Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 181 of 310
Found at i:58882161 original size:20 final size:20
Alignment explanation
Indices: 58882113--58882170 Score: 79
Period size: 20 Copynumber: 3.1 Consensus size: 20
58882103 TAATATCATA
58882113 TTAACACATAATTTACTATT
1 TTAACACATAATTTACTATT
58882133 TT---A-ATAATTTACTATT
1 TTAACACATAATTTACTATT
*
58882149 TTAACACATAATTTACTCTT
1 TTAACACATAATTTACTATT
58882169 TT
1 TT
58882171 TCTTTTTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
16 15 0.45
17 1 0.03
19 1 0.03
20 16 0.48
ACGTcount: A:0.36, C:0.14, G:0.00, T:0.50
Consensus pattern (20 bp):
TTAACACATAATTTACTATT
Found at i:58882189 original size:138 final size:137
Alignment explanation
Indices: 58882026--58882274 Score: 426
Period size: 138 Copynumber: 1.8 Consensus size: 137
58882016 AACCCTAGGA
** *
58882026 ACTCTTTTTGTTTTCTTTTTCTTTCAATTTTTGGTAACAAACATGGACATAACCATGTTTTCATG
1 ACTCTTTTTGTTTTCTTTTTCTTTCAATTTTCAGTAACAAACATGAACATAACCATGTTTTCATG
58882091 TTTTATTTTATTTAATATCATATTAACACATAATTTACTATTTTAATAATTTACTATTTTAACAC
66 TTTTATTTTATTTAATATCATATTAACACATAATTTACTATTTTAATAATTTACTATTTTAACAC
58882156 ATAATTT
131 ATAATTT
* * * *
58882163 ACTCTTTTTCTTTTTTTTTTTCTTTCAATTTTCAGTAACAAACATGAACGTAACCATGTTTTTAT
1 ACTCTTTTT-GTTTTCTTTTTCTTTCAATTTTCAGTAACAAACATGAACATAACCATGTTTTCAT
58882228 GTTTTATTTTATTTAATATCATATTAACACATAATTTACTATTTTAA
65 GTTTTATTTTATTTAATATCATATTAACACATAATTTACTATTTTAA
58882275 CCCTTTTAAT
Statistics
Matches: 104, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
137 9 0.09
138 95 0.91
ACGTcount: A:0.30, C:0.13, G:0.05, T:0.52
Consensus pattern (137 bp):
ACTCTTTTTGTTTTCTTTTTCTTTCAATTTTCAGTAACAAACATGAACATAACCATGTTTTCATG
TTTTATTTTATTTAATATCATATTAACACATAATTTACTATTTTAATAATTTACTATTTTAACAC
ATAATTT
Found at i:58882334 original size:138 final size:137
Alignment explanation
Indices: 58882059--58882334 Score: 299
Period size: 138 Copynumber: 2.0 Consensus size: 137
58882049 TCAATTTTTG
*
58882059 GTAACAAACATGGACATAACCATGTTTTCATGTTTTATTTTATTTAATATCATATTAACACATAA
1 GTAACAAACATGAACATAACCATGTTTTCATGTTTTATTTTATTTAATATCATATTAACACATAA
* * * *** * * * * *
58882124 TTTACTATTTTAATAATTTACTATTTTAACACATAATTTACTCTTTTTCTTTTTTTTTTTCTTTC
66 TTTACTATTTTAACAATTTAATATTTTAACACATAATTAACTCTTAGGC-TTTTTGTGTCCATCC
*
58882189 AATTTTCA
130 AAATTTCA
* *
58882197 GTAACAAACATGAACGTAACCATGTTTTTATGTTTTATTTTATTTAATATCATATTAACACATAA
1 GTAACAAACATGAACATAACCATGTTTTCATGTTTTATTTTATTTAATATCATATTAACACATAA
** * *
58882262 TTTACTATTTTAACCCTTTTAATTTCATTTAA-A-ATCTATTAAC-CTTAGGC-TTTTGTGTCCA
66 TTTACTATTTTAA-CAATTTAATAT--TTTAACACAT-AATTAACTCTTAGGCTTTTTGTGTCCA
58882323 TCCATAATTTCA
127 TCCA-AATTTCA
58882335 ATGGTATTAT
Statistics
Matches: 114, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
137 10 0.09
138 81 0.71
139 12 0.11
140 6 0.05
141 5 0.04
ACGTcount: A:0.32, C:0.15, G:0.05, T:0.48
Consensus pattern (137 bp):
GTAACAAACATGAACATAACCATGTTTTCATGTTTTATTTTATTTAATATCATATTAACACATAA
TTTACTATTTTAACAATTTAATATTTTAACACATAATTAACTCTTAGGCTTTTTGTGTCCATCCA
AATTTCA
Found at i:58889507 original size:17 final size:17
Alignment explanation
Indices: 58889485--58889519 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
58889475 CAAGACTATT
58889485 AAAAACAGGCTGTTATA
1 AAAAACAGGCTGTTATA
58889502 AAAAACAGGCTGTTATA
1 AAAAACAGGCTGTTATA
58889519 A
1 A
58889520 CCCCTGCCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.49, C:0.11, G:0.17, T:0.23
Consensus pattern (17 bp):
AAAAACAGGCTGTTATA
Found at i:58911524 original size:31 final size:31
Alignment explanation
Indices: 58911489--58911549 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
58911479 GCACTCCAAG
58911489 GCCTAAAAACGAGATATTCAACATTGCAATC
1 GCCTAAAAACGAGATATTCAACATTGCAATC
*
58911520 GCCTAAAAACTAGATATTCAACATTGCAAT
1 GCCTAAAAACGAGATATTCAACATTGCAAT
58911550 TTGTCTTACT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.43, C:0.21, G:0.11, T:0.25
Consensus pattern (31 bp):
GCCTAAAAACGAGATATTCAACATTGCAATC
Found at i:58916289 original size:22 final size:21
Alignment explanation
Indices: 58916264--58916317 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 21
58916254 GAGCACAGAT
58916264 GTGCTAATCAGAGAGCACTAA
1 GTGCTAATCAGAGAGCACTAA
58916285 CGTGCTAATAATCAGAGAGCACTAA
1 -GTGC---TAATCAGAGAGCACTAA
*
58916310 ATGCTAAT
1 GTGCTAAT
58916318 AATCAGAGAG
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
21 4 0.14
22 4 0.14
24 3 0.11
25 17 0.61
ACGTcount: A:0.39, C:0.19, G:0.20, T:0.22
Consensus pattern (21 bp):
GTGCTAATCAGAGAGCACTAA
Found at i:58916320 original size:27 final size:25
Alignment explanation
Indices: 58916268--58916333 Score: 107
Period size: 24 Copynumber: 2.7 Consensus size: 25
58916258 ACAGATGTGC
*
58916268 TAATCAGAGAGCACTAACGTGCTAA
1 TAATCAGAGAGCACTAACATGCTAA
58916293 TAATCAGAGAGCACTAA-ATGCTAA
1 TAATCAGAGAGCACTAACATGCTAA
*
58916317 TAATCAGAGAGCGCTAA
1 TAATCAGAGAGCACTAA
58916334 GGTTCCTTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
24 22 0.56
25 17 0.44
ACGTcount: A:0.42, C:0.18, G:0.20, T:0.20
Consensus pattern (25 bp):
TAATCAGAGAGCACTAACATGCTAA
Found at i:58916846 original size:7 final size:7
Alignment explanation
Indices: 58916834--58916863 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
58916824 TTTACCTATT
58916834 TATATAA
1 TATATAA
58916841 TATATAA
1 TATATAA
58916848 TATATAA
1 TATATAA
58916855 TATATAA
1 TATATAA
58916862 TA
1 TA
58916864 ATATTCTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
TATATAA
Found at i:58917854 original size:2 final size:2
Alignment explanation
Indices: 58917847--58917883 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
58917837 TTCCCTTTTT
58917847 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
58917884 TATATATATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:58918262 original size:5 final size:5
Alignment explanation
Indices: 58918245--58918287 Score: 54
Period size: 5 Copynumber: 8.8 Consensus size: 5
58918235 TTACCTATTT
*
58918245 ATATA ATAT- ATATA ATATA GTATA ATATA ATAT- ATAATA ATAT
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA AT-ATA ATAT
58918288 TCTTATTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
4 6 0.18
5 25 0.76
6 2 0.06
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:58918284 original size:10 final size:9
Alignment explanation
Indices: 58918244--58918287 Score: 58
Period size: 9 Copynumber: 5.1 Consensus size: 9
58918234 TTTACCTATT
58918244 TATATAATA
1 TATATAATA
58918253 TATATAATA
1 TATATAATA
58918262 TAGTATAATA
1 TA-TATAATA
58918272 TA-AT-ATA
1 TATATAATA
58918279 TA-ATAATA
1 TATATAATA
58918287 T
1 T
58918288 TCTTATTTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
7 7 0.21
8 6 0.18
9 11 0.33
10 9 0.27
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (9 bp):
TATATAATA
Found at i:58919943 original size:40 final size:40
Alignment explanation
Indices: 58919874--58920125 Score: 425
Period size: 40 Copynumber: 6.3 Consensus size: 40
58919864 TCTTCGAAAT
* * *
58919874 TTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGAC
* * **
58919913 TTAGCCCGGATATAGTCACTAGCATGAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGAC
58919953 TTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGAC
58919993 TTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGAC
58920033 TTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGAC
*
58920073 TTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGAGAC
1 TTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGAC
58920113 TTAGCCCGGATAT
1 TTAGCCCGGATAT
58920126 CATCCGAATA
Statistics
Matches: 201, Mismatches: 11, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
39 4 0.02
40 197 0.98
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGAC
Found at i:58923526 original size:13 final size:13
Alignment explanation
Indices: 58923508--58923534 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
58923498 ATAAAAGAAC
58923508 ATATAGAATACCT
1 ATATAGAATACCT
58923521 ATATAGAATACCT
1 ATATAGAATACCT
58923534 A
1 A
58923535 AAGGAGATAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.15, G:0.07, T:0.30
Consensus pattern (13 bp):
ATATAGAATACCT
Found at i:58926237 original size:22 final size:22
Alignment explanation
Indices: 58926209--58926260 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
58926199 TAATGAACAG
58926209 AGAGCACTGAAGTGCT-ATACAA
1 AGAGCACTGAAGTGCTAAT-CAA
* * *
58926231 AGAGCACAGATGTGCTAATCAG
1 AGAGCACTGAAGTGCTAATCAA
58926253 AGAGCACT
1 AGAGCACT
58926261 AACATGCTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
22 23 0.92
23 2 0.08
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.17
Consensus pattern (22 bp):
AGAGCACTGAAGTGCTAATCAA
Found at i:58926801 original size:7 final size:7
Alignment explanation
Indices: 58926784--58926832 Score: 50
Period size: 7 Copynumber: 7.1 Consensus size: 7
58926774 TTATCTATTT
*
58926784 ATATGAT
1 ATATAAT
58926791 ATAT-AT
1 ATATAAT
58926797 AATATAAT
1 -ATATAAT
58926805 ATATAAT
1 ATATAAT
58926812 A-AT-AT
1 ATATAAT
58926817 ATAATAAT
1 AT-ATAAT
58926825 ATATAAT
1 ATATAAT
58926832 A
1 A
58926833 ATATTCTTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
5 3 0.08
6 4 0.11
7 24 0.65
8 6 0.16
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (7 bp):
ATATAAT
Found at i:58926813 original size:10 final size:10
Alignment explanation
Indices: 58926800--58926836 Score: 74
Period size: 10 Copynumber: 3.7 Consensus size: 10
58926790 TATATATAAT
58926800 ATAATATATA
1 ATAATATATA
58926810 ATAATATATA
1 ATAATATATA
58926820 ATAATATATA
1 ATAATATATA
58926830 ATAATAT
1 ATAATAT
58926837 TCTTATTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (10 bp):
ATAATATATA
Found at i:58947698 original size:427 final size:427
Alignment explanation
Indices: 58946903--58947758 Score: 1712
Period size: 427 Copynumber: 2.0 Consensus size: 427
58946893 ACCCTCACCA
58946903 TAGGTTACCGCTTTGGCTACAAGTTCAAACATTCCATAATGGCCTGAATCTTTCGACTCGACAAA
1 TAGGTTACCGCTTTGGCTACAAGTTCAAACATTCCATAATGGCCTGAATCTTTCGACTCGACAAA
58946968 TGGTTGACGCAGCTGCTGGCGGAACCCTCAATAATAAAACACCTAAAAATGCCTATAAGTTTATT
66 TGGTTGACGCAGCTGCTGGCGGAACCCTCAATAATAAAACACCTAAAAATGCCTATAAGTTTATT
58947033 GAAGAGATGTCACTGAATAACTATCAGTGGCAAGTCATGAGGACTAAGCCAACTAAAACAGCAGG
131 GAAGAGATGTCACTGAATAACTATCAGTGGCAAGTCATGAGGACTAAGCCAACTAAAACAGCAGG
58947098 CGTTTATAATGTTGATTTGGTTACTATGTTGTCAAACTAGGTAGAACTTCTAAATAAAAAGATTG
196 CGTTTATAATGTTGATTTGGTTACTATGTTGTCAAACTAGGTAGAACTTCTAAATAAAAAGATTG
58947163 ATGGTTTTCTTAGTTCTTCACAAGTTCACCCAGTAATACAGTGTGAAGCAAGTAGAGGTGGATCA
261 ATGGTTTTCTTAGTTCTTCACAAGTTCACCCAGTAATACAGTGTGAAGCAAGTAGAGGTGGATCA
58947228 AGCAATTCAGAATACCAACCTTATGGCCACAATATGGATAATGAGAAATTAAATTATATGGGTAA
326 AGCAATTCAGAATACCAACCTTATGGCCACAATATGGATAATGAGAAATTAAATTATATGGGTAA
58947293 TAATCCTCGATCTCAAAACAATCCATATAGTAACACT
391 TAATCCTCGATCTCAAAACAATCCATATAGTAACACT
58947330 TAGGTTACCGCTTTGGCTACAAGTTCAAACATTCCATAATGGCCTGAATCTTTCGACTCGACAAA
1 TAGGTTACCGCTTTGGCTACAAGTTCAAACATTCCATAATGGCCTGAATCTTTCGACTCGACAAA
58947395 TGGTTGACGCAGCTGCTGGCGGAACCCTCAATAATAAAACACCTAAAAATGCCTATAAGTTTATT
66 TGGTTGACGCAGCTGCTGGCGGAACCCTCAATAATAAAACACCTAAAAATGCCTATAAGTTTATT
58947460 GAAGAGATGTCACTGAATAACTATCAGTGGCAAGTCATGAGGACTAAGCCAACTAAAACAGCAGG
131 GAAGAGATGTCACTGAATAACTATCAGTGGCAAGTCATGAGGACTAAGCCAACTAAAACAGCAGG
58947525 CGTTTATAATGTTGATTTGGTTACTATGTTGTCAAACTAGGTAGAACTTCTAAATAAAAAGATTG
196 CGTTTATAATGTTGATTTGGTTACTATGTTGTCAAACTAGGTAGAACTTCTAAATAAAAAGATTG
58947590 ATGGTTTTCTTAGTTCTTCACAAGTTCACCCAGTAATACAGTGTGAAGCAAGTAGAGGTGGATCA
261 ATGGTTTTCTTAGTTCTTCACAAGTTCACCCAGTAATACAGTGTGAAGCAAGTAGAGGTGGATCA
58947655 AGCAATTCAGAATACCAACCTTATGGCCACAATATGGATAATGAGAAATTAAATTATATGGGTAA
326 AGCAATTCAGAATACCAACCTTATGGCCACAATATGGATAATGAGAAATTAAATTATATGGGTAA
58947720 TAATCCTCGATCTCAAAACAATCCATATAGTAACACT
391 TAATCCTCGATCTCAAAACAATCCATATAGTAACACT
58947757 TA
1 TA
58947759 CAATGCATAT
Statistics
Matches: 429, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
427 429 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.28
Consensus pattern (427 bp):
TAGGTTACCGCTTTGGCTACAAGTTCAAACATTCCATAATGGCCTGAATCTTTCGACTCGACAAA
TGGTTGACGCAGCTGCTGGCGGAACCCTCAATAATAAAACACCTAAAAATGCCTATAAGTTTATT
GAAGAGATGTCACTGAATAACTATCAGTGGCAAGTCATGAGGACTAAGCCAACTAAAACAGCAGG
CGTTTATAATGTTGATTTGGTTACTATGTTGTCAAACTAGGTAGAACTTCTAAATAAAAAGATTG
ATGGTTTTCTTAGTTCTTCACAAGTTCACCCAGTAATACAGTGTGAAGCAAGTAGAGGTGGATCA
AGCAATTCAGAATACCAACCTTATGGCCACAATATGGATAATGAGAAATTAAATTATATGGGTAA
TAATCCTCGATCTCAAAACAATCCATATAGTAACACT
Found at i:58952151 original size:17 final size:18
Alignment explanation
Indices: 58952109--58952144 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
58952099 TTTTAAAAGG
*
58952109 AAACCAATTGAATCTTAA
1 AAACAAATTGAATCTTAA
58952127 AAACAAATT-AATCTTAA
1 AAACAAATTGAATCTTAA
58952144 A
1 A
58952145 GAAAAATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.56, C:0.14, G:0.03, T:0.28
Consensus pattern (18 bp):
AAACAAATTGAATCTTAA
Found at i:58957754 original size:15 final size:15
Alignment explanation
Indices: 58957734--58957763 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
58957724 TTTGCAGTTA
58957734 CCTTGGATTAGGTTC
1 CCTTGGATTAGGTTC
*
58957749 CCTTGGGTTAGGTTC
1 CCTTGGATTAGGTTC
58957764 GGTATTACTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.20, G:0.30, T:0.40
Consensus pattern (15 bp):
CCTTGGATTAGGTTC
Found at i:58962212 original size:24 final size:23
Alignment explanation
Indices: 58962135--58962218 Score: 62
Period size: 24 Copynumber: 3.5 Consensus size: 23
58962125 ACAGCTCAAA
* *
58962135 AGAGCGTCCCATTATTAGCTC-TC
1 AGAGCTTCCCGTTA-TAGCTCTTC
* *
58962158 AGGAGCTTCCCGTTATATGGTTCTTG
1 A-GAGCTTCCCGTTATA--GCTCTTC
*
58962184 TGAGCTTCCCGTTGATAGCTCTTC
1 AGAGCTTCCCGTT-ATAGCTCTTC
*
58962208 AGAGCATCCCG
1 AGAGCTTCCCG
58962219 ATTGGTTGTG
Statistics
Matches: 47, Mismatches: 9, Indels: 9
0.72 0.14 0.14
Matches are distributed among these distances:
23 3 0.06
24 25 0.53
25 15 0.32
26 4 0.09
ACGTcount: A:0.18, C:0.27, G:0.23, T:0.32
Consensus pattern (23 bp):
AGAGCTTCCCGTTATAGCTCTTC
Found at i:58962357 original size:18 final size:18
Alignment explanation
Indices: 58962334--58962380 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
58962324 CCCCTTGCCC
*
58962334 GAGTCCGAGGCCAGGACA
1 GAGTCCGAGGCCAAGACA
*
58962352 GAGTCCGAGACCAAGACA
1 GAGTCCGAGGCCAAGACA
* *
58962370 GGGTACGAGGC
1 GAGTCCGAGGC
58962381 ATTACTTGAC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.38, T:0.06
Consensus pattern (18 bp):
GAGTCCGAGGCCAAGACA
Found at i:58964398 original size:50 final size:49
Alignment explanation
Indices: 58964321--58964605 Score: 333
Period size: 48 Copynumber: 5.8 Consensus size: 49
58964311 AAAAGGGTAA
* *
58964321 AATGCCGATGTCATGTCCCGGACATGGTCTTACACTGGCTCTCATATATC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-ATC
*
58964371 AGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATACATC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-ATC
** * * *
58964421 GGTGCCGATGTCATATCCCAGACATGGTCTTACACTGGCTCACATAA-C
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATC
* ** * * * * *
58964469 AATGTCGATGCCATGTTTCAAACATCGTCTTACACTGGCTCGCATATTG
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATC
* * *
58964518 AA-GCCGATGCCATGTCCCAGTCATGGTCATACACTAGCTCTCATAA-C
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATC
* * *
58964565 AATGTCGATGCCATGTTCCAAACATGGTCTTACACTGGCTC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC
58964606 ACACATAACC
Statistics
Matches: 196, Mismatches: 37, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
47 2 0.01
48 103 0.53
49 3 0.02
50 88 0.45
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (49 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATC
Found at i:58964552 original size:96 final size:97
Alignment explanation
Indices: 58964324--58964605 Score: 377
Period size: 96 Copynumber: 2.9 Consensus size: 97
58964314 AGGGTAAAAT
* * * *
58964324 GCCGATGTCATGTCCCGGACATGGTCTTACACTGGCTCTCATATATCAGTGCCGATGCCATGTCC
1 GCCGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-A-CAATGTCGATGCCATGTTC
* * **
58964389 CAGACATGGTCTTACACTGGCTCTCATACATCGGT
64 CAAACATGGTCTTACACTGGCTCGCATA-ATCGAA
* * *
58964424 GCCGATGTCATATCCCAGACATGGTCTTACACTGGCTCACATAACAATGTCGATGCCATGTTTCA
1 GCCGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACAATGTCGATGCCATGTTCCA
* *
58964489 AACATCGTCTTACACTGGCTCGCAT-ATTGAA
66 AACATGGTCTTACACTGGCTCGCATAATCGAA
* * * *
58964520 GCCGATGCCATGTCCCAGTCATGGTCATACACTAGCTCTCATAACAATGTCGATGCCATGTTCCA
1 GCCGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACAATGTCGATGCCATGTTCCA
58964585 AACATGGTCTTACACTGGCTC
66 AACATGGTCTTACACTGGCTC
58964606 ACACATAACC
Statistics
Matches: 161, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
96 81 0.50
98 39 0.24
99 1 0.01
100 40 0.25
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (97 bp):
GCCGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACAATGTCGATGCCATGTTCCA
AACATGGTCTTACACTGGCTCGCATAATCGAA
Found at i:58966223 original size:25 final size:25
Alignment explanation
Indices: 58966195--58966270 Score: 73
Period size: 25 Copynumber: 3.0 Consensus size: 25
58966185 TCGTTATACA
58966195 GCTCGAATGAGCTTCCCGTTACATG
1 GCTCGAATGAGCTTCCCGTTACATG
* * **
58966220 GCTC-ACGTGACCTTCCCGTTTTATG
1 GCTCGA-ATGAGCTTCCCGTTACATG
**
58966245 GCTCGAAAAAGCTTCCCGTTTACATG
1 GCTCGAATGAGCTTCCCG-TTACATG
58966271 TCTGCATGAG
Statistics
Matches: 38, Mismatches: 10, Indels: 5
0.72 0.19 0.09
Matches are distributed among these distances:
24 1 0.03
25 31 0.82
26 6 0.16
ACGTcount: A:0.20, C:0.29, G:0.21, T:0.30
Consensus pattern (25 bp):
GCTCGAATGAGCTTCCCGTTACATG
Found at i:58966618 original size:40 final size:40
Alignment explanation
Indices: 58966574--58966649 Score: 152
Period size: 40 Copynumber: 1.9 Consensus size: 40
58966564 ATGTGTTTAG
58966574 GCTATTGGCTAAATTGCTTTGGATGTATTGTGTAAGTTTT
1 GCTATTGGCTAAATTGCTTTGGATGTATTGTGTAAGTTTT
58966614 GCTATTGGCTAAATTGCTTTGGATGTATTGTGTAAG
1 GCTATTGGCTAAATTGCTTTGGATGTATTGTGTAAG
58966650 CTTACCTTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.21, C:0.08, G:0.26, T:0.45
Consensus pattern (40 bp):
GCTATTGGCTAAATTGCTTTGGATGTATTGTGTAAGTTTT
Found at i:58967774 original size:14 final size:14
Alignment explanation
Indices: 58967755--58967781 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
58967745 TCAATCAATC
58967755 GAATTTTCCCAAAA
1 GAATTTTCCCAAAA
58967769 GAATTTTCCCAAA
1 GAATTTTCCCAAA
58967782 TTTTTCTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (14 bp):
GAATTTTCCCAAAA
Found at i:58994237 original size:21 final size:21
Alignment explanation
Indices: 58994213--58994277 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
58994203 AACGAAAACC
*
58994213 CATAAGGGTTGAACGGAAGCT
1 CATAAGGGTTGAACAGAAGCT
* * *
58994234 CATAAGAGCTGAACAGATACCT
1 CATAAGGGTTGAACAGA-AGCT
*
58994256 -ATAAGGGTTAAACAGAAGCT
1 CATAAGGGTTGAACAGAAGCT
58994276 CA
1 CA
58994278 AAATAGCTAA
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
20 3 0.09
21 28 0.82
22 3 0.09
ACGTcount: A:0.40, C:0.17, G:0.25, T:0.18
Consensus pattern (21 bp):
CATAAGGGTTGAACAGAAGCT
Found at i:58998408 original size:26 final size:26
Alignment explanation
Indices: 58998372--58998421 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
58998362 TCTAATTCTT
* *
58998372 AAAAAACCCTAACCCTAACAAAATTA
1 AAAAAACCCTAACCATAAAAAAATTA
*
58998398 AAAAAATCCTAACCATAAAAAAAT
1 AAAAAACCCTAACCATAAAAAAAT
58998422 CCAATGACTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.62, C:0.22, G:0.00, T:0.16
Consensus pattern (26 bp):
AAAAAACCCTAACCATAAAAAAATTA
Found at i:58999761 original size:27 final size:26
Alignment explanation
Indices: 58999718--58999770 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
58999708 TTATTTTTTA
* * *
58999718 AAAAATGTAATTTTATATTTTTATTT
1 AAAAATGGAATTATATATTTTAATTT
58999744 AAAAATGGAATATATATATTTTAATTT
1 AAAAATGGAAT-TATATATTTTAATTT
58999771 TTTATGCTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (26 bp):
AAAAATGGAATTATATATTTTAATTT
Found at i:58999765 original size:26 final size:25
Alignment explanation
Indices: 58999709--58999766 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 25
58999699 TCATAATTTT
* *
58999709 TATTTT-TTAAAAAATGTAATTTTA
1 TATTTTATTAAAAAATGGAATTATA
*
58999733 TATTTTTATTTAAAAATGGAATATATA
1 TA-TTTTATTAAAAAATGGAAT-TATA
58999760 TATTTTA
1 TATTTTA
58999767 ATTTTTTATG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
24 2 0.07
25 4 0.14
26 17 0.61
27 5 0.18
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.53
Consensus pattern (25 bp):
TATTTTATTAAAAAATGGAATTATA
Found at i:59001385 original size:18 final size:18
Alignment explanation
Indices: 59001362--59001438 Score: 68
Period size: 18 Copynumber: 4.3 Consensus size: 18
59001352 TATTACAAAA
59001362 AAAAATTAAAATATTTAT
1 AAAAATTAAAATATTTAT
* *
59001380 AAAAATTAAAAAATTCAT
1 AAAAATTAAAATATTTAT
*** *
59001398 -ATTTTTAAAA-AATTAT
1 AAAAATTAAAATATTTAT
*
59001414 AAAAATTAAAATATATAT
1 AAAAATTAAAATATTTAT
59001432 ATAAAAT
1 A-AAAAT
59001439 AATTATAAAA
Statistics
Matches: 44, Mismatches: 12, Indels: 5
0.72 0.20 0.08
Matches are distributed among these distances:
16 4 0.09
17 14 0.32
18 21 0.48
19 5 0.11
ACGTcount: A:0.62, C:0.01, G:0.00, T:0.36
Consensus pattern (18 bp):
AAAAATTAAAATATTTAT
Found at i:59001451 original size:11 final size:12
Alignment explanation
Indices: 59001420--59001453 Score: 52
Period size: 11 Copynumber: 2.8 Consensus size: 12
59001410 TTATAAAAAT
59001420 TAAAATATATATA
1 TAAAATA-ATATA
59001433 TAAAATAAT-TA
1 TAAAATAATATA
59001444 TAAAATAATA
1 TAAAATAATA
59001454 ATTTTTGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 11 0.55
12 2 0.10
13 7 0.35
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (12 bp):
TAAAATAATATA
Found at i:59011347 original size:13 final size:13
Alignment explanation
Indices: 59011329--59011353 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
59011319 TATTATATAA
59011329 TTGTGTGTATATG
1 TTGTGTGTATATG
59011342 TTGTGTGTATAT
1 TTGTGTGTATAT
59011354 ATATTATATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.28, T:0.56
Consensus pattern (13 bp):
TTGTGTGTATATG
Found at i:59016437 original size:11 final size:11
Alignment explanation
Indices: 59016421--59016445 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
59016411 TGACGAAACT
59016421 TTAATACTAGC
1 TTAATACTAGC
59016432 TTAATACTAGC
1 TTAATACTAGC
59016443 TTA
1 TTA
59016446 CTAAACGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (11 bp):
TTAATACTAGC
Found at i:59028434 original size:38 final size:38
Alignment explanation
Indices: 59028353--59028619 Score: 279
Period size: 38 Copynumber: 6.9 Consensus size: 38
59028343 GAATCTAGTC
* * *
59028353 ACCAGCAC-AAACCTGCGGGACTTTAAGCTCAGATATAAT
1 ACCAGCACGAAGCCTGCGGGA-TTTAA-CCCGGATATAAT
* * *
59028392 ACCAGCACTAGGCTTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
* *
59028430 ACCAGCACGAAGCCTGTGGGATTTAACCCGGATATATT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
*
59028468 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
*
59028506 ACCAGCACGAAGCTTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
* * * * *
59028544 TCTAGCA-TATAGCCTGTGGGTTTTTAAGCCCGGATATAAT
1 ACCAGCACGA-AGCCTGCGGG-ATTTAA-CCCGGATATAAT
* * *
59028584 TCCAGCA-TATAGCCTGCGGGTCTTTAAGCCCGGATA
1 ACCAGCACGA-AGCCTGCGGG-ATTTAA-CCCGGATA
59028620 CACATCAAAT
Statistics
Matches: 202, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
37 1 0.00
38 129 0.64
39 18 0.09
40 54 0.27
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
Found at i:59028525 original size:114 final size:117
Alignment explanation
Indices: 59028353--59028619 Score: 339
Period size: 114 Copynumber: 2.3 Consensus size: 117
59028343 GAATCTAGTC
* * * * *
59028353 ACCAGCACAAACCTGCGGGACTTTAAGCTCAGATATAATACCAGCACTAGGCTTGCGGGATTTAA
1 ACCAGCACAAGCCTGCGGGA-TTTAAGCCCGGATATAATACCAGCACGAAGCTTGCGGGATTTAA
59028418 CCCGGATATAATACCAGCACGA-AGCCTGTGGG-ATTTAA-CCCGGATAT-ATT
65 CCCGGATATAATACCAGCA-GATAGCCTGTGGGTATTTAAGCCCGGATATAATT
*
59028468 ACCAGCACGAAGCCTGCGGGATTTAA-CCCGGATATATTACCAGCACGAAGCTTGCGGGATTTAA
1 ACCAGCAC-AAGCCTGCGGGATTTAAGCCCGGATATAATACCAGCACGAAGCTTGCGGGATTTAA
* * * *
59028532 CCCGGATATAATTCTAGCATATAGCCTGTGGGTTTTTAAGCCCGGATATAATT
65 CCCGGATATAATACCAGCAGATAGCCTGTGGGTATTTAAGCCCGGATATAATT
* *
59028585 -CCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATA
1 ACCAGCACA-AGCCTGCGGG-ATTTAAGCCCGGATA
59028620 CACATCAAAT
Statistics
Matches: 132, Mismatches: 12, Indels: 13
0.84 0.08 0.08
Matches are distributed among these distances:
113 1 0.01
114 60 0.45
115 19 0.14
116 36 0.27
117 8 0.06
118 8 0.06
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (117 bp):
ACCAGCACAAGCCTGCGGGATTTAAGCCCGGATATAATACCAGCACGAAGCTTGCGGGATTTAAC
CCGGATATAATACCAGCAGATAGCCTGTGGGTATTTAAGCCCGGATATAATT
Found at i:59031551 original size:19 final size:19
Alignment explanation
Indices: 59031527--59031564 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
59031517 ATGGTTGAGA
*
59031527 TTGGTTTGAATTCCTATTG
1 TTGGTTTGAATGCCTATTG
59031546 TTGGTTTGAATGCCTATTG
1 TTGGTTTGAATGCCTATTG
59031565 ATGTTATGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.16, C:0.11, G:0.24, T:0.50
Consensus pattern (19 bp):
TTGGTTTGAATGCCTATTG
Found at i:59044978 original size:154 final size:154
Alignment explanation
Indices: 59044698--59045173 Score: 934
Period size: 154 Copynumber: 3.1 Consensus size: 154
59044688 TATCAAGACA
59044698 ATAACATTAAATTACACATTGCCTTATTAAAAATCATGTGAACTTACAATTTCCCATAATATCCA
1 ATAACATTAAATTACACATTGCCTTATTAAAAATCATGTGAACTTACAATTTCCCATAATATCCA
59044763 TAATCATAGAAATCACATTTATGTATGATAATTCAATGCACTTCATGTACCATAGTCATATTTTT
66 TAATCATAGAAATCACATTTATGTATGATAATTCAATGCACTTCATGTACCATAGTCATATTTTT
59044828 AAATCAATTCATAAACTTGGCACC
131 AAATCAATTCATAAACTTGGCACC
59044852 ATAACATTAAATTACACATTGCCTTATTAAAAATCATGTGAACTTACAATTTCCCATAATATCCA
1 ATAACATTAAATTACACATTGCCTTATTAAAAATCATGTGAACTTACAATTTCCCATAATATCCA
59044917 TAATCATAGAAATCACATTTATGTATGATAATTCAATGCACTTCATGTACCATAGTCATATTTTT
66 TAATCATAGAAATCACATTTATGTATGATAATTCAATGCACTTCATGTACCATAGTCATATTTTT
59044982 AAATCAATTCATAAACTTGGCACC
131 AAATCAATTCATAAACTTGGCACC
59045006 ATAACATTAAATTACACATTGCCTTATTAAAAATCATGTGAACTTACAATTTCCCATAATATCCA
1 ATAACATTAAATTACACATTGCCTTATTAAAAATCATGTGAACTTACAATTTCCCATAATATCCA
59045071 TAATCATAGAAATCACATTTATGTATGATAATTCAATGCACTTCATGTACCATAGTCATATTTTT
66 TAATCATAGAAATCACATTTATGTATGATAATTCAATGCACTTCATGTACCATAGTCATATTTTT
59045136 AAATCAATTCATAAACTTGGCACC
131 AAATCAATTCATAAACTTGGCACC
*
59045160 ATAATCATTTAATT
1 ATAA-CATTAAATT
59045174 TAACATAATT
Statistics
Matches: 320, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
154 312 0.98
155 8 0.03
ACGTcount: A:0.39, C:0.18, G:0.07, T:0.36
Consensus pattern (154 bp):
ATAACATTAAATTACACATTGCCTTATTAAAAATCATGTGAACTTACAATTTCCCATAATATCCA
TAATCATAGAAATCACATTTATGTATGATAATTCAATGCACTTCATGTACCATAGTCATATTTTT
AAATCAATTCATAAACTTGGCACC
Found at i:59058949 original size:58 final size:58
Alignment explanation
Indices: 59058863--59058975 Score: 208
Period size: 58 Copynumber: 1.9 Consensus size: 58
59058853 CTTTCTTTTA
*
59058863 TTTAGTTTAATCTAAAAATGTTTGCTATGTGTTCTTTGTTCTTGCTTACAACAATTTC
1 TTTAGTTTAATATAAAAATGTTTGCTATGTGTTCTTTGTTCTTGCTTACAACAATTTC
*
59058921 TTTAGTTTAATATAAAAATGTTTGCTATGTGTTCTTTGTTCTTGTTTACAACAAT
1 TTTAGTTTAATATAAAAATGTTTGCTATGTGTTCTTTGTTCTTGCTTACAACAAT
59058976 GTTAACTTAA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
58 53 1.00
ACGTcount: A:0.26, C:0.12, G:0.12, T:0.50
Consensus pattern (58 bp):
TTTAGTTTAATATAAAAATGTTTGCTATGTGTTCTTTGTTCTTGCTTACAACAATTTC
Found at i:59085913 original size:14 final size:14
Alignment explanation
Indices: 59085894--59085920 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
59085884 TATCAAGACA
59085894 ATAATTAAGAACAC
1 ATAATTAAGAACAC
59085908 ATAATTAAGAACA
1 ATAATTAAGAACA
59085921 AGTCAAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.11, G:0.07, T:0.22
Consensus pattern (14 bp):
ATAATTAAGAACAC
Found at i:59089905 original size:64 final size:64
Alignment explanation
Indices: 59089824--59090007 Score: 167
Period size: 67 Copynumber: 2.8 Consensus size: 64
59089814 AGACATTATG
* *
59089824 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
** * * * * * *
59089888 ATGTAGCTAGGTCGCATGCATGGTTCCAAGTGAAGAACACCATGTAGACAATAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
59089953 AA
63 AA
* * * **
59089955 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTTACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
59090008 CGAACTATAT
Statistics
Matches: 93, Mismatches: 22, Indels: 11
0.74 0.17 0.09
Matches are distributed among these distances:
62 1 0.01
63 17 0.18
64 20 0.22
65 8 0.09
66 15 0.16
67 30 0.32
68 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:59092751 original size:27 final size:26
Alignment explanation
Indices: 59092695--59092751 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
59092685 CAACCTTAAC
* * *
59092695 CCTAGGGGTATATCGGTAATTTTGCT
1 CCTAGGGGTAAATCGGTAATTTTCCA
*
59092721 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCGGT-AATTTTCCA
59092748 CCTA
1 CCTA
59092752 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCGGTAATTTTCCA
Found at i:59095040 original size:25 final size:26
Alignment explanation
Indices: 59094985--59095046 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 26
59094975 ATAATTATAA
*
59094985 TAATAATAATAATTTTATAAATATATC
1 TAATAATAA-AAATTTATAAATATATC
* * *
59095012 TAATCATAAAAATTTA-AAATATCTG
1 TAATAATAAAAATTTATAAATATATC
59095037 TAATAATAAA
1 TAATAATAAA
59095047 TACAGTAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
25 16 0.53
26 6 0.20
27 8 0.27
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.39
Consensus pattern (26 bp):
TAATAATAAAAATTTATAAATATATC
Found at i:59097825 original size:27 final size:27
Alignment explanation
Indices: 59097778--59097829 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
59097768 TATCTGATAT
* *
59097778 TGATTCTGTATTGGGCTTAGGCCCACC
1 TGATTCTGTAATGGGCATAGGCCCACC
59097805 TGATTCTGTTAATGGG-ATAGGCCCA
1 TGATTCTG-TAATGGGCATAGGCCCA
59097830 ACTGTTACTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 16 0.73
28 6 0.27
ACGTcount: A:0.19, C:0.21, G:0.27, T:0.33
Consensus pattern (27 bp):
TGATTCTGTAATGGGCATAGGCCCACC
Found at i:59105689 original size:27 final size:28
Alignment explanation
Indices: 59105649--59105701 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
59105639 CACCCCAAGT
*
59105649 TTGGCACTTTTAAGG-AAACAACACCTA
1 TTGGCACTTGTAAGGTAAACAACACCTA
*
59105676 TTGGCACTTGTAAGGTAAACAGCACC
1 TTGGCACTTGTAAGGTAAACAACACC
59105702 CGATTAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 14 0.61
28 9 0.39
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.25
Consensus pattern (28 bp):
TTGGCACTTGTAAGGTAAACAACACCTA
Found at i:59122933 original size:40 final size:40
Alignment explanation
Indices: 59122874--59123326 Score: 252
Period size: 40 Copynumber: 11.4 Consensus size: 40
59122864 ACCCTGAATT
* *
59122874 CAATCACCAACACAAAGCCTACGGGACTTTAAGCTCGGATA
1 CAAT-ACCAGCACGAAGCCTACGGGACTTTAAGCTCGGATA
* * * * * *
59122915 TAGTACCAGTACGAAGCCTAC-GGACCTTAAGTTCGAATA
1 CAATACCAGCACGAAGCCTACGGGACTTTAAGCTCGGATA
* * *
59122954 TAGTACCAGCACGAAGCCTA-TGGA-TCTTAAG-TCAGGATA
1 CAATACCAGCACGAAGCCTACGGGACT-TTAAGCTC-GGATA
* * *
59122993 CAATTCCAGCATGAAGCCTACGGGTCTTTAAGC-CGAGATA
1 CAATACCAGCACGAAGCCTACGGGACTTTAAGCTCG-GATA
* *** * *
59123033 CAATTCCAGCACGAAGCCTGTAGGTCTTTAAGCCCGGATA
1 CAATACCAGCACGAAGCCTACGGGACTTTAAGCTCGGATA
* * *
59123073 CAA-ATCAGCACGAAGCCTGC-GGACCTTAAG-TCCGGATA
1 CAATACCAGCACGAAGCCTACGGGACTTTAAGCT-CGGATA
* * * *
59123111 CAATTCCAGCACAAAGCCTGCGGGTCTTTAAGC-CTGGATA
1 CAATACCAGCACGAAGCCTACGGGACTTTAAGCTC-GGATA
* * * * * * *
59123151 TAATTCCAGCA-TATAGCCTGCGGGTCTTTAAGCCCGAATA
1 CAATACCAGCACGA-AGCCTACGGGACTTTAAGCTCGGATA
* * *
59123191 CAATTCCAGCACGAAGCCTGC-GGACCTTAAG-TCCGGATA
1 CAATACCAGCACGAAGCCTACGGGACTTTAAGCT-CGGATA
* * * * *
59123230 CAATTCCAGCAC-AACGCCTGCGGGTCTTTACA-CCCGGACA
1 CAATACCAGCACGAA-GCCTACGGGACTTTA-AGCTCGGATA
* * * * * * *
59123270 TAATTCCAGCA-TATAGCCTGCGAGTCTTTAAGCCCGGATA
1 CAATACCAGCACGA-AGCCTACGGGACTTTAAGCTCGGATA
*
59123310 CAATTCCAGCACGAAGC
1 CAATACCAGCACGAAGC
59123327 TTGCGGACCT
Statistics
Matches: 337, Mismatches: 50, Indels: 51
0.77 0.11 0.12
Matches are distributed among these distances:
38 21 0.06
39 125 0.37
40 181 0.54
41 10 0.03
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (40 bp):
CAATACCAGCACGAAGCCTACGGGACTTTAAGCTCGGATA
Found at i:59122955 original size:39 final size:39
Alignment explanation
Indices: 59122879--59122985 Score: 133
Period size: 39 Copynumber: 2.7 Consensus size: 39
59122869 GAATTCAATC
* * * * *
59122879 ACCAACACAAAGCCTACGGGACTTTAAGCTCGGATATAGT
1 ACCAGCACGAAGCCTAC-GGACCTTAAGTTCGAATATAGT
*
59122919 ACCAGTACGAAGCCTACGGACCTTAAGTTCGAATATAGT
1 ACCAGCACGAAGCCTACGGACCTTAAGTTCGAATATAGT
* *
59122958 ACCAGCACGAAGCCTATGGATCTTAAGT
1 ACCAGCACGAAGCCTACGGACCTTAAGT
59122986 CAGGATACAA
Statistics
Matches: 58, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
39 44 0.76
40 14 0.24
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.21
Consensus pattern (39 bp):
ACCAGCACGAAGCCTACGGACCTTAAGTTCGAATATAGT
Found at i:59123002 original size:39 final size:40
Alignment explanation
Indices: 59122959--59123333 Score: 385
Period size: 40 Copynumber: 9.5 Consensus size: 40
59122949 GAATATAGTA
** * *
59122959 CCAGCACGAAGCCTATGGATC-TTAAGTCAGGATACAATT
1 CCAGCACGAAGCCTGCGGATCTTTAAGCCCGGATACAATT
* * *
59122998 CCAGCATGAAGCCTACGGGTCTTTAAG-CCGAGATACAATT
1 CCAGCACGAAGCCTGCGGATCTTTAAGCCCG-GATACAATT
* *
59123038 CCAGCACGAAGCCTGTAGG-TCTTTAAGCCCGGATACAAAT
1 CCAGCACGAAGCCTG-CGGATCTTTAAGCCCGGATACAATT
* *
59123078 -CAGCACGAAGCCTGCGGA-CCTTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGATCTTTAAGCCCGGATACAATT
* * * *
59123116 CCAGCACAAAGCCTGCGGGTCTTTAAGCCTGGATATAATT
1 CCAGCACGAAGCCTGCGGATCTTTAAGCCCGGATACAATT
* * *
59123156 CCAGCA-TATAGCCTGCGGGTCTTTAAGCCCGAATACAATT
1 CCAGCACGA-AGCCTGCGGATCTTTAAGCCCGGATACAATT
* *
59123196 CCAGCACGAAGCCTGCGGA-CCTTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGATCTTTAAGCCCGGATACAATT
* * *
59123235 CCAGCAC-AACGCCTGCGGGTCTTTACA-CCCGGACATAATT
1 CCAGCACGAA-GCCTGCGGATCTTTA-AGCCCGGATACAATT
*
59123275 CCAGCA-TATAGCCTGC-GAGTCTTTAAGCCCGGATACAATT
1 CCAGCACGA-AGCCTGCGGA-TCTTTAAGCCCGGATACAATT
*
59123315 CCAGCACGAAGCTTGCGGA
1 CCAGCACGAAGCCTGCGGA
59123334 CCTTAAGTTT
Statistics
Matches: 281, Mismatches: 37, Indels: 34
0.80 0.11 0.10
Matches are distributed among these distances:
38 21 0.07
39 85 0.30
40 164 0.58
41 11 0.04
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (40 bp):
CCAGCACGAAGCCTGCGGATCTTTAAGCCCGGATACAATT
Found at i:59123046 original size:79 final size:81
Alignment explanation
Indices: 59122959--59123332 Score: 389
Period size: 79 Copynumber: 4.7 Consensus size: 81
59122949 GAATATAGTA
** * * *
59122959 CCAGCACGAAGCCTATGGATC-TTAAGTCAGGATACAATTCCAGCATGAAGCCTACGGGTCTTTA
1 CCAGCACGAAGCCTGCGGATCTTTAAGCCCGGATACAATTCCAGCATGAAGCCTGCGGGTCTTTA
59123023 AG-CCGAGATACAATT
66 AGCCCGAGATACAATT
* * * * *
59123038 CCAGCACGAAGCCTGTAGG-TCTTTAAGCCCGGATACAAAT-CAGCACGAAGCCTGC-GGACCTT
1 CCAGCACGAAGCCTG-CGGATCTTTAAGCCCGGATACAATTCCAGCATGAAGCCTGCGGGTCTTT
*
59123100 AAGTCCG-GATACAATT
65 AAGCCCGAGATACAATT
* * * *
59123116 CCAGCACAAAGCCTGCGGGTCTTTAAGCCTGGATATAATTCCAGCAT-ATAGCCTGCGGGTCTTT
1 CCAGCACGAAGCCTGCGGATCTTTAAGCCCGGATACAATTCCAGCATGA-AGCCTGCGGGTCTTT
59123180 AAGCCCGA-ATACAATT
65 AAGCCCGAGATACAATT
* * *
59123196 CCAGCACGAAGCCTGCGGA-CCTTAAGTCCGGATACAATTCCAGCA-CAACGCCTGCGGGTCTTT
1 CCAGCACGAAGCCTGCGGATCTTTAAGCCCGGATACAATTCCAGCATGAA-GCCTGCGGGTCTTT
* *
59123259 ACA-CCCG-GACATAATT
65 A-AGCCCGAGATACAATT
* * *
59123275 CCAGCA-TATAGCCTGC-GAGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCTTGCGG
1 CCAGCACGA-AGCCTGCGGA-TCTTTAAGCCCGGATACAATTCCAGCATGAAGCCTGCGG
59123333 ACCTTAAGTT
Statistics
Matches: 248, Mismatches: 31, Indels: 31
0.80 0.10 0.10
Matches are distributed among these distances:
77 2 0.01
78 54 0.22
79 105 0.42
80 85 0.34
81 2 0.01
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.21
Consensus pattern (81 bp):
CCAGCACGAAGCCTGCGGATCTTTAAGCCCGGATACAATTCCAGCATGAAGCCTGCGGGTCTTTA
AGCCCGAGATACAATT
Found at i:59123249 original size:119 final size:117
Alignment explanation
Indices: 59122959--59123341 Score: 545
Period size: 119 Copynumber: 3.2 Consensus size: 117
59122949 GAATATAGTA
** * * * *
59122959 CCAGCACGAAGCCTATGGATCTTAAGTCAGGATACAATTCCAGCATGAAGCCTACGGGTCTTTAA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCA-CAAGCCTGCGGGTCTTTAA
* * ** *
59123024 GCCGAGATACAATTCCAGCACGA-AGCCTGTAGGTCTTTAAGCCCGGATACAAAT
65 GCCG-GATATAATTCCAGCA-TATAGCCTGCGGGTCTTTAAGCCCGGATACAATT
59123078 -CAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGGTCTTTAA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCAC-AAGCCTGCGGGTCTTTAA
*
59123142 GCCTGGATATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGAATACAATT
65 GCC-GGATATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATACAATT
59123196 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACAACGCCTGCGGGTCTTTAC
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACAA-GCCTGCGGGTCTTTA-
* * *
59123261 ACCCGGACATAATTCCAGCATATAGCCTGCGAGTCTTTAAGCCCGGATACAATT
64 AGCCGGATATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATACAATT
*
59123315 CCAGCACGAAGCTTGCGGACCTTAAGT
1 CCAGCACGAAGCCTGCGGACCTTAAGT
59123342 TTGGATATAC
Statistics
Matches: 241, Mismatches: 17, Indels: 12
0.89 0.06 0.04
Matches are distributed among these distances:
117 1 0.00
118 103 0.43
119 134 0.56
120 3 0.01
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (117 bp):
CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACAAGCCTGCGGGTCTTTAAG
CCGGATATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATACAATT
Found at i:59126349 original size:6 final size:6
Alignment explanation
Indices: 59126328--59126458 Score: 99
Period size: 6 Copynumber: 21.3 Consensus size: 6
59126318 AAGAAACATT
* * *
59126328 ATCAGA A-CTAGA ATCAGG ATCAGA ATCAGA ATCAGA ATTAGA ATTAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * *
59126375 GTGACAGA ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
* *
59126426 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
59126459 GTGAATGCAA
Statistics
Matches: 100, Mismatches: 14, Indels: 22
0.74 0.10 0.16
Matches are distributed among these distances:
5 6 0.06
6 82 0.82
7 9 0.09
8 3 0.03
ACGTcount: A:0.47, C:0.15, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:59126349 original size:18 final size:18
Alignment explanation
Indices: 59126328--59126455 Score: 82
Period size: 19 Copynumber: 6.9 Consensus size: 18
59126318 AAGAAACATT
59126328 ATCAGAA-CTAGAATCAGG
1 ATCAGAATC-AGAATCAGG
*
59126346 ATCAGAATCAGAATCAGA
1 ATCAGAATCAGAATCAGG
* * * *
59126364 ATTAGAATTAG-GTGACAGA
1 ATCAGAATCAGAAT--CAGG
*
59126383 ATCAGAATCAGAATCAGT
1 ATCAGAATCAGAATCAGG
**
59126401 ATCAGGTAA-CAGAATCAAA
1 ATCA-G-AATCAGAATCAGG
*
59126420 ATCAGAATCAGTATCAGG
1 ATCAGAATCAGAATCAGG
* *
59126438 TAACAGAATCAAAATCAG
1 -ATCAGAATCAGAATCAG
59126456 AATGTGAATG
Statistics
Matches: 86, Mismatches: 16, Indels: 15
0.74 0.14 0.13
Matches are distributed among these distances:
17 3 0.03
18 39 0.45
19 41 0.48
20 3 0.03
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.20
Consensus pattern (18 bp):
ATCAGAATCAGAATCAGG
Found at i:59126386 original size:31 final size:31
Alignment explanation
Indices: 59126340--59126458 Score: 168
Period size: 31 Copynumber: 3.9 Consensus size: 31
59126330 CAGAACTAGA
* * * *
59126340 ATCAGG-ATCAGAATCAGAATCAGAATTAGA
1 ATCAGGTAACAGAATCAAAATCAGAATCAGT
* * *
59126370 ATTAGGTGACAGAATCAGAATCAGAATCAGT
1 ATCAGGTAACAGAATCAAAATCAGAATCAGT
59126401 ATCAGGTAACAGAATCAAAATCAGAATCAGT
1 ATCAGGTAACAGAATCAAAATCAGAATCAGT
59126432 ATCAGGTAACAGAATCAAAATCAGAAT
1 ATCAGGTAACAGAATCAAAATCAGAAT
59126459 GTGAATGCAA
Statistics
Matches: 80, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
30 5 0.06
31 75 0.94
ACGTcount: A:0.47, C:0.14, G:0.18, T:0.20
Consensus pattern (31 bp):
ATCAGGTAACAGAATCAAAATCAGAATCAGT
Found at i:59127432 original size:27 final size:27
Alignment explanation
Indices: 59126888--59127424 Score: 724
Period size: 27 Copynumber: 19.9 Consensus size: 27
59126878 GGGTTTCTCG
59126888 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
59126915 GT-ATTCCTACCCTACAAGGGTATTTCA
1 GTAATT-CTACCCTACAGGGGTATTTCA
59126942 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
59126969 GTAATTCTACCCTATAGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
59126995 GATAATTCTACCCTACAGGGGTATTTC-
1 G-TAATTCTACCCTACAGGGGTATTTCA
*
59127022 GATAATTCTACCCTACAGGGGTATTTCG
1 G-TAATTCTACCCTACAGGGGTATTTCA
* *
59127050 GTAATTCTACCTTACAGGGATATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
*
59127076 GATAATTCTACCCTATAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
* * *
59127104 GTAATTCTACCATATAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
59127131 GTAATTCTACCTTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
59127158 GTAATTTTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
59127185 GTAATTCTACCTTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
59127212 GTAATTCTACACTACAGGGGTA-TTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * *
59127238 GTAATTCTACCTTACAAGGATATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
59127265 GTAATTCTACCCTACAAGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
59127292 GTAATTTTACCTTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
59127319 ATAATTGTACCTTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
59127346 GTAATTCTACTCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
59127373 GTAATTTTACCTTACAGGGGCATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
59127400 GTAATTCTACCTTACAGGGGTATTT
1 GTAATTCTACCCTACAGGGGTATTT
59127425 TGATAATTTT
Statistics
Matches: 456, Mismatches: 47, Indels: 14
0.88 0.09 0.03
Matches are distributed among these distances:
26 26 0.06
27 425 0.93
28 5 0.01
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:59127450 original size:27 final size:27
Alignment explanation
Indices: 59127420--59127492 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 27
59127410 CTTACAGGGG
* *
59127420 TATTTTGATAATTTTACAAATCGAGGA
1 TATTTTGGTAATTTTACAAACCGAGGA
* * * *
59127447 TATTTGGGTAATTTTATAAACCGGGGG
1 TATTTTGGTAATTTTACAAACCGAGGA
*
59127474 TACTTTGGTAATTTTACAA
1 TATTTTGGTAATTTTACAA
59127493 CTAGGGGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (27 bp):
TATTTTGGTAATTTTACAAACCGAGGA
Found at i:59127499 original size:27 final size:26
Alignment explanation
Indices: 59127416--59127504 Score: 74
Period size: 27 Copynumber: 3.3 Consensus size: 26
59127406 CTACCTTACA
* *
59127416 GGGGTATTTTGATAATTTTACAAATCG
1 GGGGTA-TTTGGTAATTTTACAACTCG
* * *
59127443 AGGATATTTGGGTAATTTTATAAAC-CG
1 GGGGTATTT-GGTAATTTTA-CAACTCG
*
59127470 GGGGTACTTTGGTAATTTTACAACT-A
1 GGGGTA-TTTGGTAATTTTACAACTCG
59127496 GGGGTATTT
1 GGGGTATTT
59127505 CAGTTTTTGG
Statistics
Matches: 49, Mismatches: 9, Indels: 10
0.72 0.13 0.15
Matches are distributed among these distances:
25 3 0.06
26 12 0.24
27 29 0.59
28 5 0.10
ACGTcount: A:0.28, C:0.08, G:0.25, T:0.39
Consensus pattern (26 bp):
GGGGTATTTGGTAATTTTACAACTCG
Found at i:59135458 original size:21 final size:21
Alignment explanation
Indices: 59135434--59135475 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
59135424 CCAATCAAGC
59135434 TAAGTGTTGAACCTAAATATA
1 TAAGTGTTGAACCTAAATATA
59135455 TAAGTGTTGAACCTAAATATA
1 TAAGTGTTGAACCTAAATATA
59135476 CAACTCCCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (21 bp):
TAAGTGTTGAACCTAAATATA
Found at i:59136741 original size:23 final size:23
Alignment explanation
Indices: 59136701--59136744 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
59136691 AAATCAACCA
** *
59136701 TTTCATTTAGTCATTCAAAACTC
1 TTTCATTTACACAATCAAAACTC
59136724 TTTCATTTACACAATCAAAAC
1 TTTCATTTACACAATCAAAAC
59136745 CAAGCCAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.36, C:0.23, G:0.02, T:0.39
Consensus pattern (23 bp):
TTTCATTTACACAATCAAAACTC
Found at i:59149261 original size:43 final size:43
Alignment explanation
Indices: 59149195--59149283 Score: 119
Period size: 43 Copynumber: 2.1 Consensus size: 43
59149185 AAGACCATGA
* *
59149195 CATCGATATGTGTTTACGAGTAAGACC-CTGTCTGGGACAGTGG
1 CATCGATATGTGGTTACGAGTAAGACCAC-GTCTAGGACAGTGG
*
59149238 CATCGATATGTGGTTAC-ATGTAAGACCACGTCTAGGACATTGG
1 CATCGATATGTGGTTACGA-GTAAGACCACGTCTAGGACAGTGG
59149281 CAT
1 CAT
59149284 TGTACGATTT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
42 1 0.02
43 39 0.95
44 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (43 bp):
CATCGATATGTGGTTACGAGTAAGACCACGTCTAGGACAGTGG
Found at i:59156792 original size:14 final size:14
Alignment explanation
Indices: 59156761--59156800 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 14
59156751 ATGAGTCTTC
59156761 AAAAATAAATAGAAAT
1 AAAAATAAA-A-AAAT
*
59156777 AAAAGTAAAAAAAT
1 AAAAATAAAAAAAT
59156791 AAAAATAAAA
1 AAAAATAAAA
59156801 TGAGTCTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 13 0.59
15 1 0.05
16 8 0.36
ACGTcount: A:0.80, C:0.00, G:0.05, T:0.15
Consensus pattern (14 bp):
AAAAATAAAAAAAT
Found at i:59156796 original size:20 final size:21
Alignment explanation
Indices: 59156762--59156800 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
59156752 TGAGTCTTCA
*
59156762 AAAATAAATAGAAATAAAAGT
1 AAAATAAATAAAAATAAAAGT
59156783 AAAA-AAATAAAAATAAAA
1 AAAATAAATAAAAATAAAA
59156801 TGAGTCTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.15
Consensus pattern (21 bp):
AAAATAAATAAAAATAAAAGT
Found at i:59162672 original size:42 final size:42
Alignment explanation
Indices: 59162613--59162694 Score: 164
Period size: 42 Copynumber: 2.0 Consensus size: 42
59162603 ATAGCCTATT
59162613 TTTGTCCACACGGGCATGTGTCTCAGCCGTGTGTGAAACACG
1 TTTGTCCACACGGGCATGTGTCTCAGCCGTGTGTGAAACACG
59162655 TTTGTCCACACGGGCATGTGTCTCAGCCGTGTGTGAAACA
1 TTTGTCCACACGGGCATGTGTCTCAGCCGTGTGTGAAACA
59162695 TGGTTAGGTG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.27
Consensus pattern (42 bp):
TTTGTCCACACGGGCATGTGTCTCAGCCGTGTGTGAAACACG
Found at i:59168597 original size:17 final size:18
Alignment explanation
Indices: 59168568--59168601 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
59168558 TGTGGTTCAC
59168568 CCGTGTGGGCCTACACGT
1 CCGTGTGGGCCTACACGT
59168586 CCGTGT-GGCCTACACG
1 CCGTGTGGGCCTACACG
59168602 GCCCAATTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.12, C:0.35, G:0.32, T:0.21
Consensus pattern (18 bp):
CCGTGTGGGCCTACACGT
Found at i:59171050 original size:45 final size:45
Alignment explanation
Indices: 59170998--59171296 Score: 354
Period size: 45 Copynumber: 6.7 Consensus size: 45
59170988 TTCGTCTGAT
* * * * * *
59170998 TCATGATGCCACAGCACCTTTCAGATATGGTCTTACGCGTTAGAA
1 TCATGATGCCATAACATCTTTCAGCTATGGTCTTACTCGTTAAAA
* * * *
59171043 TCGTGATGCTATAACGTCTTTTAGCTATGGTCTTACTCGTTAAAA
1 TCATGATGCCATAACATCTTTCAGCTATGGTCTTACTCGTTAAAA
** *
59171088 TCATGATGCCATAATGTCTTTCAGCTATGGGCTTACT-GTTAAAA
1 TCATGATGCCATAACATCTTTCAGCTATGGTCTTACTCGTTAAAA
** *
59171132 TCATGATGCCATAATGTCTTTCAGCTATGGTCTTACTC-TTTAAA
1 TCATGATGCCATAACATCTTTCAGCTATGGTCTTACTCGTTAAAA
59171176 TCATGATGCCATAACGA-CTTTCAGCTATGGTCTTACTCGTTAAAA
1 TCATGATGCCATAAC-ATCTTTCAGCTATGGTCTTACTCGTTAAAA
* * ***
59171221 TCATGATGTCATAACATCTTTCAGCTATGTTCTTACTCGTTTCCA
1 TCATGATGCCATAACATCTTTCAGCTATGGTCTTACTCGTTAAAA
*
59171266 -CTATGATGCCATAACATCTTTCAACTATGGT
1 TC-ATGATGCCATAACATCTTTCAGCTATGGT
59171297 TTTATTCAAT
Statistics
Matches: 221, Mismatches: 28, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
44 85 0.38
45 136 0.62
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (45 bp):
TCATGATGCCATAACATCTTTCAGCTATGGTCTTACTCGTTAAAA
Found at i:59171169 original size:89 final size:89
Alignment explanation
Indices: 59170998--59171296 Score: 345
Period size: 89 Copynumber: 3.3 Consensus size: 89
59170988 TTCGTCTGAT
* * * * * * *
59170998 TCATGATGCCACAGC-ACCTTTCAGATATGGTCTTACGCGTTAGAATCGTGATGCTATAACGTCT
1 TCATGATGCCATAACGA-CTTTCAGCTATGGTCTTAC-TGTTAAAATCATGATGCCATAACGTCT
*
59171062 TTTAGCTATGGTCTTACTCGTTAAAA
64 TTCAGCTATGGTCTTACTCGTTAAAA
* * * *
59171088 TCATGATGCCATAATGTCTTTCAGCTATGGGCTTACTGTTAAAATCATGATGCCATAATGTCTTT
1 TCATGATGCCATAACGACTTTCAGCTATGGTCTTACTGTTAAAATCATGATGCCATAACGTCTTT
*
59171153 CAGCTATGGTCTTACTC-TTTAAA
66 CAGCTATGGTCTTACTCGTTAAAA
* *
59171176 TCATGATGCCATAACGACTTTCAGCTATGGTCTTACTCGTTAAAATCATGATGTCATAACATCTT
1 TCATGATGCCATAACGACTTTCAGCTATGGTCTTACT-GTTAAAATCATGATGCCATAACGTCTT
* ***
59171241 TCAGCTATGTTCTTACTCGTTTCCA
65 TCAGCTATGGTCTTACTCGTTAAAA
*
59171266 -CTATGATGCCATAAC-ATCTTTCAACTATGGT
1 TC-ATGATGCCATAACGA-CTTTCAGCTATGGT
59171297 TTTATTCAAT
Statistics
Matches: 181, Mismatches: 23, Indels: 10
0.85 0.11 0.05
Matches are distributed among these distances:
88 39 0.22
89 83 0.46
90 59 0.33
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (89 bp):
TCATGATGCCATAACGACTTTCAGCTATGGTCTTACTGTTAAAATCATGATGCCATAACGTCTTT
CAGCTATGGTCTTACTCGTTAAAA
Found at i:59171292 original size:24 final size:24
Alignment explanation
Indices: 59171223--59171294 Score: 71
Period size: 24 Copynumber: 3.1 Consensus size: 24
59171213 CGTTAAAATC
*
59171223 ATGATGTCATAACATCTTTCAGCT
1 ATGATGTCATAACATCTTTCAACT
* *
59171247 ATG-T-TC-TTAC-TCGTTTCCACT
1 ATGATGTCATAACATC-TTTCAACT
*
59171268 ATGATGCCATAACATCTTTCAACT
1 ATGATGTCATAACATCTTTCAACT
59171292 ATG
1 ATG
59171295 GTTTTATTCA
Statistics
Matches: 37, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
20 2 0.05
21 12 0.32
22 3 0.08
23 2 0.05
24 16 0.43
25 2 0.05
ACGTcount: A:0.26, C:0.24, G:0.11, T:0.39
Consensus pattern (24 bp):
ATGATGTCATAACATCTTTCAACT
Found at i:59171952 original size:16 final size:16
Alignment explanation
Indices: 59171921--59171965 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
59171911 TTTTACATCA
*
59171921 AGTCCTTTTA-ATTTT
1 AGTCCTTTAACATTTT
59171936 A-TCACTTTAACATTTT
1 AGTC-CTTTAACATTTT
59171952 AGTCCTTTAACATT
1 AGTCCTTTAACATT
59171966 AAAATTACTA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 2 0.08
15 6 0.23
16 16 0.62
17 2 0.08
ACGTcount: A:0.27, C:0.18, G:0.04, T:0.51
Consensus pattern (16 bp):
AGTCCTTTAACATTTT
Found at i:59186590 original size:15 final size:14
Alignment explanation
Indices: 59186570--59186601 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
59186560 CACACCCAAA
59186570 AAATTGGGTTAGTAG
1 AAATTGGGTTAGT-G
59186585 AAATTGGGTTAGTG
1 AAATTGGGTTAGTG
59186599 AAA
1 AAA
59186602 CTAAGAGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.38, C:0.00, G:0.31, T:0.31
Consensus pattern (14 bp):
AAATTGGGTTAGTG
Found at i:59194674 original size:125 final size:125
Alignment explanation
Indices: 59194452--59194705 Score: 321
Period size: 125 Copynumber: 2.0 Consensus size: 125
59194442 CCGAAAATTG
* * * *
59194452 GTCTTGTAGATGTCCCCTTCATGCATACAGATTTGATGATAACATGATCGAATGTCAAGTTTAGA
1 GTCTTGTAGATGTCCCCTTCATGCATACAGATTTGATAATAACATAATCGAAGGTCAAGTTTAAA
** * * * * *
59194517 GAAAAACATTGTCTAACCAAGCTTGTCTAATAGTTCTTCTATTAATGGAATCGGGAAGTT
66 GAAAAACATTACCTAACCAAGCTTGCCTAATAGCTCATCTATTAATGGAATCGAGAAGCT
* *** *
59194577 GTCTTGT-GTATGTCCCCTTTATGCATGTGGATTTGATAATAACCTAATCGAAGGTCAAGTTTAA
1 GTCTTGTAG-ATGTCCCCTTCATGCATACAGATTTGATAATAACATAATCGAAGGTCAAGTTTAA
* * *
59194641 AGAAAAATATTACCTGACCAAGCTTGCCTAATAGCTCATCTATTACTGGAATCGAGAAGCT
65 AGAAAAACATTACCTAACCAAGCTTGCCTAATAGCTCATCTATTAATGGAATCGAGAAGCT
59194702 GTCT
1 GTCT
59194706 CTGATAGTCA
Statistics
Matches: 109, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
124 1 0.01
125 108 0.99
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (125 bp):
GTCTTGTAGATGTCCCCTTCATGCATACAGATTTGATAATAACATAATCGAAGGTCAAGTTTAAA
GAAAAACATTACCTAACCAAGCTTGCCTAATAGCTCATCTATTAATGGAATCGAGAAGCT
Found at i:59201435 original size:55 final size:54
Alignment explanation
Indices: 59201347--59201455 Score: 191
Period size: 55 Copynumber: 2.0 Consensus size: 54
59201337 ACAGCTTCTC
59201347 TTTCACTCCTCCTAACTCAAATAGGTGCTCAAACCCGGTACATTGAAAAAAAAG
1 TTTCACTCCTCCTAACTCAAATAGGTGCTCAAACCCGGTACATTGAAAAAAAAG
* *
59201401 NTTTCCCTCCTCCTCACTCAAATAGGTGCTCAAACCCGGTACATTGAAAAAAAAG
1 -TTTCACTCCTCCTAACTCAAATAGGTGCTCAAACCCGGTACATTGAAAAAAAAG
59201456 AAGGTTATTG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 52 1.00
ACGTcount: A:0.35, C:0.28, G:0.13, T:0.24
Consensus pattern (54 bp):
TTTCACTCCTCCTAACTCAAATAGGTGCTCAAACCCGGTACATTGAAAAAAAAG
Found at i:59202844 original size:23 final size:23
Alignment explanation
Indices: 59202814--59202860 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
59202804 ACTAAAAGTA
59202814 TACTTTTAACTCTTCATTCTCCT
1 TACTTTTAACTCTTCATTCTCCT
59202837 TACTTTTAACTCTTCATTCTCCT
1 TACTTTTAACTCTTCATTCTCCT
59202860 T
1 T
59202861 CAATTACTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.17, C:0.30, G:0.00, T:0.53
Consensus pattern (23 bp):
TACTTTTAACTCTTCATTCTCCT
Found at i:59202871 original size:21 final size:23
Alignment explanation
Indices: 59202819--59202871 Score: 74
Period size: 23 Copynumber: 2.4 Consensus size: 23
59202809 AAGTATACTT
**
59202819 TTAACTCTTCATTCTCCTTACTT
1 TTAACTCTTCATTCTCCTTACAA
59202842 TTAACTCTTCATTCTCCTT-CAA
1 TTAACTCTTCATTCTCCTTACAA
59202864 TT-ACTCTT
1 TTAACTCTT
59202872 ATGTGATACA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 6 0.21
22 3 0.11
23 19 0.68
ACGTcount: A:0.19, C:0.30, G:0.00, T:0.51
Consensus pattern (23 bp):
TTAACTCTTCATTCTCCTTACAA
Found at i:59210744 original size:20 final size:20
Alignment explanation
Indices: 59210696--59210747 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
59210686 AGAAAAAGCT
* *
59210696 TTTACCAAAATATCTAACGA
1 TTTACCAATATTTCTAACGA
*
59210716 TTTACCAATATTTCTAAGGA
1 TTTACCAATATTTCTAACGA
*
59210736 TTTATCAATATT
1 TTTACCAATATT
59210748 GACTTTACCA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.38, C:0.15, G:0.06, T:0.40
Consensus pattern (20 bp):
TTTACCAATATTTCTAACGA
Found at i:59211036 original size:5 final size:5
Alignment explanation
Indices: 59211026--59211053 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
59211016 AAACAGGAAA
59211026 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
59211054 TTATAAGACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:59223137 original size:16 final size:16
Alignment explanation
Indices: 59223118--59223149 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
59223108 ACCAAAGAAA
59223118 ATTTCCATTGAAAATT
1 ATTTCCATTGAAAATT
*
59223134 ATTTTCATTGAAAATT
1 ATTTCCATTGAAAATT
59223150 CTAACTTAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.09, G:0.06, T:0.47
Consensus pattern (16 bp):
ATTTCCATTGAAAATT
Found at i:59224926 original size:20 final size:20
Alignment explanation
Indices: 59224888--59224936 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
59224878 GTGGATGTCT
59224888 TTAGTTTAATTAAAGCATGA
1 TTAGTTTAATTAAAGCATGA
*
59224908 TTAGTGTTAGTTAAA-CATGA
1 TTAGT-TTAATTAAAGCATGA
*
59224928 TTAATTTAA
1 TTAGTTTAA
59224937 CTAATTAAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 3 0.12
20 14 0.56
21 8 0.32
ACGTcount: A:0.39, C:0.04, G:0.14, T:0.43
Consensus pattern (20 bp):
TTAGTTTAATTAAAGCATGA
Found at i:59226044 original size:19 final size:19
Alignment explanation
Indices: 59226020--59226056 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
59226010 CAAGATACAC
* *
59226020 TTTGTGTGTTGGGATGCAT
1 TTTGTGTGATAGGATGCAT
59226039 TTTGTGTGATAGGATGCA
1 TTTGTGTGATAGGATGCA
59226057 CTTCATGTGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.05, G:0.35, T:0.43
Consensus pattern (19 bp):
TTTGTGTGATAGGATGCAT
Found at i:59235971 original size:31 final size:31
Alignment explanation
Indices: 59235913--59235971 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
59235903 GCCCACACAG
* *
59235913 GCGTGTGGACCCACATGCGCAGGCCACAAAA
1 GCGTGTGGACCCACACGCGCAGACCACAAAA
* *
59235944 GCGTGTGGGCCCACACGGGCAGACCACA
1 GCGTGTGGACCCACACGCGCAGACCACA
59235972 TCTGCATGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.25, C:0.34, G:0.32, T:0.08
Consensus pattern (31 bp):
GCGTGTGGACCCACACGCGCAGACCACAAAA
Found at i:59238337 original size:12 final size:12
Alignment explanation
Indices: 59238316--59238350 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
59238306 TAGCTTTTCA
*
59238316 AAAATAGAAATG
1 AAAATGGAAATG
59238328 AAAATGGAAATG
1 AAAATGGAAATG
*
59238340 AAAATGAAAAT
1 AAAATGGAAAT
59238351 TTACAATCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.66, C:0.00, G:0.17, T:0.17
Consensus pattern (12 bp):
AAAATGGAAATG
Found at i:59243005 original size:26 final size:26
Alignment explanation
Indices: 59242973--59243039 Score: 84
Period size: 26 Copynumber: 2.6 Consensus size: 26
59242963 TTTTAACCCA
*
59242973 GTAAAATTTTGAAAATTTTA-CCCTCG
1 GTAAAATTTTGAAAATTTTATCCAT-G
*
59242999 GTAAAATTTT-AACGATTTTATCCATG
1 GTAAAATTTTGAA-AATTTTATCCATG
59243025 GTAAAATTTTGAAAA
1 GTAAAATTTTGAAAA
59243040 AAATCATTCA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
25 2 0.06
26 28 0.80
27 5 0.14
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (26 bp):
GTAAAATTTTGAAAATTTTATCCATG
Found at i:59255120 original size:37 final size:37
Alignment explanation
Indices: 59255040--59255132 Score: 136
Period size: 37 Copynumber: 2.5 Consensus size: 37
59255030 TAGTGCCGAG
*
59255040 GCGTGTTATCGGTTGGATTAGCTCTTATGAGCGTTTA
1 GCGTGTTATCGGTTGGATTAGCTCTCATGAGCGTTTA
*
59255077 GCGTGTTATCGATTGGATTAGCTCTCATGAGCGTTT-
1 GCGTGTTATCGGTTGGATTAGCTCTCATGAGCGTTTA
*
59255113 GTTGTGTT-TCGGTTGGATTA
1 G-CGTGTTATCGGTTGGATTA
59255133 CTTGTGTACT
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
36 12 0.24
37 39 0.76
ACGTcount: A:0.15, C:0.13, G:0.30, T:0.42
Consensus pattern (37 bp):
GCGTGTTATCGGTTGGATTAGCTCTCATGAGCGTTTA
Found at i:59275534 original size:51 final size:51
Alignment explanation
Indices: 59275457--59275558 Score: 159
Period size: 51 Copynumber: 2.0 Consensus size: 51
59275447 CGGACTTAGA
* * *
59275457 TCGAGGTAAGAATAAAATACTCGACTAGTTGACTAGTTTCGTTGTTTTTAT
1 TCGAGGCAAGAATAAAATACTCGACTAATCGACTAGTTTCGTTGTTTTTAT
* *
59275508 TCGAGGCAAGAATAAAGTACTTGACTAATCGACTAGTTTCGTTGTTTTTAT
1 TCGAGGCAAGAATAAAATACTCGACTAATCGACTAGTTTCGTTGTTTTTAT
59275559 GTCCGAGGTA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.29, C:0.13, G:0.20, T:0.38
Consensus pattern (51 bp):
TCGAGGCAAGAATAAAATACTCGACTAATCGACTAGTTTCGTTGTTTTTAT
Found at i:59275755 original size:40 final size:40
Alignment explanation
Indices: 59275681--59275757 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
59275671 ACTATGTTTG
* *
59275681 GCACTTAGTGTGCGTTTCGAGATAACTTCGGCTATATATA
1 GCACTTAGTGTGCGATTCGAGATAACTTCAGCTATATATA
* *
59275721 GCACTTAGTGTGCGAATTGGA-ATAGCTTCAGCTATAT
1 GCACTTAGTGTGCG-ATTCGAGATAACTTCAGCTATAT
59275758 GTGGAACTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 28 0.88
41 4 0.12
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (40 bp):
GCACTTAGTGTGCGATTCGAGATAACTTCAGCTATATATA
Found at i:59276509 original size:118 final size:118
Alignment explanation
Indices: 59276301--59276775 Score: 914
Period size: 118 Copynumber: 4.0 Consensus size: 118
59276291 TTGGTATGTC
59276301 TTGAATTATGATTATAGCCATGAGATTTTGCTTGTAATTATTGGTACTTGGCCAATTAAGTTGGC
1 TTGAATTATGATTATAGCCATGAGATTTTGCTTGTAATTATTGGTACTTGGCCAATTAAGTTGGC
59276366 TTGAATTACATGTTTTATAAATGATATATGTGATCTATATAATGTCCTAAGTG
66 TTGAATTACATGTTTTATAAATGATATATGTGATCTATATAATGTCCTAAGTG
59276419 TTGAATTATGATTATAGCCATGAGATTTTGCTTGTAATTATTGGTACTTGGCCAATTAAGTTGGC
1 TTGAATTATGATTATAGCCATGAGATTTTGCTTGTAATTATTGGTACTTGGCCAATTAAGTTGGC
59276484 TTGAATTACATGTTTTATAAATGATATATGTGATCTATATAATGTCCTAAGTG
66 TTGAATTACATGTTTTATAAATGATATATGTGATCTATATAATGTCCTAAGTG
59276537 TTGAATTATGATTATAGCCATGAGATTTTGCTTGTAATTATTGGTACTTGGCCAATTAAGTTGGC
1 TTGAATTATGATTATAGCCATGAGATTTTGCTTGTAATTATTGGTACTTGGCCAATTAAGTTGGC
*
59276602 TTGAATTACATGTTTTATAAATGATATATGTGATGTATATAATGTCCTAAGTG
66 TTGAATTACATGTTTTATAAATGATATATGTGATCTATATAATGTCCTAAGTG
* *
59276655 TTGAATTATGATTATAGCCATGAGATTTTACTTGTAATTGTTGGTACTTGGCCAATTAAGTTGGC
1 TTGAATTATGATTATAGCCATGAGATTTTGCTTGTAATTATTGGTACTTGGCCAATTAAGTTGGC
*
59276720 TTGAATTACATGTTTTATAAATGATATATGTGATGTATATAATGTCCTAAGTG
66 TTGAATTACATGTTTTATAAATGATATATGTGATCTATATAATGTCCTAAGTG
59276773 TTG
1 TTG
59276776 GCTTGTTTGG
Statistics
Matches: 354, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
118 354 1.00
ACGTcount: A:0.29, C:0.09, G:0.19, T:0.43
Consensus pattern (118 bp):
TTGAATTATGATTATAGCCATGAGATTTTGCTTGTAATTATTGGTACTTGGCCAATTAAGTTGGC
TTGAATTACATGTTTTATAAATGATATATGTGATCTATATAATGTCCTAAGTG
Found at i:59280112 original size:23 final size:23
Alignment explanation
Indices: 59280070--59280167 Score: 112
Period size: 23 Copynumber: 4.3 Consensus size: 23
59280060 CTAATGAACA
*
59280070 GTAAGCTCTAT-TAGCTGAAACT
1 GTAAGCTCTATCGAGCTGAAACT
*
59280092 GTAAGCTCTATCGAGCTGAAATT
1 GTAAGCTCTATCGAGCTGAAACT
* *
59280115 GTAAGCTCTATCTAGCTGAAA-A
1 GTAAGCTCTATCGAGCTGAAACT
* *
59280137 GTAAACTC-ATACGAGCTGAAACG
1 GTAAGCTCTAT-CGAGCTGAAACT
59280160 GTAAGCTC
1 GTAAGCTC
59280168 CAATAAGCTG
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
21 2 0.03
22 27 0.42
23 36 0.55
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (23 bp):
GTAAGCTCTATCGAGCTGAAACT
Found at i:59280122 original size:45 final size:45
Alignment explanation
Indices: 59280070--59280217 Score: 156
Period size: 45 Copynumber: 3.2 Consensus size: 45
59280060 CTAATGAACA
* **
59280070 GTAAGCTCTATTAGCTGAAACTGTAAGCTC-TATCGAGCTGAAATT
1 GTAAGCTCTATTAGCTGAAACAGTAAGCTCATA-CGAGCTGAAACG
*
59280115 GTAAGCTCTATCTAGCTGAAA-AGTAAACTCATACGAGCTGAAACG
1 GTAAGCTCTAT-TAGCTGAAACAGTAAGCTCATACGAGCTGAAACG
* * *
59280160 GTAAGCTCCAATAAGCTGAAAACAGTAAGCTCATACGAGTTGATATATCG
1 GTAAGCT-CTATTAGCTG-AAACAGTAAGCTCATACGAGCTGA-A-A-CG
59280210 GTAAGCTC
1 GTAAGCTC
59280218 ATATGAGCCG
Statistics
Matches: 87, Mismatches: 8, Indels: 12
0.81 0.07 0.11
Matches are distributed among these distances:
45 40 0.46
46 17 0.20
47 18 0.21
48 1 0.01
49 2 0.02
50 9 0.10
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (45 bp):
GTAAGCTCTATTAGCTGAAACAGTAAGCTCATACGAGCTGAAACG
Found at i:59285173 original size:40 final size:39
Alignment explanation
Indices: 59285089--59285273 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 39
59285079 TCGAATGATG
* * * *
59285089 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
59285129 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
59285169 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
59285208 TCCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTC-CGAAGGCATTTGTGCGAGTTACTA-AA
*
59285249 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
59285274 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 36 0.29
40 78 0.62
41 11 0.09
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:59285226 original size:79 final size:81
Alignment explanation
Indices: 59285089--59285271 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
59285079 TCGAATGATG
* *
59285089 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
59285153 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
59285168 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCTCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATC-CGAAGGCA
59285230 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
59285248 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
59285272 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 2 0.02
79 58 0.64
80 30 0.33
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:59285295 original size:79 final size:78
Alignment explanation
Indices: 59285126--59285306 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 78
59285116 CTAAGTGACC
* *
59285126 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATATCCGG-TTAAGATCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCAT
**
59285191 TGGTGCGAGTTACT
65 TGGAACGAGTTACT
* *
59285205 AAATCCGGGTTAAG-TCTCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGG
1 ATATCC-GGTTAAGATC-CGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGG
*
59285268 CATTTGAACGAG-TAGCT
62 CATTGGAACGAGTTA-CT
59285285 ATATCCGGTTAA-ATTCCGAAGG
1 ATATCCGGTTAAGA-TCCGAAGG
59285307 TACGTGATTC
Statistics
Matches: 87, Mismatches: 8, Indels: 14
0.80 0.07 0.13
Matches are distributed among these distances:
78 4 0.05
79 55 0.63
80 28 0.32
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (78 bp):
ATATCCGGTTAAGATCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATT
GGAACGAGTTACT
Found at i:59289773 original size:45 final size:45
Alignment explanation
Indices: 59289709--59289797 Score: 169
Period size: 45 Copynumber: 2.0 Consensus size: 45
59289699 TAGATCGAGG
59289709 CAAGAATAAAGTACTTGACTAATCGACTAGTTTCGTCGTTTTTAC
1 CAAGAATAAAGTACTTGACTAATCGACTAGTTTCGTCGTTTTTAC
*
59289754 CAAGAATAAAGTACTTGACTAATCGACTAGTTTCGTTGTTTTTA
1 CAAGAATAAAGTACTTGACTAATCGACTAGTTTCGTCGTTTTTA
59289798 TGTCCGAGGT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (45 bp):
CAAGAATAAAGTACTTGACTAATCGACTAGTTTCGTCGTTTTTAC
Found at i:59305306 original size:14 final size:13
Alignment explanation
Indices: 59305286--59305339 Score: 56
Period size: 14 Copynumber: 4.1 Consensus size: 13
59305276 AATATTTGAC
59305286 TTGTTCTTAATTA
1 TTGTTCTTAATTA
*
59305299 TGTGTTCTTAATTC
1 T-TGTTCTTAATTA
*
59305313 TTGTT-TTAATTC
1 TTGTTCTTAATTA
*
59305325 TTGTTTTATAATTA
1 TTGTTCT-TAATTA
59305339 T
1 T
59305340 GAACTAAACC
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
12 12 0.33
13 6 0.17
14 18 0.50
ACGTcount: A:0.20, C:0.07, G:0.09, T:0.63
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:59305332 original size:12 final size:13
Alignment explanation
Indices: 59305285--59305329 Score: 65
Period size: 12 Copynumber: 3.5 Consensus size: 13
59305275 AAATATTTGA
59305285 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
59305298 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
59305312 CTTGTT-TTAATT
1 CTTGTTCTTAATT
59305324 CTTGTT
1 CTTGTT
59305330 TTATAATTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
12 12 0.41
13 5 0.17
14 12 0.41
ACGTcount: A:0.16, C:0.11, G:0.11, T:0.62
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:59306948 original size:40 final size:40
Alignment explanation
Indices: 59306920--59307104 Score: 228
Period size: 40 Copynumber: 4.6 Consensus size: 40
59306910 ACTAAAGTGA
*
59306920 AAACAGGGGCACGTAAGTGAAATCAGGGGTACCAAAGTAC
1 AAACAGGGGCACGTAAGTGCAATCAGGGGTACCAAAGTAC
* *
59306960 AAACAGGGGCACGTATGTGCAATCAGGGGTACCAAACTAC
1 AAACAGGGGCACGTAAGTGCAATCAGGGGTACCAAAGTAC
* * **
59307000 AAACAGGGGCATGTACA-TGCAATCAAGGGTACTGAAGTAC
1 AAACAGGGGCACGTA-AGTGCAATCAGGGGTACCAAAGTAC
* * * * *
59307040 AAACAGAGGCACGTAAGTACAATCAAGAGTACCGAAGTAC
1 AAACAGGGGCACGTAAGTGCAATCAGGGGTACCAAAGTAC
* *
59307080 AAACTGGGGCATGTAAGTGCAATCA
1 AAACAGGGGCACGTAAGTGCAATCA
59307105 TTTAATAATT
Statistics
Matches: 125, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 124 0.99
ACGTcount: A:0.39, C:0.19, G:0.27, T:0.15
Consensus pattern (40 bp):
AAACAGGGGCACGTAAGTGCAATCAGGGGTACCAAAGTAC
Found at i:59306986 original size:20 final size:20
Alignment explanation
Indices: 59306863--59307104 Score: 80
Period size: 20 Copynumber: 12.1 Consensus size: 20
59306853 AAATGTATAA
**
59306863 CAGGGGCACCAAAGTGCAAT
1 CAGGGGCACGTAAGTGCAAT
* * * *
59306883 TAGGAGCATG-AATGTGCGAT
1 CAGGGGCACGTAA-GTGCAAT
* * *
59306903 TAGGGGCAC-TAAAGTGAAAA
1 CAGGGGCACGT-AAGTGCAAT
*
59306923 CAGGGGCACGTAAGTGAAAT
1 CAGGGGCACGTAAGTGCAAT
* ** * *
59306943 CAGGGGTACCAAAGTACAAA
1 CAGGGGCACGTAAGTGCAAT
*
59306963 CAGGGGCACGTATGTGCAAT
1 CAGGGGCACGTAAGTGCAAT
* ** * * *
59306983 CAGGGGTACCAAACTACAAA
1 CAGGGGCACGTAAGTGCAAT
*
59307003 CAGGGGCATGTACA-TGCAAT
1 CAGGGGCACGTA-AGTGCAAT
* * * *
59307023 CAAGGGTAC-TGAAGTACAAA
1 CAGGGGCACGT-AAGTGCAAT
* *
59307043 CAGAGGCACGTAAGTACAAT
1 CAGGGGCACGTAAGTGCAAT
* * * * *
59307063 CAAGAGTACCG-AAGTACAAA
1 CAGGGGCA-CGTAAGTGCAAT
* *
59307083 CTGGGGCATGTAAGTGCAAT
1 CAGGGGCACGTAAGTGCAAT
59307103 CA
1 CA
59307105 TTTAATAATT
Statistics
Matches: 153, Mismatches: 59, Indels: 20
0.66 0.25 0.09
Matches are distributed among these distances:
19 5 0.03
20 141 0.92
21 7 0.05
ACGTcount: A:0.38, C:0.18, G:0.29, T:0.16
Consensus pattern (20 bp):
CAGGGGCACGTAAGTGCAAT
Found at i:59308336 original size:14 final size:14
Alignment explanation
Indices: 59308310--59308356 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 14
59308300 TCTATATTAA
59308310 AATATATTTAATTT
1 AATATATTTAATTT
59308324 AATAT-TTTAAATTATT
1 AATATATTT-AA-T-TT
59308340 AATAATATTTAATTT
1 AAT-ATATTTAATTT
59308355 AA
1 AA
59308357 AAAATTCTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
13 3 0.11
14 7 0.25
15 5 0.18
16 6 0.21
17 4 0.14
18 3 0.11
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
AATATATTTAATTT
Found at i:59319034 original size:13 final size:13
Alignment explanation
Indices: 59319016--59319041 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
59319006 GGGATTTGTT
59319016 TTAACTAAACTAA
1 TTAACTAAACTAA
59319029 TTAACTAAACTAA
1 TTAACTAAACTAA
59319042 GAATGCACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACTAAACTAA
Found at i:59323816 original size:40 final size:40
Alignment explanation
Indices: 59323772--59323851 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 40
59323762 AGGGGAAAGG
* *
59323772 GGAAAGAGAGGGGAGAAAATTGAAGAAGAGTAGAGAGTTT
1 GGAAAGAGAGGGGAGAAAATAGAAGAAGAATAGAGAGTTT
* *
59323812 GGAAAGAGAGGGGAGAAAATAGAAGAGGAATGGAGAGTTT
1 GGAAAGAGAGGGGAGAAAATAGAAGAAGAATAGAGAGTTT
59323852 AGGGGTGGCC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.45, C:0.00, G:0.41, T:0.14
Consensus pattern (40 bp):
GGAAAGAGAGGGGAGAAAATAGAAGAAGAATAGAGAGTTT
Found at i:59327510 original size:13 final size:13
Alignment explanation
Indices: 59327492--59327517 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
59327482 GGGATTTGTT
59327492 TTAACTAAACTAA
1 TTAACTAAACTAA
59327505 TTAACTAAACTAA
1 TTAACTAAACTAA
59327518 GAATGTACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACTAAACTAA
Found at i:59336350 original size:42 final size:42
Alignment explanation
Indices: 59336225--59336388 Score: 193
Period size: 42 Copynumber: 3.9 Consensus size: 42
59336215 TACCATACCA
* * * *
59336225 ATGCGATATCCCAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * *
59336267 ATGCCAATAGCCCAGCTACGGTCTTACACGAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * * * * *
59336310 ATGTCATATCTCAGATGTGGTCTTATACGAAGTCTTATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
*
59336352 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCA
59336389 ATAGCCCTAA
Statistics
Matches: 98, Mismatches: 23, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
42 63 0.64
43 35 0.36
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:59349850 original size:48 final size:47
Alignment explanation
Indices: 59349794--59349922 Score: 161
Period size: 47 Copynumber: 2.7 Consensus size: 47
59349784 GTGTGAATTA
* * * *
59349794 TACCTTGATTTGGGTTCGGGCCATGGCATAGGTATTTCAGAGATGAGT
1 TACCTTGATTTGGCTTCGGGCCATGGTATAGGTATCT-AGAGATAAGT
* * *
59349842 TACCTTGATTTGGCTAT-GGGCCATGGTATAAGTATCTGGGGATAAGT
1 TACCTTGATTTGGCT-TCGGGCCATGGTATAGGTATCTAGAGATAAGT
*
59349889 TACCTTGATTTGGCTTCGTGCCATGGTATAGGTA
1 TACCTTGATTTGGCTTCGGGCCATGGTATAGGTA
59349923 CTTATCGATT
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
46 1 0.01
47 37 0.53
48 31 0.44
49 1 0.01
ACGTcount: A:0.21, C:0.15, G:0.29, T:0.35
Consensus pattern (47 bp):
TACCTTGATTTGGCTTCGGGCCATGGTATAGGTATCTAGAGATAAGT
Found at i:59351985 original size:41 final size:41
Alignment explanation
Indices: 59351929--59352009 Score: 117
Period size: 41 Copynumber: 2.0 Consensus size: 41
59351919 GCCAATGAAT
*
59351929 ATATATAGCCGAAGCTATCTCAACCTCGCACACTAAGTGCA
1 ATATATAACCGAAGCTATCTCAACCTCGCACACTAAGTGCA
* ** *
59351970 ATATATAACCGAAGCTATCTCGATTTCGTACACTAAGTGC
1 ATATATAACCGAAGCTATCTCAACCTCGCACACTAAGTGC
59352010 CCATAATTAG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (41 bp):
ATATATAACCGAAGCTATCTCAACCTCGCACACTAAGTGCA
Found at i:59356025 original size:21 final size:21
Alignment explanation
Indices: 59356001--59356043 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
59355991 TCAAGTCTAG
59356001 ATTTCGTTCATACATGATTGA
1 ATTTCGTTCATACATGATTGA
*
59356022 ATTTCGTTCATACGTGATTGA
1 ATTTCGTTCATACATGATTGA
59356043 A
1 A
59356044 ATGCACCTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (21 bp):
ATTTCGTTCATACATGATTGA
Found at i:59361875 original size:19 final size:18
Alignment explanation
Indices: 59361838--59361881 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
59361828 ATACATACAG
59361838 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
59361855 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
59361874 TACTAATT
1 TAATAATT
59361882 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:59371777 original size:41 final size:41
Alignment explanation
Indices: 59370896--59371770 Score: 1669
Period size: 41 Copynumber: 21.3 Consensus size: 41
59370886 TATGAGTTTA
* * ** * *
59370896 CGTGTAAGACCATATCTGGGATATGGCATCGTTATGAGATTT
1 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGA-AT
*
59370938 TGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
1 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
59370979 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
1 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
59371020 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
1 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
59371061 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
1 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
59371102 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
1 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
59371143 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
1 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
59371184 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
1 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
59371225 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
1 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
59371266 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
1 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
59371307 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
1 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
59371348 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
1 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
59371389 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
1 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
59371430 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
1 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
59371471 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
1 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
59371512 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
1 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
59371553 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
1 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
59371594 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
1 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
59371635 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
1 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
59371676 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
1 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
*
59371717 CGTGTAAGACCATGTCTGGGACATGGCATCAATATGAGAAT
1 CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
59371758 CGTGTAAGACCAT
1 CGTGTAAGACCAT
59371771 AGCTGGGCTA
Statistics
Matches: 824, Mismatches: 9, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
41 791 0.96
42 33 0.04
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (41 bp):
CGTGTAAGACCATGTCTGGGACATGGCATCAATATTAGAAT
Found at i:59383830 original size:21 final size:21
Alignment explanation
Indices: 59383806--59383845 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
59383796 TTACTCCAAG
*
59383806 GAAGCC-GATTGATCCATCTCA
1 GAAGCCAGATTCA-CCATCTCA
59383827 GAAGCCAGATTCACCATCT
1 GAAGCCAGATTCACCATCT
59383846 AGACTGAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (21 bp):
GAAGCCAGATTCACCATCTCA
Found at i:59387872 original size:55 final size:55
Alignment explanation
Indices: 59387768--59387880 Score: 127
Period size: 55 Copynumber: 2.1 Consensus size: 55
59387758 CGAGCCTACC
* * * * *
59387768 AAAACACCACGGGCGTGTGACACGCCCGTGTGGAAGAACTATGGACAAACCTGTT
1 AAAACACCACGGGCGTGCGACACGCCCATGTCGAAGAACCATGGACAAACCTATT
* * * * * *
59387823 AAAACAGCACGGGCGTGCGACACGCCCATGTCTAATACCCGTGGTCAAACCTATT
1 AAAACACCACGGGCGTGCGACACGCCCATGTCGAAGAACCATGGACAAACCTATT
59387878 AAA
1 AAA
59387881 TGAACACGGG
Statistics
Matches: 47, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
55 47 1.00
ACGTcount: A:0.32, C:0.27, G:0.24, T:0.17
Consensus pattern (55 bp):
AAAACACCACGGGCGTGCGACACGCCCATGTCGAAGAACCATGGACAAACCTATT
Found at i:59387949 original size:52 final size:52
Alignment explanation
Indices: 59387892--59387990 Score: 171
Period size: 52 Copynumber: 1.9 Consensus size: 52
59387882 GAACACGGGC
* * *
59387892 GTAGGGCTTGCCCACACGGGCGTGGGAGAAGCGAACGGAGCTAGACATGGGT
1 GTAGGGCTTGCACACACGGGCGTGAGAGAAGCGAACGAAGCTAGACATGGGT
59387944 GTAGGGCTTGCACACACGGGCGTGAGAGAAGCGAACGAAGCTAGACA
1 GTAGGGCTTGCACACACGGGCGTGAGAGAAGCGAACGAAGCTAGACA
59387991 CGGTCGTGCG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.27, C:0.21, G:0.39, T:0.12
Consensus pattern (52 bp):
GTAGGGCTTGCACACACGGGCGTGAGAGAAGCGAACGAAGCTAGACATGGGT
Found at i:59396246 original size:20 final size:20
Alignment explanation
Indices: 59396221--59396260 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
59396211 GTTGGGCCTT
59396221 GCCCATATT-AACACAGTTGG
1 GCCCAT-TTCAACACAGTTGG
*
59396241 GCCCATTTCAATACAGTTGG
1 GCCCATTTCAACACAGTTGG
59396261 ACCATAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 2 0.11
20 16 0.89
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (20 bp):
GCCCATTTCAACACAGTTGG
Found at i:59396899 original size:8 final size:8
Alignment explanation
Indices: 59396873--59396902 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
59396863 CGAAATGCCA
59396873 GCTTTTCG
1 GCTTTTCG
*
59396881 GCATTTCG
1 GCTTTTCG
59396889 GCTTTTCG
1 GCTTTTCG
59396897 GCTTTT
1 GCTTTT
59396903 GCCGATCTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.03, C:0.23, G:0.23, T:0.50
Consensus pattern (8 bp):
GCTTTTCG
Found at i:59398794 original size:3 final size:3
Alignment explanation
Indices: 59398780--59398835 Score: 78
Period size: 3 Copynumber: 18.7 Consensus size: 3
59398770 TTCTTAGATT
* *
59398780 TTA TTAA TTA TTA TTG TTG TTA TTA TTA TTA TT- TTA TTA TTA TTA
1 TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
59398825 TTA TTA TTA TT
1 TTA TTA TTA TT
59398836 TGATTTAAAA
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
2 2 0.04
3 44 0.90
4 3 0.06
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:59399726 original size:17 final size:18
Alignment explanation
Indices: 59399704--59399737 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
59399694 TAAAAGAGTT
*
59399704 AATTA-GGATTAAATTGG
1 AATTAGGGAATAAATTGG
59399721 AATTAGGGAATAAATTG
1 AATTAGGGAATAAATTG
59399738 AATAAAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.44, C:0.00, G:0.24, T:0.32
Consensus pattern (18 bp):
AATTAGGGAATAAATTGG
Found at i:59400297 original size:27 final size:27
Alignment explanation
Indices: 59400240--59400309 Score: 81
Period size: 27 Copynumber: 2.6 Consensus size: 27
59400230 TGCCTTATTG
*
59400240 GTGTGTTTGGGAGGATATGATATACCG
1 GTGTGTTTGGGAGGATATGATATACCA
* *
59400267 GTGTGTTTGGGAGGCTAT-ATTATACTA
1 GTGTGTTTGGGAGGATATGA-TATACCA
59400294 GTGTGTTAT-GGAGGAT
1 GTGTGTT-TGGGAGGAT
59400310 TTATATTATT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
26 1 0.03
27 35 0.95
28 1 0.03
ACGTcount: A:0.21, C:0.06, G:0.36, T:0.37
Consensus pattern (27 bp):
GTGTGTTTGGGAGGATATGATATACCA
Found at i:59408556 original size:73 final size:73
Alignment explanation
Indices: 59408437--59408584 Score: 278
Period size: 73 Copynumber: 2.0 Consensus size: 73
59408427 ATAGTGGGGG
*
59408437 TTTATATAGATATGAGGGCACACGGCCGTAGGGCATGCCCAAGTGCCCTTATTTTAGCCCGTGTG
1 TTTATATAGATATGAGGGCACACAGCCGTAGGGCATGCCCAAGTGCCCTTATTTTAGCCCGTGTG
59408502 TTCGTGAT
66 TTCGTGAT
*
59408510 TTTATATAGATATGAGGGCACACAGCCGTAGGGCATGCCCGAGTGCCCTTATTTTAGCCCGTGTG
1 TTTATATAGATATGAGGGCACACAGCCGTAGGGCATGCCCAAGTGCCCTTATTTTAGCCCGTGTG
59408575 TTCGTGAT
66 TTCGTGAT
59408583 TT
1 TT
59408585 CCAAATTTGG
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 73 1.00
ACGTcount: A:0.20, C:0.22, G:0.27, T:0.31
Consensus pattern (73 bp):
TTTATATAGATATGAGGGCACACAGCCGTAGGGCATGCCCAAGTGCCCTTATTTTAGCCCGTGTG
TTCGTGAT
Found at i:59413019 original size:29 final size:29
Alignment explanation
Indices: 59412977--59413096 Score: 152
Period size: 29 Copynumber: 4.2 Consensus size: 29
59412967 GAAAGCATGT
59412977 ATATGAATATGATTTGGGCCTAATGGGCC
1 ATATGAATATGATTTGGGCCTAATGGGCC
* *
59413006 ATATGAATGTGATTTGGGCCCAATGGGCC
1 ATATGAATATGATTTGGGCCTAATGGGCC
* * * * *
59413035 ATACGAATGTGATTTAGGCCAAATGGGCA
1 ATATGAATATGATTTGGGCCTAATGGGCC
* *
59413064 ATATGAATAAGA-TTGGGCCTAGTGGGCC
1 ATATGAATATGATTTGGGCCTAATGGGCC
59413092 ATATG
1 ATATG
59413097 CATGAATGTA
Statistics
Matches: 78, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
28 17 0.22
29 61 0.78
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.28
Consensus pattern (29 bp):
ATATGAATATGATTTGGGCCTAATGGGCC
Found at i:59414867 original size:40 final size:40
Alignment explanation
Indices: 59414793--59415012 Score: 282
Period size: 40 Copynumber: 5.5 Consensus size: 40
59414783 AAGTATCTTT
* ** *
59414793 GGGATTTAG-CCGGATATAGAAACTCGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
* **
59414832 GGGTCTTAGCCCGGATATAGTCACTAGCATGAATGCCTTC
1 GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
59414872 GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
* * *
59414912 AGGACTTAGCCCGGGTATAG-CAACTACTCACACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGCCTTC
* *
59414955 GGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
59414995 GGGACTTAGCCCGGATAT
1 GGGACTTAGCCCGGATAT
59415013 CATCCGAATA
Statistics
Matches: 157, Mismatches: 18, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
39 8 0.05
40 115 0.73
43 34 0.22
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
Found at i:59414974 original size:83 final size:80
Alignment explanation
Indices: 59414793--59415012 Score: 291
Period size: 83 Copynumber: 2.7 Consensus size: 80
59414783 AAGTATCTTT
* * * *
59414793 GGGATTTAG-CCGGATATAGAAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACT
1 GGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACT
* **
59414857 AGCATGAATGCCTTC
66 AACACAAATGCCTTC
* * *
59414872 GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCAGGACTTAGCCCGGGTATAG-CAAC
1 GGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC-AC
59414936 TACTCACACAAATGCCTTC
65 TA---ACACAAATGCCTTC
*
59414955 GGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 GGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
59415013 CATCCGAATA
Statistics
Matches: 122, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
79 9 0.07
80 48 0.39
83 65 0.53
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (80 bp):
GGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACT
AACACAAATGCCTTC
Found at i:59416360 original size:22 final size:23
Alignment explanation
Indices: 59416328--59416373 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
59416318 ATCACCCCTC
59416328 CCTTTTCATTTCT-TTATTACTAA
1 CCTTTTCATTT-TATTATTACTAA
*
59416351 CCTTTT-ATTTTATTATTTCTAA
1 CCTTTTCATTTTATTATTACTAA
59416373 C
1 C
59416374 ATAAGACATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 1 0.05
22 14 0.67
23 6 0.29
ACGTcount: A:0.22, C:0.20, G:0.00, T:0.59
Consensus pattern (23 bp):
CCTTTTCATTTTATTATTACTAA
Found at i:59418124 original size:21 final size:21
Alignment explanation
Indices: 59418100--59418139 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
59418090 CCAGTCTCAT
59418100 GCAT-CAGATAATAATAACATG
1 GCATGCAGA-AATAATAACATG
*
59418121 GCATGCAGAAATAGTAACA
1 GCATGCAGAAATAATAACA
59418140 GTCAAACATG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.47, C:0.15, G:0.17, T:0.20
Consensus pattern (21 bp):
GCATGCAGAAATAATAACATG
Found at i:59418221 original size:65 final size:64
Alignment explanation
Indices: 59418102--59418231 Score: 242
Period size: 65 Copynumber: 2.0 Consensus size: 64
59418092 AGTCTCATGC
59418102 ATCAGATAATAATAACATGGCATGCAGAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
*
59418166 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAATAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAG-AAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
59418231 A
1 A
59418232 ACCCTAGGGG
Statistics
Matches: 64, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
64 27 0.42
65 37 0.58
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.25
Consensus pattern (64 bp):
ATCAGATAATAATAACATGGCATGCAGAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
Found at i:59418290 original size:27 final size:26
Alignment explanation
Indices: 59418234--59418290 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
59418224 CAACCTTAAC
* * *
59418234 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
*
59418260 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
59418287 CCTA
1 CCTA
59418291 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Done.