Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 18 of 310
Found at i:4666023 original size:48 final size:48
Alignment explanation
Indices: 4665949--4666257 Score: 321
Period size: 48 Copynumber: 6.5 Consensus size: 48
4665939 TTTCCCATTT
* *
4665949 CATTTAAATTTAA-TTTTTTATCATTTCATTTAAATTATCTTTTTTTA
1 CATTTAAATTTAATTTTTTTCTCATTTCATTTAAATTATCTTTTTTTC
* * *
4665996 CATTTAAAATTAATTTTTTTCTCATTTCGTTTAAATTATCTTTGTTTC
1 CATTTAAATTTAATTTTTTTCTCATTTCATTTAAATTATCTTTTTTTC
* *
4666044 CATTTTAATTTAATTTTTTTCTCATTTCATTTAAATTATC-TTGTTTC
1 CATTTAAATTTAATTTTTTTCTCATTTCATTTAAATTATCTTTTTTTC
* * *
4666091 CATTTTAATTTAATTTTTTTTCTCATTTCATTTTAATT-TAATTTTTTTC
1 CATTTAAATTTAA-TTTTTTTCTCATTTCATTTAAATTAT-CTTTTTTTC
* * * *
4666140 TCATTT-CATTTATATTTTTTTC-C-TTGTAAATTT-AATT-TTTTTCTTATTT
1 -CATTTAAATTTA-ATTTTTTTCTCATT-T-CATTTAAATTATCTTT-TT-TTC
* * *
4666189 CATTTAAATTTAATTTCTTCCTCATTTCATTTAAATTATCTTTCTTTC
1 CATTTAAATTTAATTTTTTTCTCATTTCATTTAAATTATCTTTTTTTC
*
4666237 CATTTTAATTT-ATTTTTTTCT
1 CATTTAAATTTAATTTTTTTCT
4666258 TTCTTTCCAT
Statistics
Matches: 222, Mismatches: 25, Indels: 30
0.80 0.09 0.11
Matches are distributed among these distances:
47 46 0.21
48 127 0.57
49 37 0.17
50 12 0.05
ACGTcount: A:0.24, C:0.12, G:0.01, T:0.63
Consensus pattern (48 bp):
CATTTAAATTTAATTTTTTTCTCATTTCATTTAAATTATCTTTTTTTC
Found at i:4666029 original size:21 final size:21
Alignment explanation
Indices: 4665956--4666222 Score: 110
Period size: 22 Copynumber: 11.3 Consensus size: 21
4665946 TTTCATTTAA
*
4665956 ATTTAA-TTTTTTATCATTTC
1 ATTTAATTTTTTTCTCATTTC
* *
4665976 ATTTAAATTATCTTTTTTTACATTTAA
1 ATTT-AA-T-T-TTTTTCT-CATTT-C
*
4666003 AATTAATTTTTTTCTCATTTC
1 ATTTAATTTTTTTCTCATTTC
* * *
4666024 GTTTAAATTATCTTTGTTTCCATTTTA
1 ATTT-AATT-T-TTT-TCT-CA-TTTC
4666051 ATTTAATTTTTTTCTCATTTC
1 ATTTAATTTTTTTCTCATTTC
*
4666072 ATTTAAATTATCTTGTT-TCCATTTTA
1 ATTT-AATT-T-TT-TTCT-CA-TTTC
4666098 ATTTAATTTTTTTTCTCATTTC
1 ATTTAA-TTTTTTTCTCATTTC
4666120 ATTTTAATTTAATTTTTTTCTCATTTC
1 ------ATTTAATTTTTTTCTCATTTC
*
4666147 ATTTATATTTTTTTC-C-TTGTAA
1 ATTTA-ATTTTTTTCTCATT-T-C
*
4666169 ATTTAATTTTTTTCTTATTTC
1 ATTTAATTTTTTTCTCATTTC
4666190 ATTTAAATTTAATTTCTTCCTCATTTC
1 ATTT-AA-TT--TTT-TT-CTCATTTC
4666217 ATTTAA
1 ATTTAA
4666223 ATTATCTTTC
Statistics
Matches: 191, Mismatches: 18, Indels: 70
0.68 0.06 0.25
Matches are distributed among these distances:
20 6 0.03
21 31 0.16
22 35 0.18
23 18 0.09
24 14 0.07
25 20 0.10
26 26 0.14
27 35 0.18
28 6 0.03
ACGTcount: A:0.24, C:0.12, G:0.01, T:0.63
Consensus pattern (21 bp):
ATTTAATTTTTTTCTCATTTC
Found at i:4666045 original size:118 final size:116
Alignment explanation
Indices: 4665896--4666257 Score: 317
Period size: 118 Copynumber: 3.0 Consensus size: 116
4665886 TTTCATTTCA
* * *
4665896 TTTC-CATTTCATCTAAATTATATTTTTTTCCATTTAAATTTTTTTTCCCATTTCATTTAAATTT
1 TTTCTCATTTCATTTAAATTATATTTCTTTCCATTTAAA-TTTTTTTCTCATTTCATTTAAATTT
4665960 AATTT-TTTATCATTTCATTTAAATTATCTTTTTTTACATTTAAAATTAATTTT
65 AATTTCTTT-TCATTTCATTTAAATTATCTTTTTTTACATTT-AAATTAATTTT
* * *
4666013 TTTCTCATTTCGTTTAAATTATCTTTGTTTCCATTTTAATTTAATTTTTTTCTCATTTCATTTAA
1 TTTCTCATTTCATTTAAATTATATTTCTTTCCA-TTT-A---AATTTTTTTCTCATTTCATTTAA
* * * * * *
4666078 A-TT-ATCTTGTTTCCATTTTAATTT-AATT-TTTTTTCTCATTTCATTTTAATTTAATTTT
61 ATTTAAT-TTCTTTTCA-TTTCATTTAAATTATCTTTT-T--TTACA-TTTAAATTAATTTT
* * ** *
4666136 TTTCTCATTTCATTTATATT-TTTTTCCTTGTAAATTT-AATTTTTTTCTTATTTCATTTAAATT
1 TTTCTCATTTCATTTAAATTATATTT-CTT-TCCATTTAAATTTTTTTCTCATTTCATTTAAATT
* * * * *
4666199 TAATTTCTTCCTCATTTCATTTAAATTATCTTTCTTTCCATTTTAATTTATTTT
64 TAATTTCTT-TTCATTTCATTTAAATTATCTTTTTTTACATTTAAATTAATTTT
4666253 TTTCT
1 TTTCT
4666258 TTCTTTCCAT
Statistics
Matches: 198, Mismatches: 27, Indels: 40
0.75 0.10 0.15
Matches are distributed among these distances:
117 20 0.10
118 51 0.26
119 16 0.08
120 17 0.09
121 15 0.08
122 35 0.18
123 39 0.20
124 5 0.03
ACGTcount: A:0.24, C:0.13, G:0.01, T:0.62
Consensus pattern (116 bp):
TTTCTCATTTCATTTAAATTATATTTCTTTCCATTTAAATTTTTTTCTCATTTCATTTAAATTTA
ATTTCTTTTCATTTCATTTAAATTATCTTTTTTTACATTTAAATTAATTTT
Found at i:4666123 original size:75 final size:74
Alignment explanation
Indices: 4666044--4666330 Score: 374
Period size: 75 Copynumber: 3.9 Consensus size: 74
4666034 TCTTTGTTTC
4666044 CATTTTAATTTAATTTTTTTCTCATTTCATTTAAATTATCTTGTTTCCATTTTAATTTAATTTTT
1 CATTTTAATTTAATTTTTTTCTCATTTCATTTAAATTATCTT-TTTCCATTTTAATTTAATTTTT
4666109 TTTCTCATTT
65 TTTCTCATTT
* *
4666119 CATTTTAATTTAATTTTTTTCTCATTTCATTT--A-TATTTTTTTCC-TTGTAAATTTAA-TTTT
1 CATTTTAATTTAATTTTTTTCTCATTTCATTTAAATTATCTTTTTCCATT-TTAATTTAATTTTT
*
4666179 TTTCTTATTT
65 TTTCTCATTT
* * *
4666189 CATTTAAATTTAATTTCTTCCTCATTTCATTTAAATTATCTTTCTTTCCATTTTAATTT-ATTTT
1 CATTTTAATTTAATTTTTTTCTCATTTCATTTAAATTATC-TT-TTTCCATTTTAATTTAATTTT
*
4666253 TTTCTTTC-TTT
64 TTT-TCTCATTT
4666264 CCATTTTAATTT-ATTTTTTTCTCATTTCATTTAAATTATCTTTCTTACCATTTTAATTTATATT
1 -CATTTTAATTTAATTTTTTTCTCATTTCATTTAAATTATCTTT-TT-CCATTTTAATTTA-ATT
4666328 TTT
62 TTT
4666331 CTGATATTAA
Statistics
Matches: 185, Mismatches: 13, Indels: 26
0.83 0.06 0.12
Matches are distributed among these distances:
70 44 0.24
71 13 0.07
72 6 0.03
73 5 0.03
74 7 0.04
75 90 0.49
76 14 0.08
77 6 0.03
ACGTcount: A:0.22, C:0.13, G:0.01, T:0.64
Consensus pattern (74 bp):
CATTTTAATTTAATTTTTTTCTCATTTCATTTAAATTATCTTTTTCCATTTTAATTTAATTTTTT
TTCTCATTT
Found at i:4666135 original size:27 final size:26
Alignment explanation
Indices: 4665935--4666300 Score: 186
Period size: 26 Copynumber: 14.9 Consensus size: 26
4665925 CCATTTAAAT
* *
4665935 TTTTTTTCCCATTTCATTTAAATTTA
1 TTTTTTTCTCATTTCATTTTAATTTA
* * *
4665961 ATTTTTTATCATTTCA-TTTAAATTA
1 TTTTTTTCTCATTTCATTTTAATTTA
* *
4665986 TCTTTTTT-T-A---CATTTAAAATTAA
1 T-TTTTTTCTCATTTCATTT-TAATTTA
* *
4666009 TTTTTTTCTCATTTC-GTTTAAATTA
1 TTTTTTTCTCATTTCATTTTAATTTA
*
4666034 TCTTTGTT-TC----CATTTTAATTTAA
1 T-TTTTTTCTCATTTCATTTTAATTT-A
*
4666057 TTTTTTTCTCATTTCA-TTTAAATTA
1 TTTTTTTCTCATTTCATTTTAATTTA
* * *
4666082 TCTTGTTTC-CATTTTAATTTAA--T-
1 T-TTTTTTCTCATTTCATTTTAATTTA
4666105 TTTTTTTCTCATTTCATTTTAATTTAA
1 TTTTTTTCTCATTTCATTTTAATTT-A
4666132 TTTTTTTCTCATTTCA-TTT-A--TA
1 TTTTTTTCTCATTTCATTTTAATTTA
* *
4666154 TTTTTTTC-C-TTGTAAATTTAA-TT-
1 TTTTTTTCTCATT-TCATTTTAATTTA
* *
4666177 T--TTTTCTTATTTCATTTAAATTTAA
1 TTTTTTTCTCATTTCATTTTAATTT-A
* * *
4666202 TTTCTTCCTCATTTCA-TTTAAATTA
1 TTTTTTTCTCATTTCATTTTAATTTA
* *
4666227 --TCTTTCT--TTCCATTTTAATTTA
1 TTTTTTTCTCATTTCATTTTAATTTA
4666249 TTTTTTTCTTTC-TTTCCATTTTAATTTA
1 TTTTTTTC--TCATTT-CATTTTAATTTA
*
4666277 TTTTTTTCTCATTTCATTTAAATT
1 TTTTTTTCTCATTTCATTTTAATT
4666301 ATCTTTCTTA
Statistics
Matches: 259, Mismatches: 39, Indels: 84
0.68 0.10 0.22
Matches are distributed among these distances:
20 2 0.01
21 15 0.06
22 52 0.20
23 35 0.14
24 9 0.03
25 27 0.10
26 65 0.25
27 34 0.13
28 20 0.08
ACGTcount: A:0.23, C:0.13, G:0.01, T:0.63
Consensus pattern (26 bp):
TTTTTTTCTCATTTCATTTTAATTTA
Found at i:4666157 original size:145 final size:144
Alignment explanation
Indices: 4665949--4666297 Score: 394
Period size: 145 Copynumber: 2.4 Consensus size: 144
4665939 TTTCCCATTT
* * * *
4665949 CATTTAAATTTAA--TTTTTTATCATTTCA-TTTAAATTATCTTTTTT-TACATTTAAAATTAAT
1 CATTTTAATTTAATTTTTTTTATCATTTCATTTTAATTTAT-TTTTTTCT-CATTT-CATTTAAT
** * * * *
4666010 TTTTTTCTCATT-T-CGTTTAAATTATCT-TTGTTTCCATTTTAATTTAATTTTTTTCTCATTTC
63 TTTTTTC-C-TTGTAAATTTAAATTATCTCTTATTT-CATTTAAATTTAATTTCTTCCTCATTTC
*
4666072 ATTTAAATTATC-TTGTTTC
125 ATTTAAATTATCTTTCTTTC
*
4666091 CATTTTAATTTAATTTTTTTTCTCATTTCATTTTAATTTAATTTTTTTCTCATTTCATTTATATT
1 CATTTTAATTTAATTTTTTTTATCATTTCATTTTAATTT-ATTTTTTTCTCATTTCATTTA-ATT
* * *
4666156 TTTTTCCTTGTAAATTTAATTTTTTTCTTATTTCATTTAAATTTAATTTCTTCCTCATTTCATTT
64 TTTTTCCTTGTAAATTTAAATTATCTCTTATTTCATTTAAATTTAATTTCTTCCTCATTTCATTT
4666221 AAATTATCTTTCTTTC
129 AAATTATCTTTCTTTC
*
4666237 CATTTTAATTT-ATTTTTTTCTTTC-TTTCCATTTTAATTTATTTTTTTCTCATTTCATTTAA
1 CATTTTAATTTAATTTTTTT-TATCATTT-CATTTTAATTTATTTTTTTCTCATTTCATTTAA
4666298 ATTATCTTTC
Statistics
Matches: 179, Mismatches: 16, Indels: 22
0.82 0.07 0.10
Matches are distributed among these distances:
142 12 0.07
143 2 0.01
144 21 0.12
145 105 0.59
146 39 0.22
ACGTcount: A:0.23, C:0.12, G:0.01, T:0.63
Consensus pattern (144 bp):
CATTTTAATTTAATTTTTTTTATCATTTCATTTTAATTTATTTTTTTCTCATTTCATTTAATTTT
TTTCCTTGTAAATTTAAATTATCTCTTATTTCATTTAAATTTAATTTCTTCCTCATTTCATTTAA
ATTATCTTTCTTTC
Found at i:4666199 original size:22 final size:21
Alignment explanation
Indices: 4666126--4666195 Score: 79
Period size: 21 Copynumber: 3.3 Consensus size: 21
4666116 TTTCATTTTA
*
4666126 ATTTAATTTTTTTCTCATTTC
1 ATTTAATTTTTTTCTTATTTC
* **
4666147 ATTTATATTTTTTTCCTT-GTAA
1 ATTTA-ATTTTTTT-CTTATTTC
4666169 ATTTAATTTTTTTCTTATTTC
1 ATTTAATTTTTTTCTTATTTC
4666190 ATTTAA
1 ATTTAA
4666196 ATTTAATTTC
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
20 3 0.08
21 20 0.51
22 14 0.36
23 2 0.05
ACGTcount: A:0.23, C:0.10, G:0.01, T:0.66
Consensus pattern (21 bp):
ATTTAATTTTTTTCTTATTTC
Found at i:4666259 original size:28 final size:28
Alignment explanation
Indices: 4666227--4666285 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
4666217 ATTTAAATTA
4666227 TCTTTCTTTCCATTTTAATTTATTTTTT
1 TCTTTCTTTCCATTTTAATTTATTTTTT
4666255 TCTTTCTTTCCATTTTAATTTATTTTTT
1 TCTTTCTTTCCATTTTAATTTATTTTTT
4666283 TCT
1 TCT
4666286 CATTTCATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.14, C:0.15, G:0.00, T:0.71
Consensus pattern (28 bp):
TCTTTCTTTCCATTTTAATTTATTTTTT
Found at i:4666319 original size:145 final size:145
Alignment explanation
Indices: 4666044--4666322 Score: 395
Period size: 145 Copynumber: 1.9 Consensus size: 145
4666034 TCTTTGTTTC
* * * *
4666044 CATTTTAATTTAATTTTTTTCTCATTTCATTTAAATTATCTTGTTTCCATTTTAATTTAATTTTT
1 CATTTAAATTTAATTTCTTCCTCATTTCATTTAAATTATCTTCTTTCCATTTTAATTTAATTTTT
* * **
4666109 TTTCTCATTTCATTTTAATTTAATTTTTTTCTCATTTCATTTATATTTTTTTCCTTGTAAATTTA
66 TTTCTCATTTCATTTTAATTTAATTTTTTTCTCATTTCATTTAAATTTCTTTCCTTACAAATTTA
4666174 ATTTTTTTCTTATTT
131 ATTTTTTTCTTATTT
4666189 CATTTAAATTTAATTTCTTCCTCATTTCATTTAAATTATCTTTCTTTCCATTTTAATTT-ATTTT
1 CATTTAAATTTAATTTCTTCCTCATTTCATTTAAATTATC-TTCTTTCCATTTTAATTTAATTTT
* * *
4666253 TTTCTTTC-TTTCCATTTTAATTT-ATTTTTTTCTCATTTCATTTAAATTATCTTT-CTTACCAT
65 TTT-TCTCATTT-CATTTTAATTTAATTTTTTTCTCATTTCATTTAAATT-TCTTTCCTTACAAA
4666315 TTTAATTT
127 TTTAATTT
4666323 ATATTTTTCT
Statistics
Matches: 119, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
145 84 0.71
146 35 0.29
ACGTcount: A:0.22, C:0.13, G:0.01, T:0.64
Consensus pattern (145 bp):
CATTTAAATTTAATTTCTTCCTCATTTCATTTAAATTATCTTCTTTCCATTTTAATTTAATTTTT
TTTCTCATTTCATTTTAATTTAATTTTTTTCTCATTTCATTTAAATTTCTTTCCTTACAAATTTA
ATTTTTTTCTTATTT
Found at i:4669326 original size:52 final size:52
Alignment explanation
Indices: 4669255--4669411 Score: 209
Period size: 46 Copynumber: 3.1 Consensus size: 52
4669245 ATCAAGTAAT
* *
4669255 AAAGTGATAAGTGGTAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTGA
* *
4669307 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC------
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTGA
*
4669353 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGTGA
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGAC-AAGTGA
*
4669406 TAAGTG
1 AAAGTG
4669412 GCTACACTTA
Statistics
Matches: 90, Mismatches: 8, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
46 43 0.48
52 42 0.47
53 5 0.06
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.27
Consensus pattern (52 bp):
AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTGA
Found at i:4669447 original size:36 final size:37
Alignment explanation
Indices: 4669375--4669447 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
4669365 GATAGCTTTA
4669375 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
4669412 GCTACACTTATCTGATCAAGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
4669448 ATCATACGTA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
36 12 0.34
37 23 0.66
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:4671103 original size:394 final size:394
Alignment explanation
Indices: 4670373--4671161 Score: 1479
Period size: 394 Copynumber: 2.0 Consensus size: 394
4670363 GTGCCAGATG
4670373 CAATAAGCAGACCTCCACGGAACCCCCGATCACCTTATCACCGCAAGTAATCCTTTCGATCTATC
1 CAATAAGCAGACCTCCACGGAACCCCCGATCACCTTATCACCGCAAGTAATCCTTTCGATCTATC
4670438 TGATATAAGGCAAATGTTGTTGTCCTTGACAACGTGCCTCCGCAGATTTTTGAGAAAAAAATTCT
66 TGATATAAGGCAAATGTTGTTGTCCTTGACAACGTGCCTCCGCAGATTTTTGAGAAAAAAATTCT
* *
4670503 TAAGACTTGAAGCATTCACGTTCCATGATGGCGAAAGCGATCAGAAGTACATTTTGATTGTCGTC
131 TAAGACTCGAAGCATTCACGTTCCATGATGGCGAAAGCGATCAGAAGTACATTTCGATTGTCGTC
*
4670568 TTGTGCAATAGCAATTAAGAATATTTGCCTTTATTTGCTGTATAACCATGTCCCGTCTATCTGCA
196 TTGTGCAATAGCAATTAAGAATATTTGCCTGTATTTGCTGTATAACCATGTCCCGTCTATCTGCA
**
4670633 CCATTGGCTTGCAGTTAGGGAAGGCCCTAACACACAACTTGAACGTCTAAAACAATCAGTGAAAA
261 CCATTGGCTTGCAGCCAGGGAAGGCCCTAACACACAACTTGAACGTCTAAAACAATCAGTGAAAA
* *
4670698 ACTCATTTCCCCGATTGTATCTCCTTGTTCAGGCCTTTATATTATAGTGTTTGCAAATTAGTCAC
326 ACTCATTTCCCCGATTGTATCTCCCTGTTCAGGCCTTTATATGATAGTGTTTGCAAATTAGTCAC
4670763 TATC
391 TATC
*
4670767 CAATAAGCAGACCTCCATGGAACCCCCGATCACCTTATCACCGCAAGTAATCCTTTCGATCTATC
1 CAATAAGCAGACCTCCACGGAACCCCCGATCACCTTATCACCGCAAGTAATCCTTTCGATCTATC
*
4670832 TGATATAAGGCAAATGTTGTTTTCCTTGACAACGTGCCTCCGCAGATTTTTGAGAAAAAAATTCT
66 TGATATAAGGCAAATGTTGTTGTCCTTGACAACGTGCCTCCGCAGATTTTTGAGAAAAAAATTCT
4670897 TAAGACTCGAAGCATTCACGTTCCATGATGGCGAAAGCGATCAGAAGTACATTTCGATTGTCGTC
131 TAAGACTCGAAGCATTCACGTTCCATGATGGCGAAAGCGATCAGAAGTACATTTCGATTGTCGTC
4670962 TTGTGCAATAGCAATTAAGAATATTTGCCTGTATTTGCTGTATAACCATGTCCCGTCTATCTGCA
196 TTGTGCAATAGCAATTAAGAATATTTGCCTGTATTTGCTGTATAACCATGTCCCGTCTATCTGCA
*
4671027 CCATTGGCTTGCAGCCAGGGAAGGCCCTAACACACAACTTGAACGTCTAAAACAATCGGTGAAAA
261 CCATTGGCTTGCAGCCAGGGAAGGCCCTAACACACAACTTGAACGTCTAAAACAATCAGTGAAAA
*
4671092 ACTCGTTTCCCCGATTGTATCTCCCTGTTCAGGCCTTTATATGATAGTGTTTGCAAATTAGTCAC
326 ACTCATTTCCCCGATTGTATCTCCCTGTTCAGGCCTTTATATGATAGTGTTTGCAAATTAGTCAC
4671157 TATC
391 TATC
4671161 C
1 C
4671162 CAGCACATAC
Statistics
Matches: 384, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
394 384 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.30
Consensus pattern (394 bp):
CAATAAGCAGACCTCCACGGAACCCCCGATCACCTTATCACCGCAAGTAATCCTTTCGATCTATC
TGATATAAGGCAAATGTTGTTGTCCTTGACAACGTGCCTCCGCAGATTTTTGAGAAAAAAATTCT
TAAGACTCGAAGCATTCACGTTCCATGATGGCGAAAGCGATCAGAAGTACATTTCGATTGTCGTC
TTGTGCAATAGCAATTAAGAATATTTGCCTGTATTTGCTGTATAACCATGTCCCGTCTATCTGCA
CCATTGGCTTGCAGCCAGGGAAGGCCCTAACACACAACTTGAACGTCTAAAACAATCAGTGAAAA
ACTCATTTCCCCGATTGTATCTCCCTGTTCAGGCCTTTATATGATAGTGTTTGCAAATTAGTCAC
TATC
Found at i:4673273 original size:94 final size:94
Alignment explanation
Indices: 4673112--4673395 Score: 523
Period size: 94 Copynumber: 3.0 Consensus size: 94
4673102 AAAAATACTA
*
4673112 TTAATTTTAGATTATTTTGATGATTGTTTTCGAACCTGGGTTATTTTTATAAATATCAAAACTTT
1 TTAATTTCAGATTATTTTGATGATTGTTTTCGAACCTGGGTTATTTTTATAAATATCAAAACTTT
4673177 TTGAGTTAGATTGATAAAATAGCCATGGT
66 TTGAGTTAGATTGATAAAATAGCCATGGT
4673206 TTAATTTCAGATTATTTTGATGATTGTTTTCGAACCTGGGTTATTTTTATAAATATCAAAACTTT
1 TTAATTTCAGATTATTTTGATGATTGTTTTCGAACCTGGGTTATTTTTATAAATATCAAAACTTT
4673271 TTGAGTTAGATTGATAAAATAGCCATGGT
66 TTGAGTTAGATTGATAAAATAGCCATGGT
* * *
4673300 TTAATTTCAGATTATTTTGATGATTGTTTTCGAACCTGAGTTATTTTTAAAAATATCAAAATTTT
1 TTAATTTCAGATTATTTTGATGATTGTTTTCGAACCTGGGTTATTTTTATAAATATCAAAACTTT
*
4673365 TTGAGTTAGATTGATAAAATAGCTATGGT
66 TTGAGTTAGATTGATAAAATAGCCATGGT
4673394 TT
1 TT
4673396 TCCTTTGACT
Statistics
Matches: 185, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 185 1.00
ACGTcount: A:0.31, C:0.07, G:0.15, T:0.46
Consensus pattern (94 bp):
TTAATTTCAGATTATTTTGATGATTGTTTTCGAACCTGGGTTATTTTTATAAATATCAAAACTTT
TTGAGTTAGATTGATAAAATAGCCATGGT
Found at i:4677535 original size:127 final size:127
Alignment explanation
Indices: 4677389--4677644 Score: 458
Period size: 127 Copynumber: 2.0 Consensus size: 127
4677379 TAACGAATGT
* *
4677389 TAATGAAAACAATAAAAAATTGACATGTGGCATGCTACATGGTGACACATCAACATATATTTTTA
1 TAATGAAAACAATAAAAAATTGACATGTGACATGCCACATGGTGACACATCAACATATATTTTTA
4677454 AAAAATAAAATAAATCCTAAAAGTTAATATATATTTTTAAAAAATAAACGTTCAAATGAATC
66 AAAAATAAAATAAATCCTAAAAGTTAATATATATTTTTAAAAAATAAACGTTCAAATGAATC
4677516 TAATGAAAACAATAAAAAATTGACATGTGACATGCCACATGGTGACACATCAACATATATTTTTA
1 TAATGAAAACAATAAAAAATTGACATGTGACATGCCACATGGTGACACATCAACATATATTTTTA
* * * *
4677581 AAAAATAAACTAAATCCTAAAAGTTAATATATTTTTTTAAAAAATAAACTTTCAAATGGATC
66 AAAAATAAAATAAATCCTAAAAGTTAATATATATTTTTAAAAAATAAACGTTCAAATGAATC
4677643 TA
1 TA
4677645 GACAAATAAA
Statistics
Matches: 123, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
127 123 1.00
ACGTcount: A:0.49, C:0.12, G:0.09, T:0.30
Consensus pattern (127 bp):
TAATGAAAACAATAAAAAATTGACATGTGACATGCCACATGGTGACACATCAACATATATTTTTA
AAAAATAAAATAAATCCTAAAAGTTAATATATATTTTTAAAAAATAAACGTTCAAATGAATC
Found at i:4677764 original size:21 final size:20
Alignment explanation
Indices: 4677725--4677779 Score: 56
Period size: 21 Copynumber: 2.7 Consensus size: 20
4677715 AATATTATCT
* *
4677725 AAAAATTATAAAAAAAATTT
1 AAAATTTATAAAAAAAATTC
**
4677745 AAAATTTTATAAAAGTAATTC
1 AAAA-TTTATAAAAAAAATTC
*
4677766 AAAATATATAAAAA
1 AAAATTTATAAAAA
4677780 TTATAACAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (20 bp):
AAAATTTATAAAAAAAATTC
Found at i:4677800 original size:8 final size:8
Alignment explanation
Indices: 4677766--4677834 Score: 61
Period size: 9 Copynumber: 8.2 Consensus size: 8
4677756 AAAGTAATTC
4677766 AAAATATAT
1 AAAA-ATAT
4677775 AAAAATTAT
1 AAAAA-TAT
4677784 AACAAATAT
1 AA-AAATAT
4677793 AAAAATAT
1 AAAAATAT
* *
4677801 AAGAACAT
1 AAAAATAT
4677809 ACAAAATCAT
1 A-AAAAT-AT
4677819 AAAAAT-T
1 AAAAATAT
4677826 -AAAATAT
1 AAAAATAT
4677833 AA
1 AA
4677835 CTTTAAATTT
Statistics
Matches: 50, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
6 5 0.10
7 2 0.04
8 15 0.30
9 22 0.44
10 6 0.12
ACGTcount: A:0.68, C:0.06, G:0.01, T:0.25
Consensus pattern (8 bp):
AAAAATAT
Found at i:4678931 original size:21 final size:20
Alignment explanation
Indices: 4678867--4678931 Score: 53
Period size: 21 Copynumber: 3.1 Consensus size: 20
4678857 TCCAATTTTC
* *
4678867 TTTAAAAACATTTTAAACA-C
1 TTTAAAAA-ATTTGAAACATG
*
4678887 TTTAAAACAATTTGGAA-ATGG
1 TTTAAAA-AATTTGAAACAT-G
4678908 TTTAAAAATATTTGAAACATG
1 TTTAAAAA-ATTTGAAACATG
4678929 TTT
1 TTT
4678932 TTGAGTATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
19 1 0.03
20 14 0.39
21 19 0.53
22 2 0.06
ACGTcount: A:0.45, C:0.08, G:0.09, T:0.38
Consensus pattern (20 bp):
TTTAAAAAATTTGAAACATG
Found at i:4686929 original size:51 final size:51
Alignment explanation
Indices: 4686874--4686975 Score: 204
Period size: 51 Copynumber: 2.0 Consensus size: 51
4686864 TGCTTTTTTC
4686874 TATTTTTTCCTTTCATTTCATTTTACTTGGGTAATTTTTAGTTAAAACAAA
1 TATTTTTTCCTTTCATTTCATTTTACTTGGGTAATTTTTAGTTAAAACAAA
4686925 TATTTTTTCCTTTCATTTCATTTTACTTGGGTAATTTTTAGTTAAAACAAA
1 TATTTTTTCCTTTCATTTCATTTTACTTGGGTAATTTTTAGTTAAAACAAA
4686976 GTAGTTAGTC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.27, C:0.12, G:0.08, T:0.53
Consensus pattern (51 bp):
TATTTTTTCCTTTCATTTCATTTTACTTGGGTAATTTTTAGTTAAAACAAA
Found at i:4689878 original size:46 final size:46
Alignment explanation
Indices: 4689826--4690912 Score: 1897
Period size: 46 Copynumber: 23.6 Consensus size: 46
4689816 TCCCATAGTG
* * * *
4689826 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCTATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCATATCATGTTGCCATGGTA
* ** * *
4689872 TCTTTCAACCATGTTCTTATTCTTTTCATGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
** * * * *
4689918 TCTTTCAACCATGGTCTTATTCATTTTATGTCACGCTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
** * *
4689964 TCTTTCAACCATGGTCTTATTCATTTCCTGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
* ** * **
4690010 TCTCTCAACCATGGTCTTATTCATTTCATGTCACATTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
*
4690056 TCTTTCAACTATGGTCTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
4690102 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
4690148 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
4690194 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
4690240 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
4690286 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
4690332 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
4690378 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
4690424 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
4690470 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
4690516 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
4690562 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
4690608 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
4690654 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
4690700 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
4690746 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
4690792 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
*
4690838 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGTCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
**
4690884 TCTTTCAACCATGGTCTGGCACATTTCAT
1 TCTTTCAACCATGGTCTTACACATTTCAT
4690913 TTTAGAGAGC
Statistics
Matches: 1011, Mismatches: 29, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
45 4 0.00
46 1007 1.00
ACGTcount: A:0.23, C:0.24, G:0.13, T:0.40
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
Found at i:4689884 original size:24 final size:24
Alignment explanation
Indices: 4689857--4689930 Score: 66
Period size: 24 Copynumber: 3.2 Consensus size: 24
4689847 CATTTTCTGT
4689857 CATGTTGCTATGGTATCTTTCAAC
1 CATGTTGCTATGGTATCTTTCAAC
* **
4689881 CATGTT-CT-T-AT-TCTTTTCATGT
1 CATGTTGCTATGGTATC-TTTCA-AC
*
4689903 CATGTTGCCATGGTATCTTTCAAC
1 CATGTTGCTATGGTATCTTTCAAC
4689927 CATG
1 CATG
4689931 GTCTTATTCA
Statistics
Matches: 37, Mismatches: 7, Indels: 12
0.66 0.12 0.21
Matches are distributed among these distances:
20 2 0.05
21 6 0.16
22 7 0.19
23 3 0.08
24 11 0.30
25 6 0.16
26 2 0.05
ACGTcount: A:0.19, C:0.22, G:0.15, T:0.45
Consensus pattern (24 bp):
CATGTTGCTATGGTATCTTTCAAC
Found at i:4690910 original size:21 final size:21
Alignment explanation
Indices: 4690840--4690911 Score: 56
Period size: 21 Copynumber: 3.2 Consensus size: 21
4690830 CCATGGTATC
**
4690840 TTTCAACCATGGTCTTACACA
1 TTTCAACCATGGTCTGGCACA
* *
4690861 TTTCATATCATGTTGTCATGGTATC-
1 TTTCA-ACCATG--GTC-TGGCA-CA
4690886 TTTCAACCATGGTCTGGCACA
1 TTTCAACCATGGTCTGGCACA
4690907 TTTCA
1 TTTCA
4690912 TTTTAGAGAG
Statistics
Matches: 39, Mismatches: 6, Indels: 12
0.68 0.11 0.21
Matches are distributed among these distances:
20 1 0.03
21 14 0.36
22 8 0.21
24 8 0.21
25 7 0.18
26 1 0.03
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.39
Consensus pattern (21 bp):
TTTCAACCATGGTCTGGCACA
Found at i:4692771 original size:8 final size:8
Alignment explanation
Indices: 4692760--4692790 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
4692750 CTTTACATAC
4692760 TAATAAAA
1 TAATAAAA
4692768 TAATAAAA
1 TAATAAAA
4692776 TAATAAAAA
1 TAAT-AAAA
4692785 TAATAA
1 TAATAA
4692791 TATATCTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 14 0.64
9 8 0.36
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (8 bp):
TAATAAAA
Found at i:4692805 original size:30 final size:30
Alignment explanation
Indices: 4692771--4692848 Score: 88
Period size: 30 Copynumber: 2.6 Consensus size: 30
4692761 AATAAAATAA
*
4692771 TAAAATAATA-AAAATAATAATATATCTTAT
1 TAAAATAATATAAAATAAT-ATATATCTAAT
* *
4692801 TAAAATATTAATAAAATAATATTTATCTAAT
1 TAAAATAAT-ATAAAATAATATATATCTAAT
4692832 T-AAATAATTATAAAATA
1 TAAAATAA-TATAAAATA
4692849 TAAAAATATC
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
30 21 0.51
31 12 0.29
32 8 0.20
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (30 bp):
TAAAATAATATAAAATAATATATATCTAAT
Found at i:4692834 original size:31 final size:32
Alignment explanation
Indices: 4692776--4692848 Score: 89
Period size: 31 Copynumber: 2.3 Consensus size: 32
4692766 AATAATAAAA
*
4692776 TAATAAAAATAATAATATATCTTATTAAA-ATAT
1 TAAT-AAAATAATAATATATCTAATTAAATA-AT
*
4692809 TAATAAAATAAT-ATTTATCTAATTAAATAAT
1 TAATAAAATAATAATATATCTAATTAAATAAT
4692840 T-ATAAAATA
1 TAATAAAATA
4692849 TAAAAATATC
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
30 8 0.22
31 16 0.43
32 9 0.24
33 4 0.11
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.40
Consensus pattern (32 bp):
TAATAAAATAATAATATATCTAATTAAATAAT
Found at i:4694490 original size:25 final size:25
Alignment explanation
Indices: 4694452--4694499 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
4694442 GAATGTGTTG
*
4694452 AATGTGCTAATAATCAGAGAGCACT
1 AATGTACTAATAATCAGAGAGCACT
*
4694477 AATGTACTAGTAATCAGAGAGCA
1 AATGTACTAATAATCAGAGAGCA
4694500 TACTGAGGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.42, C:0.15, G:0.21, T:0.23
Consensus pattern (25 bp):
AATGTACTAATAATCAGAGAGCACT
Found at i:4696028 original size:138 final size:138
Alignment explanation
Indices: 4695780--4696038 Score: 412
Period size: 138 Copynumber: 1.9 Consensus size: 138
4695770 TGCCATAGTG
* * * * *
4695780 TCTTTCAACTATGGTCTTACTCATTTTCTATCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
1 TCTTTCAACTATGGTCTTACTCATTTCCCATCATCTTGCCATGGTATCTCTCAACCATGGTCTCA
**
4695845 TTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGATCTTATTCATTTCATGTCACGCTG
66 TTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGATCTTACACATTTCATGTCACGCTG
4695910 TCATGGTA
131 TCATGGTA
* *
4695918 TCTTTCAAAC-ATGGTCTTATTCATTTCCCGTCATCTTGCCATGGTATCTCTCAACCATGGTCTC
1 TCTTTC-AACTATGGTCTTACTCATTTCCCATCATCTTGCCATGGTATCTCTCAACCATGGTCTC
*
4695982 ATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
65 ATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGATCTTACACATTTCAT
4696039 ATCAGAGAGC
Statistics
Matches: 110, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
138 107 0.97
139 3 0.03
ACGTcount: A:0.20, C:0.25, G:0.13, T:0.42
Consensus pattern (138 bp):
TCTTTCAACTATGGTCTTACTCATTTCCCATCATCTTGCCATGGTATCTCTCAACCATGGTCTCA
TTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGATCTTACACATTTCATGTCACGCTG
TCATGGTA
Found at i:4696037 original size:46 final size:46
Alignment explanation
Indices: 4695770--4696038 Score: 344
Period size: 46 Copynumber: 5.8 Consensus size: 46
4695760 TTTGACATGA
* * * * * *
4695770 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGTCACGT
*
4695816 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
* *
4695862 TGCCATGGTATCTTTCAACCATGATCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
* * **
4695908 TGTCATGGTATCTTTCAAACATGGTCTTATTCATTTCCCGTCATC-T
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCA-CGT
* * *
4695954 TGCCATGGTATCTCTCAACCATGGTCTCATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
**
4696000 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCAT
4696039 ATCAGAGAGC
Statistics
Matches: 192, Mismatches: 28, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
45 5 0.03
46 186 0.97
47 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.14, T:0.42
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
Found at i:4697282 original size:8 final size:8
Alignment explanation
Indices: 4697271--4697300 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
4697261 CTTTACATAC
4697271 TAATAAAA
1 TAATAAAA
4697279 TAATAAAA
1 TAATAAAA
4697287 TAATAAAAA
1 TAAT-AAAA
4697296 TAATA
1 TAATA
4697301 TATCTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (8 bp):
TAATAAAA
Found at i:4697313 original size:27 final size:29
Alignment explanation
Indices: 4697282--4697356 Score: 84
Period size: 30 Copynumber: 2.6 Consensus size: 29
4697272 AATAAAATAA
*
4697282 TAAAATAATA-AAAATAATA-TATCTTAT
1 TAAAATAATATAAAATAATATTATCTAAT
*
4697309 TAAAATATTAATAAAATAATATTTATCTAAT
1 TAAAATAAT-ATAAAATAATA-TTATCTAAT
4697340 T-AAATAATTATAAAATA
1 TAAAATAA-TATAAAATA
4697357 TAAAAATATC
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
27 8 0.20
28 1 0.03
29 9 0.22
30 13 0.32
31 9 0.22
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.39
Consensus pattern (29 bp):
TAAAATAATATAAAATAATATTATCTAAT
Found at i:4697342 original size:31 final size:29
Alignment explanation
Indices: 4697287--4697356 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 29
4697277 AATAATAAAA
*
4697287 TAATAAAAATAATATATCTTATTAAA-ATAT
1 TAAT-AAAATAATATATCTAATTAAATA-AT
4697317 TAATAAAATAATATTTATCTAATTAAATAAT
1 TAATAAAATAATA--TATCTAATTAAATAAT
4697348 T-ATAAAATA
1 TAATAAAATA
4697357 TAAAAATATC
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
29 9 0.25
30 12 0.33
31 14 0.39
32 1 0.03
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (29 bp):
TAATAAAATAATATATCTAATTAAATAAT
Found at i:4698805 original size:26 final size:23
Alignment explanation
Indices: 4698776--4698845 Score: 68
Period size: 26 Copynumber: 2.9 Consensus size: 23
4698766 GAGTCTATAA
* *
4698776 CAGGAAGTTCACAAAGATCTTTTAAT
1 CAGGAAGTTCACAAAGAGC--CT-AT
* *
4698802 CAGGAAGCTCACGAAGAGCCTAT
1 CAGGAAGTTCACAAAGAGCCTAT
4698825 CAGGAATGTTCACAAAGAGCC
1 CAGGAA-GTTCACAAAGAGCC
4698846 ATGTAACAAG
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
23 8 0.22
24 13 0.35
26 16 0.43
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.20
Consensus pattern (23 bp):
CAGGAAGTTCACAAAGAGCCTAT
Found at i:4698830 original size:23 final size:24
Alignment explanation
Indices: 4698800--4698845 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
4698790 AGATCTTTTA
*
4698800 ATCAGGAA-GCTCACGAAGAGCCT
1 ATCAGGAATGCTCACAAAGAGCCT
*
4698823 ATCAGGAATGTTCACAAAGAGCC
1 ATCAGGAATGCTCACAAAGAGCC
4698846 ATGTAACAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (24 bp):
ATCAGGAATGCTCACAAAGAGCCT
Found at i:4699579 original size:24 final size:24
Alignment explanation
Indices: 4699546--4699619 Score: 121
Period size: 24 Copynumber: 3.1 Consensus size: 24
4699536 AAGTCTATCT
*
4699546 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
4699570 GGAGAGGATTTAGGAGCTGATCAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
4699594 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
4699618 GG
1 GG
4699620 TGAACTATGT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.31, C:0.05, G:0.42, T:0.22
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:4701143 original size:28 final size:26
Alignment explanation
Indices: 4701050--4701161 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
4701040 AGGAAGCGTC
* * *
4701050 CTGGTGGCTATGCCATAATTATCTGAT
1 CTGGTGGCTCTGCCA-CATTATCTGTT
* *
4701077 CTGATGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
4701104 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
4701132 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
4701158 CTGG
1 CTGG
4701162 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 7 0.10
27 49 0.67
28 17 0.23
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:4701156 original size:54 final size:54
Alignment explanation
Indices: 4701050--4701161 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
4701040 AGGAAGCGTC
* * *
4701050 CTGGTGGCTATGCCATAATTATCTGATCTGATGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGATGACTCTGCCACATATATCTGTT
* * * *
4701104 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGATGACTCTGCCACATATATCTGTT
4701158 CTGG
1 CTGG
4701162 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGATGACTCTGCCACATATATCTGTT
Found at i:4705185 original size:24 final size:23
Alignment explanation
Indices: 4705158--4705206 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
4705148 TGATAACAAT
*
4705158 ATACAGAAAATTCTACCAGTAAAA
1 ATACAGAAAA-GCTACCAGTAAAA
* *
4705182 ATACAGACAAGCTACTAGTAAAA
1 ATACAGAAAAGCTACCAGTAAAA
4705205 AT
1 AT
4705207 GCGATAAATC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 13 0.59
24 9 0.41
ACGTcount: A:0.53, C:0.16, G:0.10, T:0.20
Consensus pattern (23 bp):
ATACAGAAAAGCTACCAGTAAAA
Found at i:4707627 original size:17 final size:16
Alignment explanation
Indices: 4707605--4707637 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
4707595 CTTGGGATTT
4707605 CAGCAGGAAATGCGAA
1 CAGCAGGAAATGCGAA
4707621 NCAGCAGGAAATGCGAA
1 -CAGCAGGAAATGCGAA
4707638 GGTTACTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.18, G:0.30, T:0.06
Consensus pattern (16 bp):
CAGCAGGAAATGCGAA
Found at i:4719101 original size:18 final size:19
Alignment explanation
Indices: 4719060--4719103 Score: 58
Period size: 17 Copynumber: 2.4 Consensus size: 19
4719050 TATTTAGTAC
4719060 ATACTAGAAACTATAGTTA
1 ATACTAGAAACTATAGTTA
4719079 A-ACTA-AAACTATAG-TA
1 ATACTAGAAACTATAGTTA
4719095 ACTACTAGA
1 A-TACTAGA
4719104 GACTGCGACA
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
16 3 0.14
17 9 0.41
18 8 0.36
19 2 0.09
ACGTcount: A:0.50, C:0.14, G:0.09, T:0.27
Consensus pattern (19 bp):
ATACTAGAAACTATAGTTA
Found at i:4720276 original size:15 final size:15
Alignment explanation
Indices: 4720258--4720289 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
4720248 CATTTCACTA
*
4720258 TTATGTATTTTGTAT
1 TTATGTATTTTATAT
4720273 TTATGTATTTTATAT
1 TTATGTATTTTATAT
4720288 TT
1 TT
4720290 TTCATACATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.22, C:0.00, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTATTTTATAT
Found at i:4722002 original size:25 final size:25
Alignment explanation
Indices: 4721955--4722008 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
4721945 GGACTCACCG
*
4721955 CAGCTCGTATGAGCTTACCGATACT
1 CAGCTCGTATGAGCTTAACGATACT
* *
4721980 CAGCTCGTATGAGCTTAATGATATT
1 CAGCTCGTATGAGCTTAACGATACT
4722005 CAGC
1 CAGC
4722009 GCAAAGGAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (25 bp):
CAGCTCGTATGAGCTTAACGATACT
Found at i:4723061 original size:15 final size:14
Alignment explanation
Indices: 4723043--4723077 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
4723033 TTAGCCGTGT
4723043 GTGACACACGACCAG
1 GTGACACA-GACCAG
*
4723058 GTGATACAGACCAG
1 GTGACACAGACCAG
4723072 GTGACA
1 GTGACA
4723078 TGACCGTGCG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.34, C:0.26, G:0.29, T:0.11
Consensus pattern (14 bp):
GTGACACAGACCAG
Found at i:4723207 original size:12 final size:12
Alignment explanation
Indices: 4723190--4723220 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
4723180 CCCTCATTTT
4723190 CACACGGCCTAG
1 CACACGGCCTAG
*
4723202 CACACGGCCTGG
1 CACACGGCCTAG
4723214 CACACGG
1 CACACGG
4723221 GCGTGTGGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.23, C:0.42, G:0.29, T:0.06
Consensus pattern (12 bp):
CACACGGCCTAG
Found at i:4724985 original size:90 final size:87
Alignment explanation
Indices: 4724818--4724986 Score: 239
Period size: 89 Copynumber: 1.9 Consensus size: 87
4724808 CCAAAATTAA
* * * **
4724818 TATTATTTTAATAGTTTAATATTAAATTAAATTTAATATTTATGTTAATTGTATTTTATTAATTT
1 TATTATTTTAATAGTTTAACATTAAATTAAATCTAATATTTATCTTAATAATATTTTATTAATTT
*
4724883 AATATTACAGTGATAAACATTC
66 AATATTAAAGTGATAAACATTC
* *
4724905 TATTATTTTAATAAGATTTAACATTAAATTTAATCTAATATTTATCTTGATAAATATTTTATTAA
1 TATTATTTTAAT-AG-TTTAACATTAAATTAAATCTAATATTTATCTTAAT-AATATTTTATTAA
4724970 TTTAATATTAAAGTGAT
63 TTTAATATTAAAGTGAT
4724987 TAAGTTTGAT
Statistics
Matches: 71, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
87 12 0.17
88 2 0.03
89 30 0.42
90 27 0.38
ACGTcount: A:0.40, C:0.04, G:0.05, T:0.51
Consensus pattern (87 bp):
TATTATTTTAATAGTTTAACATTAAATTAAATCTAATATTTATCTTAATAATATTTTATTAATTT
AATATTAAAGTGATAAACATTC
Found at i:4730316 original size:12 final size:12
Alignment explanation
Indices: 4730299--4730334 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
4730289 ATTCATTTGA
4730299 CATTCATGCATT
1 CATTCATGCATT
4730311 CATTCATGCATT
1 CATTCATGCATT
*
4730323 CATTCATACATT
1 CATTCATGCATT
4730335 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:4738187 original size:73 final size:72
Alignment explanation
Indices: 4738087--4738468 Score: 331
Period size: 72 Copynumber: 5.0 Consensus size: 72
4738077 TGATTTTCAA
* * *
4738087 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTGGTTTTAATTTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTTTAATTTC
4738152 TGTTCATC
65 TGTTCATC
* * * *
4738160 AAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCT-TGGCTCACACGCTGAGGTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTT-AAT
4738224 TTCTGGTTTTCAATTTC
62 TTCT-G--TTC-A--TC
* *
4738241 TGTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACGCTGAGGTAATTTC
1 ------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTT-
* **
4738306 T-ATTTCTATTTGTC
58 TAATTTCTGTTCATC
* *
4738320 AAAAATCAACT-ATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTTTAATTTC
* **
4738384 TATTTGTC
65 TGTTCATC
* * *
4738392 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTCTTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTT-AAT
*
4738456 TTCTGTTCTTC
62 TTCTGTTCATC
4738467 AA
1 AA
4738469 TTTCTGTTCG
Statistics
Matches: 258, Mismatches: 26, Indels: 48
0.78 0.08 0.14
Matches are distributed among these distances:
72 71 0.28
73 70 0.27
74 7 0.03
75 41 0.16
76 1 0.00
78 3 0.01
79 3 0.01
81 2 0.01
82 2 0.01
85 18 0.07
86 4 0.02
87 34 0.13
88 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (72 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTAATTTCT
GTTCATC
Found at i:4738247 original size:14 final size:14
Alignment explanation
Indices: 4738216--4738246 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
4738206 CGCTGAGGTA
4738216 TTTTCAATTTCTGG
1 TTTTCAATTTCTGG
4738230 TTTTCAATTTCT-G
1 TTTTCAATTTCTGG
4738243 TTTT
1 TTTT
4738247 TAAAATCAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.29
14 12 0.71
ACGTcount: A:0.13, C:0.13, G:0.10, T:0.65
Consensus pattern (14 bp):
TTTTCAATTTCTGG
Found at i:4738469 original size:14 final size:14
Alignment explanation
Indices: 4738450--4738477 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
4738440 CTGAGGTCTT
4738450 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
4738464 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
4738478 GTAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:4738590 original size:74 final size:73
Alignment explanation
Indices: 4738483--4738928 Score: 619
Period size: 74 Copynumber: 6.0 Consensus size: 73
4738473 TGTTCGTAAA
*
4738483 AAAAATCAACTAATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTATTTTTAAATTT
4738548 CTGTTTTTC
65 CTGTTTTTC
* *
4738557 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTA-ATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTATTTTTAAATTTC
*
4738621 TGTTTGTC
66 TGTTTTTC
* *
4738629 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACATGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-ACACGCTGAGGTATTTTTAAATTT
4738694 CTGTTTTTC
65 CTGTTTTTC
*
4738703 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTATTTTTAAATTT
4738768 CTGTTTTTC
65 CTGTTTTTC
* * * * *
4738777 AAAAAAATCAACTCATATTGCGAAAGGTGAGTTAAGCCTCGGGACACACTGAGGTA-ATTTCAAT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTATTTTTAAAT
*
4738841 TTCTGTTTGTC
63 TTCTGTTTTTC
* * * * *
4738852 AAAAATTAACTCATATTGCAAGAGGTGAGTTGAGTCTCGGCTCACATGCTGAGGTCTTTTT-AAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG---ACACGCTGAGGTATTTTTAAAT
*
4738916 TTCTGCTTTTC
63 TTCTGTTTTTC
4738927 AA
1 AA
4738929 TTTCTGTTTT
Statistics
Matches: 334, Mismatches: 29, Indels: 17
0.88 0.08 0.04
Matches are distributed among these distances:
72 57 0.17
73 60 0.18
74 123 0.37
75 42 0.13
76 52 0.16
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTATTTTTAAATTTC
TGTTTTTC
Found at i:4738660 original size:146 final size:146
Alignment explanation
Indices: 4738464--4738891 Score: 608
Period size: 146 Copynumber: 2.9 Consensus size: 146
4738454 ATTTCTGTTC
* * *
4738464 TTCAATTTCTGTTCGTAAAAAAAATCAACTAATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
1 TTCAATTTCTGTTTGT--CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACG
4738529 CTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
63 CTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
4738594 CGGACACGCTGAGGTA-AT
128 CGGACACGCTGAGGTATAT
* *
4738612 TTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACATGCT
1 TTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-ACACGCT
4738677 GAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
65 GAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-
* *
4738742 GGACATGCTGAGGTATTT
129 GGACACGCTGAGGTATAT
* * * * *
4738760 TTAAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTAAGCCTCGGGACACA
1 TTCAATTTCTGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACG
* * * * * *
4738825 CTGAGGTA-ATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCAAGAGGTGAGTTGAGTCT
63 CTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
4738889 CGG
128 CGG
4738892 CTCACATGCT
Statistics
Matches: 254, Mismatches: 20, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
145 2 0.01
146 106 0.42
147 14 0.06
148 33 0.13
149 51 0.20
150 46 0.18
151 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (146 bp):
TTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTG
AGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
ACACGCTGAGGTATAT
Found at i:4738930 original size:14 final size:15
Alignment explanation
Indices: 4738905--4738946 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
4738895 ACATGCTGAG
*
4738905 GTCTTTTTAATTTCT
1 GTCTTTTCAATTTCT
4738920 G-CTTTTCAATTTCT
1 GTCTTTTCAATTTCT
*
4738934 GTTTTTTCAATTT
1 GTCTTTTCAATTT
4738947 ATATTTTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 13 0.54
15 11 0.46
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.64
Consensus pattern (15 bp):
GTCTTTTCAATTTCT
Found at i:4738942 original size:15 final size:14
Alignment explanation
Indices: 4738908--4738957 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
4738898 TGCTGAGGTC
4738908 TTTTT-AATTTCTG
1 TTTTTCAATTTCTG
*
4738921 CTTTTCAATTTCTG
1 TTTTTCAATTTCTG
* *
4738935 TTTTTTCAATTTATA
1 -TTTTTCAATTTCTG
4738950 TTTTTCAA
1 TTTTTCAA
4738958 AAATCAACTC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 4 0.13
14 16 0.52
15 11 0.35
ACGTcount: A:0.20, C:0.12, G:0.04, T:0.64
Consensus pattern (14 bp):
TTTTTCAATTTCTG
Found at i:4739741 original size:30 final size:30
Alignment explanation
Indices: 4739705--4739833 Score: 222
Period size: 30 Copynumber: 4.3 Consensus size: 30
4739695 ACTTTTCTCA
*
4739705 ACTAGCCACTCATTTTCCACCACCAACTCC
1 ACTAGCCACTCTTTTTCCACCACCAACTCC
4739735 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACTCTTTTTCCACCACCAACTCC
* * *
4739765 ACTAGCCACACCTTTTCCATCACCAACTCC
1 ACTAGCCACTCTTTTTCCACCACCAACTCC
4739795 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACTCTTTTTCCACCACCAACTCC
4739825 ACTAGCCAC
1 ACTAGCCAC
4739834 ACCTTCTCCA
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 92 1.00
ACGTcount: A:0.26, C:0.47, G:0.04, T:0.24
Consensus pattern (30 bp):
ACTAGCCACTCTTTTTCCACCACCAACTCC
Found at i:4741634 original size:3 final size:3
Alignment explanation
Indices: 4741626--4741667 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
4741616 GAACTAATCC
4741626 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
4741668 GCAAAGCATG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:4743764 original size:13 final size:12
Alignment explanation
Indices: 4743743--4743780 Score: 58
Period size: 12 Copynumber: 3.1 Consensus size: 12
4743733 TTAGAATCAT
4743743 AAAAATTATAAA
1 AAAAATTATAAA
*
4743755 CAAAATTTATAAA
1 -AAAAATTATAAA
4743768 AAAAATTATAAA
1 AAAAATTATAAA
4743780 A
1 A
4743781 TTTTTAAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 12 0.52
13 11 0.48
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (12 bp):
AAAAATTATAAA
Found at i:4750216 original size:24 final size:23
Alignment explanation
Indices: 4750172--4750217 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
4750162 ATGCATAATC
*
4750172 TTATTAAACACTAATTTATGCAG
1 TTATTAAACACTAATTCATGCAG
4750195 TTATTAAA-ACTTAATGTCATGCA
1 TTATTAAACAC-TAAT-TCATGCA
4750218 ATCAAATCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 2 0.10
23 12 0.60
24 6 0.30
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39
Consensus pattern (23 bp):
TTATTAAACACTAATTCATGCAG
Found at i:4751822 original size:40 final size:40
Alignment explanation
Indices: 4751759--4751854 Score: 131
Period size: 40 Copynumber: 2.4 Consensus size: 40
4751749 ATACCGACCA
* *
4751759 GAAGCCTACTAGGGCATTAAGCCCGACA-ATTACACCGGCAC
1 GAAGCCTGCTA-GGCATTAAGCCCGACAGA-TACACCAGCAC
* *
4751800 GAAGCCTGCTAGGCATTAAGCCCGATAGATACACCAGTAC
1 GAAGCCTGCTAGGCATTAAGCCCGACAGATACACCAGCAC
4751840 GAAGCCTGCTAGGCA
1 GAAGCCTGCTAGGCA
4751855 CAAGGCTCGA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
40 39 0.78
41 11 0.22
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (40 bp):
GAAGCCTGCTAGGCATTAAGCCCGACAGATACACCAGCAC
Found at i:4751896 original size:46 final size:46
Alignment explanation
Indices: 4751844--4751949 Score: 149
Period size: 46 Copynumber: 2.3 Consensus size: 46
4751834 CAGTACGAAG
* *
4751844 CCTGCTAGGCACAAGGCTCGATACATTACAGTACACCGGCATAAAA
1 CCTGCTAGGCACAAGGCCCAATACATTACAGTACACCGGCATAAAA
* * * *
4751890 CCTGCTAGGCATAAGGCCCAATACATTACAGTACACTGGTATAAAG
1 CCTGCTAGGCACAAGGCCCAATACATTACAGTACACCGGCATAAAA
*
4751936 CCTGGTAGGCACAA
1 CCTGCTAGGCACAA
4751950 AGAGCTAATT
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 52 1.00
ACGTcount: A:0.34, C:0.26, G:0.21, T:0.19
Consensus pattern (46 bp):
CCTGCTAGGCACAAGGCCCAATACATTACAGTACACCGGCATAAAA
Found at i:4754295 original size:24 final size:24
Alignment explanation
Indices: 4754201--4754287 Score: 138
Period size: 24 Copynumber: 3.6 Consensus size: 24
4754191 GAAGCTTCAT
4754201 TGTTGTGGTCAAGCCACTCAATAA
1 TGTTGTGGTCAAGCCACTCAATAA
* *
4754225 TGTTGTGGACAAGCCACTCAATAG
1 TGTTGTGGTCAAGCCACTCAATAA
*
4754249 TGTTGTGGCCAAGCCACTCAATAA
1 TGTTGTGGTCAAGCCACTCAATAA
*
4754273 CGTTGTGGTCAAGCC
1 TGTTGTGGTCAAGCC
4754288 GCCTAATATT
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 57 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (24 bp):
TGTTGTGGTCAAGCCACTCAATAA
Found at i:4756368 original size:25 final size:27
Alignment explanation
Indices: 4756331--4756383 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
4756321 TCAAACATGC
4756331 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
4756357 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
4756383 A
1 A
4756384 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:4757915 original size:26 final size:26
Alignment explanation
Indices: 4757866--4757972 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
4757856 TGAAATGCCC
*
4757866 ATCATGGAACA-TTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
4757891 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
4757917 ATCATGGAATATTTACCTAATCTATT
1 ATCATGGAACATTTACCTAACCCATT
4757943 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
4757969 ATCA
1 ATCA
4757973 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
25 11 0.15
26 63 0.85
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:4759658 original size:43 final size:43
Alignment explanation
Indices: 4759610--4759701 Score: 105
Period size: 43 Copynumber: 2.1 Consensus size: 43
4759600 ATTTATTTGA
* * *
4759610 AAAAACACCGCTAAA-AGTCATGACCTTTAGTAGCGCTTTTCCT
1 AAAAACACCGCTAAAGA-CCATGACCTTTAGCAGCACTTTTCCT
* * * *
4759653 AAAAACGCCTCTAAAGACCATGACCTTTAGCGGCACTTTTTCT
1 AAAAACACCGCTAAAGACCATGACCTTTAGCAGCACTTTTCCT
4759696 AAAAAC
1 AAAAAC
4759702 GCCACTATAT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
43 40 0.98
44 1 0.02
ACGTcount: A:0.35, C:0.26, G:0.13, T:0.26
Consensus pattern (43 bp):
AAAAACACCGCTAAAGACCATGACCTTTAGCAGCACTTTTCCT
Found at i:4762572 original size:26 final size:26
Alignment explanation
Indices: 4762521--4762572 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
4762511 ATGACTATTT
**
4762521 CAGCCCAAAACTCTCTTTCCTTTTTG
1 CAGCCCAAAACTCTCTTTCCCGTTTG
4762547 CAGCCCAAAACTCTCTTTCCCGTTTG
1 CAGCCCAAAACTCTCTTTCCCGTTTG
4762573 TCTTTTACAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.19, C:0.37, G:0.10, T:0.35
Consensus pattern (26 bp):
CAGCCCAAAACTCTCTTTCCCGTTTG
Found at i:4765227 original size:20 final size:20
Alignment explanation
Indices: 4765202--4765239 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
4765192 CTAAAAACGC
*
4765202 CAGTATAGCTTAACTTTTCA
1 CAGTATAGCTTAAATTTTCA
*
4765222 CAGTATAGTTTAAATTTT
1 CAGTATAGCTTAAATTTT
4765240 TGTGGCGTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.13, G:0.11, T:0.45
Consensus pattern (20 bp):
CAGTATAGCTTAAATTTTCA
Found at i:4765982 original size:15 final size:15
Alignment explanation
Indices: 4765959--4766009 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
4765949 ATACCCATGG
*
4765959 CCATTAAACCTTAAA
1 CCATAAAACCTTAAA
*
4765974 CCATAAAACCCTAAA
1 CCATAAAACCTTAAA
* *
4765989 TCAT-AGACCTTAAA
1 CCATAAAACCTTAAA
*
4766003 CCTTAAA
1 CCATAAA
4766010 TATTAAACTG
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
14 10 0.37
15 17 0.63
ACGTcount: A:0.47, C:0.27, G:0.02, T:0.24
Consensus pattern (15 bp):
CCATAAAACCTTAAA
Found at i:4766353 original size:40 final size:40
Alignment explanation
Indices: 4766257--4766424 Score: 185
Period size: 41 Copynumber: 4.1 Consensus size: 40
4766247 GTTATATGAC
* * * * * *
4766257 TTTTAGCGTCGTTTTATCAAAAGCGTCGCTAATGCT-TCGAC
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCT-G-T
*
4766298 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGT
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGT
* * *
4766338 TTTTAGCGGCGTTTTAACAAAAAATGCCGCTATTGCACTGT
1 TTTTAGCGGCGTTTT-ACCAAAAACGCCGCTATTGCTCTGT
* *
4766379 TTTTAGCGGCGTTTTACTAAAAACGCCGCTATTACTCTGT
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGT
4766419 GTTTTA
1 -TTTTA
4766425 CAATTTTTGC
Statistics
Matches: 111, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
40 36 0.32
41 74 0.67
42 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.37
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGT
Found at i:4771374 original size:24 final size:23
Alignment explanation
Indices: 4771337--4771387 Score: 75
Period size: 24 Copynumber: 2.2 Consensus size: 23
4771327 TTTCTAGAAG
* *
4771337 ATTTAGTATTATTAGTATAATAT
1 ATTTAGGATTATTAGCATAATAT
4771360 ATTTAGGATTTATTAGCATAATAT
1 ATTTAGGA-TTATTAGCATAATAT
4771384 ATTT
1 ATTT
4771388 GACATTGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 7 0.28
24 18 0.72
ACGTcount: A:0.37, C:0.02, G:0.10, T:0.51
Consensus pattern (23 bp):
ATTTAGGATTATTAGCATAATAT
Found at i:4771398 original size:24 final size:24
Alignment explanation
Indices: 4771337--4771399 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 24
4771327 TTTCTAGAAG
* *
4771337 ATTTAGTATT-ATTAGTATAATAT
1 ATTTAGCATTGATTAGCATAATAT
* *
4771360 ATTTAGGATTTATTAGCATAATAT
1 ATTTAGCATTGATTAGCATAATAT
4771384 ATTT-GACATTGATTAG
1 ATTTAG-CATTGATTAG
4771400 AATTAAGTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
23 10 0.29
24 24 0.71
ACGTcount: A:0.37, C:0.03, G:0.13, T:0.48
Consensus pattern (24 bp):
ATTTAGCATTGATTAGCATAATAT
Found at i:4779624 original size:47 final size:46
Alignment explanation
Indices: 4779557--4779679 Score: 142
Period size: 47 Copynumber: 2.7 Consensus size: 46
4779547 GTTGTTGGCT
* * *
4779557 AGTGTAAGA-CA-GTCTGGGACATGCATTGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGACCACA-GATGAGAGCC
*** *
4779602 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGACCACAGATGAGAGCC
4779649 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACAT-GCATCG
4779680 GCACCTTACC
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
45 9 0.13
46 2 0.03
47 50 0.74
48 7 0.10
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGACCACAGATGAGAGCC
Found at i:4784002 original size:15 final size:15
Alignment explanation
Indices: 4783982--4784016 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
4783972 TAGGAAGATA
*
4783982 TTATTTTATTTTTAT
1 TTATTTTATTTTAAT
4783997 TTATTTTATTTTAAT
1 TTATTTTATTTTAAT
4784012 TTATT
1 TTATT
4784017 AAATTACTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (15 bp):
TTATTTTATTTTAAT
Found at i:4784158 original size:41 final size:40
Alignment explanation
Indices: 4784101--4784184 Score: 114
Period size: 41 Copynumber: 2.1 Consensus size: 40
4784091 TACTTTTGTA
* *
4784101 TTCCTACTTCAATTTGGAATTGGATTATTCTCTCTTCTCTT
1 TTCCTACTTCAATTTGGAATTGAATTATTATCTCTTCT-TT
* * *
4784142 TTCCTATTTCTATTTGGAATTGAATTATTATCTTTTCTTT
1 TTCCTACTTCAATTTGGAATTGAATTATTATCTCTTCTTT
4784182 TTC
1 TTC
4784185 AATTTGACGT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
40 5 0.13
41 33 0.87
ACGTcount: A:0.18, C:0.18, G:0.08, T:0.56
Consensus pattern (40 bp):
TTCCTACTTCAATTTGGAATTGAATTATTATCTCTTCTTT
Found at i:4800990 original size:28 final size:28
Alignment explanation
Indices: 4800959--4801012 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
4800949 TATGACCCGA
*
4800959 GTTAGTATACTGAAAGTGTAAAGTTTCG
1 GTTAGTATACTAAAAGTGTAAAGTTTCG
4800987 GTTAGTATACTAAAAGTGTAAAGTTT
1 GTTAGTATACTAAAAGTGTAAAGTTT
4801013 TGGTAGTGTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.35, C:0.06, G:0.22, T:0.37
Consensus pattern (28 bp):
GTTAGTATACTAAAAGTGTAAAGTTTCG
Found at i:4805198 original size:27 final size:27
Alignment explanation
Indices: 4805159--4805218 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
4805149 AAAAAGGTTC
* * *
4805159 TTCTTTCTTCAAGATATTATTCTCTAT
1 TTCTCTCTGCAAGATATTACTCTCTAT
4805186 TTCTCTCTGCAAGATATTACTCTCTAT
1 TTCTCTCTGCAAGATATTACTCTCTAT
4805213 TTCTCT
1 TTCTCT
4805219 TTCTTAAATC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.20, C:0.23, G:0.05, T:0.52
Consensus pattern (27 bp):
TTCTCTCTGCAAGATATTACTCTCTAT
Found at i:4807769 original size:12 final size:13
Alignment explanation
Indices: 4807752--4807784 Score: 50
Period size: 12 Copynumber: 2.5 Consensus size: 13
4807742 GCAATTTAAA
4807752 TTTTATT-CTAAT
1 TTTTATTACTAAT
4807764 TTTTATTACTAAT
1 TTTTATTACTAAT
4807777 TCTTTATT
1 T-TTTATT
4807785 TTCCCTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.37
13 6 0.32
14 6 0.32
ACGTcount: A:0.24, C:0.09, G:0.00, T:0.67
Consensus pattern (13 bp):
TTTTATTACTAAT
Found at i:4820264 original size:110 final size:110
Alignment explanation
Indices: 4820141--4820340 Score: 287
Period size: 110 Copynumber: 1.8 Consensus size: 110
4820131 AAGATTGGAA
* * * * *
4820141 TGGCAGATTACGATACATGAAAGTGTGTGA-GTCCATGTGGCTAAGACCCACT-GTAAGATATGA
1 TGGCAGATCACGATACATGAAAATGTGT-ACGTCCATGTGGCTAAGA-CCAATGGCAAGATACGA
4820204 CTGCATGAATGTTCATGATGTAGCCTTTAATAGTGTGAACATTGAAC
64 CTGCATGAATGTTCATGATGTAGCCTTTAATAGTGTGAACATTGAAC
* *
4820251 TGGCAGATCACGATACATGAAAATGTGTACGTCCATGTGGCTGAGACCAATGGCAAGATACGATT
1 TGGCAGATCACGATACATGAAAATGTGTACGTCCATGTGGCTAAGACCAATGGCAAGATACGACT
* *
4820316 GTATGAATGTTCATGGTGTAGCCTT
66 GCATGAATGTTCATGATGTAGCCTT
4820341 CGATAATATG
Statistics
Matches: 79, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
109 5 0.06
110 74 0.94
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (110 bp):
TGGCAGATCACGATACATGAAAATGTGTACGTCCATGTGGCTAAGACCAATGGCAAGATACGACT
GCATGAATGTTCATGATGTAGCCTTTAATAGTGTGAACATTGAAC
Found at i:4820369 original size:110 final size:110
Alignment explanation
Indices: 4820144--4820381 Score: 264
Period size: 110 Copynumber: 2.2 Consensus size: 110
4820134 ATTGGAATGG
* * * * *
4820144 CAGATTACGATACATGAAAGTGTGTGAGTCCATGTGGCTAAGACCCACTGTAAGATATGACTGCA
1 CAGATCACGATACATGAAAATGTGTGAGTCCATGTGGCTAAGACCCAATGCAAGATACGACTGCA
* * * * ***
4820209 TGAATGTTCATGATGTAGCCTTTAATAGTGTGAACATTGAACTGG
66 TGAATGTTCATGATGTAGCCTTCAATAATATGAACATAGAACAAA
* *
4820254 CAGATCACGATACATGAAAATGTGT-ACGTCCATGTGGCTGAGA-CCAATGGCAAGATACGATTG
1 CAGATCACGATACATGAAAATGTGTGA-GTCCATGTGGCTAAGACCCAAT-GCAAGATACGACTG
* * *
4820317 TATGAATGTTCATGGTGTAGCCTTCGATAATATGAACATAGAACAAA
64 CATGAATGTTCATGATGTAGCCTTCAATAATATGAACATAGAACAAA
* **
4820364 TAGATCATAATACATGAA
1 CAGATCACGATACATGAA
4820382 TTTATGTATA
Statistics
Matches: 106, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
109 5 0.05
110 101 0.95
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (110 bp):
CAGATCACGATACATGAAAATGTGTGAGTCCATGTGGCTAAGACCCAATGCAAGATACGACTGCA
TGAATGTTCATGATGTAGCCTTCAATAATATGAACATAGAACAAA
Found at i:4820501 original size:23 final size:24
Alignment explanation
Indices: 4820454--4820502 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
4820444 TAAACACGTA
*
4820454 ATTTTGTATGTCGCCTTTGTAGCAT
1 ATTTTGTATG-CGCCCTTGTAGCAT
*
4820479 ATTTTGTATG-GCCCTTGTGGCAT
1 ATTTTGTATGCGCCCTTGTAGCAT
4820502 A
1 A
4820503 CTTTAATAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 12 0.55
25 10 0.45
ACGTcount: A:0.16, C:0.16, G:0.22, T:0.45
Consensus pattern (24 bp):
ATTTTGTATGCGCCCTTGTAGCAT
Found at i:4834676 original size:28 final size:28
Alignment explanation
Indices: 4834639--4834702 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 28
4834629 CACATTTTTT
* *
4834639 CCCTTATTCCTTTTTCCTCTCTTTTTCA
1 CCCTTATTCCTTTCTCCTCTCTTTTGCA
*
4834667 CCCTTCTTCCTTTCTCCTCTCTTTTGCA
1 CCCTTATTCCTTTCTCCTCTCTTTTGCA
*
4834695 CCTTTATT
1 CCCTTATT
4834703 TATCGTCCAC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.06, C:0.38, G:0.02, T:0.55
Consensus pattern (28 bp):
CCCTTATTCCTTTCTCCTCTCTTTTGCA
Found at i:4841822 original size:27 final size:26
Alignment explanation
Indices: 4841787--4841872 Score: 127
Period size: 27 Copynumber: 3.2 Consensus size: 26
4841777 AGCATGGCTG
* *
4841787 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
4841813 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
4841841 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
4841868 CCAGA
1 CCAGA
4841873 TCGTCAGATA
Statistics
Matches: 55, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
26 5 0.09
27 33 0.60
28 17 0.31
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.14
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:4841870 original size:55 final size:56
Alignment explanation
Indices: 4841787--4841902 Score: 155
Period size: 55 Copynumber: 2.1 Consensus size: 56
4841777 AGCATGGCTG
*
4841787 CCAGAACAGATAATGTGACAGAGTCACCAGAT-ACAGATAA-TCGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATCACAGATAATTCGTGGCAGAGCCA
* * * *
4841841 CCAGAACAGATATATGTGGCAGAGCCACCAGATCGTCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATC-ACAGATAATTCGTGGCAGAGCCA
4841899 CCAG
1 CCAG
4841903 GACGCTTCTT
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
54 12 0.23
55 18 0.34
57 7 0.13
58 16 0.30
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.17
Consensus pattern (56 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATCACAGATAATTCGTGGCAGAGCCA
Found at i:4849635 original size:27 final size:26
Alignment explanation
Indices: 4849600--4849694 Score: 136
Period size: 27 Copynumber: 3.5 Consensus size: 26
4849590 AGCATGGCTG
* *
4849600 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
4849626 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
4849654 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
*
4849681 CCAGATCAGATAAT
1 CCAGAACAGATAAT
4849695 TTGTGGCTAT
Statistics
Matches: 63, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
26 7 0.11
27 39 0.62
28 17 0.27
ACGTcount: A:0.39, C:0.22, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:4856066 original size:27 final size:27
Alignment explanation
Indices: 4856028--4856081 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
4856018 ACTTCAACCA
*
4856028 AATTAACATTTTACTTAGAAAAATTAT
1 AATTAACATTTTACTCAGAAAAATTAT
*
4856055 AATTGACATTTTACTCAGAAAAATTAT
1 AATTAACATTTTACTCAGAAAAATTAT
4856082 CATTTCTTCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.46, C:0.09, G:0.06, T:0.39
Consensus pattern (27 bp):
AATTAACATTTTACTCAGAAAAATTAT
Found at i:4861619 original size:23 final size:23
Alignment explanation
Indices: 4861568--4861622 Score: 101
Period size: 23 Copynumber: 2.4 Consensus size: 23
4861558 ACAAGTGAAT
*
4861568 TAATTAAAAATTGAATTTAAAGC
1 TAATTCAAAATTGAATTTAAAGC
4861591 TAATTCAAAATTGAATTTAAAGC
1 TAATTCAAAATTGAATTTAAAGC
4861614 TAATTCAAA
1 TAATTCAAA
4861623 TTGGGTCCAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.51, C:0.07, G:0.07, T:0.35
Consensus pattern (23 bp):
TAATTCAAAATTGAATTTAAAGC
Found at i:4868844 original size:34 final size:34
Alignment explanation
Indices: 4868801--4868865 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
4868791 AAAGAGTGAA
4868801 GGAAGAAGAAAGGAGTTTGTCCAAGCATTGGTTG
1 GGAAGAAGAAAGGAGTTTGTCCAAGCATTGGTTG
4868835 GGAAGAAGAAAGGAGTTTGTCCAAGCATTGG
1 GGAAGAAGAAAGGAGTTTGTCCAAGCATTGG
4868866 ATGAAAGTAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.34, C:0.09, G:0.35, T:0.22
Consensus pattern (34 bp):
GGAAGAAGAAAGGAGTTTGTCCAAGCATTGGTTG
Found at i:4871245 original size:23 final size:23
Alignment explanation
Indices: 4871214--4871291 Score: 95
Period size: 23 Copynumber: 3.4 Consensus size: 23
4871204 TCGTAAGAGT
* *
4871214 TTACTGTTTCAGCTCACTGGAGC
1 TTACCGTTTCAGCTCAATGGAGC
*
4871237 TTACCGTTTCAGCTCATTGGAGC
1 TTACCGTTTCAGCTCAATGGAGC
* *
4871260 TTACTGTTT-AGCTCAATAGAGC
1 TTACCGTTTCAGCTCAATGGAGC
*
4871282 TTACCATTTC
1 TTACCGTTTC
4871292 TGTAATGCGG
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
22 18 0.38
23 29 0.62
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (23 bp):
TTACCGTTTCAGCTCAATGGAGC
Found at i:4871865 original size:5 final size:5
Alignment explanation
Indices: 4871855--4871896 Score: 61
Period size: 5 Copynumber: 8.6 Consensus size: 5
4871845 AAAAAATTGT
4871855 TATTA TATTA TATTA TATTA TATTA TA-TA T-TATA TATTA TAT
1 TATTA TATTA TATTA TATTA TATTA TATTA TAT-TA TATTA TAT
4871897 AAATAAGTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
4 3 0.09
5 30 0.88
6 1 0.03
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:4871885 original size:7 final size:7
Alignment explanation
Indices: 4871858--4871897 Score: 55
Period size: 7 Copynumber: 5.6 Consensus size: 7
4871848 AAATTGTTAT
4871858 TATATTA
1 TATATTA
4871865 TAT-TATA
1 TATAT-TA
4871872 TTATATTA
1 -TATATTA
4871880 TATATTA
1 TATATTA
4871887 TATATTA
1 TATATTA
4871894 TATA
1 TATA
4871898 AATAAGTAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
6 1 0.03
7 23 0.77
8 5 0.17
9 1 0.03
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
TATATTA
Found at i:4872372 original size:24 final size:20
Alignment explanation
Indices: 4872346--4872386 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
4872336 AAGATATAAA
4872346 AGTAAGTGAATTTAGTTAGG
1 AGTAAGTGAATTTAGTTAGG
4872366 AGTAAGTGAATTTAGTTAGG
1 AGTAAGTGAATTTAGTTAGG
4872386 A
1 A
4872387 TTAAATTGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.37, C:0.00, G:0.29, T:0.34
Consensus pattern (20 bp):
AGTAAGTGAATTTAGTTAGG
Found at i:4873108 original size:20 final size:19
Alignment explanation
Indices: 4873083--4873120 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
4873073 TCTATAATCC
4873083 GAATTTAATATTTAATTATT
1 GAATTTAATATTT-ATTATT
*
4873103 GAATTTATTATTTATTAT
1 GAATTTAATATTTATTAT
4873121 GTATGGTAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (19 bp):
GAATTTAATATTTATTATT
Found at i:4873677 original size:12 final size:12
Alignment explanation
Indices: 4873660--4873684 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
4873650 GCCGACTACT
4873660 GTTACTGTTACC
1 GTTACTGTTACC
4873672 GTTACTGTTACC
1 GTTACTGTTACC
4873684 G
1 G
4873685 ATTTGGCACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.40
Consensus pattern (12 bp):
GTTACTGTTACC
Found at i:4873712 original size:45 final size:45
Alignment explanation
Indices: 4873662--4873772 Score: 161
Period size: 45 Copynumber: 2.5 Consensus size: 45
4873652 CGACTACTGT
* **
4873662 TACTGTTACCGTTACTGTTACCGATTTGGCACTTTGTGTGTCT-AA
1 TACTGTTACTGTTACTGTTACCGATTCAGCACTTTGTGTGT-TGAA
* *
4873707 TACTGTTACTGTTACCGTTATCGATTCAGCACTTTGTGTGTTGAA
1 TACTGTTACTGTTACTGTTACCGATTCAGCACTTTGTGTGTTGAA
4873752 TACTGTTACTGTTACTGTTAC
1 TACTGTTACTGTTACTGTTAC
4873773 TGTTACTGTT
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
44 1 0.02
45 57 0.98
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.43
Consensus pattern (45 bp):
TACTGTTACTGTTACTGTTACCGATTCAGCACTTTGTGTGTTGAA
Found at i:4873763 original size:6 final size:6
Alignment explanation
Indices: 4873752--4873782 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
4873742 GTGTGTTGAA
4873752 TACTGT TACTGT TACTGT TACTGT TACTGT T
1 TACTGT TACTGT TACTGT TACTGT TACTGT T
4873783 CCGGATTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.52
Consensus pattern (6 bp):
TACTGT
Found at i:4873969 original size:18 final size:18
Alignment explanation
Indices: 4873946--4874148 Score: 142
Period size: 18 Copynumber: 11.3 Consensus size: 18
4873936 AAAGGTATAA
* *
4873946 AATAATTGATTATTACTG
1 AATAATTGACTGTTACTG
*
4873964 AATAATTGACTGTTACCG
1 AATAATTGACTGTTACTG
4873982 AATAATTGACTGTTACTG
1 AATAATTGACTGTTACTG
* * *
4874000 GATAATAGACTGTTACCG
1 AATAATTGACTGTTACTG
* * *
4874018 AATAACTGAATATTACTG
1 AATAATTGACTGTTACTG
*
4874036 AATAATTGA-TCATTACTG
1 AATAATTGACT-GTTACTG
* * * * *
4874054 AATAACTAATTGTCATTG
1 AATAATTGACTGTTACTG
* *
4874072 AATAAATGACTATTACTG
1 AATAATTGACTGTTACTG
* * * *
4874090 AATAACTTAATTGCTATTG
1 AATAA-TTGACTGTTACTG
* *
4874109 AAT-ATCTGA-TTTTACTA
1 AATAAT-TGACTGTTACTG
4874126 AATAATTGACTGTTACTG
1 AATAATTGACTGTTACTG
*
4874144 GATAA
1 AATAA
4874149 CCGATCAATT
Statistics
Matches: 140, Mismatches: 39, Indels: 12
0.73 0.20 0.06
Matches are distributed among these distances:
17 12 0.09
18 117 0.84
19 11 0.08
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.37
Consensus pattern (18 bp):
AATAATTGACTGTTACTG
Found at i:4874203 original size:18 final size:18
Alignment explanation
Indices: 4874168--4874228 Score: 59
Period size: 18 Copynumber: 3.4 Consensus size: 18
4874158 TGATCGATAC
* *
4874168 TGAATAACTGGTTATTAT
1 TGAATAACTGATTGTTAT
*
4874186 TGAATAATTGATTGTTAT
1 TGAATAACTGATTGTTAT
* * * *
4874204 CGAATAAGTGACTGTTAC
1 TGAATAACTGATTGTTAT
4874222 TGAATAA
1 TGAATAA
4874229 ATAATTGTTC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.36, C:0.07, G:0.18, T:0.39
Consensus pattern (18 bp):
TGAATAACTGATTGTTAT
Found at i:4877207 original size:22 final size:21
Alignment explanation
Indices: 4877177--4877223 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
4877167 TACAAATTAA
4877177 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
4877199 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
4877220 ATCT
1 ATCT
4877224 AAGATTGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:4877229 original size:19 final size:19
Alignment explanation
Indices: 4877194--4877272 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
4877184 AGATTACAAG
4877194 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
4877215 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
*
4877232 ATCATACCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
4877251 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
4877270 ATC
1 ATC
4877273 CTTAAAGATT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
17 16 0.30
19 29 0.54
20 1 0.02
21 8 0.15
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:4877281 original size:36 final size:35
Alignment explanation
Indices: 4877196--4877282 Score: 115
Period size: 36 Copynumber: 2.4 Consensus size: 35
4877186 ATTACAAGAT
4877196 CATAT-CTTCAAGATTGCATATCATATCTAAGATTG
1 CATATCCTT-AAGATTGCATATCATATCTAAGATTG
*
4877231 TATCATACC-TAAGATTGCATATCATATCTAAGATTG
1 CAT-AT-CCTTAAGATTGCATATCATATCTAAGATTG
4877267 CATATCCTTAAAGATT
1 CATATCCTT-AAGATT
4877283 ATATTTCCAT
Statistics
Matches: 45, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
34 2 0.04
35 5 0.11
36 36 0.80
37 1 0.02
38 1 0.02
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.37
Consensus pattern (35 bp):
CATATCCTTAAGATTGCATATCATATCTAAGATTG
Found at i:4881989 original size:45 final size:45
Alignment explanation
Indices: 4881937--4882047 Score: 134
Period size: 45 Copynumber: 2.5 Consensus size: 45
4881927 CGACTACTAT
** * *
4881937 TACTGTTACCATTACTGTTACCGATT-TGACACTTTGTGTGTCGAA
1 TACTGTTACTGTTACTGTTACCGATTCAG-CACTTTGTGCGTCGAA
* * * *
4881982 TGCTGTTACTGTTACAGTTATCGATTCAGCACTTTGTGCGTTGAA
1 TACTGTTACTGTTACTGTTACCGATTCAGCACTTTGTGCGTCGAA
4882027 TACTGTTACTGTTACTGTTAC
1 TACTGTTACTGTTACTGTTAC
4882048 TGTTCCAAAT
Statistics
Matches: 54, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
45 53 0.98
46 1 0.02
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.41
Consensus pattern (45 bp):
TACTGTTACTGTTACTGTTACCGATTCAGCACTTTGTGCGTCGAA
Found at i:4882038 original size:6 final size:6
Alignment explanation
Indices: 4882027--4882051 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
4882017 GTGCGTTGAA
4882027 TACTGT TACTGT TACTGT TACTGT T
1 TACTGT TACTGT TACTGT TACTGT T
4882052 CCAAATTTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.52
Consensus pattern (6 bp):
TACTGT
Found at i:4882254 original size:18 final size:18
Alignment explanation
Indices: 4882233--4882423 Score: 145
Period size: 18 Copynumber: 10.6 Consensus size: 18
4882223 TAACTGATTA
4882233 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
*
4882251 TTACCGAATAATTGACTG
1 TTACTGAATAATTGACTG
* *
4882269 TTACTGGATAATAGACTG
1 TTACTGAATAATTGACTG
* * *
4882287 TTACTGAATAACTGAATA
1 TTACTGAATAATTGACTG
* *
4882305 TTACTCAATAATTGA-TCA
1 TTACTGAATAATTGACT-G
* *
4882323 TTACTGAATAACTGATTG
1 TTACTGAATAATTGACTG
* * * *
4882341 TCACTGAATAAATAATTG
1 TTACTGAATAATTGACTG
* * *
4882359 TTACTAAATAACTTAATTG
1 TTACTGAATAA-TTGACTG
* *
4882378 CTACTGAAT-ATCTGA-TT
1 TTACTGAATAAT-TGACTG
*
4882395 TTACTAAATAATTGACTG
1 TTACTGAATAATTGACTG
*
4882413 TTACTGGATAA
1 TTACTGAATAA
4882424 CCGATCAATT
Statistics
Matches: 138, Mismatches: 29, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
17 13 0.09
18 111 0.80
19 14 0.10
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (18 bp):
TTACTGAATAATTGACTG
Found at i:4882512 original size:18 final size:18
Alignment explanation
Indices: 4882221--4882516 Score: 121
Period size: 18 Copynumber: 16.1 Consensus size: 18
4882211 AAAGGTATAA
* *
4882221 AATAACTGATTATTACTG
1 AATAAATGATTGTTACTG
* * *
4882239 AATAATTGACTGTTACCG
1 AATAAATGATTGTTACTG
* *
4882257 AATAATTGACTGTTACTG
1 AATAAATGATTGTTACTG
* *
4882275 GAT-AATAGACTGTTACTG
1 AATAAAT-GATTGTTACTG
* * * *
4882293 AATAACTGAATATTACTC
1 AATAAATGATTGTTACTG
* **
4882311 AATAATTGATCATTACTG
1 AATAAATGATTGTTACTG
* *
4882329 AATAACTGATTGTCACTG
1 AATAAATGATTGTTACTG
* *
4882347 AATAAATAATTGTTACTA
1 AATAAATGATTGTTACTG
* * *
4882365 AATAACTTAATTGCTACTG
1 AATAA-ATGATTGTTACTG
** *
4882384 AATATCTGATT-TTACTA
1 AATAAATGATTGTTACTG
* *
4882401 AATAATTGACTGTTACTG
1 AATAAATGATTGTTACTG
* *
4882419 GATAACCGATCAATTGATCGATACTG
1 AATAA---AT-GATTG-T---TACTG
* * * * *
4882445 AATGACTGGTTATTATTG
1 AATAAATGATTGTTACTG
* *
4882463 AATAATTGATTGTTACCG
1 AATAAATGATTGTTACTG
* *
4882481 AATAAGTGACTGTTACTG
1 AATAAATGATTGTTACTG
*
4882499 AATAAATAATTGTT-CTG
1 AATAAATGATTGTTACTG
4882516 A
1 A
4882517 TTGTTAATAA
Statistics
Matches: 207, Mismatches: 59, Indels: 25
0.71 0.20 0.09
Matches are distributed among these distances:
17 18 0.09
18 156 0.75
19 16 0.08
21 2 0.01
22 5 0.02
23 2 0.01
26 8 0.04
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37
Consensus pattern (18 bp):
AATAAATGATTGTTACTG
Found at i:4885408 original size:20 final size:19
Alignment explanation
Indices: 4885376--4885413 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
4885366 CGTATACGTG
4885376 GTATTTTTGAAAAACATTT
1 GTATTTTTGAAAAACATTT
4885395 GTATTTTTGAAAAACATTT
1 GTATTTTTGAAAAACATTT
4885414 ATCTTTCGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.05, G:0.11, T:0.47
Consensus pattern (19 bp):
GTATTTTTGAAAAACATTT
Found at i:4885424 original size:18 final size:19
Alignment explanation
Indices: 4885376--4885425 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
4885366 CGTATACGTG
*
4885376 GTATTTTTGAAAAACATTT
1 GTATTTTCGAAAAACATTT
*
4885395 GTATTTTTGAAAAACA-TT
1 GTATTTTCGAAAAACATTT
4885413 -TATCTTTCGAAAA
1 GTAT-TTTCGAAAA
4885426 CCCGTGCCCT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 3 0.10
18 10 0.34
19 16 0.55
ACGTcount: A:0.38, C:0.08, G:0.10, T:0.44
Consensus pattern (19 bp):
GTATTTTCGAAAAACATTT
Found at i:4887057 original size:27 final size:27
Alignment explanation
Indices: 4887027--4887091 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
4887017 ATTACCAAAG
* * *
4887027 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
4887054 TACCCTTGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
4887081 TACCCTCGATT
1 TACCCTCGATT
4887092 GTGAAATTAC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.26, C:0.23, G:0.09, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGTTT
Found at i:4887215 original size:27 final size:26
Alignment explanation
Indices: 4887123--4887301 Score: 153
Period size: 27 Copynumber: 6.7 Consensus size: 26
4887113 TGTAGGATAG
* * **
4887123 AATTACCAAAACACCCCTATTTTACAA
1 AATTACCAAAATA-CCCTAGTTTGTAA
4887150 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATA-CCCTAGTTTGTAA
4887177 AATTACCAAAATATCCCTAGTTTGTAA
1 AATTACCAAAATA-CCCTAGTTTGTAA
** * *
4887204 AATTACTGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACC-CTAGTTTGTAA
* * * *
4887231 AATTATCGAAATACCTTCAATTTGTAA
1 AATTACCAAAATACCCT-AGTTTGTAA
* **
4887258 AATTACCAAAATACCCCTAATTTACAA
1 AATTACCAAAATA-CCCTAGTTTGTAA
4887285 AATTA-CAGAAATACCCT
1 AATTACCA-AAATACCCT
4887302 CGACTTTCTA
Statistics
Matches: 128, Mismatches: 20, Indels: 9
0.82 0.13 0.06
Matches are distributed among these distances:
26 9 0.07
27 116 0.91
28 3 0.02
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.30
Consensus pattern (26 bp):
AATTACCAAAATACCCTAGTTTGTAA
Found at i:4887234 original size:81 final size:81
Alignment explanation
Indices: 4887149--4887299 Score: 205
Period size: 81 Copynumber: 1.9 Consensus size: 81
4887139 CTATTTTACA
* * * ** *
4887149 AAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATATCCCTAGTTTGTAAAATTACTGA
1 AAATTACCAAAATACCCTC-AATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAGA
4887213 AATACCACTGGTTTGTG
65 AATACCACTGGTTTGTG
* * *
4887230 AAATTATCGAAATACCTTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAGAA
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAGAA
4887295 ATACC
66 ATACC
4887300 CTCGACTTTC
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
81 59 0.98
82 1 0.02
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.30
Consensus pattern (81 bp):
AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAGAA
ATACCACTGGTTTGTG
Found at i:4887351 original size:27 final size:27
Alignment explanation
Indices: 4887312--4887363 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
4887302 CGACTTTCTA
4887312 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
4887339 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
4887364 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:4888322 original size:25 final size:25
Alignment explanation
Indices: 4888289--4888358 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
4888279 AAGGAGTGCT
* *
4888289 AAAAGGGCTCTACCCCAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
**
4888314 AAAAGGGCTTTGCCCCAGTTTATTA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
4888339 GAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
4888359 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:4888371 original size:24 final size:23
Alignment explanation
Indices: 4888314--4888385 Score: 90
Period size: 25 Copynumber: 3.0 Consensus size: 23
4888304 CAGTTTACCA
4888314 AAAAGGGCTTTGCCCCAGTTTATT
1 AAAAGGGCTTTGCCCCAG-TTATT
4888338 AGAAAGGGCTTTGCCCCAGTTATT
1 A-AAAGGGCTTTGCCCCAGTTATT
**
4888362 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTTTGCC-CCAGTTAT
4888386 ATGATAAAGC
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
23 4 0.09
24 14 0.33
25 25 0.58
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTTGCCCCAGTTATT
Found at i:4888565 original size:42 final size:42
Alignment explanation
Indices: 4888506--4888597 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
4888496 TAGTCTCCCC
* **
4888506 AAATGGGCTTGCATACATTTATTGACATTACATGTGATATTG
1 AAATGGGCTTACATACATCCATTGACATTACATGTGATATTG
*
4888548 AAATGGGCTTACATACATCCATTGGCATTACATGTGATATTG
1 AAATGGGCTTACATACATCCATTGACATTACATGTGATATTG
4888590 AAATGGGC
1 AAATGGGC
4888598 CTAAGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTACATACATCCATTGACATTACATGTGATATTG
Found at i:4888656 original size:31 final size:31
Alignment explanation
Indices: 4888621--4888704 Score: 136
Period size: 31 Copynumber: 2.7 Consensus size: 31
4888611 CGTTTACAGT
4888621 AAAGGCTTCGGCCCAGTGATAT-AGTTTATGA
1 AAAGGCTTCGGCCCAGTGATATGA-TTTATGA
*
4888652 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
4888683 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
4888705 TCAAGACTAA
Statistics
Matches: 51, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
30 5 0.10
31 45 0.88
32 1 0.02
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:4891024 original size:27 final size:27
Alignment explanation
Indices: 4890994--4891085 Score: 105
Period size: 27 Copynumber: 3.4 Consensus size: 27
4890984 ATTACCAAAG
* *
4890994 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
* *
4891021 TACCCTTGATTTATAAAATTACCATTT
1 TACCCTCGATTTATAAAATTACCGTTT
* **
4891048 TACACTC-AGTTTGCAAAATTACCGTTT
1 TACCCTCGA-TTTATAAAATTACCGTTT
4891075 TACCCTCGATT
1 TACCCTCGATT
4891086 GTGAAATTAC
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
26 1 0.02
27 51 0.96
28 1 0.02
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCGTTT
Found at i:4891210 original size:81 final size:81
Alignment explanation
Indices: 4891117--4891294 Score: 232
Period size: 81 Copynumber: 2.2 Consensus size: 81
4891107 TGTAGGATAG
* *
4891117 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAA
1 AATTACCGAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTC-AATTTGTAAAATTACCAAA
* * **
4891181 ATATCCCTAGTTTGTAA
65 ATACCCCTAATTTACAA
* * * *
4891198 AATTACCGAAATACCACTGGTTTGTGAAATTACTAAAATACCCTCAATTTGTAAAATTACCAAAA
1 AATTACCGAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAA
4891263 TACCCCTAATTTACAA
66 TACCCCTAATTTACAA
* *
4891279 AATTGCAGAAATACCC
1 AATTACCGAAATACCC
4891295 TTGACTTTCT
Statistics
Matches: 83, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
81 82 0.99
82 1 0.01
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (81 bp):
AATTACCGAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAA
TACCCCTAATTTACAA
Found at i:4891282 original size:27 final size:27
Alignment explanation
Indices: 4891117--4891270 Score: 229
Period size: 27 Copynumber: 5.7 Consensus size: 27
4891107 TGTAGGATAG
4891117 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
4891144 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
*
4891171 AATTACCAAAATATCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
4891198 AATTACCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
4891225 AATTACTAAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
4891252 AATTACCAAAATACCCCTA
1 AATTACCAAAATACCCCTA
4891271 ATTTACAAAA
Statistics
Matches: 112, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
26 3 0.03
27 105 0.94
28 4 0.04
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:4891291 original size:54 final size:52
Alignment explanation
Indices: 4891117--4891295 Score: 205
Period size: 54 Copynumber: 3.3 Consensus size: 52
4891107 TGTAGGATAG
*
4891117 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAA
1 AATTA-CAAAATA-CCCTAATTTGTAAAATTACCAAAATACCCCTAGTTTGTAA
* * * * *
4891171 AATTACCAAAATATCCCTAGTTTGTAAAATTACCGAAATACCACTGGTTTGTGA
1 AATTA-CAAAATA-CCCTAATTTGTAAAATTACCAAAATACCCCTAGTTTGTAA
* **
4891225 AATTACTAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAA
1 AATTAC-AAAATACCCT-AATTTGTAAAATTACCAAAATACCCCTAGTTTGTAA
*
4891279 AATTGCAGAAATACCCT
1 AATTACA-AAATACCCT
4891296 TGACTTTCTA
Statistics
Matches: 108, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
53 6 0.06
54 102 0.94
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (52 bp):
AATTACAAAATACCCTAATTTGTAAAATTACCAAAATACCCCTAGTTTGTAA
Found at i:4891345 original size:27 final size:27
Alignment explanation
Indices: 4891306--4891357 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
4891296 TGACTTTCTA
4891306 AAAATTATAGAAATACTATTGGTTTAC
1 AAAATTATAGAAATACTATTGGTTTAC
*
4891333 AAAATTACT-GAAATACTCTTGGTTT
1 AAAATTA-TAGAAATACTATTGGTTT
4891358 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (27 bp):
AAAATTATAGAAATACTATTGGTTTAC
Found at i:4892318 original size:25 final size:25
Alignment explanation
Indices: 4892285--4892354 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
4892275 AAGGAGTGCT
* *
4892285 AAAAGGGCTCTACCCCAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
**
4892310 AAAAGGGCTTTGCCCCAGTTTATTA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
4892335 GAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
4892355 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:4892367 original size:24 final size:23
Alignment explanation
Indices: 4892310--4892381 Score: 90
Period size: 25 Copynumber: 3.0 Consensus size: 23
4892300 CAGTTTACCA
4892310 AAAAGGGCTTTGCCCCAGTTTATT
1 AAAAGGGCTTTGCCCCAG-TTATT
4892334 AGAAAGGGCTTTGCCCCAGTTATT
1 A-AAAGGGCTTTGCCCCAGTTATT
**
4892358 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTTTGCC-CCAGTTAT
4892382 ATGATAAAGC
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
23 4 0.09
24 14 0.33
25 25 0.58
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTTGCCCCAGTTATT
Found at i:4892561 original size:42 final size:42
Alignment explanation
Indices: 4892502--4892635 Score: 250
Period size: 42 Copynumber: 3.2 Consensus size: 42
4892492 TAGTCTCCCC
4892502 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
*
4892544 AAATGGGCTTGCATACATTCATTGACATTACATATGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
*
4892586 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
4892628 AAATGGGC
1 AAATGGGC
4892636 CTAAGGGCCA
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 89 1.00
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:4892694 original size:31 final size:31
Alignment explanation
Indices: 4892659--4892773 Score: 196
Period size: 31 Copynumber: 3.7 Consensus size: 31
4892649 CGTTTACAGT
* *
4892659 AAAGGCTTCGGCCAAGTGATATGGTTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
4892690 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
4892721 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
4892752 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
4892774 TCAAGACTAA
Statistics
Matches: 81, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
30 5 0.06
31 76 0.94
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:4893710 original size:27 final size:27
Alignment explanation
Indices: 4893680--4893835 Score: 91
Period size: 27 Copynumber: 5.8 Consensus size: 27
4893670 GGCAAAACAG
*
4893680 TCATCTTACCATATAAGGGAAAAATAA
1 TCATTTTACCATATAAGGGAAAAATAA
* * *
4893707 TCATTTTACC-TCACAAGGGCAAAACAA
1 TCATTTTACCAT-ATAAGGGAAAAATAA
** *
4893734 TCATTTTACCACGTAAGGGAAAAATAG
1 TCATTTTACCATATAAGGGAAAAATAA
* * * * * * * * *
4893761 TTATTTAATCACACAGGGGTAATACAA
1 TCATTTTACCATATAAGGGAAAAATAA
* * * *
4893788 TCATTTTACCACA-AAGAGGCAAAACAG
1 TCATTTTACCATATAAG-GGAAAAATAA
*
4893815 TCATTTTACCACATAAGGGAA
1 TCATTTTACCATATAAGGGAA
4893836 GTCATTCCAT
Statistics
Matches: 97, Mismatches: 28, Indels: 8
0.73 0.21 0.06
Matches are distributed among these distances:
26 3 0.03
27 91 0.94
28 3 0.03
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.25
Consensus pattern (27 bp):
TCATTTTACCATATAAGGGAAAAATAA
Done.