATAG
* *
51653660 AGATAATTA-GAGTTTAAATTAAATTAGGATAATTAAAATTTTAATTTAAATAAGATAATTAGGA
1 AGATAATTATGAGTTTAAATT-AATTAGGATAATTAGAGTTTTAATTTAAATAAGA-AATTAGGA
* * * *
51653724 ATTTAATTAATAGGTTGGATAATAATTTAGATTTTAGTTAAGGTAAGTAGGTGTTTAAATTAAAT
64 ATTTAATTAATAGATTAGATAATAATTTAGATTTTAGTTAAGATAAGTAGATGTTTAAATTAAAT
* ** * * *
51653789 TAGAATAATTAGAGTTCAAATTTATTTAAGATTATTAATAATTTAAATTAAAATATTAGGTAATA
129 TAGAATAATTAGAGTTCAAATTAATTTAAGAAAATTAATAATTTAAATCAAAAGATTAGATAATA
51653854 ATTTAGATTT
194 ATTTAGATTT
*
51653864 AGATAATTATGAGTTTAAATTGAATTAGGATAATTAGAGTTTTAATTTAGATAATGAAATTAGGA
1 AGATAATTATGAGTTTAAATT-AATTAGGATAATTAGAGTTTTAATTTAAATAA-GAAATTAGGA
* *
51653929 ATTTAATTAACAGATTAGATAATAATTTAGA-TTTAGTTAAGATAAGTAGAAT-TTTAAATTAAG
64 ATTTAATTAATAGATTAGATAATAATTTAGATTTTAGTTAAGATAAGTAG-ATGTTTAAATTAAA
* * * *
51653992 TTAGGATGATTAGAG-TCTTAATTAATTCTAA-AAAATTAATAATTTAAATCAATAGATTAGATA
128 TTAGAATAATTAGAGTTC-AAATTAATT-TAAGAAAATTAATAATTTAAATCAAAAGATTAGATA
51654055 ATAATTTAGATTT
191 ATAATTTAGATTT
* * * * * * *
51654068 AGTTAAGATAAGTAGAATTTTAAATTAAGTTAGGATGATTAGAGTCTTAA-TTAATTTTAAAAAA
1 AGAT-A-ATTA-T-G-AGTTTAAATTAA-TTAGGATAATTAGAGTTTTAATTTAA--ATAAGAAA
** *
51654132 TTAATAATTTAAATCAATAGATTAGATAATAATTTAGATTTTAGTTAAGATAA
58 TTAGGAATTT-AATTAATAGATTAGATAATAATTTAGATTTTAGTTAAGATAA
51654185 TTCAGAGTTT
Statistics
Matches: 274, Mismatches: 32, Indels: 23
0.83 0.10 0.07
Matches are distributed among these distances:
203 2 0.01
204 98 0.36
205 81 0.30
206 5 0.02
207 1 0.00
208 6 0.02
209 39 0.14
210 28 0.10
211 14 0.05
ACGTcount: A:0.45, C:0.01, G:0.13, T:0.40
Consensus pattern (203 bp):
AGATAATTATGAGTTTAAATTAATTAGGATAATTAGAGTTTTAATTTAAATAAGAAATTAGGAAT
TTAATTAATAGATTAGATAATAATTTAGATTTTAGTTAAGATAAGTAGATGTTTAAATTAAATTA
GAATAATTAGAGTTCAAATTAATTTAAGAAAATTAATAATTTAAATCAAAAGATTAGATAATAAT
TTAGATTT
Found at i:51655433 original size:6 final size:6
Alignment explanation
Indices: 51655424--51655448 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
51655414 AAGAAATTGA
51655424 AAGTGG AAGTGG AAGTGG AAGTGG A
1 AAGTGG AAGTGG AAGTGG AAGTGG A
51655449 GAAAGTGATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.48, T:0.16
Consensus pattern (6 bp):
AAGTGG
Found at i:51657353 original size:53 final size:52
Alignment explanation
Indices: 51657233--51657370 Score: 179
Period size: 53 Copynumber: 2.6 Consensus size: 52
51657223 TGCGCCCATT
*** **
51657233 TAAGACCATAGCTGGGATATGGCATCGGTACAATGTGATATATGTTCTCGTA
1 TAAGACCATAGCTGGGATATGGCATCGGTGTGACATGATATATGTTCTCGTA
* *
51657285 TAAGACCATAGCTGGGCTATGGCATCGGTGTGACATGATAATGTGATTC-CGTA
1 TAAGACCATAGCTGGGATATGGCATCGGTGTGACATGAT-ATATG-TTCTCGTA
*
51657338 TAAGACCATATCTGGGATATGGCATCGGTGTGA
1 TAAGACCATAGCTGGGATATGGCATCGGTGTGA
51657371 TGTGATCCGT
Statistics
Matches: 75, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
52 33 0.44
53 39 0.52
54 3 0.04
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (52 bp):
TAAGACCATAGCTGGGATATGGCATCGGTGTGACATGATATATGTTCTCGTA
Found at i:51660138 original size:12 final size:13
Alignment explanation
Indices: 51660123--51660154 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
51660113 ATAACACATT
51660123 TCAAAAC-ATGCA
1 TCAAAACTATGCA
51660135 TCAAAACTATGCA
1 TCAAAACTATGCA
51660148 -CAAAACT
1 TCAAAACT
51660155 TAACATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (13 bp):
TCAAAACTATGCA
Found at i:51660702 original size:42 final size:41
Alignment explanation
Indices: 51660610--51660761 Score: 126
Period size: 42 Copynumber: 3.6 Consensus size: 41
51660600 CAATACCGAC
* * * * * * *
51660610 GTCCCAGACATGGTCTTACATGTAATTCAGTATCGATGCCTCT
1 GTCCCAGACACGGTCTTATACGAAATACAATA-CGATGCC-AT
*
51660653 GTCCCAGACAGGGTCTTATACGAAA-ACAGATACGATGCCGAT
1 GTCCCAGACACGGTCTTATACGAAATACA-ATACGATGCC-AT
* * * *
51660695 GTCCCAGACATGGTCTTACACGTAAATTCCAATTCGATGCCAGT
1 GTCCCAGACACGGTCTTATACG-AAA-TACAATACGATGCCA-T
51660739 GTCCCAGACACGGTCTTATACGA
1 GTCCCAGACACGGTCTTATACGA
51660762 TAATTTAGAT
Statistics
Matches: 90, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
42 30 0.33
43 28 0.31
44 30 0.33
45 2 0.02
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (41 bp):
GTCCCAGACACGGTCTTATACGAAATACAATACGATGCCAT
Found at i:51660754 original size:86 final size:85
Alignment explanation
Indices: 51660605--51660761 Score: 235
Period size: 86 Copynumber: 1.8 Consensus size: 85
51660595 AAGTACAATA
* * * *
51660605 CCGACGTCCCAGACATGGTCTTACATGTAATTCAGTATCGATGCCTCTGTCCCAGACAGGGTCTT
1 CCGACGTCCCAGACATGGTCTTACACGTAATTCAATATCGATGCCACTGTCCCAGACACGGTCTT
51660670 ATACGAAAACAGATACGATG
66 ATACGAAAACAGATACGATG
* *
51660690 CCGATGTCCCAGACATGGTCTTACACGTAAATTCCAAT-TCGATGCCAGTGTCCCAGACACGGTC
1 CCGACGTCCCAGACATGGTCTTACACGT-AATT-CAATATCGATGCCACTGTCCCAGACACGGTC
51660754 TTATACGA
64 TTATACGA
51660762 TAATTTAGAT
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
85 26 0.41
86 35 0.55
87 3 0.05
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (85 bp):
CCGACGTCCCAGACATGGTCTTACACGTAATTCAATATCGATGCCACTGTCCCAGACACGGTCTT
ATACGAAAACAGATACGATG
Found at i:51668506 original size:43 final size:43
Alignment explanation
Indices: 51668440--51668526 Score: 115
Period size: 43 Copynumber: 2.0 Consensus size: 43
51668430 ATATAGTACA
**
51668440 ATGCCAATGTCCCAGACGTGGTCTTACAT-GTAGCCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTAC-TCGTAAACACATATCG
*
51668483 ATGCCACTGTCCCAGACAG-GGTCTTACTCGTAAACACATATCG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACTCGTAAACACATATCG
51668526 A
1 A
51668527 AATCAAAAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
42 1 0.03
43 37 0.95
44 1 0.03
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACTCGTAAACACATATCG
Found at i:51682566 original size:53 final size:52
Alignment explanation
Indices: 51682429--51682578 Score: 169
Period size: 52 Copynumber: 2.9 Consensus size: 52
51682419 GGAAAAGATG
** * *
51682429 TGATATGTGCACCCGTTTAAGACCATAAT-TGGGCTATGGCATCGGTGCAATA
1 TGATATGTGTTCCCGTATAAGACCAT-ATCTGGGCTATGGCATCGGTGCAACA
* * **
51682481 TGATATGTGTTCCCATATAAGACCATAGCTGGGCTATGGCATCGGTGTGACA
1 TGATATGTGTTCCCGTATAAGACCATATCTGGGCTATGGCATCGGTGCAACA
* *
51682533 TGATAATGTGATT-CCGTATAAGACTATATCTGGGATATGGCATCGG
1 TGAT-ATGTG-TTCCCGTATAAGACCATATCTGGGCTATGGCATCGG
51682579 GGTGTGGTGT
Statistics
Matches: 83, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
51 1 0.01
52 46 0.55
53 34 0.41
54 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (52 bp):
TGATATGTGTTCCCGTATAAGACCATATCTGGGCTATGGCATCGGTGCAACA
Found at i:51684702 original size:295 final size:296
Alignment explanation
Indices: 51684172--51684772 Score: 1152
Period size: 295 Copynumber: 2.0 Consensus size: 296
51684162 ACTTGTACTA
51684172 AAAAATATTTAATTTTTAGTGAAGAAGGGTCAGAGCTACCTAGCAGCAAAACAGGGGAAGATTTG
1 AAAAATATTTAATTTTTAGTGAAGAAGGGTCAGAGCTACCTAGCAGCAAAACAGGGGAAGATTTG
51684237 AAGAAAAAATAGTATTCATTGGCTTAAGTACAAATTCTAAAACTTTTATGGTATAAAGCTCATTG
66 AAGAAAAAATAGTATTCATTGGCTTAAGTACAAATTCTAAAACTTTTATGGTATAAAGCTCATTG
* *
51684302 AGTCTAGTTTTTTTTTTTAAAAAAAGCAAATCTTAATTTCAAATTTTATACATCGGGGTATAGAT
131 AGTCTAGTTTTTTTTTTTAAAAAAAGCAAATCTTAATTTCAAATTTTATACATCGAGGTATAAAT
51684367 AGATTAGTGACTATTACTCAAATGGACAACCTTGACAAGAGTATGTGTGTAATTAGAGAAACCTT
196 AGATTAGTGACTATTACTCAAATGGACAACCTTGACAAGAGTATGTGTGTAATTAGAGAAACCTT
*
51684432 ACTTAATGCTACATATAAGCATGATATGTTAAGA-G
261 AATTAATGCTACATATAAGCATGATATGTTAAGAGG
51684467 AAAAATATTTAATTTTTAGTGAAGAAGGGTCAGAGCTACCTAGCAGCAAAACAGGGGAAGATTTG
1 AAAAATATTTAATTTTTAGTGAAGAAGGGTCAGAGCTACCTAGCAGCAAAACAGGGGAAGATTTG
*
51684532 AAGAAAAAATAGTATTCATTGGCTTAAGTATAAATTCTAAAACTTTTATGGTATAAAGCTCATTG
66 AAGAAAAAATAGTATTCATTGGCTTAAGTACAAATTCTAAAACTTTTATGGTATAAAGCTCATTG
51684597 AGTCTAGTTTTTTTTTTTAAAAAAAGCAAATCTTAATTTCAAATTTTATACATCGAGGTATAAAT
131 AGTCTAGTTTTTTTTTTTAAAAAAAGCAAATCTTAATTTCAAATTTTATACATCGAGGTATAAAT
51684662 AGATTAGTGACTATTACTCAAATGGACAACCTTGACAAGAGTATGTGTGTAATTAGAGAAACCTT
196 AGATTAGTGACTATTACTCAAATGGACAACCTTGACAAGAGTATGTGTGTAATTAGAGAAACCTT
51684727 AATTAATGCTACATATAAGCATGATATGTTAAGAGG
261 AATTAATGCTACATATAAGCATGATATGTTAAGAGG
51684763 AAAAA-ATTTA
1 AAAAATATTTA
51684773 TATATATACA
Statistics
Matches: 301, Mismatches: 4, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
295 295 0.98
296 6 0.02
ACGTcount: A:0.40, C:0.11, G:0.17, T:0.33
Consensus pattern (296 bp):
AAAAATATTTAATTTTTAGTGAAGAAGGGTCAGAGCTACCTAGCAGCAAAACAGGGGAAGATTTG
AAGAAAAAATAGTATTCATTGGCTTAAGTACAAATTCTAAAACTTTTATGGTATAAAGCTCATTG
AGTCTAGTTTTTTTTTTTAAAAAAAGCAAATCTTAATTTCAAATTTTATACATCGAGGTATAAAT
AGATTAGTGACTATTACTCAAATGGACAACCTTGACAAGAGTATGTGTGTAATTAGAGAAACCTT
AATTAATGCTACATATAAGCATGATATGTTAAGAGG
Found at i:51687424 original size:27 final size:27
Alignment explanation
Indices: 51687372--51687433 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
51687362 CTTCATGGTG
*
51687372 TACTCTGAATGGATCACCTATGTGGCA
1 TACTCTGAATGGATCACCTATATGGCA
* *
51687399 TACTCTGAATGGATCGCCCT-TATGGCT
1 TACTCTGAATGGATC-ACCTATATGGCA
51687426 TACTCTGA
1 TACTCTGA
51687434 TTAGATTGCT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
27 28 0.90
28 3 0.10
ACGTcount: A:0.23, C:0.24, G:0.21, T:0.32
Consensus pattern (27 bp):
TACTCTGAATGGATCACCTATATGGCA
Found at i:51701869 original size:39 final size:40
Alignment explanation
Indices: 51701785--51701869 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
51701775 ACTTAATTCA
* * *
51701785 CCAGCATTAAGCCTGCGGGACTTTAAACCCGGATACAATC
1 CCAGCATGAAGCCAGCGGGACTCTAAACCCGGATACAATC
* *
51701825 CCAGCATGAAGCCAGCGGGTCTCT-AACCCGGATGCAATC
1 CCAGCATGAAGCCAGCGGGACTCTAAACCCGGATACAATC
*
51701864 TCAGCA
1 CCAGCA
51701870 CAATTCATTT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 19 0.49
40 20 0.51
ACGTcount: A:0.28, C:0.32, G:0.22, T:0.18
Consensus pattern (40 bp):
CCAGCATGAAGCCAGCGGGACTCTAAACCCGGATACAATC
Found at i:51702039 original size:47 final size:46
Alignment explanation
Indices: 51701940--51702095 Score: 199
Period size: 47 Copynumber: 3.3 Consensus size: 46
51701930 TGCACACTTT
* * *
51701940 TCACAATTGGTCATTCGGCCTTATCACA-TATTCACTTACACATAT-A
1 TCAC-ATTGGCCATTCGGCCTTATCACATTATACACTTTCACAT-TCA
** *
51701986 TCACATTAACCATTCGGCCTTATCACATGTATGCACTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACAT-TATACACTTTCACATTCA
*
51702033 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACAT-TATACACTTTCACATTCA
51702080 TCACATTGGCCATTCG
1 TCACATTGGCCATTCG
51702096 ATCTTAAGCT
Statistics
Matches: 97, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
45 20 0.21
46 5 0.05
47 72 0.74
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (46 bp):
TCACATTGGCCATTCGGCCTTATCACATTATACACTTTCACATTCA
Found at i:51713307 original size:55 final size:55
Alignment explanation
Indices: 51713231--51713345 Score: 151
Period size: 55 Copynumber: 2.1 Consensus size: 55
51713221 ATGTAGGCCC
* * *
51713231 ACGCCCGTGTTAATTTAACAGGTTCGACCAC-GGTTGCTTGGCACGGGCGTGTCGA
1 ACGCCCGTGCTAATTTAACAGGTTCGACCACAGGTT-CTAGACACGGGCGTGTCGA
* * * *
51713286 ACGCCCGTGCTGATTTGACAGGTTCGGCCACAGGTTCTAGACACGGGTGTGTCGA
1 ACGCCCGTGCTAATTTAACAGGTTCGACCACAGGTTCTAGACACGGGCGTGTCGA
51713341 ACGCC
1 ACGCC
51713346 TGTGTTGTTT
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
55 48 0.92
56 4 0.08
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (55 bp):
ACGCCCGTGCTAATTTAACAGGTTCGACCACAGGTTCTAGACACGGGCGTGTCGA
Found at i:51715004 original size:21 final size:21
Alignment explanation
Indices: 51714980--51715019 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
51714970 TTCTGCTCCG
*
51714980 CCTCCCTCGCTGCTGCCTCAC
1 CCTCCCGCGCTGCTGCCTCAC
51715001 CCTCCCGCGCTGCTGCCTC
1 CCTCCCGCGCTGCTGCCTC
51715020 CGCTCTAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.03, C:0.57, G:0.17, T:0.23
Consensus pattern (21 bp):
CCTCCCGCGCTGCTGCCTCAC
Done.