Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 184 of 310
Found at i:60240030 original size:10 final size:10
Alignment explanation
Indices: 60240015--60240039 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
60240005 TTATGTTTTA
60240015 ATTATAATAT
1 ATTATAATAT
60240025 ATTATAATAT
1 ATTATAATAT
60240035 ATTAT
1 ATTAT
60240040 TATACATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (10 bp):
ATTATAATAT
Found at i:60240294 original size:22 final size:23
Alignment explanation
Indices: 60240269--60240315 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
60240259 ATTTTTAGAC
*
60240269 ATGAGTTA-TGTTAAATTAATTG
1 ATGAGTTAGGGTTAAATTAATTG
60240291 ATGAGTTAGGGGTTAAATTAATTG
1 ATGAGTTA-GGGTTAAATTAATTG
60240315 A
1 A
60240316 ATTTCAAGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 8 0.36
24 14 0.64
ACGTcount: A:0.36, C:0.00, G:0.23, T:0.40
Consensus pattern (23 bp):
ATGAGTTAGGGTTAAATTAATTG
Found at i:60244406 original size:14 final size:13
Alignment explanation
Indices: 60244368--60244416 Score: 66
Period size: 14 Copynumber: 3.8 Consensus size: 13
60244358 AAAAAATATG
60244368 ATATTTAATAATA
1 ATATTTAATAATA
60244381 AT-TTTAA-AATA
1 ATATTTAATAATA
60244392 ATATTTAATATATA
1 ATATTTAATA-ATA
*
60244406 ATATATAATAA
1 ATATTTAATAA
60244417 CAATTTTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
11 6 0.19
12 10 0.31
13 4 0.12
14 12 0.38
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (13 bp):
ATATTTAATAATA
Found at i:60245148 original size:14 final size:13
Alignment explanation
Indices: 60245110--60245158 Score: 66
Period size: 14 Copynumber: 3.8 Consensus size: 13
60245100 AAAAAATATG
60245110 ATATTTAATAATA
1 ATATTTAATAATA
60245123 AT-TTTAA-AATA
1 ATATTTAATAATA
60245134 ATATTTAATATATA
1 ATATTTAATA-ATA
*
60245148 ATATATAATAA
1 ATATTTAATAA
60245159 CAATTTTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
11 6 0.19
12 10 0.31
13 4 0.12
14 12 0.38
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (13 bp):
ATATTTAATAATA
Found at i:60245174 original size:742 final size:742
Alignment explanation
Indices: 60243751--60245235 Score: 2970
Period size: 742 Copynumber: 2.0 Consensus size: 742
60243741 TTTGAAATTC
60243751 TAAGACAGTTGCTTGCATTTTGAAAACCTTTAAAAACTTAGAAGGGTACTTGATTATTCGAACTC
1 TAAGACAGTTGCTTGCATTTTGAAAACCTTTAAAAACTTAGAAGGGTACTTGATTATTCGAACTC
60243816 AACGAGAAAAGTCGCAACCCAATAAGTTAGGGCACTACTTTTCTCGAAATTTCCAAACACCGGGC
66 AACGAGAAAAGTCGCAACCCAATAAGTTAGGGCACTACTTTTCTCGAAATTTCCAAACACCGGGC
60243881 ATTGCCTTTATATTTTTTTTTTGAAAACTTGGAATCTCGTTTTTAAATTGATGCATGAGAAATCG
131 ATTGCCTTTATATTTTTTTTTTGAAAACTTGGAATCTCGTTTTTAAATTGATGCATGAGAAATCG
60243946 TATTACATTATAAACCATGCATGATAACATATTATCGTAATAGGTAAACCAAAACATGCATTTAA
196 TATTACATTATAAACCATGCATGATAACATATTATCGTAATAGGTAAACCAAAACATGCATTTAA
60244011 GCAATATGATAGCAATAATATAAAAACCATGCATTAGATACATACATATATAAAAAATAATAAAT
261 GCAATATGATAGCAATAATATAAAAACCATGCATTAGATACATACATATATAAAAAATAATAAAT
60244076 ATAGCAAATCTTAATAACATACGTACAAAGATATACCTAGCATATATTGAAGATGAATAAGCAAA
326 ATAGCAAATCTTAATAACATACGTACAAAGATATACCTAGCATATATTGAAGATGAATAAGCAAA
60244141 ACATACGAACATACAAAGTAATAATTAAAAATGATGTATGATATACAATTTAATATATATAAAAA
391 ACATACGAACATACAAAGTAATAATTAAAAATGATGTATGATATACAATTTAATATATATAAAAA
60244206 AGAGTAATAATATCAATGTACATGTTCATAAAATATAATATCAAATTATAAAATAACATTTAATA
456 AGAGTAATAATATCAATGTACATGTTCATAAAATATAATATCAAATTATAAAATAACATTTAATA
60244271 CATAAATGATATATATACAATATAAAAATATATAAAAGAATAAAAATATAAAATAAAGTGAGTAA
521 CATAAATGATATATATACAATATAAAAATATATAAAAGAATAAAAATATAAAATAAAGTGAGTAA
60244336 TTGTTAACAAAATATACTTATAAAAAAATATGATATTTAATAATAATTTTAAAATAATATTTAAT
586 TTGTTAACAAAATATACTTATAAAAAAATATGATATTTAATAATAATTTTAAAATAATATTTAAT
60244401 ATATAATATATAATAACAATTTTTTTTATAAAAGACAAATAATTATATATAAAATAAAAATATAT
651 ATATAATATATAATAACAATTTTTTTTATAAAAGACAAATAATTATATATAAAATAAAAATATAT
60244466 TGGTTTAGAAAAATAATGTATAAAATA
716 TGGTTTAGAAAAATAATGTATAAAATA
60244493 TAAGACAGTTGCTTGCATTTTGAAAACCTTTAAAAACTTAGAAGGGTACTTGATTATTCGAACTC
1 TAAGACAGTTGCTTGCATTTTGAAAACCTTTAAAAACTTAGAAGGGTACTTGATTATTCGAACTC
60244558 AACGAGAAAAGTCGCAACCCAATAAGTTAGGGCACTACTTTTCTCGAAATTTCCAAACACCGGGC
66 AACGAGAAAAGTCGCAACCCAATAAGTTAGGGCACTACTTTTCTCGAAATTTCCAAACACCGGGC
60244623 ATTGCCTTTATATTTTTTTTTTGAAAACTTGGAATCTCGTTTTTAAATTGATGCATGAGAAATCG
131 ATTGCCTTTATATTTTTTTTTTGAAAACTTGGAATCTCGTTTTTAAATTGATGCATGAGAAATCG
60244688 TATTACATTATAAACCATGCATGATAACATATTATCGTAATAGGTAAACCAAAACATGCATTTAA
196 TATTACATTATAAACCATGCATGATAACATATTATCGTAATAGGTAAACCAAAACATGCATTTAA
60244753 GCAATATGATAGCAATAATATAAAAACCATGCATTAGATACATACATATATAAAAAATAATAAAT
261 GCAATATGATAGCAATAATATAAAAACCATGCATTAGATACATACATATATAAAAAATAATAAAT
60244818 ATAGCAAATCTTAATAACATACGTACAAAGATATACCTAGCATATATTGAAGATGAATAAGCAAA
326 ATAGCAAATCTTAATAACATACGTACAAAGATATACCTAGCATATATTGAAGATGAATAAGCAAA
60244883 ACATACGAACATACAAAGTAATAATTAAAAATGATGTATGATATACAATTTAATATATATAAAAA
391 ACATACGAACATACAAAGTAATAATTAAAAATGATGTATGATATACAATTTAATATATATAAAAA
60244948 AGAGTAATAATATCAATGTACATGTTCATAAAATATAATATCAAATTATAAAATAACATTTAATA
456 AGAGTAATAATATCAATGTACATGTTCATAAAATATAATATCAAATTATAAAATAACATTTAATA
60245013 CATAAATGATATATATACAATATAAAAATATATAAAAGAATAAAAATATAAAATAAAGTGAGTAA
521 CATAAATGATATATATACAATATAAAAATATATAAAAGAATAAAAATATAAAATAAAGTGAGTAA
60245078 TTGTTAACAAAATATACTTATAAAAAAATATGATATTTAATAATAATTTTAAAATAATATTTAAT
586 TTGTTAACAAAATATACTTATAAAAAAATATGATATTTAATAATAATTTTAAAATAATATTTAAT
60245143 ATATAATATATAATAACAATTTTTTTTATAAAAGACAAATAATTATATATAAAATAAAAATATAT
651 ATATAATATATAATAACAATTTTTTTTATAAAAGACAAATAATTATATATAAAATAAAAATATAT
60245208 TGGTTTAGAAAAATAATGTATAAAATA
716 TGGTTTAGAAAAATAATGTATAAAATA
60245235 T
1 T
60245236 CAAATATGTG
Statistics
Matches: 743, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
742 743 1.00
ACGTcount: A:0.48, C:0.10, G:0.10, T:0.32
Consensus pattern (742 bp):
TAAGACAGTTGCTTGCATTTTGAAAACCTTTAAAAACTTAGAAGGGTACTTGATTATTCGAACTC
AACGAGAAAAGTCGCAACCCAATAAGTTAGGGCACTACTTTTCTCGAAATTTCCAAACACCGGGC
ATTGCCTTTATATTTTTTTTTTGAAAACTTGGAATCTCGTTTTTAAATTGATGCATGAGAAATCG
TATTACATTATAAACCATGCATGATAACATATTATCGTAATAGGTAAACCAAAACATGCATTTAA
GCAATATGATAGCAATAATATAAAAACCATGCATTAGATACATACATATATAAAAAATAATAAAT
ATAGCAAATCTTAATAACATACGTACAAAGATATACCTAGCATATATTGAAGATGAATAAGCAAA
ACATACGAACATACAAAGTAATAATTAAAAATGATGTATGATATACAATTTAATATATATAAAAA
AGAGTAATAATATCAATGTACATGTTCATAAAATATAATATCAAATTATAAAATAACATTTAATA
CATAAATGATATATATACAATATAAAAATATATAAAAGAATAAAAATATAAAATAAAGTGAGTAA
TTGTTAACAAAATATACTTATAAAAAAATATGATATTTAATAATAATTTTAAAATAATATTTAAT
ATATAATATATAATAACAATTTTTTTTATAAAAGACAAATAATTATATATAAAATAAAAATATAT
TGGTTTAGAAAAATAATGTATAAAATA
Found at i:60245504 original size:21 final size:20
Alignment explanation
Indices: 60245457--60245520 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 20
60245447 ACTTTTGATA
*
60245457 ATAATAATATAGATAAAAAATAT
1 ATAATAATAT--A-AAAAAATAC
*
60245480 ATAATAGTATAAAAAAATGAC
1 ATAATAATATAAAAAAAT-AC
60245501 ATAATAATATAAAATAAATA
1 ATAATAATATAAAA-AAATA
60245521 TAATATATAA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
20 7 0.19
21 16 0.44
22 4 0.11
23 9 0.25
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.28
Consensus pattern (20 bp):
ATAATAATATAAAAAAATAC
Found at i:60245517 original size:13 final size:13
Alignment explanation
Indices: 60245501--60245618 Score: 56
Period size: 13 Copynumber: 9.3 Consensus size: 13
60245491 AAAAAATGAC
60245501 ATAATAATATAAA
1 ATAATAATATAAA
*
60245514 AT-A-AATATAAT
1 ATAATAATATAAA
60245525 AT-ATAATATGAAA
1 ATAATAATAT-AAA
* *
60245538 GT-AT-ATATGTAA
1 ATAATAATAT-AAA
*
60245550 A-AATAATATATAT
1 ATAATAATATA-AA
*
60245563 ATAAATAATAT-GA
1 AT-AATAATATAAA
60245576 ATAATAAATAATAAA
1 ATAAT-AAT-ATAAA
* *
60245591 ATAATTATATAAT
1 ATAATAATATAAA
60245604 ATAAT-ATA-AAA
1 ATAATAATATAAA
60245615 ATAA
1 ATAA
60245619 GATTAAAAAA
Statistics
Matches: 82, Mismatches: 13, Indels: 22
0.70 0.11 0.19
Matches are distributed among these distances:
11 16 0.20
12 21 0.26
13 27 0.33
14 4 0.05
15 14 0.17
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (13 bp):
ATAATAATATAAA
Found at i:60245558 original size:15 final size:15
Alignment explanation
Indices: 60245503--60245631 Score: 68
Period size: 16 Copynumber: 8.3 Consensus size: 15
60245493 AAAATGACAT
*
60245503 AATAATATAAAATAAA
1 AATAATAT-ATATAAA
*
60245519 TATAATATATAATATGAA
1 AATAATATAT-ATA--AA
* *
60245537 AGT-ATATATGTAAA
1 AATAATATATATAAA
*
60245551 AATAATATATATATA
1 AATAATATATATAAA
60245566 AATAATATGA-ATAATA
1 AATAATAT-ATATAA-A
*
60245582 AATAATA-AAATAATTA
1 AATAATATATATAA--A
*
60245598 TATAATATAATATAAA
1 AATAATAT-ATATAAA
* *
60245614 AATAAGAT-TAAAAA
1 AATAATATATATAAA
60245628 AATA
1 AATA
60245632 GACAAAAAAT
Statistics
Matches: 89, Mismatches: 14, Indels: 22
0.71 0.11 0.18
Matches are distributed among these distances:
14 14 0.16
15 25 0.28
16 36 0.40
17 6 0.07
18 8 0.09
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.33
Consensus pattern (15 bp):
AATAATATATATAAA
Found at i:60245578 original size:9 final size:9
Alignment explanation
Indices: 60245550--60245612 Score: 50
Period size: 8 Copynumber: 7.7 Consensus size: 9
60245540 ATATATGTAA
60245550 AAATAATAT
1 AAATAATAT
60245559 --AT-ATAT
1 AAATAATAT
60245565 AAATAATAT
1 AAATAATAT
*
60245574 GAAT-A-AT
1 AAATAATAT
60245581 AAATAATA-
1 AAATAATAT
60245589 AAATAAT-T
1 AAATAATAT
*
60245597 ATATAATAT
1 AAATAATAT
60245606 AATATAA
1 AA-ATAA
60245613 AAATAAGATT
Statistics
Matches: 42, Mismatches: 4, Indels: 15
0.69 0.07 0.25
Matches are distributed among these distances:
6 4 0.10
7 7 0.17
8 17 0.40
9 10 0.24
10 4 0.10
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (9 bp):
AAATAATAT
Found at i:60245609 original size:24 final size:23
Alignment explanation
Indices: 60245457--60245614 Score: 100
Period size: 23 Copynumber: 6.8 Consensus size: 23
60245447 ACTTTTGATA
*
60245457 ATAATAATATAGATAAAAAAT-AT
1 ATAATAATATA-ATATAAAATAAT
* * *
60245480 ATAATAGTATAA-A-AAAATGAC
1 ATAATAATATAATATAAAATAAT
*
60245501 ATAATAATATAAAATAAATATAAT
1 ATAATAATATAATATAAA-ATAAT
**
60245525 AT-ATAATATGAAAGTATATATGTAA-
1 ATAATAATAT--AA-TATA-AAATAAT
60245550 A-AATAATAT-ATATATAAATAAT
1 ATAATAATATAATATA-AAATAAT
60245572 ATGAATAATA-AATAATAAAATAAT
1 AT-AATAATATAAT-ATAAAATAAT
60245596 -TATATAATATAATATAAAA
1 ATA-ATAATATAATATAAAA
60245615 ATAAGATTAA
Statistics
Matches: 109, Mismatches: 10, Indels: 32
0.72 0.07 0.21
Matches are distributed among these distances:
20 5 0.05
21 22 0.20
22 5 0.05
23 33 0.30
24 24 0.22
25 13 0.12
26 6 0.06
27 1 0.01
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.32
Consensus pattern (23 bp):
ATAATAATATAATATAAAATAAT
Found at i:60245615 original size:24 final size:24
Alignment explanation
Indices: 60245457--60245618 Score: 96
Period size: 24 Copynumber: 7.0 Consensus size: 24
60245447 ACTTTTGATA
60245457 ATAATAATATAGATA-AAAAAT-AT
1 ATAATAATATA-ATATAAAAATAAT
* * *
60245480 ATAATAGTAT-A-A-AAAAATGAC
1 ATAATAATATAATATAAAAATAAT
* *
60245501 ATAATAATATAAAATAAATATAAT
1 ATAATAATATAATATAAAAATAAT
* **
60245525 AT-ATAATATGAAAGTATATATGTAA-
1 ATAATAATAT--AA-TATAAAAATAAT
*
60245550 A-AATAATAT-ATATATAAATAAT
1 ATAATAATATAATATAAAAATAAT
60245572 ATGAATAATA-AATA-ATAAAATAAT
1 AT-AATAATATAATATA-AAAATAAT
60245596 -TATATAATATAATATAAAAATAA
1 ATA-ATAATATAATATAAAAATAA
60245619 GATTAAAAAA
Statistics
Matches: 111, Mismatches: 12, Indels: 31
0.72 0.08 0.20
Matches are distributed among these distances:
20 7 0.06
21 20 0.18
22 4 0.04
23 25 0.23
24 36 0.32
25 11 0.10
26 8 0.07
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.32
Consensus pattern (24 bp):
ATAATAATATAATATAAAAATAAT
Found at i:60245617 original size:32 final size:31
Alignment explanation
Indices: 60245504--60245618 Score: 96
Period size: 32 Copynumber: 3.6 Consensus size: 31
60245494 AAATGACATA
* *
60245504 ATAATATAAAATAAATATAATATATAA-TAT
1 ATAATATAATATAAAAATAATATATAATTAT
* *
60245534 GA-AAGTATATATGTAAAAATAATATAT-ATATAA
1 -ATAA-TATA-ATATAAAAATAATATATAAT-TAT
60245567 ATAATATGAATAATAAATAATAA-A-ATAATTAT
1 ATAATAT-AAT-ATAAA-AATAATATATAATTAT
60245599 ATAATATAATATAAAAATAA
1 ATAATATAATATAAAAATAA
60245619 GATTAAAAAA
Statistics
Matches: 69, Mismatches: 6, Indels: 20
0.73 0.06 0.21
Matches are distributed among these distances:
29 5 0.07
30 7 0.10
31 9 0.13
32 31 0.45
33 12 0.17
34 5 0.07
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (31 bp):
ATAATATAATATAAAAATAATATATAATTAT
Found at i:60245631 original size:77 final size:78
Alignment explanation
Indices: 60245457--60245628 Score: 184
Period size: 77 Copynumber: 2.3 Consensus size: 78
60245447 ACTTTTGATA
*
60245457 ATAATAATATAGA--TAAAAAAT-ATATAATAGTATAAAAAAATGACATAATAATATAAAATAAA
1 ATAAAAATATAGATGTAAAAAATAATATAATAGTATAAAAAAATGACATAATAATATAAAATAAA
60245519 TATAATATATAAT
66 TATAATATATAAT
* * * *
60245532 ATGAAAGTATATATGT-AAAAATAATAT-ATA-TATAAATAATATGA-ATAATAAATAATAAAAT
1 ATAAAAATATAGATGTAAAAAATAATATAATAGTATAAA-AAAATGACATAAT-AAT-ATAAAAT
*
60245593 AATTAT-ATAATATAAT
63 AAATATAAT-ATATAAT
60245609 ATAAAAATA-AGAT-TAAAAAA
1 ATAAAAATATAGATGTAAAAAA
60245629 ATAGACAAAA
Statistics
Matches: 80, Mismatches: 9, Indels: 15
0.77 0.09 0.14
Matches are distributed among these distances:
75 21 0.26
76 28 0.35
77 31 0.39
ACGTcount: A:0.63, C:0.01, G:0.05, T:0.31
Consensus pattern (78 bp):
ATAAAAATATAGATGTAAAAAATAATATAATAGTATAAAAAAATGACATAATAATATAAAATAAA
TATAATATATAAT
Found at i:60245873 original size:14 final size:13
Alignment explanation
Indices: 60245835--60245883 Score: 66
Period size: 14 Copynumber: 3.8 Consensus size: 13
60245825 AAAAAATATG
60245835 ATATTTAATAATA
1 ATATTTAATAATA
60245848 AT-TTTAA-AATA
1 ATATTTAATAATA
60245859 ATATTTAATATATA
1 ATATTTAATA-ATA
*
60245873 ATATATAATAA
1 ATATTTAATAA
60245884 CAAAAATTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
11 6 0.19
12 10 0.31
13 4 0.12
14 12 0.38
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (13 bp):
ATATTTAATAATA
Found at i:60247722 original size:205 final size:206
Alignment explanation
Indices: 60247276--60248029 Score: 1176
Period size: 205 Copynumber: 3.7 Consensus size: 206
60247266 GCTTCTTTGG
* * *
60247276 TTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACA-TGAA
1 TTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACA-AGTGAA
* *
60247340 AGCCAAATCAGCTACGTCTTCGATTTGTTCCTTGTAAGCACAAGAATG-TCAAATCATCTTGGAT
65 AGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGAATGCT-AAATCATCTTGGAT
**
60247404 CTTGCTTCAGTGA-AATTATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGGAG
129 CTTGCTTCAGT-ATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGGAG
*
60247468 ATGCCAGACTTTGA
193 ATGCCAGACTTCGA
* * *
60247482 TTTGTTCTCTGACAATACAGAGATTCCAAATCATCTTAGATTTGCTTCATCGTAAACAAGTGAAA
1 TTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAAGTGAAA
*
60247547 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCTAAATCATCTTGGATC-
66 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGAATGCTAAATCATCTTGGATCT
60247611 TGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGGAGATG
131 TGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGGAGATG
60247676 CCAGACTTCGA
196 CCAGACTTCGA
* * *
60247687 TTTGCTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTACTTCAACGTAAACACGTGAAA
1 TTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAAGTGAAA
* * * *
60247752 GCCAAATAAGCTATGTCTTCGATTCGCTTCTTGTAAGCACAAGGATGCTAAATCATCTTGGATC-
66 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGAATGCTAAATCATCTTGGATCT
* * *
60247816 TGCTTCAATATAAACATCTAAAGGTGAGATCTGCTATGTATCTGCTCCCCATTGAAGTGGAGATG
131 TGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGGAGATG
60247881 CCAGACTTCGA
196 CCAGACTTCGA
* *
60247892 TTTGCTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAA
1 TTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAAGTGAAA
* * * * * *
60247957 GCCAAATCATCTATGTCTTTGGTTTGTTCCTTGTAAGCACAAGAATGCCAAACCATCTTGGATCT
66 GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGAATGCTAAATCATCTTGGATCT
60248022 TGCTTCAG
131 TGCTTCAG
60248030 CCAAATCTGC
Statistics
Matches: 510, Mismatches: 34, Indels: 8
0.92 0.06 0.01
Matches are distributed among these distances:
204 1 0.00
205 381 0.75
206 127 0.25
207 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31
Consensus pattern (206 bp):
TTTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAAGTGAAA
GCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGAATGCTAAATCATCTTGGATCT
TGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTTGAAGTGGAGATG
CCAGACTTCGA
Found at i:60253620 original size:43 final size:43
Alignment explanation
Indices: 60253573--60253656 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
60253563 GCATTAAGCT
* * * *
60253573 TGCTAGGCATGAAAGCCTGAATACATATCACCGGCATGAATCC
1 TGCTAGGCACGAAAGCCCGAATACACATCACCGGCACGAATCC
*
60253616 TGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAT
1 TGCTAGGCACGAAAGCCCGAATACACATCACCGGCACGAAT
60253657 GCTCTTCGGG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.32, C:0.29, G:0.23, T:0.17
Consensus pattern (43 bp):
TGCTAGGCACGAAAGCCCGAATACACATCACCGGCACGAATCC
Found at i:60253704 original size:40 final size:40
Alignment explanation
Indices: 60253649--60253964 Score: 454
Period size: 40 Copynumber: 7.9 Consensus size: 40
60253639 CACATCACCG
* *
60253649 GCACGAATGCTCTTCGGGACTTAGCTCGGATATAACACTA
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
* * *
60253689 GCACGAATGCTCTTCGGGTCTTAACCCGGGTATAACACCA
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
60253729 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
* * * *
60253769 GCACGAATGCTCTTCAGGTCTTAACCCGGGTATAACACCA
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
60253809 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
* * * *
60253849 GCACGAATGCTCTTTGGGTCTTAACCCGGGTATAACACCA
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
* *
60253889 GCACGAATGCTCTTCGGGACTTAACCCGGATATAGCA-TCG
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACT-A
* * *
60253929 GCACAAATGCCCTTCGGGACTTAGCCCGGATATAAC
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAAC
60253965 TCACTGAACT
Statistics
Matches: 245, Mismatches: 30, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
40 245 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
Found at i:60253782 original size:80 final size:80
Alignment explanation
Indices: 60253644--60253964 Score: 518
Period size: 80 Copynumber: 4.0 Consensus size: 80
60253634 GAATACACAT
* * *
60253644 CACCGGCACGAATGCTCTTCGGGACTTAGCTCGGATATAACACTAGCACGAATGCTCTTCGGGTC
1 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTAGCACGAATGCTCTTCGGGTC
60253709 TTAACCCGGGTATAA
66 TTAACCCGGGTATAA
*
60253724 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTAGCACGAATGCTCTTCAGGTC
1 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTAGCACGAATGCTCTTCGGGTC
60253789 TTAACCCGGGTATAA
66 TTAACCCGGGTATAA
*
60253804 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTAGCACGAATGCTCTTTGGGTC
1 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTAGCACGAATGCTCTTCGGGTC
60253869 TTAACCCGGGTATAA
66 TTAACCCGGGTATAA
* * * * *
60253884 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAGCA-TCGGCACAAATGCCCTTCGGGA
1 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAACACT-AGCACGAATGCTCTTCGGGT
* *
60253948 CTTAGCCCGGATATAA
65 CTTAACCCGGGTATAA
60253964 C
1 C
60253965 TCACTGAACT
Statistics
Matches: 226, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
79 1 0.00
80 225 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (80 bp):
CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTAGCACGAATGCTCTTCGGGTC
TTAACCCGGGTATAA
Found at i:60256477 original size:43 final size:43
Alignment explanation
Indices: 60256430--60256513 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
60256420 GCATTAAGCT
* * *
60256430 TGCTAGGCATGAAAGCCTGAATACATATCACCGGCACGAATCC
1 TGCTAGGCACGAAAGCCCGAATACACATCACCGGCACGAATCC
*
60256473 TGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAT
1 TGCTAGGCACGAAAGCCCGAATACACATCACCGGCACGAAT
60256514 GCTCTTCGGG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.32, C:0.30, G:0.23, T:0.15
Consensus pattern (43 bp):
TGCTAGGCACGAAAGCCCGAATACACATCACCGGCACGAATCC
Found at i:60256561 original size:40 final size:40
Alignment explanation
Indices: 60256506--60256821 Score: 463
Period size: 40 Copynumber: 7.9 Consensus size: 40
60256496 CACATCACCG
* *
60256506 GCACGAATGCTCTTCGGGACTTAGCTCGGATATAACACTA
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
* * *
60256546 GCACGAATGCTCTTCGGGTCTTAACCCGGGTATAACACCA
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
60256586 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
* * * *
60256626 GCACGAATGCTCTTCAGGTCTTAACCCGGGTATAACACCA
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
60256666 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
* * * *
60256706 GCACGAATGCTCTTTGGGTCTTAACCCGGGTATAACACCA
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
*
60256746 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACA-TCG
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACT-A
* * *
60256786 GCACAAATGCCCTTCGGGACTTAGCCCGGATATAAC
1 GCACGAATGCTCTTCGGGACTTAACCCGGATATAAC
60256822 TCACTGAACT
Statistics
Matches: 247, Mismatches: 28, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
40 247 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
GCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTA
Found at i:60256606 original size:80 final size:80
Alignment explanation
Indices: 60256501--60256821 Score: 527
Period size: 80 Copynumber: 4.0 Consensus size: 80
60256491 GAATACACAT
* * *
60256501 CACCGGCACGAATGCTCTTCGGGACTTAGCTCGGATATAACACTAGCACGAATGCTCTTCGGGTC
1 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTAGCACGAATGCTCTTCGGGTC
60256566 TTAACCCGGGTATAA
66 TTAACCCGGGTATAA
*
60256581 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTAGCACGAATGCTCTTCAGGTC
1 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTAGCACGAATGCTCTTCGGGTC
60256646 TTAACCCGGGTATAA
66 TTAACCCGGGTATAA
*
60256661 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTAGCACGAATGCTCTTTGGGTC
1 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTAGCACGAATGCTCTTCGGGTC
60256726 TTAACCCGGGTATAA
66 TTAACCCGGGTATAA
* * * *
60256741 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAACA-TCGGCACAAATGCCCTTCGGGA
1 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAACACT-AGCACGAATGCTCTTCGGGT
* *
60256805 CTTAGCCCGGATATAA
65 CTTAACCCGGGTATAA
60256821 C
1 C
60256822 TCACTGAACT
Statistics
Matches: 227, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
79 1 0.00
80 226 1.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.22
Consensus pattern (80 bp):
CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAACACTAGCACGAATGCTCTTCGGGTC
TTAACCCGGGTATAA
Found at i:60258748 original size:47 final size:47
Alignment explanation
Indices: 60258674--60258827 Score: 272
Period size: 47 Copynumber: 3.3 Consensus size: 47
60258664 TCCTTCGGGA
*
60258674 CTTATCACATATATACACTTTCCCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
60258721 CTTATCACATATATACACTTTCACATTCATCACATTTGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60258768 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60258815 CTTATCACATATA
1 CTTATCACATATA
60258828 CATATCTTGT
Statistics
Matches: 100, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 100 1.00
ACGTcount: A:0.29, C:0.30, G:0.07, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:60259506 original size:73 final size:73
Alignment explanation
Indices: 60259387--60259531 Score: 245
Period size: 73 Copynumber: 2.0 Consensus size: 73
60259377 ACTTTAAATA
* ** *
60259387 TCTCATTATCGGAAATTCCTTTGCTTACACGGTTTCTTTTATAAGAAACTAGACTCATTAAGCTT
1 TCTCATTATCAGAAATTAATTTGCTTACACGGTCTCTTTTATAAGAAACTAGACTCATTAAGCTT
60259452 TAATTTCT
66 TAATTTCT
*
60259460 TCTCATTATCAGAAATTAATTTTCTTACACGGTCTCTTTTATAAGAAACTAGACTCATTAAGCTT
1 TCTCATTATCAGAAATTAATTTGCTTACACGGTCTCTTTTATAAGAAACTAGACTCATTAAGCTT
60259525 TAATTTC
66 TAATTTC
60259532 ATAATTTATG
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
73 67 1.00
ACGTcount: A:0.30, C:0.19, G:0.10, T:0.42
Consensus pattern (73 bp):
TCTCATTATCAGAAATTAATTTGCTTACACGGTCTCTTTTATAAGAAACTAGACTCATTAAGCTT
TAATTTCT
Found at i:60260755 original size:13 final size:13
Alignment explanation
Indices: 60260737--60260761 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60260727 TACTAAATTT
60260737 TCATGGATTCAAA
1 TCATGGATTCAAA
60260750 TCATGGATTCAA
1 TCATGGATTCAA
60260762 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:60271168 original size:11 final size:13
Alignment explanation
Indices: 60271145--60271193 Score: 66
Period size: 14 Copynumber: 3.8 Consensus size: 13
60271135 AAAAAATATG
60271145 ATATTTAATAATA
1 ATATTTAATAATA
60271158 AT-TTTAA-AATA
1 ATATTTAATAATA
60271169 ATATTTAATAAATA
1 ATATTTAAT-AATA
*
60271183 ATATATAATAA
1 ATATTTAATAA
60271194 CAATTTTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
11 6 0.19
12 10 0.31
13 4 0.12
14 12 0.38
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (13 bp):
ATATTTAATAATA
Found at i:60271556 original size:41 final size:39
Alignment explanation
Indices: 60271495--60271657 Score: 120
Period size: 45 Copynumber: 4.0 Consensus size: 39
60271485 TTTTGATAAT
*
60271495 AATAATATAGATAAAAAAATATATAATAGTATAAAAAATG
1 AATAATATATATAAAAAAATATATAATA-TATAAAAAATG
* *
60271535 ACATAATA-ATATAAAATAA-ATATAATATAT--AATATG
1 A-ATAATATATATAAAAAAATATATAATATATAAAAAATG
*
60271571 AA-AGTATATATGTAAAAATAATATATAATATATATAAATAATATG
1 AATA--ATATATATAAAAA-AATATAT-A-ATATATAAA-AA-ATG
* *
60271616 AATAATAAATAATAAAATAATTATATAATATAATATAAAAAT
1 AATAATATAT-ATAAAA-AAATATATAATAT-ATA-AAAAAT
60271658 AAGATTAAAA
Statistics
Matches: 97, Mismatches: 9, Indels: 31
0.71 0.07 0.23
Matches are distributed among these distances:
34 1 0.01
35 1 0.01
36 9 0.09
37 7 0.07
38 5 0.05
39 12 0.12
40 11 0.11
41 12 0.12
43 7 0.07
44 12 0.12
45 18 0.19
46 2 0.02
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.33
Consensus pattern (39 bp):
AATAATATATATAAAAAAATATATAATATATAAAAAATG
Found at i:60271566 original size:13 final size:13
Alignment explanation
Indices: 60271542--60271658 Score: 58
Period size: 13 Copynumber: 9.3 Consensus size: 13
60271532 ATGACATAAT
60271542 AATATAA-A-ATA
1 AATATAATATATA
60271553 AATATAATATAT-
1 AATATAATATATA
60271565 AATATGAA-AGTATA
1 AATAT-AATA-TATA
* * *
60271579 TATGTAA-AAATA
1 AATATAATATATA
60271591 ATATATAATATATA
1 A-ATATAATATATA
60271605 TAA-ATAATATGA-A
1 -AATATAATAT-ATA
60271618 TAATA-AATA-ATA
1 -AATATAATATATA
60271630 AA-ATAAT-TATA
1 AATATAATATATA
*
60271641 TAATATAATATAAA
1 -AATATAATATATA
60271655 AATA
1 AATA
60271659 AGATTAAAAA
Statistics
Matches: 83, Mismatches: 7, Indels: 30
0.69 0.06 0.25
Matches are distributed among these distances:
10 1 0.01
11 16 0.19
12 13 0.16
13 39 0.47
14 13 0.16
15 1 0.01
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (13 bp):
AATATAATATATA
Found at i:60271602 original size:24 final size:22
Alignment explanation
Indices: 60271585--60271655 Score: 76
Period size: 23 Copynumber: 3.2 Consensus size: 22
60271575 TATATATGTA
60271585 AAAATAATATATAATATAT-AT
1 AAAATAATATATAATATATAAT
*
60271606 -AAATAATATGAATAATAAATAAT
1 AAAATAATAT--ATAATATATAAT
60271629 AAAATAATTATATAATATA-ATAT
1 AAAATAA-TATATAATATATA-AT
60271652 AAAA
1 AAAA
60271656 ATAAGATTAA
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
20 9 0.21
22 9 0.21
23 15 0.36
24 6 0.14
25 3 0.07
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (22 bp):
AAAATAATATATAATATATAAT
Found at i:60271627 original size:20 final size:20
Alignment explanation
Indices: 60271490--60271658 Score: 104
Period size: 20 Copynumber: 8.3 Consensus size: 20
60271480 AAAACTTTTG
*
60271490 ATAATA-ATAATATAGATAAA
1 ATAATATATAATATATAT-AA
*
60271510 AAAATATATAATAGTATA-AA
1 ATAATATATAATA-TATATAA
*
60271530 A-AATGACATAATA-ATATAAA
1 ATAAT-ATATAATATATAT-AA
*
60271550 ATAA-ATATAATATATA-AT
1 ATAATATATAATATATATAA
* *
60271568 ATGAA-AGTAT-ATATGTAAAA
1 AT-AATA-TATAATATATATAA
60271588 ATAATATATAATATATATAA
1 ATAATATATAATATATATAA
*
60271608 ATAATATGAATAATAAATAATAAA
1 ATAATAT--ATAATATAT-AT-AA
60271632 ATAATTATATAATATAATATAA
1 ATAA-TATATAATAT-ATATAA
60271654 A-AATA
1 ATAATA
60271659 AGATTAAAAA
Statistics
Matches: 120, Mismatches: 11, Indels: 36
0.72 0.07 0.22
Matches are distributed among these distances:
18 6 0.05
19 24 0.20
20 45 0.38
21 10 0.08
22 14 0.12
23 10 0.08
24 8 0.07
25 3 0.03
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.33
Consensus pattern (20 bp):
ATAATATATAATATATATAA
Found at i:60278807 original size:42 final size:42
Alignment explanation
Indices: 60278760--60278863 Score: 172
Period size: 42 Copynumber: 2.5 Consensus size: 42
60278750 TATCGGGATG
* * *
60278760 TGAGATTCATGTAAGACCATGACTGGGACATTTGCATCGATA
1 TGAGATTCGTGTAAGACCATGACTAGGACATTGGCATCGATA
*
60278802 TGAGATTCGTGTAAGACCATGTCTAGGACATTGGCATCGATA
1 TGAGATTCGTGTAAGACCATGACTAGGACATTGGCATCGATA
60278844 TGAGATTCGTGTAAGACCAT
1 TGAGATTCGTGTAAGACCAT
60278864 AGCTAAGCTA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 58 1.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (42 bp):
TGAGATTCGTGTAAGACCATGACTAGGACATTGGCATCGATA
Found at i:60278877 original size:42 final size:42
Alignment explanation
Indices: 60278760--60278885 Score: 159
Period size: 42 Copynumber: 3.0 Consensus size: 42
60278750 TATCGGGATG
* * ** *
60278760 TGAGATTCATGTAAGACCATGACTGGGACATTTGCATCGATA
1 TGAGATTCGTGTAAGACCATGTCTAAGACATTGGCATCGATA
*
60278802 TGAGATTCGTGTAAGACCATGTCTAGGACATTGGCATCGATA
1 TGAGATTCGTGTAAGACCATGTCTAAGACATTGGCATCGATA
60278844 TGAGATTCGTGTAAGACCATAG-CTAAG-CTATTGG-ATCGATA
1 TGAGATTCGTGTAAGACCAT-GTCTAAGAC-ATTGGCATCGATA
60278885 T
1 T
60278886 ACTATAACAT
Statistics
Matches: 77, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
41 9 0.12
42 67 0.87
43 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (42 bp):
TGAGATTCGTGTAAGACCATGTCTAAGACATTGGCATCGATA
Found at i:60279798 original size:21 final size:21
Alignment explanation
Indices: 60279772--60279828 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 21
60279762 ATGGTATAAG
60279772 GTTGATGAATTGGTACATTTT
1 GTTGATGAATTGGTACATTTT
*
60279793 GTTGATGATGAATTGGTATATTTT
1 G-T--TGATGAATTGGTACATTTT
*
60279817 GTGGCATGAATT
1 GTTG-ATGAATT
60279829 ATATGATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
21 2 0.07
22 8 0.27
23 1 0.03
24 19 0.63
ACGTcount: A:0.25, C:0.04, G:0.26, T:0.46
Consensus pattern (21 bp):
GTTGATGAATTGGTACATTTT
Found at i:60286118 original size:29 final size:28
Alignment explanation
Indices: 60286082--60286159 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
60286072 TCATGAGATT
60286082 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
60286112 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
60286139 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
60286160 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:60286377 original size:174 final size:174
Alignment explanation
Indices: 60286112--60286439 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
60286102 AAATTGTACA
*
60286112 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* * *
60286177 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTATCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
60286242 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
60286286 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
60286351 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
60286416 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
60286440 ACCTTGAGTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:60290574 original size:26 final size:27
Alignment explanation
Indices: 60290542--60290611 Score: 99
Period size: 26 Copynumber: 2.7 Consensus size: 27
60290532 GCGGATACTC
60290542 CACAGCTCGTGTGAGCAAG-CCCATTT
1 CACAGCTCGTGTGAGCAAGACCCATTT
* *
60290568 CATAGCTCGTGTGAGC-AGACTCATTT
1 CACAGCTCGTGTGAGCAAGACCCATTT
*
60290594 CACAACTCGTGTGAGCAA
1 CACAGCTCGTGTGAGCAA
60290612 TTATGTAGAA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
25 2 0.05
26 35 0.92
27 1 0.03
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (27 bp):
CACAGCTCGTGTGAGCAAGACCCATTT
Found at i:60291144 original size:13 final size:13
Alignment explanation
Indices: 60291126--60291150 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60291116 TGAAAGGGAA
60291126 AGTAAGTAAATAG
1 AGTAAGTAAATAG
60291139 AGTAAGTAAATA
1 AGTAAGTAAATA
60291151 TGTGATGTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.20, T:0.24
Consensus pattern (13 bp):
AGTAAGTAAATAG
Found at i:60295786 original size:27 final size:26
Alignment explanation
Indices: 60295756--60295809 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
60295746 AGGAATACCG
*
60295756 ATTTACCCCTGGAGAGTAAAATGACTA
1 ATTTACCCCTCGAGAGT-AAATGACTA
* *
60295783 ATTTACCCCTCGTGCGTAAATGACTA
1 ATTTACCCCTCGAGAGTAAATGACTA
60295809 A
1 A
60295810 CTTGTGTGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 10 0.42
27 14 0.58
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (26 bp):
ATTTACCCCTCGAGAGTAAATGACTA
Found at i:60302801 original size:27 final size:26
Alignment explanation
Indices: 60302757--60302808 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
60302747 CTCGCTGCAA
*
60302757 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
60302784 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
60302809 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:60302899 original size:27 final size:26
Alignment explanation
Indices: 60302847--60302905 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
60302837 CCACATATAT
*
60302847 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
60302873 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
60302900 ATATCT
1 ATATCT
60302906 AGCAGCCTCG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.36
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:60305378 original size:40 final size:40
Alignment explanation
Indices: 60305280--60305542 Score: 309
Period size: 40 Copynumber: 6.6 Consensus size: 40
60305270 TCCTCGTTCA
* * * ** *
60305280 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
60305319 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
60305359 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
60305399 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
60305439 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
60305479 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
60305519 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
60305543 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 37 0.19
40 154 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:60311342 original size:40 final size:40
Alignment explanation
Indices: 60311244--60311626 Score: 504
Period size: 40 Copynumber: 9.6 Consensus size: 40
60311234 TCCTCGTTCA
* * * * *
60311244 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
60311283 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
60311323 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
60311363 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
60311403 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
60311443 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
60311483 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * *
60311523 AAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGG-ATTTAATAACTCGCACG
** * * * *
60311563 AATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
60311603 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
60311627 CAGCATTCAA
Statistics
Matches: 315, Mismatches: 23, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
39 39 0.12
40 264 0.84
41 12 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:60311635 original size:41 final size:41
Alignment explanation
Indices: 60311558--60311635 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
60311548 TTTGTATCTC
* * *
60311558 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
60311599 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
60311636 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:60315145 original size:22 final size:22
Alignment explanation
Indices: 60315118--60315181 Score: 62
Period size: 22 Copynumber: 2.9 Consensus size: 22
60315108 ATTATTTATT
60315118 TAATTATAATTAAATAATTAAA
1 TAATTATAATTAAATAATTAAA
* *
60315140 TAATTAAATATTTGAA-AATTAAA
1 TAATT--ATAATTAAATAATTAAA
60315163 -AATTA-AATTAAATTAATTA
1 TAATTATAATTAAA-TAATTA
60315182 GTCATTATGA
Statistics
Matches: 34, Mismatches: 4, Indels: 9
0.72 0.09 0.19
Matches are distributed among these distances:
19 5 0.15
20 1 0.03
21 5 0.15
22 9 0.26
23 7 0.21
24 7 0.21
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.41
Consensus pattern (22 bp):
TAATTATAATTAAATAATTAAA
Found at i:60315166 original size:7 final size:8
Alignment explanation
Indices: 60315123--60315170 Score: 64
Period size: 8 Copynumber: 6.2 Consensus size: 8
60315113 TTATTTAATT
60315123 ATAATTAA
1 ATAATTAA
60315131 ATAATTAA
1 ATAATTAA
60315139 ATAATTAA
1 ATAATTAA
* *
60315147 ATATTTGA
1 ATAATTAA
60315155 A-AATTAA
1 ATAATTAA
60315162 A-AATTAA
1 ATAATTAA
60315169 AT
1 AT
60315171 TAAATTAATT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
7 12 0.34
8 23 0.66
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (8 bp):
ATAATTAA
Found at i:60325324 original size:20 final size:19
Alignment explanation
Indices: 60325273--60325325 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
60325263 CAAATTTGAT
60325273 TTAAATAATTA-AAAAATA
1 TTAAATAATTATAAAAATA
60325291 TTAAATTTAATTATAAAAATA
1 TTAAA--TAATTATAAAAATA
*
60325312 TATAAATATTTATA
1 T-TAAATAATTATA
60325326 TTTAATTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
18 5 0.17
20 13 0.43
21 8 0.27
22 4 0.13
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
TTAAATAATTATAAAAATA
Found at i:60326090 original size:23 final size:23
Alignment explanation
Indices: 60326060--60326103 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
60326050 ATTTGCAATT
60326060 AGAAATTGAGCAGTGCCGGAATC
1 AGAAATTGAGCAGTGCCGGAATC
*
60326083 AGAAATTGAGCAGTGTCGGAA
1 AGAAATTGAGCAGTGCCGGAA
60326104 ATAGTGCTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.36, C:0.14, G:0.32, T:0.18
Consensus pattern (23 bp):
AGAAATTGAGCAGTGCCGGAATC
Found at i:60331371 original size:30 final size:30
Alignment explanation
Indices: 60331335--60331392 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
60331325 CACGGTCTAG
60331335 CACATGGGCGTGTGGCAAGCCCGTGTGGCT
1 CACATGGGCGTGTGGCAAGCCCGTGTGGCT
* *
60331365 CACATGGGCGTGTGGCCAGCTCGTGTGG
1 CACATGGGCGTGTGGCAAGCCCGTGTGG
60331393 AAATGCCCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.12, C:0.26, G:0.41, T:0.21
Consensus pattern (30 bp):
CACATGGGCGTGTGGCAAGCCCGTGTGGCT
Found at i:60333267 original size:22 final size:22
Alignment explanation
Indices: 60333242--60333286 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
60333232 AAATAAAATT
60333242 AAAAAGAA-AGATAAAAATAATA
1 AAAAAGAATA-ATAAAAATAATA
* *
60333264 AAAAATAATAATAATAATAATA
1 AAAAAGAATAATAAAAATAATA
60333286 A
1 A
60333287 TAAACTCAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 19 0.95
23 1 0.05
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (22 bp):
AAAAAGAATAATAAAAATAATA
Found at i:60333273 original size:3 final size:3
Alignment explanation
Indices: 60333252--60333289 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
60333242 AAAAAGAAAG
*
60333252 ATA AAA ATA ATA A-A A-A ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
60333290 ACTCAATGAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
2 4 0.12
3 28 0.88
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (3 bp):
ATA
Found at i:60333363 original size:22 final size:22
Alignment explanation
Indices: 60333336--60333385 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
60333326 ATGATAATAG
*
60333336 TAAAAAAATACGAA-AGAAAAA
1 TAAAAAAATACAAATAGAAAAA
60333357 TGAAAAAAATACAAATAGAAAAA
1 T-AAAAAAATACAAATAGAAAAA
60333380 TAAAAA
1 TAAAAA
60333386 TAAAAATAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 1 0.04
22 17 0.65
23 8 0.31
ACGTcount: A:0.76, C:0.04, G:0.08, T:0.12
Consensus pattern (22 bp):
TAAAAAAATACAAATAGAAAAA
Found at i:60333422 original size:15 final size:16
Alignment explanation
Indices: 60333402--60333439 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
60333392 TAATAAACGT
60333402 ATATAAAAAATT-AAA
1 ATATAAAAAATTAAAA
60333417 ATATAAAAAAATTAAAA
1 ATAT-AAAAAATTAAAA
60333434 ATATAA
1 ATATAA
60333440 GTATGAGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.19
16 10 0.48
17 7 0.33
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (16 bp):
ATATAAAAAATTAAAA
Found at i:60333426 original size:17 final size:16
Alignment explanation
Indices: 60333375--60333439 Score: 60
Period size: 17 Copynumber: 3.9 Consensus size: 16
60333365 ATACAAATAG
60333375 AAAAATAAAA-ATAAA
1 AAAAATAAAATATAAA
* *
60333390 AATAATAAACGTATATAA
1 AAAAATAAA-ATATA-AA
*
60333408 AAAATTAAAATATAAA
1 AAAAATAAAATATAAA
*
60333424 AAAATTAAAAATATAA
1 AAAAAT-AAAATATAA
60333440 GTATGAGAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
15 8 0.20
16 8 0.20
17 16 0.39
18 9 0.22
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.23
Consensus pattern (16 bp):
AAAAATAAAATATAAA
Found at i:60337899 original size:30 final size:30
Alignment explanation
Indices: 60337865--60337921 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
60337855 ATAGACTGGC
* *
60337865 ACATGGGCATGTGGCCAGCCAGTGTGGCTT
1 ACATGGGCATCTCGCCAGCCAGTGTGGCTT
* *
60337895 ACATGGGCGTCTCGCCAGCCCGTGTGG
1 ACATGGGCATCTCGCCAGCCAGTGTGG
60337922 AAATGCCCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.14, C:0.28, G:0.37, T:0.21
Consensus pattern (30 bp):
ACATGGGCATCTCGCCAGCCAGTGTGGCTT
Found at i:60348587 original size:37 final size:37
Alignment explanation
Indices: 60348487--60348589 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
60348477 CGAATAGTCC
* *
60348487 CCACACGTAGTTATCGGGTCTTACCCAGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
60348524 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
60348561 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
60348590 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:60348788 original size:48 final size:48
Alignment explanation
Indices: 60348730--60348864 Score: 243
Period size: 48 Copynumber: 2.8 Consensus size: 48
60348720 ATATACACAC
*
60348730 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
60348778 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
60348826 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCA
60348865 TACACATATA
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 84 1.00
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:60354633 original size:46 final size:48
Alignment explanation
Indices: 60354561--60354663 Score: 147
Period size: 46 Copynumber: 2.2 Consensus size: 48
60354551 GACAGGACAG
* * * *
60354561 GACAGAAATGAGCCATGTAAGTCCATATCA-GT-TATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
*
60354607 GACAGGAATGAGCCATGTAAGCCCATATTATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
60354655 GACAGGAAT
1 GACAGGAAT
60354664 AATTCATGTA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
46 27 0.54
47 1 0.02
48 22 0.44
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (48 bp):
GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
Found at i:60361083 original size:13 final size:13
Alignment explanation
Indices: 60361065--60361093 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
60361055 CGTTGTTTAT
60361065 TAAACTAATTAAC
1 TAAACTAATTAAC
60361078 TAAACTAATTAAC
1 TAAACTAATTAAC
60361091 TAA
1 TAA
60361094 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:60371021 original size:5 final size:5
Alignment explanation
Indices: 60370980--60371064 Score: 63
Period size: 5 Copynumber: 16.8 Consensus size: 5
60370970 CCTCCTATCT
60370980 TTTTA TTCTTA TTTT- TTTCTA TTTTA -TTTA TTCTTA TTTTA TTTT-
1 TTTTA TT-TTA TTTTA TTT-TA TTTTA TTTTA TT-TTA TTTTA TTTTA
* *
60371025 TTTAA TTTCTA TTTTCA TTTCAA TTTTA --TTA TTTTA TTTT
1 TTTTA TTT-TA TTTT-A TTT-TA TTTTA TTTTA TTTTA TTTT
60371065 GAAAGACATA
Statistics
Matches: 65, Mismatches: 4, Indels: 22
0.71 0.04 0.24
Matches are distributed among these distances:
3 3 0.05
4 10 0.15
5 27 0.42
6 25 0.38
ACGTcount: A:0.19, C:0.07, G:0.00, T:0.74
Consensus pattern (5 bp):
TTTTA
Found at i:60371062 original size:25 final size:24
Alignment explanation
Indices: 60370982--60371064 Score: 79
Period size: 25 Copynumber: 3.5 Consensus size: 24
60370972 TCCTATCTTT
60370982 TTATTCTTATTTT-TTTCTATTTTA
1 TTATTCTTATTTTATTTC-ATTTTA
60371006 TTTATTCTTATTTTATTT--TTTTA
1 -TTATTCTTATTTTATTTCATTTTA
*
60371029 AT-TTC-TATTTTCATTTCAATTTTA
1 TTATTCTTATTTT-ATTTC-ATTTTA
60371053 TTATT-TTATTTT
1 TTATTCTTATTTT
60371065 GAAAGACATA
Statistics
Matches: 49, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
20 6 0.12
21 7 0.14
22 1 0.02
23 5 0.10
24 6 0.12
25 21 0.43
26 3 0.06
ACGTcount: A:0.19, C:0.07, G:0.00, T:0.73
Consensus pattern (24 bp):
TTATTCTTATTTTATTTCATTTTA
Found at i:60384812 original size:22 final size:22
Alignment explanation
Indices: 60384787--60384834 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
60384777 AACGCATCCA
60384787 AATCCAACATTTTAAAACCAAC
1 AATCCAACATTTTAAAACCAAC
60384809 AATCCAACATTTTAAAACCAAC
1 AATCCAACATTTTAAAACCAAC
60384831 AATC
1 AATC
60384835 TAGAGTGTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.50, C:0.27, G:0.00, T:0.23
Consensus pattern (22 bp):
AATCCAACATTTTAAAACCAAC
Found at i:60393938 original size:549 final size:555
Alignment explanation
Indices: 60392859--60393954 Score: 1720
Period size: 549 Copynumber: 2.0 Consensus size: 555
60392849 AAAACCCAAA
*
60392859 ACCCCTGAATGGAAATTGAAGGGAGATCTTCAGTCTTGATGATGAATCCGGCTTCTGAGATGGAC
1 ACCCCTGAATGGAAATTGAAGGGAGATCTTCAGTCTTGATGATGAATCCAGCTTCTGAGATGGAC
*
60392924 CAATCAGCTTTCCTTGAGTAATTCCTTGCCTCCTCCTCTGCGTCCTCCCTCCTAAGTGCCTCCTC
66 CAACCAGCTTTCCTTGAGTAATTCCTTGCCTCCTCCTCTGCGTCCTCCCTCCTAAGTGCCTCCTC
* *
60392989 AAGTGTTTAAATAGGTTTCAGAATGCCTAAGAGCCCTCAAAATTGGCCTTTTCTGAATAGAGTTA
131 AAGTGTTTAAATAGGTTTCAGAATGCATAAGAGCCCTCAAAATTGGCCTTTTCCGAATAGAGTTA
** ** * *
60393054 TACTTGGGCTCGGCAGGGACACGCCCATGTGCGATTACTCTGGCCCGTGGTCAAGGCTGTTGAAC
196 TACTTGGGCTCGGCAGGGACACGCCCATGTAAGATTACTCCAGCCCGTGGTCAAGGCTATTAAAC
* * * **
60393119 AGGCACGGGCATGTGGTCTACCCGTGTAAGTCATGCTTTGATCCTACCAAATGGACACGACCGTG
261 AGGAACGGGCATATAGTCTACCCGTGTAAGTCATGCTTCAATCCTACC--AT-G--AC-A-C-TG
* *
60393184 TGACACGCCCGTGTGAGGAAGTCCAGGTCGTGTTGATTTCCCATGTGGGTCCATTTTCTATGTTT
318 TGACACGCCCGTGTGAGGAAGTCCAGGTCGTGTTGATTTCCCATGTGGGTCAATTTTCTATATTT
* * *
60393249 TCGGCCTGTTTCTCGCTCTTTGCACTCTCCTATGCTCACCTTAGTATAAAACATGAAATTAAAGG
383 TCGGCCTATTTCTCACTCTTTACACTCTCCTATGCTCACCTTAGTATAAAACATGAAATTAAAGG
* *
60393314 ATTAGGAGCATTGAATTCACCAAATCTAAGGAGAAACCATCCATAAATGTGCTAAGCATAGGATA
448 ATTAGAAGCATTGAATTCACCAAATCTAAGGAGAAACCATCCATAAATGTGCTAAGCATAGGACA
60393379 AAAATATGTATAAATTACGGTTTATCAGTCTACAAACCAAGGT
513 AAAATATGTATAAATTACGGTTTATCAGTCTACAAACCAAGGT
60393422 ACCCCTGAATGGAAATTGAAGGGAGATCTTCAGTCTTGATGATGAATCCAGCTTCTGAGATGGAC
1 ACCCCTGAATGGAAATTGAAGGGAGATCTTCAGTCTTGATGATGAATCCAGCTTCTGAGATGGAC
*
60393487 CAACCAGCTTTCCTTGAGTAATTCCTTGCCTCTTCCTCTGCGTCCTCCCTCCTAAGTGCCTCCTC
66 CAACCAGCTTTCCTTGAGTAATTCCTTGCCTCCTCCTCTGCGTCCTCCCTCCTAAGTGCCTCCTC
* * * *
60393552 AGGTGTTTAAATAGGTTTTAGAATGCATAAGAGCCCTTAAAATTGGCCTTTTCCG-ATAGGGTTA
131 AAGTGTTTAAATAGGTTTCAGAATGCATAAGAGCCCTCAAAATTGGCCTTTTCCGAATAGAGTTA
* *
60393616 TACTTGGGCTCGGTAGGGACACGCCCATGTAAGATTACTCCAGCCCGTGGTCAAGGCTATTAAAT
196 TACTTGGGCTCGGCAGGGACACGCCCATGTAAGATTACTCCAGCCCGTGGTCAAGGCTATTAAAC
* * *
60393681 AGGAACGGGCGTATAGTCTACTCGTGTAAGTCATGCTTCAATCCTGCC-T-A-A-TG-GACACGC
261 AGGAACGGGCATATAGTCTACCCGTGTAAGTCATGCTTCAATCCTACCATGACACTGTGACACGC
* *
60393741 CCGTGTGAGGAAGTCCAGG-CTGTGTTGATTTCTCATGTGGGTCAATTTTCTCTATTTTCGGCCT
326 CCGTGTGAGGAAGTCCAGGTC-GTGTTGATTTCCCATGTGGGTCAATTTTCTATATTTTCGGCCT
*
60393805 ATTTCTCACTTTTTACACTCTCCTATGCTCACCTTAGTATAAAACATGAAATTAAAGGATTAGAA
390 ATTTCTCACTCTTTACACTCTCCTATGCTCACCTTAGTATAAAACATGAAATTAAAGGATTAGAA
* *
60393870 GCATTGAATTCGCCAAATCTAAGGAGAAACCATCCATAAATGTGCTAAGCATGGGACAAAAATAT
455 GCATTGAATTCACCAAATCTAAGGAGAAACCATCCATAAATGTGCTAAGCATAGGACAAAAATAT
*
60393935 GTATAAATTATGGTTTATCA
520 GTATAAATTACGGTTTATCA
60393955 AATACCCCCA
Statistics
Matches: 494, Mismatches: 38, Indels: 16
0.90 0.07 0.03
Matches are distributed among these distances:
548 1 0.00
549 206 0.42
550 2 0.00
553 1 0.00
555 1 0.00
559 1 0.00
562 105 0.21
563 177 0.36
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (555 bp):
ACCCCTGAATGGAAATTGAAGGGAGATCTTCAGTCTTGATGATGAATCCAGCTTCTGAGATGGAC
CAACCAGCTTTCCTTGAGTAATTCCTTGCCTCCTCCTCTGCGTCCTCCCTCCTAAGTGCCTCCTC
AAGTGTTTAAATAGGTTTCAGAATGCATAAGAGCCCTCAAAATTGGCCTTTTCCGAATAGAGTTA
TACTTGGGCTCGGCAGGGACACGCCCATGTAAGATTACTCCAGCCCGTGGTCAAGGCTATTAAAC
AGGAACGGGCATATAGTCTACCCGTGTAAGTCATGCTTCAATCCTACCATGACACTGTGACACGC
CCGTGTGAGGAAGTCCAGGTCGTGTTGATTTCCCATGTGGGTCAATTTTCTATATTTTCGGCCTA
TTTCTCACTCTTTACACTCTCCTATGCTCACCTTAGTATAAAACATGAAATTAAAGGATTAGAAG
CATTGAATTCACCAAATCTAAGGAGAAACCATCCATAAATGTGCTAAGCATAGGACAAAAATATG
TATAAATTACGGTTTATCAGTCTACAAACCAAGGT
Found at i:60408992 original size:278 final size:278
Alignment explanation
Indices: 60408495--60409050 Score: 1067
Period size: 278 Copynumber: 2.0 Consensus size: 278
60408485 TTGTCTTGAT
60408495 GAATGGTCATTAGGTTTCTCACCTGTCTCCTCGTCTTGAGCTGGATACGGTTCCTTCATCTCCTC
1 GAATGGTCATTAGGTTTCTCACCTGTCTCCTCGTCTTGAGCTGGATACGGTTCCTTCATCTCCTC
60408560 TTGTACAATTTCCTAAAAAGAGTCTTGAGTAATATGATCAATAGAGTCAATAAAATAACATGGAT
66 TTGTACAATTTCCTAAAAAGAGTCTTGAGTAATATGATCAATAGAGTCAATAAAATAACATGGAT
60408625 CATCCTGTTCCCTAGAGAATCTCATAGCATCGTAAATTTTAAAGATAATATCCTCGTCACCTACT
131 CATCCTGTTCCCTAGAGAATCTCATAGCATCGTAAATTTTAAAGATAATATCCTCGTCACCTACT
*
60408690 CTAAGTACCAATTTACCGTCACCCATGTCGATTACAGCTCTAGCAATGGCTAGAAATGGGCGCCC
196 CTAAGTACCAATTTACCGTCACCCATGTCGATTACAGCTCTAGCAATGGCTAGAAATGGGCACCC
60408755 TAAAATTAAGGGTACTTC
261 TAAAATTAAGGGTACTTC
60408773 GAATGGTCATTAGGTTTCTCACCTGTCTCCTCGTCTTGAGCTGGATACGGTTCCTTCATCTCCTC
1 GAATGGTCATTAGGTTTCTCACCTGTCTCCTCGTCTTGAGCTGGATACGGTTCCTTCATCTCCTC
60408838 TTGTACAATTTCCTAAAAAGAGTCTTGAGTAATATGATCAATAGAGTCAATAAAATAACATGGAT
66 TTGTACAATTTCCTAAAAAGAGTCTTGAGTAATATGATCAATAGAGTCAATAAAATAACATGGAT
60408903 CATCCTGTTCCCTAGAGAATCTCATAGCATCGTAAATTTTAAAGATAATATCCTCGTCACCTACT
131 CATCCTGTTCCCTAGAGAATCTCATAGCATCGTAAATTTTAAAGATAATATCCTCGTCACCTACT
* * * *
60408968 CTAAGTACCAATTTACCGTCACCCATGTCGATTACAGCTCTAGTAGTGGCTAGAGATGGGCATCC
196 CTAAGTACCAATTTACCGTCACCCATGTCGATTACAGCTCTAGCAATGGCTAGAAATGGGCACCC
60409033 TAAAATTAAGGGTACTTC
261 TAAAATTAAGGGTACTTC
60409051 CATATCTTCA
Statistics
Matches: 273, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
278 273 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (278 bp):
GAATGGTCATTAGGTTTCTCACCTGTCTCCTCGTCTTGAGCTGGATACGGTTCCTTCATCTCCTC
TTGTACAATTTCCTAAAAAGAGTCTTGAGTAATATGATCAATAGAGTCAATAAAATAACATGGAT
CATCCTGTTCCCTAGAGAATCTCATAGCATCGTAAATTTTAAAGATAATATCCTCGTCACCTACT
CTAAGTACCAATTTACCGTCACCCATGTCGATTACAGCTCTAGCAATGGCTAGAAATGGGCACCC
TAAAATTAAGGGTACTTC
Found at i:60414205 original size:39 final size:40
Alignment explanation
Indices: 60414160--60414327 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
60414150 CGGGGTTTAG
* * *
60414160 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
60414199 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
60414239 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
60414279 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
60414320 CCGGATAT
1 CCGGATAT
60414328 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:60414310 original size:41 final size:40
Alignment explanation
Indices: 60414183--60414327 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
60414173 CTCGCACAAG
* * * * *
60414183 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
60414223 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
60414263 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
60414304 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
60414328 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:60424583 original size:42 final size:42
Alignment explanation
Indices: 60424530--60424617 Score: 158
Period size: 42 Copynumber: 2.1 Consensus size: 42
60424520 CTAAGTCTGG
*
60424530 ATATAGTACCAGCACTAAGCCTGCGGGATTTAACCCGGATAT
1 ATATAGTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
*
60424572 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
1 ATATAGTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
60424614 ATAT
1 ATAT
60424618 TATATCGAGA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (42 bp):
ATATAGTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
Found at i:60431546 original size:110 final size:111
Alignment explanation
Indices: 60431348--60431559 Score: 417
Period size: 110 Copynumber: 1.9 Consensus size: 111
60431338 TATATGGCTT
60431348 ATACAACTAATTTAATTCACATATTTTCATACAATGACAGACATCGATCGAATAGGTCATTTCTC
1 ATACAACTAATTTAATTCACATATTTTCATACAATGACAGACATCGATCGAATAGGTCATTTCTC
60431413 TATTTCATAGATATATTAATCATTCACATAATTATATCGTTGTTTA
66 TATTTCATAGATATATTAATCATTCACATAATTATATCGTTGTTTA
60431459 ATAC-ACTAATTTAATTCACATATTTTCATACAATGACAGACATCGATCGAATAGGTCATTTCTC
1 ATACAACTAATTTAATTCACATATTTTCATACAATGACAGACATCGATCGAATAGGTCATTTCTC
60431523 TATTTCATAGATATATTAATCATTCACATAATTATAT
66 TATTTCATAGATATATTAATCATTCACATAATTATAT
60431560 TGTTATTTGA
Statistics
Matches: 101, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
110 97 0.96
111 4 0.04
ACGTcount: A:0.37, C:0.17, G:0.08, T:0.39
Consensus pattern (111 bp):
ATACAACTAATTTAATTCACATATTTTCATACAATGACAGACATCGATCGAATAGGTCATTTCTC
TATTTCATAGATATATTAATCATTCACATAATTATATCGTTGTTTA
Found at i:60431834 original size:42 final size:42
Alignment explanation
Indices: 60431772--60431901 Score: 215
Period size: 42 Copynumber: 3.1 Consensus size: 42
60431762 CCAAGTCTGC
* * *
60431772 ATATAGTACTAGCACTAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
60431814 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
* *
60431856 ATATATTACCAGCACGAAGCCTGTGGGATTTAACCCGAATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
60431898 ATAT
1 ATAT
60431902 TATATCGAGA
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 83 1.00
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (42 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
Found at i:60437805 original size:46 final size:46
Alignment explanation
Indices: 60437660--60437814 Score: 165
Period size: 46 Copynumber: 3.4 Consensus size: 46
60437650 TCCGAACTCT
* * *
60437660 TTGAGTCCG-GTTCACTTATGGATGCAAATGCCCGAACTCGTCGAG
1 TTGAGTCCGAGTTCACTCATGGATGCAAATGCTCGAACTCGTTGAG
* * * *
60437705 TTGAGTCCGAGTTCA-TGA--GATGTAACTAGGCATCCGAACTCATTGAG
1 TTGAGTCCGAGTTCACTCATGGATGCAA--ATGC-T-CGAACTCGTTGAG
* *
60437752 TTCAGTCCGAGTTCACTCATGGATGCAAATGCTCGAGCTCGTTGAG
1 TTGAGTCCGAGTTCACTCATGGATGCAAATGCTCGAACTCGTTGAG
60437798 TTGAGTCCGAGTTCACT
1 TTGAGTCCGAGTTCACT
60437815 TATTGGCGGG
Statistics
Matches: 89, Mismatches: 13, Indels: 15
0.76 0.11 0.13
Matches are distributed among these distances:
43 6 0.07
45 14 0.16
46 32 0.36
47 26 0.29
48 5 0.06
50 6 0.07
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (46 bp):
TTGAGTCCGAGTTCACTCATGGATGCAAATGCTCGAACTCGTTGAG
Found at i:60455572 original size:22 final size:20
Alignment explanation
Indices: 60455540--60455581 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
60455530 TCATTGTTGA
*
60455540 GAAATTGATGAATTAGGCTT
1 GAAATTGATGAATTAAGCTT
60455560 GAAATTGATATGAATTAAGCTT
1 GAAATTG--ATGAATTAAGCTT
60455582 AGATCATGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 7 0.37
22 12 0.63
ACGTcount: A:0.38, C:0.05, G:0.21, T:0.36
Consensus pattern (20 bp):
GAAATTGATGAATTAAGCTT
Found at i:60456203 original size:18 final size:17
Alignment explanation
Indices: 60456176--60456209 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
60456166 GATATGAGAA
*
60456176 AATTGTGAATTGATGATG
1 AATTGAGAA-TGATGATG
60456194 AATTGAGAATGATGAT
1 AATTGAGAATGATGAT
60456210 ATGTGAATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.38, C:0.00, G:0.26, T:0.35
Consensus pattern (17 bp):
AATTGAGAATGATGATG
Found at i:60458020 original size:13 final size:13
Alignment explanation
Indices: 60458002--60458029 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
60457992 GCTCGACAGG
60458002 GACACGCCCGTGT
1 GACACGCCCGTGT
60458015 GACACGCCCGTGT
1 GACACGCCCGTGT
60458028 GA
1 GA
60458030 AGAGGTCTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.18, C:0.36, G:0.32, T:0.14
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:60461443 original size:42 final size:42
Alignment explanation
Indices: 60461376--60461495 Score: 102
Period size: 42 Copynumber: 2.8 Consensus size: 42
60461366 AGTTTATGTC
*
60461376 TAAGACCATATCTGAGGCATGGCATC-AGTATGAGACTTCTTG
1 TAAGACCATATCTGAGGCATGGCATCGA-TATGAGACTTCGTG
* * * *
60461418 TAAGACCATATCT-AGGATATTGCATCGATATGATATTTCGTG
1 TAAGACCATATCTGAGG-CATGGCATCGATATGAGACTTCGTG
* * * *
60461460 TAACACCATAACTG-GGCTATTGGCATAGATACGAGA
1 TAAGACCATATCTGAGGC-A-TGGCATCGATATGAGA
60461496 TAACATGTAA
Statistics
Matches: 61, Mismatches: 12, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
41 3 0.05
42 45 0.74
43 13 0.21
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (42 bp):
TAAGACCATATCTGAGGCATGGCATCGATATGAGACTTCGTG
Found at i:60465408 original size:23 final size:23
Alignment explanation
Indices: 60465363--60465436 Score: 66
Period size: 23 Copynumber: 3.4 Consensus size: 23
60465353 CCTAGGTAAT
*
60465363 ATGTGTGAAA-C--TTATA-AAA
1 ATGTGTGAAACCTGTTATACAAC
* * *
60465382 ATGTATGAACCCTGTTATACTAC
1 ATGTGTGAAACCTGTTATACAAC
**
60465405 ATGTGCAAAACCTGTTATACAAC
1 ATGTGTGAAACCTGTTATACAAC
60465428 ATGTGTGAA
1 ATGTGTGAA
60465437 TCTTGTTTTG
Statistics
Matches: 40, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
19 8 0.20
20 1 0.03
22 5 0.12
23 26 0.65
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (23 bp):
ATGTGTGAAACCTGTTATACAAC
Found at i:60465507 original size:17 final size:17
Alignment explanation
Indices: 60465485--60465519 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
60465475 CGAACCCTTA
60465485 ACCATGGGCGAACCTAT
1 ACCATGGGCGAACCTAT
* *
60465502 ACCATGTGTGAACCTAT
1 ACCATGGGCGAACCTAT
60465519 A
1 A
60465520 TATTATGCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (17 bp):
ACCATGGGCGAACCTAT
Found at i:60465586 original size:17 final size:17
Alignment explanation
Indices: 60465547--60465603 Score: 60
Period size: 17 Copynumber: 3.4 Consensus size: 17
60465537 TATGTTGTGC
*
60465547 AAAACCCATGTTATATG
1 AAAACCCATGATATATG
**
60465564 GGAACCCATGATATATG
1 AAAACCCATGATATATG
* * *
60465581 CAAACCAATGATGTATG
1 AAAACCCATGATATATG
60465598 AAAACC
1 AAAACC
60465604 TATAAGGTTA
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
17 32 1.00
ACGTcount: A:0.42, C:0.19, G:0.16, T:0.23
Consensus pattern (17 bp):
AAAACCCATGATATATG
Found at i:60467995 original size:21 final size:21
Alignment explanation
Indices: 60467969--60468009 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
60467959 AAATAATGAC
60467969 TAAAATAGT-CCTCGACAACGG
1 TAAAATAGTCCCT-GACAACGG
60467990 TAAAATAGTCCCTGACAACG
1 TAAAATAGTCCCTGACAACG
60468010 ATGCCAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.39, C:0.24, G:0.17, T:0.20
Consensus pattern (21 bp):
TAAAATAGTCCCTGACAACGG
Found at i:60477069 original size:30 final size:30
Alignment explanation
Indices: 60477014--60477070 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
60477004 TTAATGATCA
**
60477014 AATTCAACTCTTTTTAAAATTTTGATAAAT
1 AATTCAACTCTTTTTAAAAAATTGATAAAT
60477044 AATTCAACTCTTTTTAAAAAATTGATA
1 AATTCAACTCTTTTTAAAAAATTGATA
60477071 GCTAAATTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.42, C:0.11, G:0.04, T:0.44
Consensus pattern (30 bp):
AATTCAACTCTTTTTAAAAAATTGATAAAT
Found at i:60477379 original size:20 final size:20
Alignment explanation
Indices: 60477341--60477379 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
60477331 AAAAGATTTG
*
60477341 AAATCATAGTTGTTTAAATT
1 AAATCATAGTTGTTGAAATT
60477361 AAATCATA-TTGATTGAAAT
1 AAATCATAGTTG-TTGAAAT
60477380 ATCAATCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.44, C:0.05, G:0.10, T:0.41
Consensus pattern (20 bp):
AAATCATAGTTGTTGAAATT
Found at i:60486958 original size:31 final size:31
Alignment explanation
Indices: 60486920--60486978 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
60486910 ACAAACCTAG
60486920 ATGCATAACT-GATACTATCCCCTAATGCTGA
1 ATGCATAACTGGA-ACTATCCCCTAATGCTGA
60486951 ATGCATAACTGGAACTATCCCCTAATGC
1 ATGCATAACTGGAACTATCCCCTAATGC
60486979 ATACAGTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
31 25 0.93
32 2 0.07
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (31 bp):
ATGCATAACTGGAACTATCCCCTAATGCTGA
Found at i:60488859 original size:7 final size:7
Alignment explanation
Indices: 60488847--60488871 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
60488837 TAAATATAAT
60488847 TTTTATA
1 TTTTATA
60488854 TTTTATA
1 TTTTATA
60488861 TTTTATA
1 TTTTATA
60488868 TTTT
1 TTTT
60488872 GGCTTGGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTTATA
Found at i:60488993 original size:29 final size:33
Alignment explanation
Indices: 60488947--60489015 Score: 92
Period size: 30 Copynumber: 2.2 Consensus size: 33
60488937 GTTAGTGATT
60488947 TAATATAAATATATATAATT-ATTATT-TAACA
1 TAATATAAATATATATAATTAATTATTATAACA
* *
60488978 T-ATATAATTA-ATATAATTAATTTTTATAACA
1 TAATATAAATATATATAATTAATTATTATAACA
60489009 TAATATA
1 TAATATA
60489016 TTCAGGCCGA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
29 8 0.24
30 13 0.39
31 7 0.21
32 5 0.15
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (33 bp):
TAATATAAATATATATAATTAATTATTATAACA
Found at i:60504121 original size:18 final size:18
Alignment explanation
Indices: 60504098--60504134 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
60504088 TTATTGATAC
60504098 TTTTTTTGGGAGTTGGAG
1 TTTTTTTGGGAGTTGGAG
60504116 TTTTTTTGGGAGTTGGAG
1 TTTTTTTGGGAGTTGGAG
60504134 T
1 T
60504135 GGGTGCTAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.11, C:0.00, G:0.38, T:0.51
Consensus pattern (18 bp):
TTTTTTTGGGAGTTGGAG
Found at i:60505419 original size:15 final size:16
Alignment explanation
Indices: 60505387--60505421 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
60505377 AATTTTTTTA
*
60505387 TAAAATAATATAATAT
1 TAAAATAATATAAAAT
60505403 TAAAATAA-ATAAAAT
1 TAAAATAATATAAAAT
60505418 TAAA
1 TAAA
60505422 TTGAAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
TAAAATAATATAAAAT
Found at i:60506461 original size:5 final size:5
Alignment explanation
Indices: 60506451--60506475 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
60506441 AACAATAGAG
60506451 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
60506476 AATTTATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:60510231 original size:45 final size:46
Alignment explanation
Indices: 60510083--60510351 Score: 221
Period size: 45 Copynumber: 5.8 Consensus size: 46
60510073 TTTGTGTGCT
* * * *
60510083 AGTGTAAGA-CATGTCTAGGACATGCATCGACCAC-ATTATG-AGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGA-GATGTA-AG-C
* * * * *
60510129 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCATTGAGACGAAAGC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGATGTAAGC
* *
60510176 TAGTGTAAGA-CATATTTGGGACATGCATCGGCCTCGAGATGTAAGC
1 -AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTAAGC
*
60510222 AGTGTAAGA-CATGTCTGGGACATGCATCGG-CTACGAGATGT-ATC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCT-CGAGATGTAAGC
* * *
60510266 AATGTAAGACCATGTCTGGGACATGACATCGGCAC-GGATATGTGAGAGC
1 AGTGTAAGACCATGTCTGGGACATG-CATCGGC-CTCGAGATGT-A-AGC
* *
60510315 TAGTGTAAGACCATGTCTGGGATATGGCGTCGGCCTC
1 -AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTC
60510352 AATTTCGATA
Statistics
Matches: 181, Mismatches: 26, Indels: 28
0.77 0.11 0.12
Matches are distributed among these distances:
44 12 0.07
45 51 0.28
46 38 0.21
47 26 0.14
48 20 0.11
49 5 0.03
50 28 0.15
51 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTAAGC
Found at i:60514062 original size:38 final size:38
Alignment explanation
Indices: 60513977--60514147 Score: 211
Period size: 38 Copynumber: 4.4 Consensus size: 38
60513967 ATAAAATAAA
* *
60513977 TTGTGCT-GAGATTGTATCCGGGCTTAAAGACCCGCAGGCT
1 TTGTGCTGGA-ATTATATCCGGG-TTAAA-TCCCGCAGGCT
* *
60514017 ATATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCT
1 TTGTGCTGGAATTATATCCGGGTTAAATCCCGCAGGCT
60514055 TTGTGCTGGTAA-TATATCCGGGTTAAATCCCGCAGGCT
1 TTGTGCTGG-AATTATATCCGGGTTAAATCCCGCAGGCT
* * *
60514093 TCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCC
1 TTGTGCTGGAATTATATCCGGGTTAAATCCCGCAGGCT
* *
60514131 TAGTGCTGGTATTATAT
1 TTGTGCTGGAATTATAT
60514148 ATGAGTTTAA
Statistics
Matches: 118, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
37 1 0.01
38 92 0.78
39 7 0.06
40 16 0.14
41 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (38 bp):
TTGTGCTGGAATTATATCCGGGTTAAATCCCGCAGGCT
Found at i:60514107 original size:76 final size:77
Alignment explanation
Indices: 60513991--60514185 Score: 241
Period size: 76 Copynumber: 2.5 Consensus size: 77
60513981 GCTGAGATTG
* * * *
60513991 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCT
1 TATCCGGG-TTAAAGTCCCGCAGGCT-TCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCC
*
60514055 TTGTGCTGGTAATA
64 TAGTGCTGGTAATA
60514069 TATCCGGGTTAAA-TCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCCTA
1 TATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCCTA
*
60514133 GTGCTGGTATTA
66 GTGCTGGTAATA
** * * * *
60514145 TATATGAGTTTAAAGTCTCGTAGGCTTCGTGCTGGTGTTAT
1 TATCCG-GGTTAAAGTCCCGCAGGCTTCGTGCTGGTATTAT
60514186 GTTTGGGTTT
Statistics
Matches: 102, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
75 1 0.01
76 59 0.58
77 11 0.11
78 31 0.30
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.32
Consensus pattern (77 bp):
TATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCCTA
GTGCTGGTAATA
Found at i:60514177 original size:40 final size:38
Alignment explanation
Indices: 60514007--60514185 Score: 198
Period size: 38 Copynumber: 4.7 Consensus size: 38
60513997 GGCTTAAAGA
* * *
60514007 CCCGCAGGCTAT-ATGCTGGAATTATATCCGGGTTAAAT
1 CCCGCAGGCT-TCGTGCTGGTATTATATACGGGTTAAAT
* * *
60514045 CCCGCAGGCTTTGTGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATACGGGTTAAAT
*
60514083 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATACGGGTTAAAT
* * * *
60514121 CCCGCAGGCCTAGTGCTGGTATTATATATGAGTTTAAAGT
1 CCCGCAGGCTTCGTGCTGGTATTATATACG-GGTTAAA-T
* * *
60514161 CTCGTAGGCTTCGTGCTGGTGTTAT
1 CCCGCAGGCTTCGTGCTGGTATTAT
60514186 GTTTGGGTTT
Statistics
Matches: 123, Mismatches: 15, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
37 1 0.01
38 95 0.77
39 6 0.05
40 21 0.17
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATACGGGTTAAAT
Found at i:60516739 original size:14 final size:15
Alignment explanation
Indices: 60516720--60516773 Score: 60
Period size: 15 Copynumber: 3.6 Consensus size: 15
60516710 GTTGCAATAA
60516720 ATTA-TTTTTTAAAT
1 ATTATTTTTTTAAAT
60516734 ATTATTTTTTTAAAT
1 ATTATTTTTTTAAAT
60516749 AGATTACTTTTTTTAAA-
1 --ATTA-TTTTTTTAAAT
60516766 A-TATTTTT
1 ATTATTTTT
60516774 GTTGATGTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
13 5 0.14
14 6 0.17
15 11 0.31
17 4 0.11
18 10 0.28
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (15 bp):
ATTATTTTTTTAAAT
Found at i:60516754 original size:17 final size:16
Alignment explanation
Indices: 60516719--60516765 Score: 62
Period size: 15 Copynumber: 2.9 Consensus size: 16
60516709 AGTTGCAATA
60516719 AATTA-TTTTTTAAAT
1 AATTATTTTTTTAAAT
60516734 -ATTATTTTTTTAAAT
1 AATTATTTTTTTAAAT
60516749 AGATTACTTTTTTTAAA
1 A-ATTA-TTTTTTTAAA
60516766 ATATTTTTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
14 4 0.14
15 10 0.36
17 4 0.14
18 10 0.36
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (16 bp):
AATTATTTTTTTAAAT
Found at i:60517956 original size:14 final size:14
Alignment explanation
Indices: 60517937--60517977 Score: 66
Period size: 14 Copynumber: 2.9 Consensus size: 14
60517927 TTGTTTCATT
60517937 GAAAATGACTTT-CG
1 GAAAATGA-TTTACG
60517951 GAAAATGATTTACG
1 GAAAATGATTTACG
60517965 GAAAATGATTTAC
1 GAAAATGATTTAC
60517978 TTTTCTAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
13 3 0.12
14 23 0.88
ACGTcount: A:0.41, C:0.10, G:0.20, T:0.29
Consensus pattern (14 bp):
GAAAATGATTTACG
Found at i:60518471 original size:15 final size:15
Alignment explanation
Indices: 60518431--60518474 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
60518421 ACTGCAGAAC
*
60518431 ATTTATTATTAATAT
1 ATTTATTATTAAAAT
60518446 ATTTA--A-T-AAAT
1 ATTTATTATTAAAAT
60518457 ATTTATTATTAAAAT
1 ATTTATTATTAAAAT
60518472 ATT
1 ATT
60518475 GAATATTGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 8
0.73 0.03 0.24
Matches are distributed among these distances:
11 8 0.33
12 1 0.04
13 2 0.08
14 1 0.04
15 12 0.50
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTTATTATTAAAAT
Found at i:60518479 original size:7 final size:7
Alignment explanation
Indices: 60518469--60518495 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
60518459 TTATTATTAA
60518469 AATATTG
1 AATATTG
60518476 AATATTG
1 AATATTG
60518483 AATATTG
1 AATATTG
60518490 AATATT
1 AATATT
60518496 TTTAATAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (7 bp):
AATATTG
Found at i:60518546 original size:16 final size:14
Alignment explanation
Indices: 60518515--60518555 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
60518505 ATGTGATCAA
60518515 TATTA-TTTAAAAT
1 TATTATTTTAAAAT
60518528 TATTATTTTAAAAT
1 TATTATTTTAAAAT
60518542 T-TTATTATTAAAAT
1 TATTATT-TTAAAAT
60518556 AAAATTAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.38
14 16 0.62
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
TATTATTTTAAAAT
Found at i:60518605 original size:22 final size:21
Alignment explanation
Indices: 60518559--60518620 Score: 61
Period size: 22 Copynumber: 2.9 Consensus size: 21
60518549 TTAAAATAAA
* * *
60518559 ATTAAAATATTGAATAATTTT
1 ATTAAAATAATAAATTATTTT
60518580 ATTAAAATAATAAATTATATTT
1 ATTAAAATAATAAATTAT-TTT
* * *
60518602 ATTATATTAATAATTTATT
1 ATTAAAATAATAAATTATT
60518621 ATATGATTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 16 0.47
22 18 0.53
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (21 bp):
ATTAAAATAATAAATTATTTT
Found at i:60519188 original size:55 final size:54
Alignment explanation
Indices: 60519109--60519215 Score: 187
Period size: 55 Copynumber: 2.0 Consensus size: 54
60519099 CTGTAAGGCA
*
60519109 TTTTCCATCTCCTCTTCATCCAGGTAAGTCTTCTTTTTCTTCCGTTCTTCAACT
1 TTTTCCATCTCCTCTTCATCCAGGTAAGTCTTCTTCTTCTTCCGTTCTTCAACT
*
60519163 TTTTCCATCTCCTTCTTTATCCAGGTAAGTCTTCTTCTTCTTCCGTTCTTCAA
1 TTTTCCATCTCC-TCTTCATCCAGGTAAGTCTTCTTCTTCTTCCGTTCTTCAA
60519216 ATCTCTTCCC
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
54 12 0.24
55 38 0.76
ACGTcount: A:0.13, C:0.31, G:0.07, T:0.49
Consensus pattern (54 bp):
TTTTCCATCTCCTCTTCATCCAGGTAAGTCTTCTTCTTCTTCCGTTCTTCAACT
Found at i:60520499 original size:14 final size:14
Alignment explanation
Indices: 60520476--60520512 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
60520466 AGAGAGAAAA
*
60520476 TTGGGGAAAAGCTT
1 TTGGGAAAAAGCTT
60520490 TTGGGAAAAAGCTT
1 TTGGGAAAAAGCTT
60520504 TTGGGAAAA
1 TTGGGAAAA
60520513 CTCGATTGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.35, C:0.05, G:0.32, T:0.27
Consensus pattern (14 bp):
TTGGGAAAAAGCTT
Found at i:60524171 original size:15 final size:15
Alignment explanation
Indices: 60524153--60524192 Score: 71
Period size: 15 Copynumber: 2.7 Consensus size: 15
60524143 ACTTCATTCC
*
60524153 CTTTAATCATGGTAA
1 CTTTAGTCATGGTAA
60524168 CTTTAGTCATGGTAA
1 CTTTAGTCATGGTAA
60524183 CTTTAGTCAT
1 CTTTAGTCAT
60524193 TGCTTGAGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (15 bp):
CTTTAGTCATGGTAA
Found at i:60525745 original size:27 final size:27
Alignment explanation
Indices: 60525715--60525787 Score: 83
Period size: 32 Copynumber: 2.5 Consensus size: 27
60525705 TGTCTTGAAT
*
60525715 TTGTTACATATTGATTATGTTTCAAGC
1 TTGTTAGATATTGATTATGTTTCAAGC
*
60525742 TTGTTAGATATTGAATTTATTATGTTTTAAGC
1 TTGTTAGATATTG-----ATTATGTTTCAAGC
60525774 TTGTTAGATATTGA
1 TTGTTAGATATTGA
60525788 AATAATTGAC
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
27 13 0.33
32 26 0.67
ACGTcount: A:0.27, C:0.05, G:0.16, T:0.51
Consensus pattern (27 bp):
TTGTTAGATATTGATTATGTTTCAAGC
Found at i:60525767 original size:32 final size:32
Alignment explanation
Indices: 60525728--60525788 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
60525718 TTACATATTG
60525728 ATTATGTTTCAAGCTTGTTAGATATTGAATTT
1 ATTATGTTTCAAGCTTGTTAGATATTGAATTT
*
60525760 ATTATGTTTTAAGCTTGTTAGATATTGAA
1 ATTATGTTTCAAGCTTGTTAGATATTGAA
60525789 ATAATTGACA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.30, C:0.05, G:0.16, T:0.49
Consensus pattern (32 bp):
ATTATGTTTCAAGCTTGTTAGATATTGAATTT
Found at i:60527122 original size:16 final size:18
Alignment explanation
Indices: 60527094--60527130 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
60527084 CAAACAATGA
60527094 AAATATAATAAA-TTCTT
1 AAATATAATAAATTTCTT
60527111 AAATAT-ATAAATTTCTT
1 AAATATAATAAATTTCTT
60527128 AAA
1 AAA
60527131 ACAACTTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 5 0.26
17 14 0.74
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (18 bp):
AAATATAATAAATTTCTT
Found at i:60530121 original size:18 final size:17
Alignment explanation
Indices: 60530093--60530127 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
60530083 ATTATTAAGA
*
60530093 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
60530110 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
60530128 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:60530265 original size:18 final size:17
Alignment explanation
Indices: 60530237--60530271 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
60530227 ATTATTAAGA
*
60530237 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
60530254 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
60530272 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:60530482 original size:44 final size:45
Alignment explanation
Indices: 60530433--60530527 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
60530423 TTACACCTCT
* *
60530433 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
60530477 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
60530522 ATTACA
1 ATTACA
60530528 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:60530527 original size:16 final size:16
Alignment explanation
Indices: 60530506--60530580 Score: 60
Period size: 16 Copynumber: 4.4 Consensus size: 16
60530496 TTGATTTGCT
*
60530506 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
60530522 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
*
60530538 AATCCAATATACCTCTAATCC
1 -AT----TACACCTCTAATCC
* *
60530559 AATACAGCTCTAATCC
1 ATTACACCTCTAATCC
*
60530575 AATACA
1 ATTACA
60530581 GCGAAGCAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 10
0.77 0.08 0.16
Matches are distributed among these distances:
16 33 0.67
17 2 0.04
20 1 0.02
21 13 0.27
ACGTcount: A:0.36, C:0.33, G:0.01, T:0.29
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:60530581 original size:16 final size:16
Alignment explanation
Indices: 60530538--60530582 Score: 72
Period size: 16 Copynumber: 2.8 Consensus size: 16
60530528 CCTCTAATCC
* *
60530538 AATCCAATATACCTCT
1 AATCCAATACAGCTCT
60530554 AATCCAATACAGCTCT
1 AATCCAATACAGCTCT
60530570 AATCCAATACAGC
1 AATCCAATACAGC
60530583 GAAGCAAACG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.40, C:0.31, G:0.04, T:0.24
Consensus pattern (16 bp):
AATCCAATACAGCTCT
Found at i:60530980 original size:3 final size:3
Alignment explanation
Indices: 60530972--60530998 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
60530962 TTTCTTTAAG
60530972 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
60530999 TTGTTTTAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:60536882 original size:3 final size:3
Alignment explanation
Indices: 60536874--60536898 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
60536864 CCAAAGAGAG
60536874 TGA TGA TGA TGA TGA TGA TGA TGA T
1 TGA TGA TGA TGA TGA TGA TGA TGA T
60536899 AGTGGTGGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.36
Consensus pattern (3 bp):
TGA
Found at i:60538379 original size:9 final size:9
Alignment explanation
Indices: 60538359--60538393 Score: 61
Period size: 9 Copynumber: 3.8 Consensus size: 9
60538349 ATTTATTATT
60538359 TGTTTTATAA
1 TGTTTTA-AA
60538369 TGTTTTAAA
1 TGTTTTAAA
60538378 TGTTTTAAA
1 TGTTTTAAA
60538387 TGTTTTA
1 TGTTTTA
60538394 TAATATTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 18 0.72
10 7 0.28
ACGTcount: A:0.29, C:0.00, G:0.11, T:0.60
Consensus pattern (9 bp):
TGTTTTAAA
Found at i:60544753 original size:17 final size:17
Alignment explanation
Indices: 60544731--60544771 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
60544721 AAAAGACTTA
60544731 ATATAAATAATACAT-AT
1 ATATAAATAATA-ATAAT
*
60544748 ATATAAATATTAATAAT
1 ATATAAATAATAATAAT
60544765 ATATAAA
1 ATATAAA
60544772 AGTGTTTGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 2 0.09
17 20 0.91
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (17 bp):
ATATAAATAATAATAAT
Found at i:60546814 original size:133 final size:133
Alignment explanation
Indices: 60546574--60546861 Score: 443
Period size: 133 Copynumber: 2.2 Consensus size: 133
60546564 GTATTTGAGC
* * *
60546574 CTGCTCCACTACAATTTCAGGGAGACAAGGATAGTGGCTTAAATTTGCTCCATTGTCGATACATG
1 CTGCTCCACTACAACTTCAGGGAGACAAGGATAGTGGCTTAAATCTGCTCCATTGCCGATACATG
* *
60546639 GAGATAAGATTCACCGTCTTCGATCTGTTCCACTACTGCTTAGGGAGATAAGATCTGCAACTTT-
66 GAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAA-TTTC
60546703 CAGT
130 CAGT
* * *
60546707 CTGCTCTACTACAACTTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTGCCGATACATG
1 CTGCTCCACTACAACTTCAGGGAGACAAGGATAGTGGCTTAAATCTGCTCCATTGCCGATACATG
* *
60546772 GAGATAAGATTTACCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGTAATTTCC
66 GAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATTTCC
60546837 AGT
131 AGT
* * *
60546840 ATACTCCACTACAACTTTAGGG
1 CTGCTCCACTACAACTTCAGGG
60546862 GGGATAAGAA
Statistics
Matches: 140, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
132 3 0.02
133 137 0.98
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (133 bp):
CTGCTCCACTACAACTTCAGGGAGACAAGGATAGTGGCTTAAATCTGCTCCATTGCCGATACATG
GAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATTTCC
AGT
Found at i:60546819 original size:44 final size:44
Alignment explanation
Indices: 60546638--60546825 Score: 127
Period size: 44 Copynumber: 4.2 Consensus size: 44
60546628 GTCGATACAT
* *
60546638 GGAGATAAGATTCACCGTCTTCGATCTGTTCCACTACTGCTTAG
1 GGAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTACTTAG
* * *
60546682 GGAGATAAGATCTGCAAC-T-TTC-AGTCTGCTCTACTACAACTTCAG
1 GGAGATAAGAT-T-CACCGTCTTCGA-TCTGCTCCACTACTACTT-AG
** ** * ** * * *
60546727 GGAGATAAGGCT-AGTGGCTTAAATCTGCTCCATTGCCGATAC--AT
1 GGAGATAAGATTCACCGTCTTCGATCTGCTCCACT-AC--TACTTAG
*
60546771 GGAGATAAGATTTACCGTCTTCGATCTGCTCCACTACTACTTAG
1 GGAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTACTTAG
60546815 GGAGATAAGAT
1 GGAGATAAGAT
60546826 CTGTAATTTC
Statistics
Matches: 105, Mismatches: 26, Indels: 26
0.67 0.17 0.17
Matches are distributed among these distances:
42 4 0.04
43 1 0.01
44 64 0.61
45 31 0.30
46 3 0.03
47 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (44 bp):
GGAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTACTTAG
Found at i:60546981 original size:89 final size:87
Alignment explanation
Indices: 60546682--60546985 Score: 216
Period size: 89 Copynumber: 3.4 Consensus size: 87
60546672 TACTGCTTAG
* * * * * *
60546682 GGAGATAAGATCTGCAACTTTCAGTCTGCTCTACTACAACTTCAGGGAGATAAGGCTAGTGGCTT
1 GGAGATAAGATTTCCATC-TTCAATCTGCTCCACTACAACTTTAGGGAGATAAGGCT-GTGGCTT
60546747 AAATCTGCTCCATTGCCGATACAT
64 AAATCTGCTCCATTGCCGATACAT
* * * * ***
60546771 GGAGATAAGATTTACCGTCTTCGATCTGCTCCACTACTAC-TTAGGGAGATAAGATCTGTAATTT
1 GGAGATAAGATTT-CCATCTTCAATCTGCTCCACTACAACTTTAGGGAGATAAG-GCTGTGGCTT
* * * * * * ** **
60546835 CCAGTATACTCCACTACAACTTTA-GG
64 -AAATCTGCTCCATTGC--CGATACAT
* * ** * * * *
60546861 GGGGATAAGAATTATATCTTGAACCTTCTCCACTGCAACTTTAGGGAGATAAGGCTGGTGGCTTA
1 GGAGATAAGATTTCCATCTTCAATCTGCTCCACTACAACTTTAGGGAGATAAGGCT-GTGGCTTA
*
60546926 AATCTGCTCTATTGCCGATACAT
65 AATCTGCTCCATTGCCGATACAT
*
60546949 GGAGATAAGATTTGCCATCTTCTATCTGCTCCACTAC
1 GGAGATAAGATTT-CCATCTTCAATCTGCTCCACTAC
60546986 TGCTTAGGCA
Statistics
Matches: 148, Mismatches: 58, Indels: 18
0.66 0.26 0.08
Matches are distributed among these distances:
87 3 0.02
88 27 0.18
89 85 0.57
90 30 0.20
91 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (87 bp):
GGAGATAAGATTTCCATCTTCAATCTGCTCCACTACAACTTTAGGGAGATAAGGCTGTGGCTTAA
ATCTGCTCCATTGCCGATACAT
Found at i:60553493 original size:20 final size:20
Alignment explanation
Indices: 60553456--60553493 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
60553446 TGATGGGGAG
*
60553456 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
60553476 CAAGAA-ATCGAAGCTGGA
1 CAAGAATATC-AAGCTGGA
60553494 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Found at i:60560786 original size:26 final size:24
Alignment explanation
Indices: 60560754--60560803 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
60560744 TAAATAAAAA
*
60560754 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
60560780 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
60560804 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:60560823 original size:21 final size:21
Alignment explanation
Indices: 60560774--60560832 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
60560764 ATAATAAATC
*
60560774 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
60560794 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
60560816 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
60560833 TTCTTAAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:60562865 original size:19 final size:17
Alignment explanation
Indices: 60562843--60562885 Score: 59
Period size: 19 Copynumber: 2.4 Consensus size: 17
60562833 AAAAGACTTA
60562843 ATATAAATAATACATATAT
1 ATATAAATAATA-ATA-AT
*
60562862 ATATAAATATTAATAAT
1 ATATAAATAATAATAAT
60562879 ATATAAA
1 ATATAAA
60562886 AGTGTTTGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 9 0.39
18 3 0.13
19 11 0.48
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (17 bp):
ATATAAATAATAATAAT
Found at i:60563055 original size:13 final size:13
Alignment explanation
Indices: 60563037--60563066 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
60563027 AAAATGGAAC
60563037 AAAATAACATGTT
1 AAAATAACATGTT
*
60563050 AAAATAATATGTT
1 AAAATAACATGTT
60563063 AAAA
1 AAAA
60563067 AGATGAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.30
Consensus pattern (13 bp):
AAAATAACATGTT
Found at i:60568041 original size:14 final size:15
Alignment explanation
Indices: 60568024--60568053 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
60568014 CGTTATTCAA
60568024 AAAATAT-ATTTTAC
1 AAAATATAATTTTAC
60568038 AAAATATAATTTTAC
1 AAAATATAATTTTAC
60568053 A
1 A
60568054 TTTCAAACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (15 bp):
AAAATATAATTTTAC
Found at i:60568782 original size:14 final size:15
Alignment explanation
Indices: 60568747--60568784 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
60568737 AATATTATTT
60568747 TTAAAAAAAATTAAA
1 TTAAAAAAAATTAAA
60568762 -TACAAAAAAA-TAAA
1 TTA-AAAAAAATTAAA
60568776 TTAAAAAAA
1 TTAAAAAAA
60568785 GTACTGACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (15 bp):
TTAAAAAAAATTAAA
Done.