Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 102024878
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 3234766 characters in sequence are not A, C, G, or T
File 196 of 310
Found at i:64143332 original size:21 final size:21
Alignment explanation
Indices: 64143287--64143332 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
64143277 TATAAATTTG
* *
64143287 AAAAATATTATTAAAATTTAT
1 AAAAATATTAATAAAATTCAT
64143308 AAAAATATTAAATAAAATTCA-
1 AAAAATATT-AATAAAATTCAT
64143329 AAAA
1 AAAA
64143333 GTTAATAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 13 0.59
22 9 0.41
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (21 bp):
AAAAATATTAATAAAATTCAT
Found at i:64148495 original size:16 final size:16
Alignment explanation
Indices: 64148466--64148507 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
64148456 TTCTCCCCTA
**
64148466 CCTCTTCTTTTCTCTTC
1 CCTCTTCTCCTCTC-TC
64148483 CCT-TTCTCCTCTCTC
1 CCTCTTCTCCTCTCTC
64148498 CCTCTTCTCC
1 CCTCTTCTCC
64148508 CCCTAAGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 5 0.23
16 14 0.64
17 3 0.14
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (16 bp):
CCTCTTCTCCTCTCTC
Found at i:64148742 original size:6 final size:6
Alignment explanation
Indices: 64148731--64148757 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
64148721 AGTCCCTTTA
64148731 TTTTCT TTTTCT TTTTCT TTTTCT TTT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTT
64148758 ATTTTCTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTCT
Found at i:64148767 original size:18 final size:18
Alignment explanation
Indices: 64148731--64148777 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
64148721 AGTCCCTTTA
*
64148731 TTTTCTTTTTCTTTTTCT
1 TTTTCTTTTTCTTTCTCT
64148749 TTTTCTTTTAT-TTTCTCT
1 TTTTCTTTT-TCTTTCTCT
*
64148767 TATTTATTTTT
1 T-TTTCTTTTT
64148778 GAAGATTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 17 0.68
19 8 0.32
ACGTcount: A:0.06, C:0.13, G:0.00, T:0.81
Consensus pattern (18 bp):
TTTTCTTTTTCTTTCTCT
Found at i:64159566 original size:46 final size:49
Alignment explanation
Indices: 64159460--64159581 Score: 151
Period size: 50 Copynumber: 2.5 Consensus size: 49
64159450 TGTCTTCGAC
** * *
64159460 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATATATATCTAAT
* *
64159510 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATAT-T-TGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATCTAAT
*
64159556 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
64159582 CTGTCCTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 27 0.42
47 1 0.02
48 6 0.09
50 30 0.47
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (49 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATCTAAT
Found at i:64159587 original size:5 final size:5
Alignment explanation
Indices: 64159577--64159606 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
64159567 TGGCTCATTT
64159577 CTGTC CTGTC CTGTC CTGTC CTGTC CTGTC
1 CTGTC CTGTC CTGTC CTGTC CTGTC CTGTC
64159607 AACCCCAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.00, C:0.40, G:0.20, T:0.40
Consensus pattern (5 bp):
CTGTC
Found at i:64162586 original size:39 final size:39
Alignment explanation
Indices: 64162529--64162605 Score: 127
Period size: 39 Copynumber: 2.0 Consensus size: 39
64162519 AATAATATTC
64162529 AGTTTGAACATACACTCATACATATACCATTTCCCTACG
1 AGTTTGAACATACACTCATACATATACCATTTCCCTACG
* * *
64162568 AGTTTGAACATGCTCTCATACATATACCCTTTCCCTAC
1 AGTTTGAACATACACTCATACATATACCATTTCCCTAC
64162606 AAAAATTCCT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (39 bp):
AGTTTGAACATACACTCATACATATACCATTTCCCTACG
Found at i:64169297 original size:29 final size:28
Alignment explanation
Indices: 64169255--64169309 Score: 101
Period size: 29 Copynumber: 1.9 Consensus size: 28
64169245 GAGTTATACC
64169255 GATTTGGCTTCGGGCCATGAATATCAGCT
1 GATTTGGCTTCGGGCCAT-AATATCAGCT
64169284 GATTTGGCTTCGGGCCATAATATCAG
1 GATTTGGCTTCGGGCCATAATATCAG
64169310 TATATCGGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
28 8 0.31
29 18 0.69
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (28 bp):
GATTTGGCTTCGGGCCATAATATCAGCT
Found at i:64172043 original size:6 final size:6
Alignment explanation
Indices: 64172032--64172060 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
64172022 CTTTTCTGCA
64172032 AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
64172061 GATTTCAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:64174599 original size:16 final size:17
Alignment explanation
Indices: 64174564--64174597 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
64174554 TTGTTTTCAA
64174564 TTATCCTAATTACATTT
1 TTATCCTAATTACATTT
64174581 TTATCCT-ATTA-ATTT
1 TTATCCTAATTACATTT
64174596 TT
1 TT
64174598 TACATGAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.35
16 4 0.24
17 7 0.41
ACGTcount: A:0.26, C:0.15, G:0.00, T:0.59
Consensus pattern (17 bp):
TTATCCTAATTACATTT
Found at i:64175676 original size:13 final size:13
Alignment explanation
Indices: 64175658--64175683 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
64175648 AGATGGGAAC
64175658 CTTCTTTTATATA
1 CTTCTTTTATATA
64175671 CTTCTTTTATATA
1 CTTCTTTTATATA
64175684 TTATATATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.00, T:0.62
Consensus pattern (13 bp):
CTTCTTTTATATA
Found at i:64177443 original size:33 final size:33
Alignment explanation
Indices: 64177405--64177471 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
64177395 ATTCAAGCCA
64177405 CATTTAAAACAATGAACGTCCGTAATCATCAAG
1 CATTTAAAACAATGAACGTCCGTAATCATCAAG
* *
64177438 CATTTAGAACAATGAACGTCCGTAATTATCAAG
1 CATTTAAAACAATGAACGTCCGTAATCATCAAG
64177471 C
1 C
64177472 GATGGAGTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.40, C:0.21, G:0.13, T:0.25
Consensus pattern (33 bp):
CATTTAAAACAATGAACGTCCGTAATCATCAAG
Found at i:64178385 original size:7 final size:7
Alignment explanation
Indices: 64178369--64178405 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
64178359 GTCAAATTTG
64178369 AATA-TA
1 AATATTA
64178375 AATATTA
1 AATATTA
64178382 AATATTA
1 AATATTA
64178389 AATATTA
1 AATATTA
*
64178396 AAAATTA
1 AATATTA
64178403 AAT
1 AAT
64178406 GTGAGCATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
6 4 0.14
7 24 0.86
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (7 bp):
AATATTA
Found at i:64180516 original size:23 final size:24
Alignment explanation
Indices: 64180490--64180536 Score: 87
Period size: 23 Copynumber: 2.0 Consensus size: 24
64180480 TTTTTAAAAA
64180490 ATCACAAATAGAG-TTTTTTCTAT
1 ATCACAAATAGAGTTTTTTTCTAT
64180513 ATCACAAATAGAGTTTTTTTCTAT
1 ATCACAAATAGAGTTTTTTTCTAT
64180537 CATTATAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 13 0.57
24 10 0.43
ACGTcount: A:0.34, C:0.13, G:0.09, T:0.45
Consensus pattern (24 bp):
ATCACAAATAGAGTTTTTTTCTAT
Found at i:64184766 original size:21 final size:21
Alignment explanation
Indices: 64184740--64184788 Score: 98
Period size: 21 Copynumber: 2.3 Consensus size: 21
64184730 GTGCTTGCAA
64184740 TGGATGTGTTATCCAGGTTAT
1 TGGATGTGTTATCCAGGTTAT
64184761 TGGATGTGTTATCCAGGTTAT
1 TGGATGTGTTATCCAGGTTAT
64184782 TGGATGT
1 TGGATGT
64184789 TGCTGCCACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.18, C:0.08, G:0.31, T:0.43
Consensus pattern (21 bp):
TGGATGTGTTATCCAGGTTAT
Found at i:64186033 original size:12 final size:12
Alignment explanation
Indices: 64185997--64186035 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
64185987 AATTTGTTGG
64185997 TTTTTTACTGTT
1 TTTTTTACTGTT
**
64186009 TTTTGTTGTTGTT
1 TTTT-TTACTGTT
64186022 TTTTTTACTGTT
1 TTTTTTACTGTT
64186034 TT
1 TT
64186036 GTTGCTATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
12 12 0.55
13 10 0.45
ACGTcount: A:0.05, C:0.05, G:0.13, T:0.77
Consensus pattern (12 bp):
TTTTTTACTGTT
Found at i:64186046 original size:23 final size:23
Alignment explanation
Indices: 64185997--64186068 Score: 65
Period size: 22 Copynumber: 3.1 Consensus size: 23
64185987 AATTTGTTGG
* *
64185997 TTTTTTACTGTTTTTTGTTGTTGTT
1 TTTTTTACTG--TTTTGTTGCTATT
64186022 TTTTTTACTGTTTTGTTGCTA-T
1 TTTTTTACTGTTTTGTTGCTATT
* * * *
64186044 TTTCTTATTGTTTTTTTACTATT
1 TTTTTTACTGTTTTGTTGCTATT
64186067 TT
1 TT
64186069 GCTACCATTT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
22 18 0.45
23 12 0.30
25 10 0.25
ACGTcount: A:0.08, C:0.07, G:0.11, T:0.74
Consensus pattern (23 bp):
TTTTTTACTGTTTTGTTGCTATT
Found at i:64187676 original size:19 final size:19
Alignment explanation
Indices: 64187652--64187696 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
64187642 TTTGATCAAG
64187652 TAAAATTAAATT-AAATTAA
1 TAAAA-TAAATTAAAATTAA
*
64187671 TAAAATCAATTAAAATTAA
1 TAAAATAAATTAAAATTAA
*
64187690 TATAATA
1 TAAAATA
64187697 TTTTTGGAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 5 0.23
19 17 0.77
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (19 bp):
TAAAATAAATTAAAATTAA
Found at i:64188314 original size:29 final size:29
Alignment explanation
Indices: 64188281--64188340 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 29
64188271 TAGGAATAGG
*
64188281 AAATTCCATTAGGATATCTTAGGTTAGTT
1 AAATTCCATTAGGATATCTTAGGTTAATT
* * *
64188310 AAATTCCATTAGGTTATGTTTGGTTAATT
1 AAATTCCATTAGGATATCTTAGGTTAATT
64188339 AA
1 AA
64188341 TTTAATTAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.32, C:0.08, G:0.17, T:0.43
Consensus pattern (29 bp):
AAATTCCATTAGGATATCTTAGGTTAATT
Found at i:64195963 original size:40 final size:40
Alignment explanation
Indices: 64195880--64196862 Score: 831
Period size: 40 Copynumber: 24.6 Consensus size: 40
64195870 TTGAATGCTG
* * * * *
64195880 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGA-T-ACTAAA
* * *
64195920 TCCGGACTAAGAT-CCGAAGGCCTTTGTTCGAGATACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTCGTGCGAGATACTAAA
** * *
64195960 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
** * * *
64196000 TCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
** * * *
64196040 TCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
** * * *
64196080 TCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
** * * *
64196120 TCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
** * * *
64196160 TCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
** * * *
64196200 TCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
** * * *
64196240 TCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
** * * *
64196280 TCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
** * * *
64196320 TCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
** * * *
64196360 TCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
** * * *
64196400 TCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
** * * *
64196440 TCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
** * * *
64196480 TCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
** * * *
64196520 TCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
** * * *
64196560 TCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
** * * *
64196600 TCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
** * * *
64196640 TCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
** * * *
64196680 TCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
** * * *
64196720 TCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
** * **
64196760 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
** * * *
64196800 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
* * *
64196839 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGACTAAGTCCCGAAGGCATT
64196863 TGAACGAGGA
Statistics
Matches: 918, Mismatches: 21, Indels: 9
0.97 0.02 0.01
Matches are distributed among these distances:
39 35 0.04
40 873 0.95
41 9 0.01
42 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
Found at i:64196020 original size:80 final size:80
Alignment explanation
Indices: 64195956--64196862 Score: 1708
Period size: 80 Copynumber: 11.3 Consensus size: 80
64195946 TTCGAGATAC
*
64195956 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
1 TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
64196021 ATTCGTGCGAGTTAT
66 ATTCGTGCGAGTTAT
64196036 TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
1 TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
64196101 ATTCGTGCGAGTTAT
66 ATTCGTGCGAGTTAT
64196116 TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
1 TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
64196181 ATTCGTGCGAGTTAT
66 ATTCGTGCGAGTTAT
64196196 TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
1 TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
64196261 ATTCGTGCGAGTTAT
66 ATTCGTGCGAGTTAT
64196276 TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
1 TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
64196341 ATTCGTGCGAGTTAT
66 ATTCGTGCGAGTTAT
64196356 TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
1 TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
64196421 ATTCGTGCGAGTTAT
66 ATTCGTGCGAGTTAT
64196436 TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
1 TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
64196501 ATTCGTGCGAGTTAT
66 ATTCGTGCGAGTTAT
64196516 TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
1 TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
64196581 ATTCGTGCGAGTTAT
66 ATTCGTGCGAGTTAT
64196596 TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
1 TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
64196661 ATTCGTGCGAGTTAT
66 ATTCGTGCGAGTTAT
64196676 TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
1 TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
64196741 ATTCGTGCGAGTTAT
66 ATTCGTGCGAGTTAT
* * * *
64196756 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
* *
64196821 ATT-GTGTGAGTTAC
66 ATTCGTGCGAGTTAT
* * * *
64196835 TAAAACCGGGCTATGTCCCGAAGGCATT
1 TAAATCCGGGTTAAGTCCCAAAGGCATT
64196863 TGAACGAGGA
Statistics
Matches: 817, Mismatches: 10, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
79 34 0.04
80 783 0.96
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (80 bp):
TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
ATTCGTGCGAGTTAT
Found at i:64196094 original size:120 final size:120
Alignment explanation
Indices: 64195956--64196862 Score: 1708
Period size: 120 Copynumber: 7.6 Consensus size: 120
64195946 TTCGAGATAC
*
64195956 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
1 TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
64196021 ATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTAT
66 ATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTAT
64196076 TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
1 TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
64196141 ATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTAT
66 ATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTAT
64196196 TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
1 TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
64196261 ATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTAT
66 ATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTAT
64196316 TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
1 TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
64196381 ATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTAT
66 ATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTAT
64196436 TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
1 TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
64196501 ATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTAT
66 ATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTAT
64196556 TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
1 TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
64196621 ATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTAT
66 ATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTAT
64196676 TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
1 TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
* *
64196741 ATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGT
66 ATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTAT
* * * * * * * *
64196796 TAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
64196860 ATT
66 ATT
64196863 TGAACGAGGA
Statistics
Matches: 776, Mismatches: 11, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
119 33 0.04
120 743 0.96
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (120 bp):
TAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGC
ATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTAT
Found at i:64210403 original size:15 final size:15
Alignment explanation
Indices: 64210383--64210414 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
64210373 TTTATTAATA
64210383 AAATGTACAAGGATT
1 AAATGTACAAGGATT
64210398 AAATGTACAAGGATT
1 AAATGTACAAGGATT
64210413 AA
1 AA
64210415 GTACTCAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.50, C:0.06, G:0.19, T:0.25
Consensus pattern (15 bp):
AAATGTACAAGGATT
Found at i:64218938 original size:59 final size:59
Alignment explanation
Indices: 64218838--64218955 Score: 173
Period size: 59 Copynumber: 2.0 Consensus size: 59
64218828 CATTGATTTA
*
64218838 TTTTTGAATATTTTTGTACAAATTATTTTTAAATTGCTTCATCTAATAAAATAGAAGTT
1 TTTTTGAATATGTTTGTACAAATTATTTTTAAATTGCTTCATCTAATAAAATAGAAGTT
* * * * * *
64218897 TTTTTGAATATGTTTGTGCAAATTATTTTTATATTGTTTCATTTAATAAATTAGGAGTT
1 TTTTTGAATATGTTTGTACAAATTATTTTTAAATTGCTTCATCTAATAAAATAGAAGTT
64218956 ACTTCGATGT
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
59 52 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.52
Consensus pattern (59 bp):
TTTTTGAATATGTTTGTACAAATTATTTTTAAATTGCTTCATCTAATAAAATAGAAGTT
Found at i:64224487 original size:5 final size:5
Alignment explanation
Indices: 64224479--64224553 Score: 55
Period size: 5 Copynumber: 14.2 Consensus size: 5
64224469 CTTTTCTTTC
*
64224479 TTTAT TTTAT TTTAT TTTAT CTTTA- TTTA- TTTATT TATTAT GCTTATT
1 TTTAT TTTAT TTTAT TTTAT -TTTAT TTTAT TTTA-T T-TTAT -TTTA-T
* *
64224527 TGTTAT ATTAA TTTAT TTTAT TTTAT T
1 T-TTAT TTTAT TTTAT TTTAT TTTAT T
64224554 CCTGTATTTT
Statistics
Matches: 57, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
4 8 0.14
5 32 0.56
6 10 0.18
7 7 0.12
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.72
Consensus pattern (5 bp):
TTTAT
Found at i:64225427 original size:23 final size:23
Alignment explanation
Indices: 64225401--64225444 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
64225391 CTTACAGCAA
64225401 GTGATGTCGACCCATAACAAGAC
1 GTGATGTCGACCCATAACAAGAC
*
64225424 GTGATGTCGACCCATGACAAG
1 GTGATGTCGACCCATAACAAG
64225445 CCGGGCACTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.32, C:0.25, G:0.25, T:0.18
Consensus pattern (23 bp):
GTGATGTCGACCCATAACAAGAC
Found at i:64226315 original size:6 final size:6
Alignment explanation
Indices: 64226306--64226362 Score: 69
Period size: 6 Copynumber: 9.0 Consensus size: 6
64226296 TTTCTTTTCA
* *
64226306 TTTTAG TTTTAT TTTTAT TTTTAT CTTTAT TTTTAT TTTTAGT TATTTAAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTA-T T-TTT-AT
64226357 TTTTAT
1 TTTTAT
64226363 GTTCTTAAAC
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
6 34 0.76
7 5 0.11
8 5 0.11
9 1 0.02
ACGTcount: A:0.19, C:0.02, G:0.04, T:0.75
Consensus pattern (6 bp):
TTTTAT
Found at i:64227351 original size:12 final size:13
Alignment explanation
Indices: 64227334--64227365 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
64227324 CTGATTGTTC
64227334 AGAAAAAAAA-CA
1 AGAAAAAAAATCA
64227346 AGAAAAAAAATCA
1 AGAAAAAAAATCA
64227359 A-AAAAAA
1 AGAAAAAA
64227366 TATATATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 16 0.84
13 3 0.16
ACGTcount: A:0.84, C:0.06, G:0.06, T:0.03
Consensus pattern (13 bp):
AGAAAAAAAATCA
Found at i:64234326 original size:6 final size:6
Alignment explanation
Indices: 64234315--64234365 Score: 66
Period size: 6 Copynumber: 8.0 Consensus size: 6
64234305 GTTTAAGAAC
*
64234315 ATAAAA ATAAAACA ACTAAAA ATAAAA ATAAAA ATAAAG ATAAAA ATAAAA
1 ATAAAA AT-AAA-A A-TAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
64234366 CTATAACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
6 29 0.73
7 5 0.12
8 5 0.12
9 1 0.03
ACGTcount: A:0.78, C:0.04, G:0.02, T:0.16
Consensus pattern (6 bp):
ATAAAA
Found at i:64234390 original size:42 final size:39
Alignment explanation
Indices: 64234315--64234396 Score: 101
Period size: 42 Copynumber: 2.0 Consensus size: 39
64234305 GTTTAAGAAC
* *
64234315 ATAAAAATAAAACAACTAAAAATAAAAATAAAAATAAAG
1 ATAAAAATAAAACAACTAAAAATAAAAAGAAAAAAAAAG
* *
64234354 ATAAAAATAAAACTATAACTATAACTAAAAAGAAAAAAAAAG
1 ATAAAAATAAAAC---AACTAAAAATAAAAAGAAAAAAAAAG
64234396 A
1 A
64234397 AATAAACTCA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
39 13 0.36
42 23 0.64
ACGTcount: A:0.74, C:0.06, G:0.04, T:0.16
Consensus pattern (39 bp):
ATAAAAATAAAACAACTAAAAATAAAAAGAAAAAAAAAG
Found at i:64239529 original size:67 final size:67
Alignment explanation
Indices: 64239421--64240361 Score: 1882
Period size: 67 Copynumber: 14.0 Consensus size: 67
64239411 AGATTTAATG
64239421 TTTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGTAGATGATTTTGACATTATATG
1 TTTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGTAGATGATTTTGACATTATATG
64239486 AT
66 AT
64239488 TTTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGTAGATGATTTTGACATTATATG
1 TTTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGTAGATGATTTTGACATTATATG
64239553 AT
66 AT
64239555 TTTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGTAGATGATTTTGACATTATATG
1 TTTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGTAGATGATTTTGACATTATATG
64239620 AT
66 AT
64239622 TTTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGTAGATGATTTTGACATTATATG
1 TTTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGTAGATGATTTTGACATTATATG
64239687 AT
66 AT
64239689 TTTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGTAGATGATTTTGACATTATATG
1 TTTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGTAGATGATTTTGACATTATATG
64239754 AT
66 AT
64239756 TTTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGTAGATGATTTTGACATTATATG
1 TTTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGTAGATGATTTTGACATTATATG
64239821 AT
66 AT
64239823 TTTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGTAGATGATTTTGACATTATATG
1 TTTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGTAGATGATTTTGACATTATATG
64239888 AT
66 AT
64239890 TTTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGTAGATGATTTTGACATTATATG
1 TTTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGTAGATGATTTTGACATTATATG
64239955 AT
66 AT
64239957 TTTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGTAGATGATTTTGACATTATATG
1 TTTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGTAGATGATTTTGACATTATATG
64240022 AT
66 AT
64240024 TTTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGTAGATGATTTTGACATTATATG
1 TTTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGTAGATGATTTTGACATTATATG
64240089 AT
66 AT
64240091 TTTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGTAGATGATTTTGACATTATATG
1 TTTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGTAGATGATTTTGACATTATATG
64240156 AT
66 AT
64240158 TTTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGTAGATGATTTTGACATTATATG
1 TTTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGTAGATGATTTTGACATTATATG
64240223 AT
66 AT
64240225 TTTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGTAGATGATTTTGACATTATATG
1 TTTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGTAGATGATTTTGACATTATATG
64240290 AT
66 AT
64240292 TTTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGTAGATGATTTTGACATTATATG
1 TTTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGTAGATGATTTTGACATTATATG
64240357 AT
66 AT
64240359 TTT
1 TTT
64240362 GGTATATGCA
Statistics
Matches: 874, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 874 1.00
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.39
Consensus pattern (67 bp):
TTTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGTAGATGATTTTGACATTATATG
AT
Found at i:64244183 original size:28 final size:28
Alignment explanation
Indices: 64244151--64244215 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
64244141 ATTTACTAGA
*
64244151 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
64244179 ATACCCCTATGTATGCTAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
64244207 ATACCCCTA
1 ATACCCCTA
64244216 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:64244379 original size:27 final size:27
Alignment explanation
Indices: 64244318--64244410 Score: 125
Period size: 28 Copynumber: 3.3 Consensus size: 27
64244308 TGGAGGAAGC
64244318 GTTCTGGTGGCTA-TGCCACAAATTATCT
1 GTTCTGGTGGC-ACTGCCACAAA-TATCT
* *
64244346 GTTCTGGTGGCCCTGCCACATATATCT
1 GTTCTGGTGGCACTGCCACAAATATCT
64244373 GTTCTGGTGGCACTGCCACAAAATATCT
1 GTTCTGGTGGCACTGCCAC-AAATATCT
64244401 GTATCTGGTG
1 GT-TCTGGTG
64244411 ACTCTGTCAC
Statistics
Matches: 58, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
27 23 0.40
28 28 0.48
29 7 0.12
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.33
Consensus pattern (27 bp):
GTTCTGGTGGCACTGCCACAAATATCT
Found at i:64244429 original size:55 final size:55
Alignment explanation
Indices: 64244318--64244435 Score: 150
Period size: 55 Copynumber: 2.1 Consensus size: 55
64244308 TGGAGGAAGC
* *
64244318 GTTCTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCT
* * *
64244373 GTTCTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCT
1 GTTCTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCT
64244428 GTATCTGG
1 GT-TCTGG
64244436 CAGCCATGCT
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 33 0.60
56 21 0.38
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (55 bp):
GTTCTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCT
Found at i:64244902 original size:18 final size:18
Alignment explanation
Indices: 64244864--64244903 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
64244854 TAATAAGGCC
* *
64244864 TTTAATTATTTTTATGGT
1 TTTAATTACTTTTATGAT
*
64244882 TTTAATTACTTTTATTAT
1 TTTAATTACTTTTATGAT
64244900 TTTA
1 TTTA
64244904 TTTTACTATG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.25, C:0.03, G:0.05, T:0.68
Consensus pattern (18 bp):
TTTAATTACTTTTATGAT
Found at i:64252061 original size:28 final size:28
Alignment explanation
Indices: 64252029--64252093 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
64252019 ATTTACTAGA
*
64252029 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
64252057 ATACCCCTATGTATGCTAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
64252085 ATACCCCTA
1 ATACCCCTA
64252094 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:64252240 original size:28 final size:27
Alignment explanation
Indices: 64252199--64252288 Score: 94
Period size: 28 Copynumber: 3.2 Consensus size: 27
64252189 AGGAAGCGTC
64252199 CTGGTGG-CTATGCAACAAATTATCTGTT
1 CTGGTGGCCT-TGCAACAAA-TATCTGTT
* *
64252227 CTGGTGGCCTTGCAACATATATCAGTT
1 CTGGTGGCCTTGCAACAAATATCTGTT
*
64252254 CTGGTGGCAC-TGCCACAAAATATCTGTAT
1 CTGGTGGC-CTTGCAAC-AAATATCTGT-T
64252283 CTGGTG
1 CTGGTG
64252289 ACTCTGTCAC
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
27 20 0.38
28 24 0.45
29 9 0.17
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCCTTGCAACAAATATCTGTT
Found at i:64252257 original size:27 final size:29
Alignment explanation
Indices: 64252199--64252261 Score: 87
Period size: 27 Copynumber: 2.3 Consensus size: 29
64252189 AGGAAGCGTC
*
64252199 CTGGTGG-CTATGCAACAAATTATCTGTT
1 CTGGTGGCCTATGCAACAAATTATCAGTT
*
64252227 CTGGTGGCCT-TGCAACATA-TATCAGTT
1 CTGGTGGCCTATGCAACAAATTATCAGTT
64252254 CTGGTGGC
1 CTGGTGGC
64252262 ACTGCCACAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
27 15 0.47
28 15 0.47
29 2 0.06
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.33
Consensus pattern (29 bp):
CTGGTGGCCTATGCAACAAATTATCAGTT
Found at i:64252299 original size:29 final size:28
Alignment explanation
Indices: 64252245--64252299 Score: 65
Period size: 29 Copynumber: 1.9 Consensus size: 28
64252235 CTTGCAACAT
*
64252245 ATATCAGTTCTGGTGGCACTGCCACAAA
1 ATATCAGTTCTGGTGACACTGCCACAAA
* * *
64252273 ATATCTGTATCTGGTGACTCTGTCACA
1 ATATCAGT-TCTGGTGACACTGCCACA
64252300 TTTTCTGTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
28 7 0.32
29 15 0.68
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (28 bp):
ATATCAGTTCTGGTGACACTGCCACAAA
Found at i:64252781 original size:18 final size:18
Alignment explanation
Indices: 64252742--64252782 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
64252732 TAATAAGGCC
* *
64252742 TTTTAATTATTTTTATGG
1 TTTTAATTACTTTTATGA
*
64252760 TTTTAATTACTTTTATTA
1 TTTTAATTACTTTTATGA
64252778 TTTTA
1 TTTTA
64252783 TTTTACTATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.68
Consensus pattern (18 bp):
TTTTAATTACTTTTATGA
Found at i:64255074 original size:23 final size:23
Alignment explanation
Indices: 64255043--64255088 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
64255033 AAATTGAAAA
64255043 TTTTTTAAAAGTT-TAAAA-ATAT
1 TTTTTTAAAA-TTCTAAAATATAT
64255065 TTTTTATAAAATTCTAAAATATAT
1 TTTTT-TAAAATTCTAAAATATAT
64255089 AAATTTTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 7 0.33
23 10 0.48
24 4 0.19
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (23 bp):
TTTTTTAAAATTCTAAAATATAT
Found at i:64255083 original size:22 final size:21
Alignment explanation
Indices: 64255042--64255088 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 21
64255032 GAAATTGAAA
*
64255042 ATTTTTTAAAAGTTTAAAAAT
1 ATTTTTTAAAAATTTAAAAAT
64255063 ATTTTTTATAAAATTCTAAAATAT
1 ATTTTTTA-AAAATT-TAAAA-AT
64255087 AT
1 AT
64255089 AAATTTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 8 0.36
22 5 0.23
23 5 0.23
24 4 0.18
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (21 bp):
ATTTTTTAAAAATTTAAAAAT
Found at i:64257250 original size:40 final size:39
Alignment explanation
Indices: 64257162--64257369 Score: 224
Period size: 40 Copynumber: 5.2 Consensus size: 39
64257152 CTCGTTCAAT
* * * * *
64257162 TGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AA
1 TGCCTTCGGGA-TTAACCCGGATTTAGTATCTCGCACAAA
** * *
64257201 TGCCTTCGGGATATAACCCGGATTTAACAACTCGCACGAA
1 TGCCTTCGGGAT-TAACCCGGATTTAGTATCTCGCACAAA
64257241 TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAA
1 TGCCTTCGGGA-TTAACCCGGATTTAGTATCTCGCACAAA
* *
64257281 GGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACAAA
1 TGCCTTC-GGGATTAACCCGG-ATTTAGTATCTCGCACAAA
*
64257321 TGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACAAA
1 TGCCTTC-GGGATTAACCCGG-ATTTAGTATCTCGCACAAA
64257361 TGCCTTCGG
1 TGCCTTCGG
64257370 ATCTTAGTCC
Statistics
Matches: 151, Mismatches: 13, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
39 32 0.21
40 111 0.74
41 8 0.05
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (39 bp):
TGCCTTCGGGATTAACCCGGATTTAGTATCTCGCACAAA
Found at i:64257323 original size:80 final size:81
Alignment explanation
Indices: 64257162--64257369 Score: 255
Period size: 80 Copynumber: 2.6 Consensus size: 81
64257152 CTCGTTCAAT
* * * * *
64257162 TGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTC-GGGATATAACCCGGATT
1 TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAATGCCTTCGGGGATATAACCCGGATT
*
64257225 TAACAACTCGCACGAA
66 TAACAACTCGCACAAA
* *
64257241 TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCT-TAACCCGGAAT
1 TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAATGCCTTCGGGGATATAACCCGG-AT
** *
64257305 TT-GTATCTCGCACAAA
65 TTAACAACTCGCACAAA
*
64257321 TGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACAAATGCCTTCGG
1 TGCCTTCGGGACTTAACCCGG-ATTTAGTATCTCGCACAAATGCCTTCGG
64257370 ATCTTAGTCC
Statistics
Matches: 112, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
79 32 0.29
80 68 0.61
81 12 0.11
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (81 bp):
TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAATGCCTTCGGGGATATAACCCGGATT
TAACAACTCGCACAAA
Found at i:64257382 original size:80 final size:80
Alignment explanation
Indices: 64257162--64257422 Score: 239
Period size: 80 Copynumber: 3.3 Consensus size: 80
64257152 CTCGTTCAAT
* * * * * * *
64257162 TGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGG-GATATAACCCGG-AT
1 TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGAGCT-TAACCCGGAAT
** * *
64257224 TTAACAACTCGCACGAA
65 TT-GTATCTCGCACAAA
*
64257241 TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATT
1 TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGAGCTTAACCCGGAATT
64257306 TGTATCTCGCACAAA
66 TGTATCTCGCACAAA
* * * **
64257321 TGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATA
1 TGCCTTCGGGACTTAACCCGG-ATTTAGTATCTCGCACAAAGGCCTTCGGAGCTTAACCCGGA-A
* *
64257385 TATT-CA-CTTAGCACAAA
64 T-TTGTATC-TCGCACAAA
*
64257402 -GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGACTTAACCCGGA
64257423 CAGCATTCAA
Statistics
Matches: 154, Mismatches: 21, Indels: 14
0.81 0.11 0.07
Matches are distributed among these distances:
79 33 0.21
80 98 0.64
81 21 0.14
82 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (80 bp):
TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGAGCTTAACCCGGAATT
TGTATCTCGCACAAA
Found at i:64257431 original size:41 final size:41
Alignment explanation
Indices: 64257354--64257431 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
64257344 TTTGTATCTC
* * *
64257354 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
64257395 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
64257432 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:64262378 original size:92 final size:92
Alignment explanation
Indices: 64262221--64262589 Score: 720
Period size: 92 Copynumber: 4.0 Consensus size: 92
64262211 ATATTCACAG
64262221 ACCATAAGAGTTTGAAGTATTTGATAACTCAAAAAGAATTGAATCTGAGACAGTGGAGATGGTTA
1 ACCATAAGAGTTTGAAGTATTTGATAACTCAAAAAGAATTGAATCTGAGACAGTGGAGATGGTTA
64262286 GAACTAATTAAAGATTACAAGTAAATC
66 GAACTAATTAAAGATTACAAGTAAATC
64262313 ACCATAAGAGTTTGAAGTATTTGATAACTCAAAAAGAATTGAATCTGAGACAGTGGAGATGGTTA
1 ACCATAAGAGTTTGAAGTATTTGATAACTCAAAAAGAATTGAATCTGAGACAGTGGAGATGGTTA
64262378 GAACTAATTAAAGATTACAAGTAAATC
66 GAACTAATTAAAGATTACAAGTAAATC
64262405 ACCATAAGAGTTTGAAGTATTTGATAACTCAAAAAGAATTGAATCTGAGACAGTGGAGATGGTTA
1 ACCATAAGAGTTTGAAGTATTTGATAACTCAAAAAGAATTGAATCTGAGACAGTGGAGATGGTTA
64262470 GAACTAATTAAAGATTACAAGTAAATC
66 GAACTAATTAAAGATTACAAGTAAATC
*
64262497 ACCATAAGAGTTTGAAGTATTTGATAACTCAAAAAGAATTGAATCTAAGACAGTGGAGATGGTTA
1 ACCATAAGAGTTTGAAGTATTTGATAACTCAAAAAGAATTGAATCTGAGACAGTGGAGATGGTTA
*
64262562 GAACTAATTAAAGATTACGAGTAAATC
66 GAACTAATTAAAGATTACAAGTAAATC
64262589 A
1 A
64262590 TCGATTATCA
Statistics
Matches: 275, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
92 275 1.00
ACGTcount: A:0.44, C:0.10, G:0.20, T:0.27
Consensus pattern (92 bp):
ACCATAAGAGTTTGAAGTATTTGATAACTCAAAAAGAATTGAATCTGAGACAGTGGAGATGGTTA
GAACTAATTAAAGATTACAAGTAAATC
Found at i:64270927 original size:40 final size:40
Alignment explanation
Indices: 64270879--64271066 Score: 340
Period size: 40 Copynumber: 4.7 Consensus size: 40
64270869 GCAAACACAT
* * *
64270879 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
64270919 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
64270959 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
64270999 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
64271039 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
64271067 TCCAATGCTC
Statistics
Matches: 143, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 143 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:64272287 original size:27 final size:27
Alignment explanation
Indices: 64272257--64272440 Score: 163
Period size: 27 Copynumber: 6.6 Consensus size: 27
64272247 ATATCGAGTC
* *
64272257 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
64272284 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
64272311 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** *
64272339 CGCACACTTAGTGCCGCATGGTCAATTCGCACT
1 CGCACACTTAGTGCTACA---T-AA-TC-AACT
* **
64272372 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
64272399 CGCGCACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
64272426 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
64272441 GTACAATTTA
Statistics
Matches: 128, Mismatches: 21, Indels: 16
0.78 0.13 0.10
Matches are distributed among these distances:
27 81 0.63
28 22 0.17
29 1 0.01
30 1 0.01
31 1 0.01
32 1 0.01
33 21 0.16
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:64272401 original size:33 final size:33
Alignment explanation
Indices: 64272310--64272401 Score: 88
Period size: 33 Copynumber: 2.9 Consensus size: 33
64272300 CATAATCAAA
64272310 TCGCACACTTAGTGCTA-CATAGTCAA-----AC
1 TCGCACACTTAGTGC-AGCATAGTCAATTCGCAC
* *
64272338 TCGCACACTTAGTGCCGCATGGTCAATTCGCAC
1 TCGCACACTTAGTGCAGCATAGTCAATTCGCAC
* * *
64272371 TCGCACACTTAGTGCATCATATTCATTTCGC
1 TCGCACACTTAGTGCAGCATAGTCAATTCGC
64272402 GCACTTAGTG
Statistics
Matches: 51, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
28 23 0.45
33 28 0.55
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.28
Consensus pattern (33 bp):
TCGCACACTTAGTGCAGCATAGTCAATTCGCAC
Found at i:64273400 original size:226 final size:229
Alignment explanation
Indices: 64273003--64273456 Score: 761
Period size: 226 Copynumber: 2.0 Consensus size: 229
64272993 ACAAAATTTA
64273003 AAATAGTCATTAATCGACTATTCAAGTATTACTTTCAGAATAATATTATATATATTGATCCGACT
1 AAATAGTCATTAATCGACTATTCAAGTATTACTTTCAGAATAATATTATATATATTGATCCGACT
* *
64273068 TTCACACACATAGATTATAGCAAGCTTTATATTAATCAATAAATAATTCATCGGCAAACTTTCAT
66 TTCACACACATAGATTATAGCAAGCTTTATAATAATCAATAAATAACTCATCGGCAAACTTTCAT
*
64273133 TAATGTTTACAACAAAATCACATATTCACTACGAGCTGTTTTCCTGAGCAGTAGTTACTAAATTA
131 TAATGTTTACAACAAAATCACATATTCACTACGAGCTGTTTTCCTGAGCAGTAGTCACTAAATTA
*
64273198 CTTATAACTGGAGCTACTAAACTCCAAATCACTT
196 CTTATAACTGGAGCTACAAAACTCCAAATCACTT
**
64273232 AAATAGTCATTAATCGACTATTCAAGTATTACTTTCAGAAT-A-A-TATATATATTGATTTGACT
1 AAATAGTCATTAATCGACTATTCAAGTATTACTTTCAGAATAATATTATATATATTGATCCGACT
* * * * *
64273294 TTCACACACATAGATTATAGTAAGCTTTGTAATAGTCAATAAATAACTCATTGGCAAATTTTCAT
66 TTCACACACATAGATTATAGCAAGCTTTATAATAATCAATAAATAACTCATCGGCAAACTTTCAT
* *
64273359 TAATGTTTACAACAAAATCACATATTCACTACGAGCTGTTTTCCTGAGCAGTAGTCGCTAAATTG
131 TAATGTTTACAACAAAATCACATATTCACTACGAGCTGTTTTCCTGAGCAGTAGTCACTAAATTA
*
64273424 TTTATAACTGGAGCTACAAAACTCCAAATCACT
196 CTTATAACTGGAGCTACAAAACTCCAAATCACT
64273457 AGCCGTTAAT
Statistics
Matches: 211, Mismatches: 14, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
226 168 0.80
227 1 0.00
228 1 0.00
229 41 0.19
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.35
Consensus pattern (229 bp):
AAATAGTCATTAATCGACTATTCAAGTATTACTTTCAGAATAATATTATATATATTGATCCGACT
TTCACACACATAGATTATAGCAAGCTTTATAATAATCAATAAATAACTCATCGGCAAACTTTCAT
TAATGTTTACAACAAAATCACATATTCACTACGAGCTGTTTTCCTGAGCAGTAGTCACTAAATTA
CTTATAACTGGAGCTACAAAACTCCAAATCACTT
Found at i:64282181 original size:46 final size:46
Alignment explanation
Indices: 64282125--64282253 Score: 195
Period size: 46 Copynumber: 2.8 Consensus size: 46
64282115 TGGTTGAGCA
* * *
64282125 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
64282171 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
* * * *
64282217 CCCGAGCTCATTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
64282254 GCGGGTTACA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
Found at i:64284999 original size:50 final size:49
Alignment explanation
Indices: 64284890--64285065 Score: 172
Period size: 50 Copynumber: 3.5 Consensus size: 49
64284880 CTGGTACGCA
* * * * ** *
64284890 TAGTAGCTTGCACATAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
*
64284939 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AACCATCCGATACACG
* **** * * * *
64284989 TAGTAGCCTGCACTTAGTAATACACACGTGATCACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACCATCCGATACACG
64285040 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
64285066 TGCGACCTCA
Statistics
Matches: 106, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 29 0.27
50 42 0.40
51 34 0.32
52 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
Found at i:64288012 original size:101 final size:101
Alignment explanation
Indices: 64287855--64288113 Score: 297
Period size: 101 Copynumber: 2.6 Consensus size: 101
64287845 ATTCTTTTTG
** * ** * * * *
64287855 TGCCATAATCCAACTATGGTCTTACACATGCAT--TGCCATGGCCCAGCCATGATCTTACATTCG
1 TGCCATAGCCCAACTATGGTCTTACATATAAATACTGCCATGGTCCAACCATGGTCTTACATTCA
* * * ** *
64287918 TAGTGTCATAACCCAGTTATGGTCTTATCATCAGAA
66 AAGTGCCATAAACCAGTTATGGAATTATCATCAAAA
* **
64287954 TGCCATAGCCCAACTATGGTCTTACTTATAAATACTGCCATGGTCCAACCATGGTCTTATGTTCA
1 TGCCATAGCCCAACTATGGTCTTACATATAAATACTGCCATGGTCCAACCATGGTCTTACATTCA
* * *
64288019 AAGTGCCATAAACTAGTTATGGAATTTTCATTAAAA
66 AAGTGCCATAAACCAGTTATGGAATTATCATCAAAA
* *
64288055 TGCCATAGCCCAGCTATGGTCTTACATATAAATATTGCCATGGTCCAACCATGGTCTTA
1 TGCCATAGCCCAACTATGGTCTTACATATAAATACTGCCATGGTCCAACCATGGTCTTA
64288114 TCCATCAATT
Statistics
Matches: 134, Mismatches: 24, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
99 27 0.20
101 107 0.80
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (101 bp):
TGCCATAGCCCAACTATGGTCTTACATATAAATACTGCCATGGTCCAACCATGGTCTTACATTCA
AAGTGCCATAAACCAGTTATGGAATTATCATCAAAA
Found at i:64290044 original size:22 final size:18
Alignment explanation
Indices: 64289998--64290050 Score: 52
Period size: 22 Copynumber: 2.7 Consensus size: 18
64289988 TTATATACTA
64289998 AATAAAATAATAAAATAT
1 AATAAAATAATAAAATAT
64290016 AATTAAAATCAAATCAAAATATT
1 AA-TAAAAT--AAT-AAAATA-T
*
64290039 AATAAACTAATA
1 AATAAAATAATA
64290051 TTTATTTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 9
0.74 0.03 0.23
Matches are distributed among these distances:
18 2 0.07
19 7 0.24
20 3 0.10
21 3 0.10
22 11 0.38
23 3 0.10
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.28
Consensus pattern (18 bp):
AATAAAATAATAAAATAT
Found at i:64290291 original size:39 final size:39
Alignment explanation
Indices: 64290240--64290318 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
64290230 AATTAATCCA
64290240 TTTTCCTTAGTTTCTAGATAATTCCAACCTTAAAATATT
1 TTTTCCTTAGTTTCTAGATAATTCCAACCTTAAAATATT
64290279 TTTTCCTTAGTTTCTAGATAATTCCAACCTTAAAATATT
1 TTTTCCTTAGTTTCTAGATAATTCCAACCTTAAAATATT
64290318 T
1 T
64290319 GCACTATTGA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.30, C:0.18, G:0.05, T:0.47
Consensus pattern (39 bp):
TTTTCCTTAGTTTCTAGATAATTCCAACCTTAAAATATT
Found at i:64293698 original size:15 final size:15
Alignment explanation
Indices: 64293670--64293712 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
64293660 TTAAATTTTG
64293670 TTTTCATT-TTATTA
1 TTTTCATTATTATTA
64293684 TCTTT-ATTATTATTA
1 T-TTTCATTATTATTA
64293699 TTTTCATTATTATT
1 TTTTCATTATTATT
64293713 GAAGTTACTT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 7 0.27
15 19 0.73
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTTCATTATTATTA
Found at i:64294710 original size:21 final size:20
Alignment explanation
Indices: 64294686--64294725 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
64294676 CATGTATTTT
64294686 AATGATTGATGATAGATTATG
1 AATGATTGATGATAG-TTATG
*
64294707 AATGTTTGATGATAGTTAT
1 AATGATTGATGATAGTTAT
64294726 ACAAGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (20 bp):
AATGATTGATGATAGTTATG
Found at i:64294733 original size:20 final size:21
Alignment explanation
Indices: 64294691--64294733 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
64294681 ATTTTAATGA
*
64294691 TTGATGATAGATTATGAATGT
1 TTGATGATAGATTATGAAAGT
64294712 TTGATGATAG-TTAT-ACAAGT
1 TTGATGATAGATTATGA-AAGT
64294732 TT
1 TT
64294734 TGTTAAGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 9 0.45
21 10 0.50
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.44
Consensus pattern (21 bp):
TTGATGATAGATTATGAAAGT
Found at i:64297160 original size:35 final size:35
Alignment explanation
Indices: 64297114--64297276 Score: 326
Period size: 35 Copynumber: 4.7 Consensus size: 35
64297104 CCCAAGTCCG
64297114 AATCCATATACAAATAAAGTCATTAAAAGCTTAGT
1 AATCCATATACAAATAAAGTCATTAAAAGCTTAGT
64297149 AATCCATATACAAATAAAGTCATTAAAAGCTTAGT
1 AATCCATATACAAATAAAGTCATTAAAAGCTTAGT
64297184 AATCCATATACAAATAAAGTCATTAAAAGCTTAGT
1 AATCCATATACAAATAAAGTCATTAAAAGCTTAGT
64297219 AATCCATATACAAATAAAGTCATTAAAAGCTTAGT
1 AATCCATATACAAATAAAGTCATTAAAAGCTTAGT
64297254 AATCCATATACAAATAAAGTCAT
1 AATCCATATACAAATAAAGTCAT
64297277 CATATGAATA
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 128 1.00
ACGTcount: A:0.49, C:0.15, G:0.08, T:0.28
Consensus pattern (35 bp):
AATCCATATACAAATAAAGTCATTAAAAGCTTAGT
Found at i:64297599 original size:43 final size:43
Alignment explanation
Indices: 64297529--64297697 Score: 173
Period size: 43 Copynumber: 4.0 Consensus size: 43
64297519 ATAACTTGTA
* * * * *
64297529 CAATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATAT
1 CAATGCCAATGTCCTAGACATGGTCTTACACGTAATCACATAT
* * * * *
64297571 CAATGCCACTGTCCTAGACAAGGTCTTACACGAAATCAAATAA
1 CAATGCCAATGTCCTAGACATGGTCTTACACGTAATCACATAT
* * *
64297614 CGATGCCAATTTCCCAGACATGGTCTTACACGTAATCACA-AT
1 CAATGCCAATGTCCTAGACATGGTCTTACACGTAATCACATAT
*
64297656 ACAATGCCAATGTCCTAGACATTGTCTTACATC-TAATCACAT
1 -CAATGCCAATGTCCTAGACATGGTCTTACA-CGTAATCACAT
64297698 CTCGATAACC
Statistics
Matches: 101, Mismatches: 22, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
42 8 0.08
43 92 0.91
44 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.28
Consensus pattern (43 bp):
CAATGCCAATGTCCTAGACATGGTCTTACACGTAATCACATAT
Found at i:64308892 original size:25 final size:25
Alignment explanation
Indices: 64308864--64308933 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
64308854 CTCTTTTAAT
*
64308864 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
64308889 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
64308914 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
64308934 GCACTTCCTC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:64308992 original size:10 final size:10
Alignment explanation
Indices: 64308979--64309017 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
64308969 ATATATGAAT
64308979 ATATCATGGC
1 ATATCATGGC
64308989 ATATCATGTGC
1 ATATCATG-GC
*
64309000 ATATGATGGC
1 ATATCATGGC
64309010 ATATCATG
1 ATATCATG
64309018 TATAAAACAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 17 0.65
11 9 0.35
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (10 bp):
ATATCATGGC
Found at i:64309008 original size:21 final size:21
Alignment explanation
Indices: 64308979--64309018 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
64308969 ATATATGAAT
64308979 ATATCATGGCATATCATGTGC
1 ATATCATGGCATATCATGTGC
*
64309000 ATATGATGGCATATCATGT
1 ATATCATGGCATATCATGT
64309019 ATAAAACAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (21 bp):
ATATCATGGCATATCATGTGC
Found at i:64309085 original size:25 final size:25
Alignment explanation
Indices: 64309057--64309107 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
64309047 ACAACATATC
* *
64309057 CCTAGGGGTATAATGGTCATTTTCA
1 CCTAGGGGCAAAATGGTCATTTTCA
64309082 CCTAGGGGCAAAATGGTCATTTTCA
1 CCTAGGGGCAAAATGGTCATTTTCA
64309107 C
1 C
64309108 ATTATAAGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTCA
Found at i:64315752 original size:35 final size:35
Alignment explanation
Indices: 64315702--64315771 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
64315692 AATGTAACAC
*
64315702 CCCAAACCTGGCCCAGACATTATGGCCGAATCCGA
1 CCCAAACCTGACCCAGACATTATGGCCGAATCCGA
*
64315737 CCCAAACCTGACCCAGACGTTATGGCCGAATCCGA
1 CCCAAACCTGACCCAGACATTATGGCCGAATCCGA
64315772 TGTGTCATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.29, C:0.37, G:0.20, T:0.14
Consensus pattern (35 bp):
CCCAAACCTGACCCAGACATTATGGCCGAATCCGA
Found at i:64316732 original size:25 final size:25
Alignment explanation
Indices: 64316704--64316773 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
64316694 CTCTTTTAAT
*
64316704 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
64316729 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
64316754 AACTAGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
64316774 GCACTTCCTC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:64316832 original size:10 final size:10
Alignment explanation
Indices: 64316819--64316857 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
64316809 ATATATGAAT
64316819 ATATCATGGC
1 ATATCATGGC
64316829 ATATCATGTGC
1 ATATCATG-GC
64316840 ATATCATGGC
1 ATATCATGGC
64316850 ATATCATG
1 ATATCATG
64316858 TATAAAACAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (10 bp):
ATATCATGGC
Found at i:64316844 original size:21 final size:21
Alignment explanation
Indices: 64316819--64316858 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
64316809 ATATATGAAT
64316819 ATATCATGGCATATCATGTGC
1 ATATCATGGCATATCATGTGC
64316840 ATATCATGGCATATCATGT
1 ATATCATGGCATATCATGT
64316859 ATAAAACAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (21 bp):
ATATCATGGCATATCATGTGC
Found at i:64316925 original size:25 final size:25
Alignment explanation
Indices: 64316897--64316944 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
64316887 ATAACATATC
* *
64316897 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
64316922 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
64316945 CACATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:64325382 original size:40 final size:39
Alignment explanation
Indices: 64325316--64325397 Score: 103
Period size: 40 Copynumber: 2.1 Consensus size: 39
64325306 TATATAAATA
* *
64325316 TAGCCGAAGCTATCTCAAATTGCACACTAAGTGTCACTTT
1 TAGCCGAAGCTATCTCAAACTGCACACTAAGTGCCA-TTT
* *
64325356 TAGCCGAAGCTATTTCGAACCT-CACACTAAGTGCCATTT
1 TAGCCGAAGCTATCTC-AAACTGCACACTAAGTGCCATTT
64325395 TAG
1 TAG
64325398 TCGATAAGTC
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
39 6 0.16
40 28 0.76
41 3 0.08
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (39 bp):
TAGCCGAAGCTATCTCAAACTGCACACTAAGTGCCATTT
Found at i:64337601 original size:47 final size:46
Alignment explanation
Indices: 64337528--64337846 Score: 249
Period size: 47 Copynumber: 6.8 Consensus size: 46
64337518 GGTATAATGC
* * *
64337528 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTTACGCTAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACG-TAAGT
* *
64337575 CGACGCCATGTCCCAAACATGGTCTTACACTGACTCTCACGTTAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACG-TAAGT
* * *
64337622 TGATGCCATGTCCCAGGCATGGTCTTACACTGACTCTCACGTATCCATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACGTA---A-GT
* * * *
64337672 CGATGCCATGTCCCAGACATGGTCTTATACTGACACATCATGTAA-C
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTC-TCACGTAAGT
* * * * *
64337718 CGATG-CATATCCCAGACAT-GTCTTACACTGGCTTACATCTCG-AGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGAC-T-C-TCACGTAAGT
* * * *
64337764 CAATG-CATGTCCAAGACAT-GTCTTACACT-AGCTCTCGTC-TCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCTC-ACGT-AA-GT
* *
64337810 CAATGCCATGTCCCAGACATGGTCTTACACTGGCTCT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCT
64337847 TACAATGTGG
Statistics
Matches: 226, Mismatches: 30, Indels: 31
0.79 0.10 0.11
Matches are distributed among these distances:
43 2 0.01
44 14 0.06
45 16 0.07
46 48 0.21
47 91 0.40
48 15 0.07
49 1 0.00
50 33 0.15
51 6 0.03
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (46 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACGTAAGT
Found at i:64337756 original size:46 final size:45
Alignment explanation
Indices: 64337671--64337886 Score: 156
Period size: 46 Copynumber: 4.7 Consensus size: 45
64337661 CGTATCCATG
* *
64337671 CCGATGCCATGTCCCAGACATGGTCTTATACTGAC--ACATCATGTAA
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATC-TGTAA
* *
64337717 CCGATGCATATCCCAGACATGTCTTACACTGGCTTACATCTCG-AGG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCT-GTA-A
* * * * *
64337763 CCAATGCATGTCCAAGACATGTCTTACACTAGCTCT-CGTCT-CAA
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCT-TACATCTGTAA
* * **
64337807 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTACA-ATGTGG
1 --CCGATG-CATGTCCCAGACAT-GTCTTACACTGG--CTTACATCTGTAA
*
64337857 CCGATGCATGTGCCAGACATGTCTTACACT
1 CCGATGCATGTCCCAGACATGTCTTACACT
64337887 AGCACACAAA
Statistics
Matches: 137, Mismatches: 19, Indels: 28
0.74 0.10 0.15
Matches are distributed among these distances:
44 11 0.08
45 16 0.12
46 62 0.45
47 27 0.20
48 16 0.12
49 2 0.01
50 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (45 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTGTAA
Found at i:64337867 original size:47 final size:47
Alignment explanation
Indices: 64337526--64337886 Score: 237
Period size: 47 Copynumber: 7.7 Consensus size: 47
64337516 AGGGTATAAT
* ** *
64337526 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTTACGCTAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTACAATTA
* * * * * *
64337573 GTCGACGCCATGTCCCAAACATGGTCTTACACTGACTCTCAC-GTTAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTACAATT-A
** * * * * *
64337620 GTTGATGCCATGTCCCAGGCATGGTCTTACACTGACTCTCACGTATCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTAC-AAT-TA
* * * *
64337669 TGCCGATGCCATGTCCCAGACATGGTCTTATACTGACACAT-C-ATGTA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTACAAT-TA
* *
64337716 ACCGATG-CATATCCCAGACAT-GTCTTACACTGG--CTTAC-ATCTCGA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTACAAT-T--A
* * * *
64337761 GGCCAATG-CATGTCCAAGACAT-GTCTTACACTAGCTCTCGTCTCAA-T-
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT--T-ACAATTA
* *
64337808 GCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTACAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTACAAT-TA
*
64337856 GCCGATG-CATGTGCCAGACAT-GTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
64337887 AGCACACAAA
Statistics
Matches: 254, Mismatches: 40, Indels: 41
0.76 0.12 0.12
Matches are distributed among these distances:
42 2 0.01
43 4 0.02
44 10 0.04
45 17 0.07
46 53 0.21
47 105 0.41
48 23 0.09
49 3 0.01
50 35 0.14
51 1 0.00
52 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTACAATTA
Found at i:64337874 original size:140 final size:140
Alignment explanation
Indices: 64337628--64337886 Score: 344
Period size: 140 Copynumber: 1.8 Consensus size: 140
64337618 AAGTTGATGC
* * * *
64337628 CATGTCCCAGGCATGGTCTTACACTGACTCTCACGTATCCATGCCGATGCCATGTCCCAGACATG
1 CATGTCCAAGACATGGTCTTACACTGACTCT-ACGTATCAATGCCAATGCCATGTCCCAGACATG
*
64337693 GTCTTATACTGACACATCATGTAACCGATGCATATCCCAGACATGTCTTACACTGGCTTACATCT
65 GTCTTACACTGACACATCATGTAACCGATGCATATCCCAGACATGTCTTACACTGGCTTACATCT
64337758 CGAGGCCAATG
130 CGAGGCCAATG
*
64337769 CATGTCCAAGACAT-GTCTTACACT-AGCTCT-CGTCTCAATGCCAATGCCATGTCCCAGACATG
1 CATGTCCAAGACATGGTCTTACACTGA-CTCTACGTATCAATGCCAATGCCATGTCCCAGACATG
* * * ** * *
64337831 GTCTTACACTGGCTCTTACAATGTGGCCGATGCATGTGCCAGACATGTCTTACACT
65 GTCTTACACTGACACAT-C-ATGTAACCGATGCATATCCCAGACATGTCTTACACT
64337887 AGCACACAAA
Statistics
Matches: 102, Mismatches: 13, Indels: 7
0.84 0.11 0.06
Matches are distributed among these distances:
138 42 0.41
139 2 0.02
140 46 0.45
141 12 0.12
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (140 bp):
CATGTCCAAGACATGGTCTTACACTGACTCTACGTATCAATGCCAATGCCATGTCCCAGACATGG
TCTTACACTGACACATCATGTAACCGATGCATATCCCAGACATGTCTTACACTGGCTTACATCTC
GAGGCCAATG
Found at i:64338613 original size:13 final size:13
Alignment explanation
Indices: 64338595--64338619 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64338585 CTAAAAGTGC
64338595 AAAAATCATCAAG
1 AAAAATCATCAAG
64338608 AAAAATCATCAA
1 AAAAATCATCAA
64338620 AATCACTTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAAATCATCAAG
Found at i:64343884 original size:24 final size:24
Alignment explanation
Indices: 64343852--64343900 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
64343842 TCATGCTAGG
64343852 TTAGTCCTAGAACTGACTAAACCA
1 TTAGTCCTAGAACTGACTAAACCA
64343876 TTAGTCCTAGAACTGACTAAACCA
1 TTAGTCCTAGAACTGACTAAACCA
64343900 T
1 T
64343901 GCTTTGATAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.27
Consensus pattern (24 bp):
TTAGTCCTAGAACTGACTAAACCA
Found at i:64344268 original size:13 final size:13
Alignment explanation
Indices: 64344250--64344286 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
64344240 CCTCTAGGGA
64344250 CACGCCCGTGTCC
1 CACGCCCGTGTCC
64344263 CACGCCCGTGTCC
1 CACGCCCGTGTCC
*
64344276 CATGCCCGTGT
1 CACGCCCGTGT
64344287 GAATTAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.08, C:0.49, G:0.24, T:0.19
Consensus pattern (13 bp):
CACGCCCGTGTCC
Found at i:64344375 original size:28 final size:28
Alignment explanation
Indices: 64344321--64344376 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
64344311 ACAGGGGTTT
64344321 TCACACGGCCTGATACACGCCCGTGTCTC
1 TCACACGGCCTGA-ACACGCCCGTGTCTC
* *
64344350 TCACACGGCCATG-ACACGTCTGTGTCT
1 TCACACGGCC-TGAACACGCCCGTGTCT
64344377 AAAAACCTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 12 0.50
29 10 0.42
30 2 0.08
ACGTcount: A:0.18, C:0.38, G:0.21, T:0.23
Consensus pattern (28 bp):
TCACACGGCCTGAACACGCCCGTGTCTC
Found at i:64345424 original size:47 final size:49
Alignment explanation
Indices: 64345355--64345483 Score: 138
Period size: 47 Copynumber: 2.7 Consensus size: 49
64345345 TATAATGCCT
* *
64345355 ATGCCATATCCC-AGACATGGTCTTACACTGACTCTCACAT-TAAGT-TG
1 ATGCCATGTCCCAAG-CATGGTCTTACACTGACTCTCACATATAAGTACG
** **
64345402 ATGCCATGTCCCAAGCATGGTCTTACTTTGACTCTCACATATCCGTACCG
1 ATGCCATGTCCCAAGCATGGTCTTACACTGACTCTCACATATAAGTA-CG
* * *
64345452 ATGCCATGTCCCAAACAAGGTCTTATACTGAC
1 ATGCCATGTCCCAAGCATGGTCTTACACTGAC
64345484 ACATCATGCA
Statistics
Matches: 67, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
47 34 0.51
48 5 0.07
50 28 0.42
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (49 bp):
ATGCCATGTCCCAAGCATGGTCTTACACTGACTCTCACATATAAGTACG
Found at i:64345534 original size:46 final size:47
Alignment explanation
Indices: 64345449--64345618 Score: 156
Period size: 46 Copynumber: 3.7 Consensus size: 47
64345439 CATATCCGTA
* * *
64345449 CCGATGCCATGTCCCAAACAAGGTCTTATACTGAC--ACATCATGC-A-G
1 CCGATGCCATGTCCCAAAC-ATGTCTTACACTGGCTTACATC-T-CAAGG
* *
64345495 CCGATG-CATGTCCCACACATGTCTTACACTGGCTTACATCTCGAGG
1 CCGATGCCATGTCCCAAACATGTCTTACACTGGCTTACATCTCAAGG
* * *
64345541 CCGATG-CATGACCCAAACATGTCTTACACTAGCTCT-CATCTCAATG
1 CCGATGCCATGTCCCAAACATGTCTTACACTGGCT-TACATCTCAAGG
* *
64345587 TCGATGCCATGTCCCAGACATGGTCTTACACT
1 CCGATGCCATGTCCCAAACAT-GTCTTACACT
64345619 CACCCTCGTA
Statistics
Matches: 105, Mismatches: 12, Indels: 12
0.81 0.09 0.09
Matches are distributed among these distances:
44 13 0.12
45 13 0.12
46 56 0.53
47 13 0.12
48 10 0.10
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.25
Consensus pattern (47 bp):
CCGATGCCATGTCCCAAACATGTCTTACACTGGCTTACATCTCAAGG
Found at i:64346391 original size:13 final size:13
Alignment explanation
Indices: 64346373--64346397 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64346363 CTAAAAGTGC
64346373 AAAAATCATCAAG
1 AAAAATCATCAAG
64346386 AAAAATCATCAA
1 AAAAATCATCAA
64346398 AATCACTTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAAATCATCAAG
Found at i:64357653 original size:40 final size:40
Alignment explanation
Indices: 64357473--64357693 Score: 232
Period size: 40 Copynumber: 5.5 Consensus size: 40
64357463 CTCGTTCAAG
* * * * *
64357473 TGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AA
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
* *
64357512 TGCCTTCGGGACATAACCCGGATTTAACAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
64357552 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
* * *
64357592 TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
* ** * * * *
64357632 GGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-AA
1 TGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACGAA
* *
64357672 AGCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGACTTAACCCGGA
64357694 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 35 0.22
40 115 0.73
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
Found at i:64357702 original size:41 final size:41
Alignment explanation
Indices: 64357625--64357702 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
64357615 TTAGTATCTC
* * *
64357625 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
64357666 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
64357703 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:64359439 original size:24 final size:25
Alignment explanation
Indices: 64359396--64359445 Score: 61
Period size: 24 Copynumber: 2.0 Consensus size: 25
64359386 GAAATGCTCA
64359396 ATATATTTGATTATTAATTCA-ATG
1 ATATATTTGATTATTAATTCATATG
64359420 ATATATTT-A-TATTTATATTCATATG
1 ATATATTTGATTA-TTA-ATTCATATG
64359445 A
1 A
64359446 ACTATGGGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
22 2 0.09
23 4 0.17
24 13 0.57
25 4 0.17
ACGTcount: A:0.38, C:0.04, G:0.06, T:0.52
Consensus pattern (25 bp):
ATATATTTGATTATTAATTCATATG
Found at i:64363447 original size:62 final size:62
Alignment explanation
Indices: 64363350--64363474 Score: 250
Period size: 62 Copynumber: 2.0 Consensus size: 62
64363340 TGTCAACAAG
64363350 TAAAACCCAAACATCAGGTACCTTCTGTATTACTTCAGCCGATCATGATACCTGAGTGGAAA
1 TAAAACCCAAACATCAGGTACCTTCTGTATTACTTCAGCCGATCATGATACCTGAGTGGAAA
64363412 TAAAACCCAAACATCAGGTACCTTCTGTATTACTTCAGCCGATCATGATACCTGAGTGGAAA
1 TAAAACCCAAACATCAGGTACCTTCTGTATTACTTCAGCCGATCATGATACCTGAGTGGAAA
64363474 T
1 T
64363475 GGGACAGAGT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (62 bp):
TAAAACCCAAACATCAGGTACCTTCTGTATTACTTCAGCCGATCATGATACCTGAGTGGAAA
Found at i:64375518 original size:40 final size:40
Alignment explanation
Indices: 64375459--64375675 Score: 303
Period size: 40 Copynumber: 5.5 Consensus size: 40
64375449 AAACCAAGTA
* * * *
64375459 CCTTCGGGATTTA-ACCGGATATAGTTACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* **
64375498 CCTTCGAGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
64375538 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
64375578 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
64375618 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
64375658 CCTTCAGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
64375676 ATTATCATCC
Statistics
Matches: 159, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 12 0.08
40 147 0.92
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:64376972 original size:55 final size:56
Alignment explanation
Indices: 64376883--64376998 Score: 182
Period size: 55 Copynumber: 2.1 Consensus size: 56
64376873 CTCCAAGCTC
*
64376883 TTTC-CCCTTCTTTTTTCTCTCTTCTATTCGGCCAAGTTGAACAACATGAGAACTT
1 TTTCTCCCTTCTTTTTTCTCTCTTCTATTCGGCCAAGTTCAACAACATGAGAACTT
* * *
64376938 TTTCTCCCTTC-TTTTTCTTTCTTTTATTTGGCCAAGTTCAACAACATGAGAACTT
1 TTTCTCCCTTCTTTTTTCTCTCTTCTATTCGGCCAAGTTCAACAACATGAGAACTT
64376993 TTTCTC
1 TTTCTC
64376999 TCTTTTATTT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
55 50 0.89
56 6 0.11
ACGTcount: A:0.19, C:0.26, G:0.09, T:0.46
Consensus pattern (56 bp):
TTTCTCCCTTCTTTTTTCTCTCTTCTATTCGGCCAAGTTCAACAACATGAGAACTT
Found at i:64383648 original size:40 final size:40
Alignment explanation
Indices: 64383592--64383795 Score: 356
Period size: 40 Copynumber: 5.1 Consensus size: 40
64383582 TGGGATTTAA
* *
64383592 CCGGATATAGTTACTCGCTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
64383632 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
64383672 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
64383712 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
64383752 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
64383792 CCGG
1 CCGG
64383796 TTATCATCCG
Statistics
Matches: 159, Mismatches: 4, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
39 1 0.01
40 158 0.99
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:64384187 original size:42 final size:42
Alignment explanation
Indices: 64384140--64384222 Score: 157
Period size: 42 Copynumber: 2.0 Consensus size: 42
64384130 ACGGCTATTC
*
64384140 GATCACTTTTTCCTTCCCTTTATTGGATTTAGTTCCCCTTTT
1 GATCACTTTTTCCTTCCCTTTATCGGATTTAGTTCCCCTTTT
64384182 GATCACTTTTTCCTTCCCTTTATCGGATTTAGTTCCCCTTT
1 GATCACTTTTTCCTTCCCTTTATCGGATTTAGTTCCCCTTT
64384223 GCTCTTGAGC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.12, C:0.28, G:0.10, T:0.51
Consensus pattern (42 bp):
GATCACTTTTTCCTTCCCTTTATCGGATTTAGTTCCCCTTTT
Found at i:64384217 original size:23 final size:23
Alignment explanation
Indices: 64384149--64384217 Score: 60
Period size: 21 Copynumber: 3.2 Consensus size: 23
64384139 CGATCACTTT
*
64384149 TTCCTTCCCTTTATTGGATTTAG
1 TTCCTTCCCTTTATCGGATTTAG
*
64384172 TTCC--CCTTTTGATC--ACTTT--
1 TTCCTTCCCTTT-ATCGGA-TTTAG
64384191 TTCCTTCCCTTTATCGGATTTAG
1 TTCCTTCCCTTTATCGGATTTAG
64384214 TTCC
1 TTCC
64384218 CCTTTGCTCT
Statistics
Matches: 35, Mismatches: 3, Indels: 16
0.65 0.06 0.30
Matches are distributed among these distances:
19 4 0.11
20 4 0.11
21 16 0.46
22 3 0.09
23 8 0.23
ACGTcount: A:0.12, C:0.28, G:0.10, T:0.51
Consensus pattern (23 bp):
TTCCTTCCCTTTATCGGATTTAG
Found at i:64388478 original size:21 final size:21
Alignment explanation
Indices: 64388452--64388513 Score: 88
Period size: 21 Copynumber: 3.0 Consensus size: 21
64388442 CCCAACCCAT
* * *
64388452 GCATATAATGTGTATATTATA
1 GCATATCATGTGCATATCATA
64388473 GCATATCATGTGCATATCATA
1 GCATATCATGTGCATATCATA
*
64388494 ACATATCATGTGCATATCAT
1 GCATATCATGTGCATATCAT
64388514 GTCCTATCAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (21 bp):
GCATATCATGTGCATATCATA
Found at i:64388521 original size:10 final size:11
Alignment explanation
Indices: 64388451--64388525 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
64388441 ACCCAACCCA
*
64388451 TGCATATAATG
1 TGCATATCATG
* *
64388462 TGTATATTAT-
1 TGCATATCATG
*
64388472 AGCATATCATG
1 TGCATATCATG
64388483 TGCATATCAT-
1 TGCATATCATG
**
64388493 AACATATCATG
1 TGCATATCATG
64388504 TGCATATCATG
1 TGCATATCATG
*
64388515 T-CCTATCATG
1 TGCATATCATG
64388525 T
1 T
64388526 ATAACAATAT
Statistics
Matches: 51, Mismatches: 11, Indels: 5
0.76 0.16 0.07
Matches are distributed among these distances:
10 24 0.47
11 27 0.53
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (11 bp):
TGCATATCATG
Found at i:64388683 original size:54 final size:54
Alignment explanation
Indices: 64388625--64388731 Score: 126
Period size: 54 Copynumber: 2.0 Consensus size: 54
64388615 TTTAACACCC
*
64388625 TAGGGGCAAAATGGTAATTT-TACCCCACAAGGTTATCTCGGTAACTCTACCCTA
1 TAGGGGCAAAATGGT-ATTTCTACCCCACAAGGGTATCTCGGTAACTCTACCCTA
* *** * * *
64388679 TAGGGGTATTTTGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCT
1 TAGGGGCAAAATGGTATTTCTACCCCACAAGGGTATCTCGGTAACTCTACCCT
64388732 GCAGGGGTAT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
53 4 0.09
54 40 0.91
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (54 bp):
TAGGGGCAAAATGGTATTTCTACCCCACAAGGGTATCTCGGTAACTCTACCCTA
Found at i:64388793 original size:21 final size:21
Alignment explanation
Indices: 64388767--64388807 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
64388757 GTACAGGGGT
*
64388767 ATTTTAGTAACTCTACCCTAC
1 ATTTTAATAACTCTACCCTAC
*
64388788 ATTTTAATAATTCTACCCTA
1 ATTTTAATAACTCTACCCTA
64388808 TAGGGGTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.24, G:0.02, T:0.41
Consensus pattern (21 bp):
ATTTTAATAACTCTACCCTAC
Found at i:64388826 original size:27 final size:27
Alignment explanation
Indices: 64388636--64388853 Score: 162
Period size: 27 Copynumber: 8.3 Consensus size: 27
64388626 AGGGGCAAAA
* * * * *
64388636 TGGTAATTTTACCCCACAAGGTTATCT
1 TGGTAATTCTACCCTACAGGGGTATTT
* * *
64388663 CGGTAACTCTACCCTATAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
64388690 TGGTATTTCTACCCTACAAGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
64388717 CGGTAATTCTACCCTGCAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
** **
64388744 CAGTAATTCTACTGTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
64388771 TAGTAACTCTACCCTAC------ATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
** *
64388792 TAATAATTCTACCCTATAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* **
64388819 TGGTAATTTTA-CAAACCAGGGGTATTT
1 TGGTAATTCTACCCTA-CAGGGGTATTT
64388846 TGGTAATT
1 TGGTAATT
64388854 TTGTAAACTA
Statistics
Matches: 150, Mismatches: 34, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
21 18 0.12
26 2 0.01
27 130 0.87
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.38
Consensus pattern (27 bp):
TGGTAATTCTACCCTACAGGGGTATTT
Found at i:64389409 original size:27 final size:27
Alignment explanation
Indices: 64388809--64389395 Score: 615
Period size: 27 Copynumber: 21.7 Consensus size: 27
64388799 TCTACCCTAT
64388809 AGGGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
** *
64388836 AGGGGTATTTTGGTAATTTTGTAAACT
1 AGGGGTATTTTGGTAATTTTACAAACC
* **
64388863 AAGGGTATTTTGGTAATTTTAC-AAGG
1 AGGGGTATTTTGGTAATTTTACAAACC
* * * **
64388889 TGAGGGTATTTTAGTAATTTCACAAATT
1 AG-GGGTATTTTGGTAATTTTACAAACC
*
64388917 AGGGGTATTTTGGTAATTTTACAAACA
1 AGGGGTATTTTGGTAATTTTACAAACC
*
64388944 AGGGGTATTTTGGTAATTTCACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
*
64388971 AGAGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
* * *
64388998 AGGTGTGTTTTAGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
* * **
64389025 AGGGGTATTTTAGTAATTTTA-TAAGT
1 AGGGGTATTTTGGTAATTTTACAAACC
* * * * **
64389051 GGAGGGTATTTTAGTAATTTCAAAAATT
1 AG-GGGTATTTTGGTAATTTTACAAACC
* * *
64389079 AGGGGTATTTTGATAATTTCACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACC
**
64389106 AGGGGTATTTTGGTAATTTTACAAGTC
1 AGGGGTATTTTGGTAATTTTACAAACC
* * **
64389133 -GAGGGTATTTTAGTAATTTCACAAATT
1 AG-GGGTATTTTGGTAATTTTACAAACC
*
64389160 AGGGGTATTTTGGTAATTTTACAAACA
1 AGGGGTATTTTGGTAATTTTACAAACC
*
64389187 AGGGGTATTTTGGTAATTTCACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
*
64389214 AGAGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
* * *
64389241 AGGTGTGTTTTAGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
* * **
64389268 AGGGGTATTTTAGTAATTTTA-TAAGT
1 AGGGGTATTTTGGTAATTTTACAAACC
* * * * **
64389294 GGAGGGTATTTTAGTAATTTCAAAAATT
1 AG-GGGTATTTTGGTAATTTTACAAACC
* *
64389322 AGGGGTATTTTGGTAATTTCACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACC
64389349 AGGGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
*
64389376 AGGGGTATTTTAGTAATTTT
1 AGGGGTATTTTGGTAATTTT
64389396 GCTAATCGAG
Statistics
Matches: 474, Mismatches: 78, Indels: 16
0.83 0.14 0.03
Matches are distributed among these distances:
26 9 0.02
27 453 0.96
28 12 0.03
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.40
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACC
Found at i:64389420 original size:81 final size:82
Alignment explanation
Indices: 64388811--64389394 Score: 696
Period size: 81 Copynumber: 7.2 Consensus size: 82
64388801 TACCCTATAG
* * ** ** *
64388811 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTTGG
1 GGGTATTTTAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
***
64388876 TAATTTTAC-AAGGTGA
66 TAATTTTACAAACCAGA
*
64388892 GGGTATTTTAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACAAGGGGTATTTTGG
1 GGGTATTTTAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
*
64388957 TAATTTCACAAACCAGA
66 TAATTTTACAAACCAGA
* * ** * * * * *
64388974 -GGTATTTTGGTAATTTTACAAACCAGGTGTGTTTTAGTAATTTTACAAACCAGGGGTATTTTAG
1 GGGTATTTTAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
* ***
64389038 TAATTTTA-TAAGTGGA
66 TAATTTTACAAACCAGA
* * *
64389054 GGGTATTTTAGTAATTTCAAAAATTAGGGGTATTTTGATAATTTCACAAACTAGGGGTATTTTGG
1 GGGTATTTTAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
**
64389119 TAATTTTACAAGTC-GA
66 TAATTTTACAAACCAGA
*
64389135 GGGTATTTTAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACAAGGGGTATTTTGG
1 GGGTATTTTAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
*
64389200 TAATTTCACAAACCAGA
66 TAATTTTACAAACCAGA
* * ** * * * * *
64389217 -GGTATTTTGGTAATTTTACAAACCAGGTGTGTTTTAGTAATTTTACAAACCAGGGGTATTTTAG
1 GGGTATTTTAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
* ***
64389281 TAATTTTA-TAAGTGGA
66 TAATTTTACAAACCAGA
* *
64389297 GGGTATTTTAGTAATTTCAAAAATTAGGGGTATTTTGGTAATTTCACAAACTAGGGGTATTTTGG
1 GGGTATTTTAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
64389362 TAATTTTACAAACCAG-
66 TAATTTTACAAACCAGA
64389378 GGGTATTTTAGTAATTT
1 GGGTATTTTAGTAATTT
64389395 TGCTAATCGA
Statistics
Matches: 419, Mismatches: 78, Indels: 12
0.82 0.15 0.02
Matches are distributed among these distances:
80 8 0.02
81 401 0.96
82 10 0.02
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.40
Consensus pattern (82 bp):
GGGTATTTTAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
TAATTTTACAAACCAGA
Found at i:64392077 original size:14 final size:14
Alignment explanation
Indices: 64392058--64392091 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
64392048 TCCTTGAGTT
64392058 TCTATAGGCACATC
1 TCTATAGGCACATC
64392072 TCTATAGGCACATC
1 TCTATAGGCACATC
64392086 TCTATA
1 TCTATA
64392092 CAGCTTATCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.32
Consensus pattern (14 bp):
TCTATAGGCACATC
Found at i:64400369 original size:64 final size:64
Alignment explanation
Indices: 64400288--64400471 Score: 176
Period size: 67 Copynumber: 2.8 Consensus size: 64
64400278 AGACATTATG
* * *
64400288 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
** * * * * * *
64400352 ATGTAGCTAGGTCGCATGCATGGTTCCAGGTGAAGGACACCATGTAGACAATAGAGCTATGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
64400417 AA
63 AA
* * *
64400419 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
64400472 CGAACTATAT
Statistics
Matches: 94, Mismatches: 21, Indels: 11
0.75 0.17 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 24 0.26
66 20 0.21
67 31 0.33
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:64403147 original size:41 final size:41
Alignment explanation
Indices: 64403096--64403397 Score: 396
Period size: 41 Copynumber: 7.3 Consensus size: 41
64403086 TATTCGGGCT
*
64403096 TTATTTCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
* *
64403137 TTATTGCCTAGCAGGCTTTGTGCCGGTGCATTATATTAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
* *
64403178 TTATTGCCTAGCAGGCTTTGTGCTGATGTA--ATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
* * *
64403217 TTATTGCCTAGCAGACTTTATATGCCGGTGTATTAAATCAGGC
1 TTATTGCCTAGCAGGC-TT-TGTGCCGGTGTATTATATCAGGC
64403260 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
* * **
64403301 TTATTGCCTAGCAGACTTTATATGCCAATGTATTATATCAGGC
1 TTATTGCCTAGCAGGC-TT-TGTGCCGGTGTATTATATCAGGC
* *
64403344 TTATTGCCTAGTAGGCTTTGTGCTGGTGTATTATA-CTAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATC-AGGC
64403385 TT-TATGCCTAGCA
1 TTAT-TGCCTAGCA
64403398 AATTTTATGT
Statistics
Matches: 227, Mismatches: 26, Indels: 16
0.84 0.10 0.06
Matches are distributed among these distances:
39 23 0.10
40 4 0.02
41 137 0.60
42 6 0.03
43 57 0.25
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.37
Consensus pattern (41 bp):
TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
Found at i:64403326 original size:84 final size:84
Alignment explanation
Indices: 64403096--64403397 Score: 436
Period size: 84 Copynumber: 3.6 Consensus size: 84
64403086 TATTCGGGCT
* * *
64403096 TTATTTCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGGC-TT-TGTG
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGACTTTATATG
* *
64403159 CCGGTGCATTATATTAGGC
66 CCGGTGTATTATATCAGGC
* *
64403178 TTATTGCCTAGCAGGCTTTGTGCTGATGTA--ATATCAGGCTTATTGCCTAGCAGACTTTATATG
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGACTTTATATG
*
64403241 CCGGTGTATTAAATCAGGC
66 CCGGTGTATTATATCAGGC
64403260 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGACTTTATATG
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGACTTTATATG
**
64403325 CCAATGTATTATATCAGGC
66 CCGGTGTATTATATCAGGC
* *
64403344 TTATTGCCTAGTAGGCTTTGTGCTGGTGTATTATA-CTAGGCTT-TATGCCTAGCA
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATC-AGGCTTAT-TGCCTAGCA
64403398 AATTTTATGT
Statistics
Matches: 199, Mismatches: 15, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
80 24 0.12
81 2 0.01
82 74 0.37
83 2 0.01
84 97 0.49
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.37
Consensus pattern (84 bp):
TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGACTTTATATG
CCGGTGTATTATATCAGGC
Found at i:64405922 original size:26 final size:26
Alignment explanation
Indices: 64405861--64405915 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
64405851 TGAAATGGTT
64405861 GGTATTTGGTTATGAGTTTAAGTGCA
1 GGTATTTGGTTATGAGTTTAAGTGCA
64405887 GGTATTTGGTTATGAGTTTAAGTGCA
1 GGTATTTGGTTATGAGTTTAAGTGCA
64405913 GGT
1 GGT
64405916 CATTGGTGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.22, C:0.04, G:0.33, T:0.42
Consensus pattern (26 bp):
GGTATTTGGTTATGAGTTTAAGTGCA
Found at i:64417484 original size:27 final size:27
Alignment explanation
Indices: 64417446--64417588 Score: 164
Period size: 27 Copynumber: 5.3 Consensus size: 27
64417436 CAAAATAGTC
* *
64417446 ATTTTAC-CCTACAGGGGTATTTCGGTA
1 ATTTTACACC-ACAAGGGTATTTCGATA
* *
64417473 ATTTTACACTACAAGGGTATTTCGTTA
1 ATTTTACACCACAAGGGTATTTCGATA
* * *
64417500 ATTTTACACCACAAAGGTATTTTGGTA
1 ATTTTACACCACAAGGGTATTTCGATA
*
64417527 ATTTTACACCATAAGGGTATTTCGATA
1 ATTTTACACCACAAGGGTATTTCGATA
**
64417554 ATTTTA-AAAATCAAGGGTATTTCGATA
1 ATTTTACACCA-CAAGGGTATTTCGATA
64417581 ATTTTACA
1 ATTTTACA
64417589 AATTGGGGGT
Statistics
Matches: 99, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
26 2 0.02
27 95 0.96
28 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.38
Consensus pattern (27 bp):
ATTTTACACCACAAGGGTATTTCGATA
Found at i:64417591 original size:27 final size:27
Alignment explanation
Indices: 64417460--64417623 Score: 138
Period size: 27 Copynumber: 6.1 Consensus size: 27
64417450 TACCCTACAG
* *
64417460 GGGTATTTCGGTAATTTTAC-ACTACAA
1 GGGTATTTCGATAATTTTACAAAT-CAA
* *
64417487 GGGTATTTCGTTAATTTTACACCA-CAA
1 GGGTATTTCGATAATTTTACA-AATCAA
* * * *
64417514 AGGTATTTTGGTAATTTTACACCAT-AA
1 GGGTATTTCGATAATTTTACA-AATCAA
*
64417541 GGGTATTTCGATAATTTTAAAAATCAA
1 GGGTATTTCGATAATTTTACAAATCAA
***
64417568 GGGTATTTCGATAATTTTACAAATTGG
1 GGGTATTTCGATAATTTTACAAATCAA
* *
64417595 GGGTATTT-TAGTAATTTTACAAATTAA
1 GGGTATTTCGA-TAATTTTACAAATCAA
64417622 GG
1 GG
64417624 TCTTAACATC
Statistics
Matches: 114, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
26 3 0.03
27 111 0.97
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACAAATCAA
Found at i:64421888 original size:19 final size:19
Alignment explanation
Indices: 64421838--64421896 Score: 75
Period size: 19 Copynumber: 3.2 Consensus size: 19
64421828 AGTACAGTAA
*
64421838 CAGTAACCAGTGCAGTATG
1 CAGTAATCAGTGCAGTATG
*
64421857 CA-TAATCAGTGCAGTACG
1 CAGTAATCAGTGCAGTATG
* *
64421875 CAGTACTTAGTGCAGTATG
1 CAGTAATCAGTGCAGTATG
64421894 CAG
1 CAG
64421897 GTCCTACCCA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
18 16 0.47
19 18 0.53
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (19 bp):
CAGTAATCAGTGCAGTATG
Found at i:64422262 original size:27 final size:27
Alignment explanation
Indices: 64422231--64422430 Score: 258
Period size: 27 Copynumber: 7.4 Consensus size: 27
64422221 GGGCATATCG
*
64422231 GTCATCTTACCAT-ATAAGGGCAAAACA
1 GTCATTTTACC-TCATAAGGGCAAAACA
* *
64422258 ATCATTTTACCTTATAAGGGCAAAACA
1 GTCATTTTACCTCATAAGGGCAAAACA
* * *
64422285 GTCATTTTACCTCATCAGGGAAAAATA
1 GTCATTTTACCTCATAAGGGCAAAACA
64422312 GTCATTTTACCTCATAAGGGCAAAACA
1 GTCATTTTACCTCATAAGGGCAAAACA
* *
64422339 GTCATTTTACCTCAGAAGGGCAAAATA
1 GTCATTTTACCTCATAAGGGCAAAACA
* * *
64422366 GTCATTTTACCTCAAAAGCGCAAAATA
1 GTCATTTTACCTCATAAGGGCAAAACA
* * *
64422393 GTCATTTTACCTCATAAGCGAAAAATA
1 GTCATTTTACCTCATAAGGGCAAAACA
64422420 GTCATTTTACC
1 GTCATTTTACC
64422431 GATTAGGGTT
Statistics
Matches: 156, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
26 1 0.01
27 155 0.99
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.28
Consensus pattern (27 bp):
GTCATTTTACCTCATAAGGGCAAAACA
Found at i:64422571 original size:18 final size:17
Alignment explanation
Indices: 64422545--64422578 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
64422535 CATAATGCGG
64422545 GCCCATGTGGGCCCACAC
1 GCCCATGT-GGCCCACAC
*
64422563 GCCCGTGTGGCCCACA
1 GCCCATGTGGCCCACA
64422579 AAGCCCAGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.15, C:0.44, G:0.29, T:0.12
Consensus pattern (17 bp):
GCCCATGTGGCCCACAC
Found at i:64426738 original size:26 final size:26
Alignment explanation
Indices: 64426709--64426790 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
64426699 TGATAAAAAT
*
64426709 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
64426735 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
64426761 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
64426787 TGAT
1 TGAT
64426791 GGGCATTTCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.32, C:0.07, G:0.26, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:64427978 original size:8 final size:8
Alignment explanation
Indices: 64427965--64427994 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
64427955 AGATCGGCAC
64427965 AAGCCGAA
1 AAGCCGAA
64427973 AAGCCGAA
1 AAGCCGAA
*
64427981 ATGCCGAA
1 AAGCCGAA
64427989 AAGCCG
1 AAGCCG
64427995 GTATTTTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.27, G:0.27, T:0.03
Consensus pattern (8 bp):
AAGCCGAA
Found at i:64428423 original size:27 final size:28
Alignment explanation
Indices: 64428383--64428511 Score: 160
Period size: 27 Copynumber: 4.8 Consensus size: 28
64428373 AGGAAGCGTC
* *
64428383 CTGGTGGCTATGCCACAAT-TATCTAAT
1 CTGGTGGCTCTGCCACAATATATCTGAT
64428410 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAATATATCTGAT
* *
64428436 CCTGGTGGCTATGCCAAAAT-TATCTGAT
1 -CTGGTGGCTCTGCCACAATATATCTGAT
* *
64428464 CTGGTGGCTCTGCCAC-ATATATTTGTT
1 CTGGTGGCTCTGCCACAATATATCTGAT
64428491 CTGGTGGCTCTGCCACAATAT
1 CTGGTGGCTCTGCCACAATAT
64428512 TTGTATCTGA
Statistics
Matches: 88, Mismatches: 8, Indels: 11
0.82 0.07 0.10
Matches are distributed among these distances:
26 5 0.06
27 76 0.86
28 7 0.08
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAATATATCTGAT
Found at i:64428520 original size:54 final size:54
Alignment explanation
Indices: 64428380--64428509 Score: 215
Period size: 54 Copynumber: 2.4 Consensus size: 54
64428370 TGGAGGAAGC
*
64428380 GTCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
64428434 GTCCTGGTGGCTATGCCAAAATTATCTGATCTGGTGGCTCTGCCACATATATTT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
64428488 GTTCTGGTGGCTCTGCCACAAT
1 GTCCTGGTGGCTATGCCACAAT
64428510 ATTTGTATCT
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 70 1.00
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:64430055 original size:24 final size:24
Alignment explanation
Indices: 64430023--64430098 Score: 116
Period size: 24 Copynumber: 3.2 Consensus size: 24
64430013 AAGTCTATCA
*
64430023 GGAGAGGATTTAGGAGTTGGTAAG
1 GGAGAGGATTTAGGAGTTGATAAG
64430047 GGAGAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGTTGATAAG
* **
64430071 GGATAGGATTTAGGAGCAGATAAG
1 GGAGAGGATTTAGGAGTTGATAAG
64430095 GGAG
1 GGAG
64430099 GAAATCTAGG
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.33, C:0.01, G:0.43, T:0.22
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGTTGATAAG
Found at i:64431618 original size:28 final size:27
Alignment explanation
Indices: 64431525--64431629 Score: 115
Period size: 27 Copynumber: 3.9 Consensus size: 27
64431515 AGGAAGCGTC
* *
64431525 CTGGTGGCTATGACACAATTATCTG-AT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
* *
64431552 CTAGTGGCTCTGCCACATATTTCTGT-T
1 CTGGTGGCTCTGCCACAT-TATCTGTAT
64431579 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
* *
64431607 CTGGTGACTCTGTCACATTATCT
1 CTGGTGGCTCTGCCACATTATCT
64431630 ATTCTGGCAG
Statistics
Matches: 66, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
26 2 0.03
27 47 0.71
28 17 0.26
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTATCTGTAT
Found at i:64431635 original size:54 final size:54
Alignment explanation
Indices: 64431525--64431636 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 54
64431515 AGGAAGCGTC
* * *
64431525 CTGGTGGCTATGACACAATTATCTGATCTAGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGACACAATTATCTGATCTAGTGACTCTGCCACATATATCTATT
* * * * *
64431579 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTATT
1 CTGGTGGCTATGACACAATTATCTG-ATCTAGTGACTCTGCCACATATATCTATT
64431633 CTGG
1 CTGG
64431637 CAGCCATGCT
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
54 32 0.65
55 17 0.35
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGACACAATTATCTGATCTAGTGACTCTGCCACATATATCTATT
Found at i:64432719 original size:11 final size:10
Alignment explanation
Indices: 64432691--64432725 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
64432681 AGCCTGTAAG
64432691 TATTCTGAAT
1 TATTCTGAAT
*
64432701 TTTTCTGAAT
1 TATTCTGAAT
64432711 ATATTCTGAAT
1 -TATTCTGAAT
64432722 TATT
1 TATT
64432726 TGTCTGTACT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.54
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:64433677 original size:17 final size:19
Alignment explanation
Indices: 64433650--64433684 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
64433640 GTTAAGATAG
64433650 CTGAGGAGGTA-AAGCGTA
1 CTGAGGAGGTAGAAGCGTA
64433668 CTGA-GAGGTAGAAGCGT
1 CTGAGGAGGTAGAAGCGT
64433685 GAGAAAGATC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.11, G:0.40, T:0.17
Consensus pattern (19 bp):
CTGAGGAGGTAGAAGCGTA
Found at i:64437938 original size:24 final size:24
Alignment explanation
Indices: 64437906--64437976 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
64437896 CTGTCAGGAG
*
64437906 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAA
64437930 AGGATTTAGGAGTTGATAAGGGAA
1 AGGATTTAGGAGTTGATAAGGGAA
**
64437954 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
64437977 GGAAATCTAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.37, C:0.01, G:0.38, T:0.24
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAA
Found at i:64437988 original size:48 final size:48
Alignment explanation
Indices: 64437906--64437999 Score: 111
Period size: 48 Copynumber: 1.9 Consensus size: 48
64437896 CTGTCAGGAG
** * *
64437906 AGGATTTAGGAGTTGATAAGGGATAGGATTTAGGAGTTGAT-AAGGGAA
1 AGGATTTAGGAGCAGATAAGGGA-AGGATCTAGGAGCTGATCAAGGGAA
64437954 AGGATTTAGGAGCAGATAAGGG-AGGAAATCTAGGAGCTGATCAAGG
1 AGGATTTAGGAGCAGATAAGGGAAGG--ATCTAGGAGCTGATCAAGG
64438000 AACAGGAGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
46 3 0.08
48 32 0.82
49 4 0.10
ACGTcount: A:0.36, C:0.04, G:0.37, T:0.22
Consensus pattern (48 bp):
AGGATTTAGGAGCAGATAAGGGAAGGATCTAGGAGCTGATCAAGGGAA
Found at i:64439456 original size:27 final size:27
Alignment explanation
Indices: 64439418--64439526 Score: 114
Period size: 27 Copynumber: 4.0 Consensus size: 27
64439408 AAGCGTCCTA
*
64439418 GTGGCTATGCCACAATTATCTGATCTG
1 GTGGCTCTGCCACAATTATCTGATCTG
*
64439445 GTGGCTCTGCCACATATT-TCTGTTCTG
1 GTGGCTCTGCCACA-ATTATCTGATCTG
* *
64439472 GTGGCTTTGCCACGATTATCTGTATCTG
1 GTGGCTCTGCCACAATTATCTG-ATCTG
* * * *
64439500 GTGACTCTGTCAC-ATTTTCTGTTCTG
1 GTGGCTCTGCCACAATTATCTGATCTG
64439526 G
1 G
64439527 CAGCCATGCT
Statistics
Matches: 69, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 8 0.12
27 44 0.64
28 17 0.25
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.39
Consensus pattern (27 bp):
GTGGCTCTGCCACAATTATCTGATCTG
Done.